Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 145 of 290
Found at i:46222424 original size:16 final size:15
Alignment explanation
Indices: 46222385--46222429 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
46222375 ACTAGTTGAA
46222385 TTGATTTTCTCTATTTT
1 TTGATTTT-T-TATTTT
*
46222402 TTTATTTTTTATTTT
1 TTGATTTTTTATTTT
46222417 TATGATTTTTTAT
1 T-TGATTTTTTAT
46222430 AATTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.28
16 11 0.44
17 7 0.28
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (15 bp):
TTGATTTTTTATTTT
Found at i:46227953 original size:26 final size:26
Alignment explanation
Indices: 46227921--46228002 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
46227911 AATTATCTGG
46227921 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
*
46227947 TACACAT-GT-GACCT-AACCATCT-G-A-
1 TACACATAGTAG-CCTGCA-C-T-TAGTAC
*
46227971 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
46227997 TACACA
1 TACACA
46228003 CGTGATCGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
23 1 0.02
24 10 0.24
25 14 0.33
26 16 0.38
27 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:46227986 original size:50 final size:50
Alignment explanation
Indices: 46227865--46228061 Score: 261
Period size: 50 Copynumber: 3.9 Consensus size: 50
46227855 TAGCCGAAGC
* * * *
46227865 TATCTGGTACGCATCGTAGCTTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAT
*
46227914 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAT
* * * * * *
46227964 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-T
* *
46228015 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT
46228062 CACAATAGAT
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
49 42 0.33
50 45 0.36
51 39 0.31
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAT
Found at i:46228043 original size:101 final size:99
Alignment explanation
Indices: 46227880--46228061 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 99
46227870 GGTACGCATC
* * *
46227880 GTAGCTTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACATAGTAGCCTGCACTTAGT
1 GTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTAGT
46227945 ACTACACATGTGACCTAACCATCTGATACACGTA
66 ACTACACATGTGACCTAACCATCTGATACACGTA
* * *
46227979 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACTTA
1 GTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACTTA
46228044 GTACTACACATGTGACCT
64 GTACTACACATGTGACCT
46228062 CACAATAGAT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
99 26 0.35
100 3 0.04
101 46 0.61
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (99 bp):
GTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTAGT
ACTACACATGTGACCTAACCATCTGATACACGTA
Found at i:46250289 original size:13 final size:15
Alignment explanation
Indices: 46250271--46250303 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
46250261 TTTTTAAATT
46250271 AAATAACAT-ATA-A
1 AAATAACATAATATA
46250284 AAATAACATAATATA
1 AAATAACATAATATA
46250299 AAATA
1 AAATA
46250304 TTACAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAACATAATATA
Found at i:46252192 original size:13 final size:13
Alignment explanation
Indices: 46252176--46252208 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
46252166 TTTGATTAAA
*
46252176 TTAGTTAATTAGT
1 TTAGATAATTAGT
46252189 TTAGATAATTAGT
1 TTAGATAATTAGT
46252202 TTA-ATAA
1 TTAGATAA
46252209 ACAAAGCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:46257517 original size:14 final size:15
Alignment explanation
Indices: 46257498--46257527 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
46257488 TGAATCCTCC
46257498 TATTTTATT-TTATT
1 TATTTTATTCTTATT
46257512 TATTTTATTCTTATT
1 TATTTTATTCTTATT
46257527 T
1 T
46257528 TTCTTTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TATTTTATTCTTATT
Found at i:46260752 original size:17 final size:17
Alignment explanation
Indices: 46260732--46260780 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
46260722 TTAAGATAAT
46260732 AAAATAAGAATATACT-A
1 AAAATAA-AATATACTCA
*
46260749 AAAATAAAATATATTCA
1 AAAATAAAATATACTCA
46260766 AAAATGAAAAATATA
1 AAAAT--AAAATATA
46260781 AATTTAAGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 7 0.25
17 13 0.46
19 8 0.29
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (17 bp):
AAAATAAAATATACTCA
Found at i:46269519 original size:48 final size:47
Alignment explanation
Indices: 46269464--46269795 Score: 270
Period size: 48 Copynumber: 6.9 Consensus size: 47
46269454 GGATGAATTA
* * * * *
46269464 CCGATGCCATGTTCAAAACATGGTCTTACACTTGCTCACATGTCGAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
46269511 CCCGATGCCATATCCCAAACATGGTCTTACACTAGCTCTTATCTCAATG
1 -CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGA-G
* * * * * *
46269560 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATGTTGTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCG-AG
* * * * * * * *
46269608 CTGATGCTATGTCTCAGACATGGTCTTACACTAGCACACATTTCAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGA-G
* * * *
46269656 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCTCTCACAAC-ATCG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGA--G
* * * *
46269704 CCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCG-AG
* * * * *
46269752 CTGACGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC
46269796 ACCCAAATTT
Statistics
Matches: 224, Mismatches: 54, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
47 1 0.00
48 222 0.99
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:46269602 original size:96 final size:96
Alignment explanation
Indices: 46269464--46269779 Score: 330
Period size: 96 Copynumber: 3.3 Consensus size: 96
46269454 GGATGAATTA
* * * * * *
46269464 CCGATGCCATGTTCAAAACATGGTCTTACACTTGCTCACATGTCGAGCCCGATGCCATATCCCAA
1 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCTCTCATGTCGAGCCCGATGCCATGTCCCAA
* *
46269529 ACATGGTCTTACACTAGCTCTTATCTCAATG
66 ACATGGTCTTACACTAGCTCTCATATCAATG
* * * * * * * *
46269560 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATGTTGTGGCTGATGCTATGTCTCAG
1 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCTCTCATGTCGAGCCCGATGCCATGTCCCAA
* * *
46269625 ACATGGTCTTACACTAGCACACATTTCAATG
66 ACATGGTCTTACACTAGCTCTCATATCAATG
*** * *
46269656 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCTCTCACAAC-ATCGCCGATGCCATGTTCCA
1 CCGATGCCATGTCCCAAACATGGTCTTATACTGGCTCTCATGTCGAGC-CCGATGCCATGTCCCA
* * *
46269720 AACATGGTCTTACATTGGCTCTCATATC-GTGG
65 AACATGGTCTTACACTAGCTCTCATATCAAT-G
* * *
46269752 CTGACGCCATGTCCCAGACATGGTCTTA
1 CCGATGCCATGTCCCAAACATGGTCTTA
46269780 CACTAGCACA
Statistics
Matches: 178, Mismatches: 40, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
95 1 0.01
96 177 0.99
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (96 bp):
CCGATGCCATGTCCCAAACATGGTCTTATACTGGCTCTCATGTCGAGCCCGATGCCATGTCCCAA
ACATGGTCTTACACTAGCTCTCATATCAATG
Found at i:46269726 original size:144 final size:144
Alignment explanation
Indices: 46269481--46269792 Score: 414
Period size: 144 Copynumber: 2.2 Consensus size: 144
46269471 CATGTTCAAA
* * *
46269481 ACATGGTCTTACACTTGCTCACATGTCGAGCCCGATGCCATATCCCAAACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGCACACATGTCAAGCCCGATGCCATATCCCAAACATGGTCTTACACTAG
* * * * * *
46269546 CTCTTATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATGTTGTGGCTG
66 CTCTCATCACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTG
* * *
46269611 ATGCTATGTCTCAG
131 ACGCCATGTCCCAG
* * * *
46269625 ACATGGTCTTACACTAGCACACATTTCAATG-CCGATGCCATGTCCCAAACATGGTCTTATACTG
1 ACATGGTCTTACACTAGCACACATGTCAA-GCCCGATGCCATATCCCAAACATGGTCTTACACTA
* *
46269689 GCTCTCA-CA-ACATCGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTGG
65 GCTCTCATCACA-AT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGG
46269752 CTGACGCCATGTCCCAG
128 CTGACGCCATGTCCCAG
46269769 ACATGGTCTTACACTAGCACACAT
1 ACATGGTCTTACACTAGCACACAT
46269793 ATCACCCAAA
Statistics
Matches: 147, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
142 1 0.01
143 3 0.02
144 142 0.97
145 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (144 bp):
ACATGGTCTTACACTAGCACACATGTCAAGCCCGATGCCATATCCCAAACATGGTCTTACACTAG
CTCTCATCACAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTG
ACGCCATGTCCCAG
Found at i:46274024 original size:28 final size:29
Alignment explanation
Indices: 46273957--46274028 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
46273947 CATATAATCA
46273957 TGGCAGAGCCACCAACACAGATATATATG
1 TGGCAGAGCCACCAACACAGATATATATG
* *
46273986 TGGCAGAGCCACCAGA-TCAGATA-ATTTG
1 TGGCAGAGCCACCA-ACACAGATATATATG
*
46274014 TGGCATAGCCACCAA
1 TGGCAGAGCCACCAA
46274029 GACGCTTCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
27 1 0.03
28 17 0.44
29 20 0.51
30 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (29 bp):
TGGCAGAGCCACCAACACAGATATATATG
Found at i:46275479 original size:24 final size:24
Alignment explanation
Indices: 46275452--46275498 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
46275442 CTAGATTTCC
**
46275452 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
46275476 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
46275499 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:46276866 original size:47 final size:47
Alignment explanation
Indices: 46276810--46276907 Score: 187
Period size: 47 Copynumber: 2.1 Consensus size: 47
46276800 TAAGTTGGAT
*
46276810 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
46276857 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
46276904 TTAA
1 TTAA
46276908 AGAAAATTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.45
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
Found at i:46277750 original size:45 final size:45
Alignment explanation
Indices: 46277686--46277903 Score: 302
Period size: 45 Copynumber: 4.9 Consensus size: 45
46277676 ATCATACAAT
46277686 ACTATTCGGGCCTTTGAGCCTAGC-GTGCTATAATGCCGGTGAGAC
1 ACTATTCGGGCCTTTGAGCCTAGCAG-GCTATAATGCCGGTGAGAC
*** * * *
46277731 ACTATTCAAACCTTTGAGCCTAGCAGGCTATAATGCTGGTCAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
46277776 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
*
46277821 ACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAG--
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
*
46277864 ACTATTCGGG-CTTTGAGCCTAGCAGGCGA-AATGCCGGTGA
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
46277904 ATGAATTCGG
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 11 0.07
42 17 0.11
43 10 0.06
45 117 0.75
46 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (45 bp):
ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:46284395 original size:47 final size:47
Alignment explanation
Indices: 46284339--46284436 Score: 196
Period size: 47 Copynumber: 2.1 Consensus size: 47
46284329 TAAGTTGGAT
46284339 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
46284386 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
46284433 TTAA
1 TTAA
46284437 AGAAAATTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
Found at i:46285280 original size:45 final size:45
Alignment explanation
Indices: 46285215--46285422 Score: 319
Period size: 45 Copynumber: 4.6 Consensus size: 45
46285205 TATCGTACAG
46285215 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* *
46285260 CACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTCAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
*
46285305 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTTGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* * ***
46285350 TACTATTCGGGCCTTTGAGTCTAGTAGGCTATAATGCCAATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
* *
46285395 TACTATTCGGG-CTTCGAGCCTAGTAGGC
1 TACTATTCGGGCCTTTGAGCCTAGCAGGC
46285423 GAAATGCCAG
Statistics
Matches: 151, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
44 15 0.10
45 136 0.90
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
Found at i:46288889 original size:12 final size:13
Alignment explanation
Indices: 46288865--46288893 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
46288855 GGGCTATAAC
46288865 TATTGCATTTATT
1 TATTGCATTTATT
46288878 TATTGC-TTTATT
1 TATTGCATTTATT
46288890 TATT
1 TATT
46288894 CATGATGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:46296025 original size:22 final size:22
Alignment explanation
Indices: 46295999--46296043 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
46295989 ATTATGTGTA
46295999 TTAATTCATAGTATAA-TTAATT
1 TTAATTCATA-TATAATTTAATT
* *
46296021 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
46296043 T
1 T
46296044 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:46301982 original size:28 final size:28
Alignment explanation
Indices: 46301946--46302038 Score: 107
Period size: 28 Copynumber: 3.4 Consensus size: 28
46301936 ATATTGTGAT
* *
46301946 AGAGTCACCAGATACAGATAATTGTGGT
1 AGAGCCACCAGATACAGATAATTGTGGC
* * * *
46301974 AGGGCCACCAGAAATAGATATTTGTGGC
1 AGAGCCACCAGATACAGATAATTGTGGC
* *
46302002 AGAGCCACTAGAT-CAGATATTTGTGGC
1 AGAGCCACCAGATACAGATAATTGTGGC
46302029 AGAGCCACCA
1 AGAGCCACCA
46302039 AAACGCTTCA
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
27 22 0.41
28 32 0.59
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (28 bp):
AGAGCCACCAGATACAGATAATTGTGGC
Found at i:46302019 original size:55 final size:55
Alignment explanation
Indices: 46301931--46302038 Score: 137
Period size: 55 Copynumber: 2.0 Consensus size: 55
46301921 TGGCTGCAAT
* * * *
46301931 AATAGATATTGTGATAGAGTCACCAGATACAGATAATTGTGGTAGGGCCACCAGA
1 AATAGATATTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
* * *
46301986 AATAGATATTTGTGGCAGAGCCACTAGAT-CAGATATTTGTGGCAGAGCCACCA
1 AATAGATA-TTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCACCA
46302039 AAACGCTTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
55 29 0.64
56 16 0.36
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (55 bp):
AATAGATATTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
Found at i:46303144 original size:17 final size:17
Alignment explanation
Indices: 46303122--46303154 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46303112 TCGGCTATGG
46303122 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
46303139 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
46303155 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:46309653 original size:490 final size:489
Alignment explanation
Indices: 46308733--46309716 Score: 1774
Period size: 490 Copynumber: 2.0 Consensus size: 489
46308723 CTAGGCGCAA
*
46308733 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTATTTTTTCCAAAGTGTGAGTTAAGGACTG
1 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTGTGAGTTAAGGACTG
*
46308798 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAATGAGATTTG
66 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAATGAGATCTG
* * *
46308863 AACCTAGAATAAGAGAAAAATCGAAAATTAGGAAAGTTGGTAAAATGATCGTTTTAGTATCGAGG
131 AACCTAGAATAAGAGAAAAACCAAAAATTAGGAAAGTTGGTAAAATGACCGTTTTAGTATCGAGG
46308928 TAAGTTCATATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
196 TAAGTTCATATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
* *
46308993 TGATTTCTAAGTTGTTGAAAGTATGTAAGTTGGTATGCTAATAATACAGCAATAATGTTGTAATT
261 TGATTTCGAAG-TGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAATT
46309058 TATATTTGAAAGTTAAATTTAGTGATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCAAG
325 TATATTTGAAAGTTAAATTTAGTGATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCAAG
*
46309123 TTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGCATTTAATTATCTTACATAAATG
390 TTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGCATTTAATTATCATACATAAATG
46309188 TGATTTCTATGATTATGGATATTATGGGAAATTAT
455 TGATTTCTATGATTATGGATATTATGGGAAATTAT
*
46309223 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTTTGAGTTAAGGACTG
1 AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTGTGAGTTAAGGACTG
46309288 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAATGAGATCTG
66 TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAATGAGATCTG
* * * *
46309353 AACCTAGAATGAGAGAAAAACCAAAAATTGGGAAAGTTGGTAAAATGGCCGTTTTAGTATTGAGG
131 AACCTAGAATAAGAGAAAAACCAAAAATTAGGAAAGTTGGTAAAATGACCGTTTTAGTATCGAGG
* *
46309418 TAAGTTCATATGTATAATAAGCATTAATTTATGCATGTTTCAATGTGAAATTGATATATTTATTA
196 TAAGTTCATATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
46309483 TGATTTTCGATA-TGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAAT
261 TGA-TTTCGA-AGTGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAAT
46309547 TTATATTTGAAAGTTAAATTTAGTGAATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCA
324 TTATATTTGAAAGTTAAATTTAGTG-ATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCA
46309612 AGTTTATGAATTGATTTAAAAATATGTCTA-GGTACATGAAGTGCATTTAATTATCATACATAAA
388 AGTTTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGCATTTAATTATCATACATAAA
*
46309676 TGTGATTTCTATGATTATGGATATTATGGGAAATTGT
453 TGTGATTTCTATGATTATGGATATTATGGGAAATTAT
46309713 AAGT
1 AAGT
46309717 TCATATGATT
Statistics
Matches: 475, Mismatches: 16, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
490 400 0.84
491 74 0.16
492 1 0.00
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (489 bp):
AAGTGTAAATATGCAAAAGTTTAGGGGCAAAATTGTAATTTTTCCAAAGTGTGAGTTAAGGACTG
TTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGTTTTAGATCCCGAAAAATGAGATCTG
AACCTAGAATAAGAGAAAAACCAAAAATTAGGAAAGTTGGTAAAATGACCGTTTTAGTATCGAGG
TAAGTTCATATGTATAATAAGAATTAATTTATGCATGTTTCAATGTAAAATTGATATATTTATTA
TGATTTCGAAGTGTTGAAAGTATGTAAGTTGGTATGATAATAATACAGCAATAATGTTGTAATTT
ATATTTGAAAGTTAAATTTAGTGATTAATTGAATTATGTTAAATTAAATGATTATGGTGCCAAGT
TTATGAATTGATTTAAAAATATGTCTATGGTACATGAAGTGCATTTAATTATCATACATAAATGT
GATTTCTATGATTATGGATATTATGGGAAATTAT
Found at i:46313550 original size:28 final size:28
Alignment explanation
Indices: 46313519--46313608 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
46313509 GTGATAAAGT
*
46313519 CACCAGATACAGATAATTGTGGCAGGGC
1 CACCAGATACAGATATTTGTGGCAGGGC
*
46313547 CACCAGAAACAGATATTTGTGGC-GGAGC
1 CACCAGATACAGATATTTGTGGCAGG-GC
*
46313575 CACCAGAT-CAGATATTTGTGGCAGAGC
1 CACCAGATACAGATATTTGTGGCAGGGC
46313602 CACCAGA
1 CACCAGA
46313609 ACGCTTCCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 25 0.45
28 31 0.55
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (28 bp):
CACCAGATACAGATATTTGTGGCAGGGC
Found at i:46313594 original size:27 final size:27
Alignment explanation
Indices: 46313519--46313608 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
46313509 GTGATAAAGT
*
46313519 CACCAGATACAGATAATTGTGGCAGG-GC
1 CACCAGAT-CAGATATTTGTGGC-GGAGC
*
46313547 CACCAGAAACAGATATTTGTGGCGGAGC
1 CACCAG-ATCAGATATTTGTGGCGGAGC
*
46313575 CACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATATTTGTGGCGGAGC
46313602 CACCAGA
1 CACCAGA
46313609 ACGCTTCCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 28 0.50
28 27 0.48
29 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (27 bp):
CACCAGATCAGATATTTGTGGCGGAGC
Found at i:46314721 original size:17 final size:17
Alignment explanation
Indices: 46314699--46314731 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46314689 TCAGCTATGG
46314699 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
46314716 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
46314732 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:46324931 original size:27 final size:27
Alignment explanation
Indices: 46324887--46324997 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
46324877 TGGCTGCCAA
* *
46324887 AACAGATA-TTGTGACAGAGTCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
*
46324913 ATACAAATA-TTGTGGCAGAGCCACCAG
1 A-ACAGATATTTGTGGCAGAGCCACCAG
* *
46324940 AATAGATATTTGTGGCATAGCCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
46324967 AAACAGATATTTGTGGCATG-GCCACCAG
1 -AACAGATATTTGTGGCA-GAGCCACCAG
46324995 AAC
1 AAC
46324998 GCTTCCACCA
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 43 0.59
28 24 0.33
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
AACAGATATTTGTGGCAGAGCCACCAG
Found at i:46331582 original size:68 final size:64
Alignment explanation
Indices: 46331441--46331588 Score: 163
Period size: 68 Copynumber: 2.2 Consensus size: 64
46331431 TGGAACAACG
* * * * *
46331441 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTATACATGGTGTACACATAGTATCACC
1 CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGCACCACA
* *
46331505 CATGCGACCTAGCTACATCATAATGCCTTGTAGCTCTCTTGTACACATGATGTGCAC-TCAGCAC
1 CATGCGACCTAGCTACAT-AT-AT-CC-CGTAGCTCTCTTGTACACATGATGTACACAT-AGCAC
*
46331569 CATA
61 CACA
*
46331573 CATGTGACCTAGCTAC
1 CATGCGACCTAGCTAC
46331589 GTTCCATCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 18 0.26
65 2 0.03
66 2 0.03
67 3 0.04
68 45 0.64
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (64 bp):
CATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGCACCACA
Found at i:46332288 original size:30 final size:30
Alignment explanation
Indices: 46332254--46332314 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46332244 TCATTAACGC
*
46332254 AAACTTTGGAAAAATTACAGTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
46332284 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
46332314 A
1 A
46332315 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:46338208 original size:42 final size:43
Alignment explanation
Indices: 46338157--46338262 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 43
46338147 TGAGATTTAC
*
46338157 GTGTAAGACCATGTCTGGGACA-TCAGCATCG-TATATGATTTT
1 GTGTAAGACCATGTCTGGGACAGT-AGCATCGATATATGATTAT
* * * *
46338199 GTGTAAGACCTTGTCTGAGACAGTGGCATCGATATTTGATTAT
1 GTGTAAGACCATGTCTGGGACAGTAGCATCGATATATGATTAT
* * *
46338242 ATGAAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
46338263 GTTGGCATTG
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTAGCATCGATATATGATTAT
Found at i:46338269 original size:43 final size:42
Alignment explanation
Indices: 46338161--46338270 Score: 105
Period size: 43 Copynumber: 2.6 Consensus size: 42
46338151 ATTTACGTGT
* ** * * *
46338161 AAGACCATGTCTGGGACATCAGCATCGTATATGATTTTGTGT
1 AAGACCATGTCTGGGACGTTGGCATCGTATATGATTATATGA
* * *
46338203 AAGACCTTGTCTGAGACAG-TGGCATCGATATTTGATTATATGA
1 AAGACCATGTCTGGGAC-GTTGGCATCG-TATATGATTATATGA
*
46338246 AAGACCACGTCTGGGACGTTGGCAT
1 AAGACCATGTCTGGGACGTTGGCAT
46338271 TGTACAAGCT
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 22 0.42
43 31 0.58
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
AAGACCATGTCTGGGACGTTGGCATCGTATATGATTATATGA
Found at i:46340516 original size:20 final size:20
Alignment explanation
Indices: 46340491--46340535 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
46340481 AGGGACTAAA
* *
46340491 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
46340511 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
46340531 ATGAA
1 ATGAA
46340536 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:46342906 original size:47 final size:47
Alignment explanation
Indices: 46342828--46343139 Score: 464
Period size: 47 Copynumber: 6.6 Consensus size: 47
46342818 CCCTTCGGGA
* * * * * *
46342828 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46342874 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46342922 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46342969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46343016 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46343065 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46343114 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
46343140 CACAATTATC
Statistics
Matches: 247, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
46 2 0.01
47 148 0.60
48 2 0.01
49 95 0.38
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46368135 original size:51 final size:51
Alignment explanation
Indices: 46368057--46368158 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
46368047 AACCTACTGT
* *
46368057 CTGTTAAAAATTTACCTATTGACTTCACTGAATTTATGGCAGAAGTTTCAA
1 CTGTTAAAAATTTACCTATTGAATTCACTAAATTTATGGCAGAAGTTTCAA
*
46368108 CTGTTAAAAATTTACCTATTGAATTCACTAAATTTGTGGCAGAAGTTTCAA
1 CTGTTAAAAATTTACCTATTGAATTCACTAAATTTATGGCAGAAGTTTCAA
46368159 ACCTCCTAGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (51 bp):
CTGTTAAAAATTTACCTATTGAATTCACTAAATTTATGGCAGAAGTTTCAA
Found at i:46368420 original size:72 final size:72
Alignment explanation
Indices: 46368303--46368447 Score: 263
Period size: 72 Copynumber: 2.0 Consensus size: 72
46368293 TTAACCCAAT
* *
46368303 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACGGTGAATTGCTT
1 ATGATGCAGTGGTAAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
46368368 CGTGTTG
66 CGTGTTG
*
46368375 ATGATGCAGTGGTAAACTGTAAACAGAAATATATTGTATTGAAATGTGAGAACAGTGAATTGCTT
1 ATGATGCAGTGGTAAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
46368440 CGTGTTG
66 CGTGTTG
46368447 A
1 A
46368448 ATCTGATAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (72 bp):
ATGATGCAGTGGTAAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
CGTGTTG
Found at i:46380244 original size:53 final size:53
Alignment explanation
Indices: 46380171--46380278 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
46380161 CTTGTTAAAT
*
46380171 TTGCTCTTAATATTTTTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
1 TTGCTCTTAATATTTCTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
*
46380224 TTGCTCTTAATATTTCTGGACAAGTTACTTAGTTAAGCTTGTTAAATTTGCTC
1 TTGCTCTTAATATTTCTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
46380277 TT
1 TT
46380279 AATATTTCCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (53 bp):
TTGCTCTTAATATTTCTGGACAAGGTACTTAGTTAAGCTTGTTAAATTTGCTC
Found at i:46380275 original size:47 final size:47
Alignment explanation
Indices: 46380158--46380306 Score: 208
Period size: 47 Copynumber: 3.0 Consensus size: 47
46380148 GTTGAATTTA
* *
46380158 AAGCTTGTTAAATTTGCTCTTAATATTTTTGGACAAGGTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
46380205 AAGCTTGTTAAATTTGCTCTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
1 AAGCTTGTTAAA-----T-TTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
* *
46380258 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
46380305 AA
1 AA
46380307 AGACAATTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
47 46 0.50
48 1 0.01
52 1 0.01
53 44 0.48
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCTGGACAAGTTACTTAGTT
Found at i:46381176 original size:45 final size:45
Alignment explanation
Indices: 46381110--46381284 Score: 207
Period size: 45 Copynumber: 4.0 Consensus size: 45
46381100 TATCGTACAG
* * * * *
46381110 TACTATTCAGGCTTTTAAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
46381155 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* * *
46381200 TACTGTTTGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* *
46381244 -A-TGATGTCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 TACT-AT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
46381285 ATGAATTCGG
Statistics
Matches: 117, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
42 12 0.10
43 20 0.17
44 5 0.04
45 80 0.68
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
Found at i:46381308 original size:42 final size:43
Alignment explanation
Indices: 46381174--46381312 Score: 115
Period size: 45 Copynumber: 3.2 Consensus size: 43
46381164 GGCCTTTGAG
* * * * *
46381174 CCTAGCAGGCTATAATGCCAGTGAGAT-ACTGTTTGGGCCTTCGAG
1 CCTAGCAGGCGATAATGCCAGTGAAATGA-TG-TCGGG-CTTCAAA
* * *
46381219 CCTAGCAGGCTATAATGCCAGTGAAATGATGTCGGGCTTCGAG
1 CCTAGCAGGCGATAATGCCAGTGAAATGATGTCGGGCTTCAAA
* *
46381262 CCTAGCAGGCGA-AATGCCAGTG-AATGAAT-TCGGGTTTTTAAA
1 CCTAGCAGGCGATAATGCCAGTGAAATG-ATGTCGGG-CTTCAAA
46381304 CCTAGCAGG
1 CCTAGCAGG
46381313 TTGAATGCCG
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
41 9 0.11
42 24 0.29
43 18 0.21
44 4 0.05
45 28 0.33
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (43 bp):
CCTAGCAGGCGATAATGCCAGTGAAATGATGTCGGGCTTCAAA
Found at i:46381842 original size:16 final size:18
Alignment explanation
Indices: 46381811--46381843 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
46381801 AACTCGTCAC
46381811 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
46381829 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
46381844 AGCTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:46384204 original size:25 final size:25
Alignment explanation
Indices: 46384148--46384255 Score: 166
Period size: 25 Copynumber: 4.4 Consensus size: 25
46384138 CTGGAGGCCT
46384148 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
46384172 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
46384197 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
* *
46384222 AGCCCTTTTAATAGACTAGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
46384247 AGCCCTTTT
1 AGCCCTTTT
46384256 TGCACTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 7 0.09
24 13 0.17
25 58 0.74
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:46384326 original size:20 final size:20
Alignment explanation
Indices: 46384303--46384349 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
46384293 TTATGACTAC
46384303 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
46384322 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
46384343 ATCATGT
1 ATCATGT
46384350 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:46384428 original size:25 final size:25
Alignment explanation
Indices: 46384385--46384432 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46384375 ATAATTAAAC
* **
46384385 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACAGTCATTTTTA
46384410 CCTAGGGGTAAAACAGTCATTTT
1 CCTAGGGGTAAAACAGTCATTTT
46384433 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTCATTTTTA
Found at i:46391664 original size:19 final size:19
Alignment explanation
Indices: 46391642--46391680 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
46391632 ATAATGTCGG
46391642 TGAGATACTATTCGGGCCT
1 TGAGATACTATTCGGGCCT
46391661 TGAGATACTATTCGGGCCT
1 TGAGATACTATTCGGGCCT
46391680 T
1 T
46391681 CGAGCCTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (19 bp):
TGAGATACTATTCGGGCCT
Found at i:46393568 original size:21 final size:21
Alignment explanation
Indices: 46393542--46393591 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
46393532 TCTAGCAAGG
*
46393542 GCGTGTCCTAAAGTCACACGG
1 GCGTGTCCTAAAGTCACACGA
*
46393563 GTGTGTCCTAAAGTCACACGA
1 GCGTGTCCTAAAGTCACACGA
46393584 GCGTGTCC
1 GCGTGTCC
46393592 CTTAGACTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (21 bp):
GCGTGTCCTAAAGTCACACGA
Found at i:46394412 original size:25 final size:24
Alignment explanation
Indices: 46394376--46394427 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
46394366 CTCAAACGCA
*
46394376 GCTCTTTATGAGCGTCTTGATATAG
1 GCTCTTTATGAGCGTCCTGATAT-G
*
46394401 GCTCTTCT-TGAGCTTCCTGATATG
1 GCTCTT-TATGAGCGTCCTGATATG
46394425 GCT
1 GCT
46394428 TGCTTGAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.17
25 19 0.79
26 1 0.04
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGATATG
Found at i:46401315 original size:39 final size:39
Alignment explanation
Indices: 46401149--46401360 Score: 183
Period size: 38 Copynumber: 5.6 Consensus size: 39
46401139 GAATGATGTC
* * * * *
46401149 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAATT
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
* * *
46401188 CGGATTTAA-T-CCGAAGGCATTTGTGCGAGATACTAATT
1 CGG-GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
46401226 CCGGG-TAAG--CCGAAGGCATTGGTGCGAG-TACTAAAT
1 -CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
46401262 CCGGTTAAGTCCCGAA-GCATTTGTGCGAGTTACAAAAT
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
46401300 CTGGGTTAAGTCCCGAAGGCATTT-TGCGAGTTACTATAA-
1 C-GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* * *
46401339 CCGGCTATGTCCCGAAGGCATT
1 CGGGTTAAGTCCCGAAGGCATT
46401361 GAACGAGGCT
Statistics
Matches: 145, Mismatches: 17, Indels: 23
0.78 0.09 0.12
Matches are distributed among these distances:
35 3 0.02
36 11 0.08
37 33 0.23
38 47 0.32
39 40 0.28
40 11 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:46401335 original size:77 final size:75
Alignment explanation
Indices: 46401198--46401360 Score: 197
Period size: 77 Copynumber: 2.1 Consensus size: 75
46401188 CGGATTTAAT
* *
46401198 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTAAGCCGAAGGCATTGGTGCGAGTACTA-AAT
1 CCGAAGGCATTTGTGCGAGATACAAAATCCGGGTAAGCCGAAGGCATTGGTGCGAGTACTATAA-
*
46401262 CCGGTTAAGTC
65 CCGGCTAAGTC
* * *
46401273 CCGAA-GCATTTGTGCGAGTTACAAAATCTGGGTTAAGTCCCGAAGGCATT-TTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACAAAATCCGGG-TAAG--CCGAAGGCATTGGTGCGAG-TACTA
*
46401336 TAACCGGCTATGTC
62 TAACCGGCTAAGTC
46401350 CCGAAGGCATT
1 CCGAAGGCATT
46401361 GAACGAGGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
74 23 0.31
75 9 0.12
76 6 0.08
77 30 0.40
78 7 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (75 bp):
CCGAAGGCATTTGTGCGAGATACAAAATCCGGGTAAGCCGAAGGCATTGGTGCGAGTACTATAAC
CGGCTAAGTC
Found at i:46409002 original size:74 final size:78
Alignment explanation
Indices: 46408901--46409079 Score: 190
Period size: 74 Copynumber: 2.3 Consensus size: 78
46408891 TGTCCGGGCT
* * * ***
46408901 ATCCGGATTAAGATCCGAAGGCTTTTGTGCGAG-TACTATTCCGGACTAAG-CCGAAGGCA-TTG
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AAAGGACTAAGCCCGAAGGCATTTG
46408963 TGCGAGATACTA-A
65 TGCGAGATACTATA
**
46408976 ATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAAAGGGTTAAGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAAAAGGACTAAG-CCCGAAGGCATTTG
*
46409040 TGCGAGTTACTATA
65 TGCGAGATACTATA
* * *
46409054 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGTTAAGACCCGAAGGCATTTG
46409080 AACGAGGAGC
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
74 24 0.28
75 16 0.18
76 9 0.10
77 22 0.25
78 16 0.18
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAAAAGGACTAAGCCCGAAGGCATTTGT
GCGAGATACTATA
Found at i:46409079 original size:40 final size:38
Alignment explanation
Indices: 46408915--46409079 Score: 185
Period size: 38 Copynumber: 4.3 Consensus size: 38
46408905 GGATTAAGAT
* ** *
46408915 CCGAAGGCTTTTGTGCGAG-TACTATTCCGGACTAAG-
1 CCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGC
* *
46408951 CCGAAGGCA-TTGTGCGAGATACTAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAA-CCGGGCTAAGC
* *
46408989 CCGAAGGCATTTGTGCGAGTTACTAAA-AGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAG-C
*
46409027 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAG-C
46409067 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46409080 AACGAGGAGC
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
35 9 0.08
36 13 0.12
37 16 0.14
38 35 0.31
39 18 0.16
40 21 0.19
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGC
Found at i:46410866 original size:46 final size:46
Alignment explanation
Indices: 46410797--46410928 Score: 185
Period size: 46 Copynumber: 2.9 Consensus size: 46
46410787 ATAATCTCAC
* *
46410797 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGGTG-TTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTT-GCAT
* *
46410843 CCATAATGAACTCGAAACACAACTCAACGAGTTCGGATGCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTGCAT
** *
46410889 CCATGGTGAACTTGGAACGCAACTCAACGAGTTCGGATGC
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGC
46410929 CTCATAATTC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
46 74 0.97
47 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTGCAT
Found at i:46413220 original size:27 final size:27
Alignment explanation
Indices: 46413176--46413334 Score: 230
Period size: 27 Copynumber: 5.9 Consensus size: 27
46413166 AAGCTAACAT
* * *
46413176 AGAATTACCGTTTCACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
46413203 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
46413230 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
46413257 AGAATTACCATTTTACCCTCAATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
46413284 AAAATTACCATTTTACCCTC-AGTTTAC
1 AGAATTACCATTTTACCCTCGA-TTTAC
* *
46413311 AAAATTATCATTTTACCCTCGATT
1 AGAATTACCATTTTACCCTCGATT
46413335 GTGAAATTAC
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
26 1 0.01
27 120 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:46413356 original size:27 final size:27
Alignment explanation
Indices: 46413333--46413516 Score: 212
Period size: 27 Copynumber: 6.8 Consensus size: 27
46413323 TTACCCTCGA
* **
46413333 TTGTGAAATTACTGAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
46413360 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
46413387 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
46413414 TTGTAAAATTACTAAAATACCTCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * * *
46413441 TTATGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
* *
46413468 TTGTAAAATTAACAAAATACCCCT-GA
1 TTGTAAAATTACCAAAATACCCCTAGT
*
46413494 TT-TACAAAGTTACAAAAATACCC
1 TTGTA-AAA-TTACCAAAATACCC
46413517 TTGACTTTCT
Statistics
Matches: 134, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.01
26 8 0.06
27 120 0.90
28 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:46413567 original size:27 final size:27
Alignment explanation
Indices: 46413528--46413579 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
46413518 TGACTTTCTA
46413528 AAAATTATAGAAACACCATTGGTTTAC
1 AAAATTATAGAAACACCATTGGTTTAC
*
46413555 AAAATTACT-GAAATACCATTGGTTT
1 AAAATTA-TAGAAACACCATTGGTTT
46413580 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (27 bp):
AAAATTATAGAAACACCATTGGTTTAC
Found at i:46414409 original size:20 final size:20
Alignment explanation
Indices: 46414375--46414450 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
46414365 GATACGTAGG
46414375 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
46414392 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
46414413 GTATGATATGCAGATGATAT
1 GTATGATATGCACATGATAT
*
46414433 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
46414451 GAATTCATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 41 0.79
21 2 0.04
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:46414578 original size:52 final size:51
Alignment explanation
Indices: 46414500--46414622 Score: 187
Period size: 52 Copynumber: 2.4 Consensus size: 51
46414490 GAGGAAGTGC
*
46414500 AAAAGGGCTTATGCCCTAGTTTATTGAAAATGGCTTAT-CCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTT-TGCCC-CAGTTTACCG
*
46414552 AAAAGAGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
46414603 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCTAGTT
46414623 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
50 9 0.14
51 20 0.30
52 37 0.56
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:46414597 original size:25 final size:26
Alignment explanation
Indices: 46414500--46414622 Score: 144
Period size: 26 Copynumber: 4.8 Consensus size: 26
46414490 GAGGAAGTGC
* **
46414500 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
46414526 AAAATGGCTTAT-CCCTCAGTTTACCG
1 AAAAGGGCTTATGCCC-CAGTTTACCG
* * **
46414552 AAAAGAGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
46414578 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
46414603 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
46414623 ATTAAAGAGG
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
25 35 0.43
26 44 0.54
27 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:46414826 original size:42 final size:42
Alignment explanation
Indices: 46414766--46414857 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
46414756 TAGTCTCCCC
* *
46414766 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCACACATTCATTGATATTTCATGTGATATTG
*
46414808 AAATGGGCTTGCACACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCACACATTCATTGATATTTCATGTGATATTG
*
46414850 ATATGGGC
1 AAATGGGC
46414858 CTGTGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCACACATTCATTGATATTTCATGTGATATTG
Found at i:46414916 original size:31 final size:31
Alignment explanation
Indices: 46414881--46414959 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
46414871 CGTTTATAAT
46414881 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
46414912 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
46414943 AAAGGCTTCGTCCCAGT
1 AAAGGCTTCGGCCCAGT
46414960 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:46419789 original size:17 final size:18
Alignment explanation
Indices: 46419767--46419808 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
46419757 CATGTTTACA
46419767 TGGTTGAGTA-AATGA-TG
1 TGGTTGA-TATAATGATTG
*
46419784 TGGTTGATATATTGATTG
1 TGGTTGATATAATGATTG
46419802 TGGTTGA
1 TGGTTGA
46419809 CATATTCAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (18 bp):
TGGTTGATATAATGATTG
Found at i:46424233 original size:18 final size:17
Alignment explanation
Indices: 46424208--46424249 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
46424198 TAACATTAGC
* *
46424208 TTCTTTTATTTTTATTT
1 TTCTTTTATGTTTATGT
46424225 TTACTTTTATGTTTATGT
1 TT-CTTTTATGTTTATGT
46424243 TTCTTTT
1 TTCTTTT
46424250 TCTTCTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.76
Consensus pattern (17 bp):
TTCTTTTATGTTTATGT
Found at i:46424249 original size:24 final size:23
Alignment explanation
Indices: 46424211--46424274 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
46424201 CATTAGCTTC
*
46424211 TTTTATTTTTATTTTTACTT-TTATG
1 TTTTA-TTTTCTTTTT-CTTCTT-TG
46424236 -TTTATGTTTCTTTTTCTTCTTTG
1 TTTTAT-TTTCTTTTTCTTCTTTG
46424259 TTTCTATTTTCTTTTT
1 TTT-TATTTTCTTTTT
46424275 GATTCTCTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
23 6 0.18
24 25 0.74
25 3 0.09
ACGTcount: A:0.09, C:0.09, G:0.05, T:0.77
Consensus pattern (23 bp):
TTTTATTTTCTTTTTCTTCTTTG
Found at i:46424260 original size:17 final size:16
Alignment explanation
Indices: 46424240--46424285 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 16
46424230 TTTATGTTTA
46424240 TGTTTCTTTTTCTTCTT
1 TGTTTCTTTTTCTT-TT
46424257 TGTTTCTATTTTCTTTT
1 TGTTTCT-TTTTCTTTT
46424274 TGATTCTCTTTT
1 TG-TT-TCTTTT
46424286 ACTGTGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 11 0.42
18 12 0.46
19 3 0.12
ACGTcount: A:0.04, C:0.15, G:0.07, T:0.74
Consensus pattern (16 bp):
TGTTTCTTTTTCTTTT
Found at i:46425050 original size:103 final size:102
Alignment explanation
Indices: 46424910--46425154 Score: 296
Period size: 103 Copynumber: 2.4 Consensus size: 102
46424900 CACAGCTAAG
* * * *
46424910 AACACGGGTATGTGCCTAGGCCGTGTAACTCACTGTTTGTGGCACAAGACCACACGGATAAGGAC
1 AACACGGGTGTGT-CC-AGGCCGTGTAATTCATTGTTTGTGGCACAAGACAACACGGATAAGGAC
*
46424975 ACGAGG-ATGTGTCCAGGTCATATGAGTCACACGGGCAGA
64 ACG-GGCATGTGTCCAGGTCATATGAGTCACACGAGCAGA
* * **
46425014 AACACGGTGTGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGGCAACACGGCTTGGGACA
1 AACACGG-GTGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGACAACACGGATAAGGACA
* * *
46425079 CGGGCGTGTGTCTAGGTCATATGAGTCCCACGAGCAGA
65 CGGGCATGTGTCCAGGTCATATGAGTCACACGAGCAGA
*
46425117 AACATGGGCATGTGTCCAGGCCGTGTAACTT-ATTGTTT
1 AACACGGG--TGTGTCCAGGCCGTGTAA-TTCATTGTTT
46425155 ATGCTTCGAA
Statistics
Matches: 123, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
102 3 0.02
103 79 0.64
104 34 0.28
105 7 0.06
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.23
Consensus pattern (102 bp):
AACACGGGTGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGACAACACGGATAAGGACAC
GGGCATGTGTCCAGGTCATATGAGTCACACGAGCAGA
Found at i:46437662 original size:44 final size:44
Alignment explanation
Indices: 46437597--46437681 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
46437587 TTGATATCTC
* *
46437597 AAAGTCCATGGTTGTACCATGGAAATAAAGGAAGAATTGACCGA
1 AAAGTCCATGGTTATAACATGGAAATAAAGGAAGAATTGACCGA
* * * *
46437641 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGAC
1 AAAGTCCATGGTT-ATAACATGGAAATAAAGGAAGAATTGAC
46437682 GGTTAAGGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATAAAGGAAGAATTGACCGA
Found at i:46437877 original size:44 final size:47
Alignment explanation
Indices: 46437815--46437933 Score: 199
Period size: 44 Copynumber: 2.6 Consensus size: 47
46437805 GCATTGGCAC
*
46437815 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
46437862 T-A-A-AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
46437906 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
46437934 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
44 42 0.62
45 2 0.03
46 2 0.03
47 22 0.32
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:46438042 original size:55 final size:54
Alignment explanation
Indices: 46437912--46438129 Score: 233
Period size: 54 Copynumber: 4.0 Consensus size: 54
46437902 TTGGTAAGAT
* * * * *
46437912 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATTAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* **
46437966 AAGGAAACCATGTAAGACCATGTAAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-A
* * * * *
46438022 AAGG-TCCCATGTAAGGCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* * * * * *
46438074 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTGAGTTCAAAAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
46438128 AA
1 AA
46438130 AGGTTCCTGA
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 41 0.30
54 47 0.35
55 40 0.29
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
Found at i:46438117 original size:108 final size:108
Alignment explanation
Indices: 46437920--46438133 Score: 313
Period size: 108 Copynumber: 2.0 Consensus size: 108
46437910 ATAAGGATAT
* *
46437920 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATTAGGCAAGGAAACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * *
46437985 ATGTAAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
66 ATGTAAAGACATGGCAATGATGAGTT-CAAAAAGGAAAAGGTCC
* * * *
46438029 CATGTAAGGCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* *
46438093 ATGTCAAGACATGGCAATGGTGAGTTCAAAAAGGAAAAGGT
66 ATGTAAAGACATGGCAATGATGAGTTCAAAAAGGAAAAGGT
46438134 TCCTGAGTAA
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
107 13 0.14
108 46 0.49
109 35 0.37
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTAAAGACATGGCAATGATGAGTTCAAAAAGGAAAAGGTCC
Found at i:46438243 original size:16 final size:17
Alignment explanation
Indices: 46438222--46438254 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
46438212 CTTATTTAAT
46438222 ATTGAGATTGT-AAGTA
1 ATTGAGATTGTCAAGTA
46438238 ATTGAGATTGTCAAGTA
1 ATTGAGATTGTCAAGTA
46438255 CTAAGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.36
Consensus pattern (17 bp):
ATTGAGATTGTCAAGTA
Found at i:46441056 original size:43 final size:39
Alignment explanation
Indices: 46440995--46441102 Score: 141
Period size: 36 Copynumber: 2.7 Consensus size: 39
46440985 TTTTCTCAAA
* *
46440995 TCACCGGCATTGTAGCCTGCTAGGCTCGAGGCCCGATATCATT
1 TCACCGGCTTTATAGCCTGCTAGGCTCGA----CGATATCATT
46441038 TCACCGGCTTTATAGCCTGCTAGGCT---CGATATCATT
1 TCACCGGCTTTATAGCCTGCTAGGCTCGACGATATCATT
46441074 TCACCGGCTTTATAGCCTGCTAGGCTCGA
1 TCACCGGCTTTATAGCCTGCTAGGCTCGA
46441103 AAGCCCGAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
36 36 0.60
43 24 0.40
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.29
Consensus pattern (39 bp):
TCACCGGCTTTATAGCCTGCTAGGCTCGACGATATCATT
Found at i:46441075 original size:36 final size:36
Alignment explanation
Indices: 46441023--46441102 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
46441013 GCTAGGCTCG
*
46441023 AGGCCCGATATCATTTCACCGGCTTTATAGCCTGCT
1 AGGCTCGATATCATTTCACCGGCTTTATAGCCTGCT
46441059 AGGCTCGATATCATTTCACCGGCTTTATAGCCTGCT
1 AGGCTCGATATCATTTCACCGGCTTTATAGCCTGCT
46441095 AGGCTCGA
1 AGGCTCGA
46441103 AAGCCCGAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (36 bp):
AGGCTCGATATCATTTCACCGGCTTTATAGCCTGCT
Found at i:46441619 original size:38 final size:38
Alignment explanation
Indices: 46441577--46441738 Score: 200
Period size: 38 Copynumber: 4.2 Consensus size: 38
46441567 GCACTAGGCT
* *
46441577 TGCGGGATTTATA-CCAGATATAATACCAGCATGAAGCC
1 TGCGGGATTTA-ACCCGGATATAATACCAGCACGAAGCC
* ** *
46441615 TGCGGGATTTAGCCCGGATATTTTACCAGTACGAAGCC
1 TGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
*
46441653 TGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCC
1 TGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCC
**
46441693 TGCGGGATTTAACCCGGATATAATACCAGCAATAAGCC
1 TGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
*
46441731 TGCCGGAT
1 TGCGGGAT
46441739 ATACATCGAA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
38 68 0.64
39 9 0.08
40 29 0.27
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (38 bp):
TGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
Found at i:46443813 original size:39 final size:40
Alignment explanation
Indices: 46443736--46443922 Score: 121
Period size: 40 Copynumber: 4.7 Consensus size: 40
46443726 TAGCTCCTCG
* * *
46443736 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
46443776 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
46443815 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * * *
46443855 CACAAAGGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
46443895 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
46443923 ATTAATAACT
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 27 0.20
40 105 0.80
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:46443831 original size:40 final size:40
Alignment explanation
Indices: 46443779--46444002 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
46443769 TAACTCATTC
* *
46443779 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
46443819 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
46443859 AAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
*
46443899 AAGGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
* ** ** *
46443939 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
46443980 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46444003 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 8 0.05
40 141 0.88
41 11 0.07
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:46443841 original size:79 final size:80
Alignment explanation
Indices: 46443742--46444002 Score: 228
Period size: 80 Copynumber: 3.3 Consensus size: 80
46443732 CTCGTTCAAG
* * * ** * *
46443742 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
46443805 TTA-AAACTCGCACGAA
64 TTAGAAACTCGCACAAA
* *
46443821 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
* *
46443886 AGTATCTCGCACAAA
66 AGAAACTCGCACAAA
* * * ** **
46443901 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGG-AT
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGA-CTTAACCCGGAAT
** *
46443964 ATAGTCACTTAGCACAAA
65 -TAGAAAC-TCGCACAAA
*
46443982 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
46444003 CAGCATTCAA
Statistics
Matches: 153, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
79 36 0.24
80 109 0.71
81 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AGAAACTCGCACAAA
Found at i:46443933 original size:120 final size:120
Alignment explanation
Indices: 46443782--46444002 Score: 299
Period size: 120 Copynumber: 1.8 Consensus size: 120
46443772 CTCATTCAAT
* * *
46443782 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
46443845 TAGT-A-TCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
64 TAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
**
46443902 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATAT
*
46443966 AGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 AGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
46444003 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
119 7 0.08
120 71 0.80
121 10 0.11
122 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:46451753 original size:39 final size:40
Alignment explanation
Indices: 46451676--46451862 Score: 121
Period size: 40 Copynumber: 4.7 Consensus size: 40
46451666 TAGCTCCTCG
* * *
46451676 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
46451716 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
46451755 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * * *
46451795 CACAAAGGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
46451835 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
46451863 ATTAATAACT
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 27 0.20
40 105 0.80
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:46451771 original size:40 final size:40
Alignment explanation
Indices: 46451719--46451942 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
46451709 TAACTCATTC
* *
46451719 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
46451759 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
46451799 AAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
*
46451839 AAGGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
* ** ** *
46451879 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
46451920 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46451943 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 8 0.05
40 141 0.88
41 11 0.07
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:46451781 original size:79 final size:80
Alignment explanation
Indices: 46451682--46451942 Score: 228
Period size: 80 Copynumber: 3.3 Consensus size: 80
46451672 CTCGTTCAAG
* * * ** * *
46451682 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
46451745 TTA-AAACTCGCACGAA
64 TTAGAAACTCGCACAAA
* *
46451761 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
* *
46451826 AGTATCTCGCACAAA
66 AGAAACTCGCACAAA
* * * ** **
46451841 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGG-AT
1 TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGA-CTTAACCCGGAAT
** *
46451904 ATAGTCACTTAGCACAAA
65 -TAGAAAC-TCGCACAAA
*
46451922 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
46451943 CAGCATTCAA
Statistics
Matches: 153, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
79 36 0.24
80 109 0.71
81 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AGAAACTCGCACAAA
Found at i:46451873 original size:120 final size:120
Alignment explanation
Indices: 46451722--46451942 Score: 299
Period size: 120 Copynumber: 1.8 Consensus size: 120
46451712 CTCATTCAAT
* * *
46451722 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
46451785 TAGT-A-TCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
64 TAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
**
46451842 GCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATAT
*
46451906 AGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 AGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
46451943 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
119 7 0.08
120 71 0.80
121 10 0.11
122 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:46458515 original size:43 final size:43
Alignment explanation
Indices: 46458454--46458565 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
46458444 CCGGCATTAC
* *
46458454 GCCTGCTAGGCACGAAGGCCTGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
46458497 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
46458540 GCCTGCTAAGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
46458566 TAATACCAGC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:46458605 original size:38 final size:38
Alignment explanation
Indices: 46458558--46458759 Score: 233
Period size: 38 Copynumber: 5.3 Consensus size: 38
46458548 AGCACGAAGG
* * * * *
46458558 CCCGAATATAATACCAGCACTAGGCCTGTGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
46458596 CCTGGATATAATACCAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * **
46458634 CCCGGATATTTTACCAGTACGAAGCCTGCAGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGC-GGGATTTAA
* *
46458673 GCCCGGATACAATACCAGCACGAAGCCTGCGAGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
46458712 CCCAGATATAATACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
46458750 CCCAGATATA
1 CCCGGATATA
46458760 CATCGAATAT
Statistics
Matches: 137, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
38 99 0.72
39 13 0.09
40 25 0.18
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:46458761 original size:78 final size:77
Alignment explanation
Indices: 46458563--46458761 Score: 215
Period size: 78 Copynumber: 2.6 Consensus size: 77
46458553 GAAGGCCCGA
* * * *
46458563 ATATAATACCAGCACTAGGCCTGTGGGATTTATCCTGGATAT--AATACCAGCACGAAGCCTACG
1 ATATAATACCAGCACGAAGCCTGTGGGATTTAACC-CGATATACAATACCAGCACGAAGCCTACG
* *
46458626 GGATTTAACCCGG
65 AGATTTAACCCAG
** * * ** * *
46458639 ATATTTTACCAGTACGAAGCCTGCAGGTCTTTAAGCCCG-GATACAATACCAGCACGAAGCCTGC
1 ATATAATACCAGCACGAAGCCTG-TGGGATTTAA-CCCGATATACAATACCAGCACGAAGCCTAC
46458703 GAGATTTAACCCAG
64 GAGATTTAACCCAG
46458717 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCCAGATATACA
1 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCC-GATATACA
46458762 TCGAATATCA
Statistics
Matches: 96, Mismatches: 21, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
76 23 0.24
77 15 0.16
78 58 0.60
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (77 bp):
ATATAATACCAGCACGAAGCCTGTGGGATTTAACCCGATATACAATACCAGCACGAAGCCTACGA
GATTTAACCCAG
Found at i:46463332 original size:17 final size:16
Alignment explanation
Indices: 46463306--46463337 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
46463296 CACGAAAAAG
46463306 TAAACTTAGTAAGCTA
1 TAAACTTAGTAAGCTA
46463322 TAAAGCTTAGTAAGCT
1 TAAA-CTTAGTAAGCT
46463338 CTTATAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (16 bp):
TAAACTTAGTAAGCTA
Found at i:46469233 original size:19 final size:20
Alignment explanation
Indices: 46469199--46469239 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
46469189 CTAGACAGGT
* *
46469199 AACTTAGGAAAGTTTTAGAA
1 AACTTAGGAAAATTTTACAA
46469219 AACTTA-GAAAATTTTACAA
1 AACTTAGGAAAATTTTACAA
46469238 AA
1 AA
46469240 TATAGGGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.29
Consensus pattern (20 bp):
AACTTAGGAAAATTTTACAA
Found at i:46473000 original size:11 final size:10
Alignment explanation
Indices: 46472980--46473009 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
46472970 TAATTTTAGG
46472980 TTTAGTTTTC
1 TTTAGTTTTC
46472990 TTTATGTTTTC
1 TTTA-GTTTTC
46473001 TTTAGTTTT
1 TTTAGTTTT
46473010 TCTCTGTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (10 bp):
TTTAGTTTTC
Found at i:46483886 original size:40 final size:40
Alignment explanation
Indices: 46483826--46483941 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
46483816 ATTAGTGGCA
* * *
46483826 CTTTTTCAAGAAACGCTGCTATAGATCGAG-ATTTAGCTACG
1 CTTTTTGAA-AAACACTGCTATAGATCGAGCA-TTAGCGACG
*
46483867 CTTTTTGAAAAACACTGCTATAGATCGAGCATTAGCGGCG
1 CTTTTTGAAAAACACTGCTATAGATCGAGCATTAGCGACG
* *
46483907 CTTTTTGAAAAACACCGCTATAGGTCGAGCATTAG
1 CTTTTTGAAAAACACTGCTATAGATCGAGCATTAG
46483942 TGGTGTTTTT
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
40 59 0.87
41 9 0.13
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (40 bp):
CTTTTTGAAAAACACTGCTATAGATCGAGCATTAGCGACG
Found at i:46484015 original size:196 final size:196
Alignment explanation
Indices: 46483678--46484035 Score: 479
Period size: 196 Copynumber: 1.8 Consensus size: 196
46483668 GTGTTATTAT
* * * ** *
46483678 AAAAACACCGCTACAGATTGAGCATTAGCAGTGCTTTTTGGAAAACGTCGCTATAGGTCGAGTAT
1 AAAAACACCGCTACAGATCGAGCATTAGCAGCGCTTTTTGAAAAACACCGCTATAGGTCGAGCAT
* *
46483743 TAGTCGAGTTTTTCAAAAAACATGGCAAAATAATTCATCAACACACCGTCCTTTTTTTTTTAGCC
66 TAGTCGAGTTTTTCAAAAAACATGGCAAAATAATTCATCAACACACCGTCCTTTTTTGTTGAGCC
* *
46483808 TTCAGGGCATTAGTGGCACTTTTTCAAGAAACGCTGCTATAGATCGAGATTTAGCTACGCTTTTT
131 TTCAGGGCATTAGCGGCACTTTTTCAAAAAACGCTGCTATAGATCGAGATTTAGCTACGCTTTTT
46483873 G
196 G
* * *
46483874 AAAAACACTGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGGTCGAGCAT
1 AAAAACACCGCTACAGATCGAGCATTAGCAGCGCTTTTTGAAAAACACCGCTATAGGTCGAGCAT
* * * * ** *
46483939 TAGTGGTGTTTTT-TAAAAA-ATGCCGCAAAATAATTCATCAGCACGTCGTCGTTTTTTGTTGAG
66 TAGTCGAGTTTTTCAAAAAACATG--GCAAAATAATTCATCAACACACCGTCCTTTTTTGTTGAG
*
46484002 CCTT-AGTGGCATTAGCGGCGCTTTTTCAAAAAAC
129 CCTTCAG-GGCATTAGCGGCACTTTTTCAAAAAAC
46484036 ACCGCAAAAA
Statistics
Matches: 138, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
194 3 0.02
195 7 0.05
196 128 0.93
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (196 bp):
AAAAACACCGCTACAGATCGAGCATTAGCAGCGCTTTTTGAAAAACACCGCTATAGGTCGAGCAT
TAGTCGAGTTTTTCAAAAAACATGGCAAAATAATTCATCAACACACCGTCCTTTTTTGTTGAGCC
TTCAGGGCATTAGCGGCACTTTTTCAAAAAACGCTGCTATAGATCGAGATTTAGCTACGCTTTTT
G
Found at i:46484406 original size:22 final size:22
Alignment explanation
Indices: 46484381--46484525 Score: 84
Period size: 22 Copynumber: 6.6 Consensus size: 22
46484371 AAGTTAATAT
46484381 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTATGGG
* * *
46484403 TTTAAGATTTAAGGTTTA-GGAG
1 TTTAAGGTTTATGGATTATGG-G
* **
46484425 TTTATGGTTTAT-GAGTTAAT-AT
1 TTTAAGGTTTATGGA-TT-ATGGG
*
46484447 TTTAAGGTTTATGGATTATGGA
1 TTTAAGGTTTATGGATTATGGG
* * *
46484469 TTTAGGGGTTATGGTTTAT-GG
1 TTTAAGGTTTATGGATTATGGG
* * * *
46484490 TTTAAAGGTTGA-GGTTTAAGGT
1 TTT-AAGGTTTATGGATTATGGG
*
46484512 TTTAGGGTTTATGG
1 TTTAAGGTTTATGG
46484526 TTTAGAGGTT
Statistics
Matches: 91, Mismatches: 23, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
21 21 0.23
22 67 0.74
23 3 0.03
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTATGGATTATGGG
Found at i:46484434 original size:7 final size:7
Alignment explanation
Indices: 46484381--46484529 Score: 84
Period size: 7 Copynumber: 20.6 Consensus size: 7
46484371 AAGTTAATAT
*
46484381 TTTAAGG
1 TTTATGG
46484388 TTTATGG
1 TTTATGG
*
46484395 ATTATGGG
1 TTTAT-GG
* *
46484403 TTTAAGA
1 TTTATGG
*
46484410 TTTAAGG
1 TTTATGG
*
46484417 TTTAGGAG
1 TTTATG-G
46484425 TTTATGG
1 TTTATGG
46484432 TTTATGAG
1 TTTATG-G
* **
46484440 TTAATAT
1 TTTATGG
*
46484447 TTTAAGG
1 TTTATGG
46484454 TTTATGG
1 TTTATGG
*
46484461 ATTATGG
1 TTTATGG
*
46484468 ATTTAGGG
1 -TTTATGG
*
46484476 GTTATGG
1 TTTATGG
46484483 TTTATGG
1 TTTATGG
*
46484490 TTTAAAGG
1 TTT-ATGG
*
46484498 TTGA-GG
1 TTTATGG
*
46484504 TTTAAGG
1 TTTATGG
*
46484511 TTTTAGGG
1 -TTTATGG
46484519 TTTATGG
1 TTTATGG
46484526 TTTA
1 TTTA
46484530 GAGGTTAAGA
Statistics
Matches: 108, Mismatches: 27, Indels: 14
0.72 0.18 0.09
Matches are distributed among these distances:
6 5 0.05
7 71 0.66
8 32 0.30
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (7 bp):
TTTATGG
Found at i:46484443 original size:29 final size:29
Alignment explanation
Indices: 46484382--46484443 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
46484372 AGTTAATATT
*
46484382 TTAAGGTTTATGGATTATGGGTTTAAGAT
1 TTAAGGTTTATGGATTATGGGTTTAAGAG
*
46484411 TTAAGGTTTA-GGAGTTTAT-GGTTTATGAG
1 TTAAGGTTTATGGA--TTATGGGTTTAAGAG
46484440 TTAA
1 TTAA
46484444 TATTTTAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 3 0.10
29 22 0.76
30 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (29 bp):
TTAAGGTTTATGGATTATGGGTTTAAGAG
Found at i:46484535 original size:15 final size:14
Alignment explanation
Indices: 46484381--46484565 Score: 70
Period size: 15 Copynumber: 12.8 Consensus size: 14
46484371 AAGTTAATAT
*
46484381 TTTAAGGTTTATGG
1 TTTAGGGTTTATGG
* * *
46484395 ATTATGGGTTTAAGA
1 TTTA-GGGTTTATGG
* *
46484410 TTTAAGGTTTAGGAG
1 TTTAGGGTTTATG-G
*
46484425 TTTATGGTTTATGAG
1 TTTAGGGTTTATG-G
* *** *
46484440 TTAATATTTTAAGG
1 TTTAGGGTTTATGG
* *
46484454 TTTATGGATTATGG
1 TTTAGGGTTTATGG
*
46484468 ATTTAGGGGTTATGG
1 -TTTAGGGTTTATGG
* *
46484483 TTTATGGTTTAAAGG
1 TTTAGGGTTT-ATGG
* *
46484498 TTGA-GGTTTAAGG
1 TTTAGGGTTTATGG
46484511 TTTTAGGGTTTATGG
1 -TTTAGGGTTTATGG
*
46484526 TTTAGAGG-TTAAGAG
1 TTTAG-GGTTTATG-G
*
46484541 TTAAGGG-TTATGG
1 TTTAGGGTTTATGG
*
46484554 GTTAGGGCTTTA
1 TTTAGGG-TTTA
46484566 GGGGTTAAGG
Statistics
Matches: 129, Mismatches: 32, Indels: 19
0.72 0.18 0.11
Matches are distributed among these distances:
13 10 0.08
14 51 0.40
15 68 0.53
ACGTcount: A:0.24, C:0.01, G:0.31, T:0.44
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:46484537 original size:29 final size:28
Alignment explanation
Indices: 46484424--46484538 Score: 90
Period size: 29 Copynumber: 4.0 Consensus size: 28
46484414 AGGTTTAGGA
* * **
46484424 GTTTATGGTTTATGAGTTAATATTTTAAG
1 GTTTATGGTTTATG-GTTTAGAGGTTAAG
* * *
46484453 GTTTATGGATTATGGATTTAGGGGTTATG
1 GTTTATGGTTTATGG-TTTAGAGGTTAAG
*
46484482 GTTTATGGTTTAAAGG-TT-GAGGTTTAAG
1 GTTTATGGTTT-ATGGTTTAGAGG-TTAAG
*
46484510 GTTTTAGGGTTTATGGTTTAGAGGTTAAG
1 G-TTTATGGTTTATGGTTTAGAGGTTAAG
46484539 AGTTAAGGGT
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
27 3 0.04
28 11 0.16
29 46 0.69
30 7 0.10
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.46
Consensus pattern (28 bp):
GTTTATGGTTTATGGTTTAGAGGTTAAG
Found at i:46484556 original size:36 final size:36
Alignment explanation
Indices: 46484469--46484584 Score: 105
Period size: 36 Copynumber: 3.2 Consensus size: 36
46484459 GGATTATGGA
* * *
46484469 TTTAGGGGTTAT-GGTTTATGGTTTAAAGGTTGAGG
1 TTTAAGGGTTATGGGTTTATGGTTTAGAGGTTAAGG
*
46484504 TTTAA-GGTTTTAGGGTTTATGGTTTAGAGGTTAAGAG
1 TTTAAGGGTTAT-GGGTTTATGGTTTAGAGGTTAAG-G
* *
46484541 -TTAAGGGTTATGGG-TTAGGGCTTTAGGGGTTAAGG
1 TTTAAGGGTTATGGGTTTATGG-TTTAGAGGTTAAGG
*
46484576 CATTAAGGG
1 -TTTAAGGG
46484585 GACAAGGGTT
Statistics
Matches: 67, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
34 5 0.07
35 10 0.15
36 39 0.58
37 13 0.19
ACGTcount: A:0.22, C:0.02, G:0.37, T:0.39
Consensus pattern (36 bp):
TTTAAGGGTTATGGGTTTATGGTTTAGAGGTTAAGG
Found at i:46488698 original size:9 final size:9
Alignment explanation
Indices: 46488672--46488738 Score: 71
Period size: 9 Copynumber: 7.4 Consensus size: 9
46488662 GTTTAAATTT
*
46488672 CATAACTTA
1 CATAACTCA
*
46488681 CAAAACTCA
1 CATAACTCA
*
46488690 CATACCTCA
1 CATAACTCA
*
46488699 CATAACTTA
1 CATAACTCA
46488708 CATAACTCA
1 CATAACTCA
*
46488717 CATAACTTA
1 CATAACTCA
* *
46488726 GATAACTTA
1 CATAACTCA
46488735 CATA
1 CATA
46488739 TATAATACAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (9 bp):
CATAACTCA
Found at i:46488714 original size:27 final size:27
Alignment explanation
Indices: 46488672--46488738 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
46488662 GTTTAAATTT
* *
46488672 CATAACTTACAAAACTCACATACCTCA
1 CATAACTTACATAACTCACATAACTCA
*
46488699 CATAACTTACATAACTCACATAACTTA
1 CATAACTTACATAACTCACATAACTCA
*
46488726 GATAACTTACATA
1 CATAACTTACATA
46488739 TATAATACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (27 bp):
CATAACTTACATAACTCACATAACTCA
Found at i:46494259 original size:21 final size:21
Alignment explanation
Indices: 46494233--46494272 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
46494223 AAATTGCTCA
46494233 ACTTAAAGTA-GAGGCAACATC
1 ACTTAAAG-AGGAGGCAACATC
46494254 ACTTAAAGAGGAGGCAACA
1 ACTTAAAGAGGAGGCAACA
46494273 ATGAAGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (21 bp):
ACTTAAAGAGGAGGCAACATC
Found at i:46494763 original size:43 final size:44
Alignment explanation
Indices: 46494692--46494889 Score: 149
Period size: 43 Copynumber: 4.6 Consensus size: 44
46494682 GCCACTAAAA
* * *
46494692 TAAAGATCAC-GTTCTTTAGCGACGTTTGCCCAAAAAGCATCGC
1 TAAAGGTCACAGTTCTTTAGCGGCGTTTGCCCAAAAAGCACCGC
* **
46494735 TAAATGTCA-AGTTCTTTAGCGGCGTTTGCCCAAAAAGTGCCGC
1 TAAAGGTCACAGTTCTTTAGCGGCGTTTGCCCAAAAAGCACCGC
** * * *
46494778 TAAAGGTCACA-TTCTTTAGCGGTATTTTTCCC-AAATGCGCCGC
1 TAAAGGTCACAGTTCTTTAGCGG-CGTTTGCCCAAAAAGCACCGC
** * ** **
46494821 TAAAAATCAC-GTTCTTTAGTGGCGTTT-TTCTGAAAGCACCGC
1 TAAAGGTCACAGTTCTTTAGCGGCGTTTGCCCAAAAAGCACCGC
* * *
46494863 TAAAAGTCA-TGTTCTTTAGCGACGTTT
1 TAAAGGTCACAGTTCTTTAGCGGCGTTT
46494890 TTCTTACATA
Statistics
Matches: 124, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 34 0.27
43 82 0.66
44 7 0.06
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
TAAAGGTCACAGTTCTTTAGCGGCGTTTGCCCAAAAAGCACCGC
Found at i:46495387 original size:30 final size:30
Alignment explanation
Indices: 46495352--46495412 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
46495342 AGACATACAA
46495352 AAAACAAACAAACAATTTGTTAATTTTTTC
1 AAAACAAACAAACAATTTGTTAATTTTTTC
46495382 AAAACAAACAAACAATTTGTTAATTTTTTC
1 AAAACAAACAAACAATTTGTTAATTTTTTC
46495412 A
1 A
46495413 TTGCTTCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAACAAACAAACAATTTGTTAATTTTTTC
Found at i:46498464 original size:24 final size:25
Alignment explanation
Indices: 46498437--46498488 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
46498427 ACCTAGCCTC
46498437 TTTTAAT-AACTGGAGAAAAGCCCT
1 TTTTAATAAACTGGAGAAAAGCCCT
* * *
46498461 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGAGAAAAGCCCT
46498486 TTT
1 TTT
46498489 CGGTAAATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGAGAAAAGCCCT
Found at i:46498495 original size:25 final size:25
Alignment explanation
Indices: 46498444--46498513 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
46498434 CTCTTTTAAT
* * *
46498444 AACTGGAGAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
46498469 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
46498494 AATTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
46498514 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:46498935 original size:27 final size:27
Alignment explanation
Indices: 46498724--46498928 Score: 275
Period size: 27 Copynumber: 7.6 Consensus size: 27
46498714 ATGGTAGTTT
* * * *
46498724 TACCCCACAAGGGTATCTCGATAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
46498751 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
46498778 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
46498805 TACCCTACAGGGGTTTTTCGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
** **
46498832 TACCCTACAAAGGTATTTCGGTGGTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
46498859 TACCCTATAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
**
46498886 TACCCTACAGGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
46498913 TACCCTACAAGGGTAT
1 TACCCTACAGGGGTAT
46498929 ATTAGTATTT
Statistics
Matches: 156, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:46499064 original size:81 final size:81
Alignment explanation
Indices: 46498976--46499169 Score: 280
Period size: 81 Copynumber: 2.4 Consensus size: 81
46498966 CACAAATTAG
* * *
46498976 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGAAATTTTATAAGCTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGAAATTTTACAAACTAGGGGTATTTTGG
46499041 TAATTTTATAAACCAA
66 TAATTTTATAAACCAA
* * * *
46499057 GGGTATTTTAGTAAATTTACAAACCAAGGGTATTTTGGTAATTTTGCAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGAAATTTTACAAACTAGGGGTATTTTGG
*
46499122 TAATTTTGTAAACCAA
66 TAATTTTATAAACCAA
* * * *
46499138 GGGTATTTCGGTAATTCTATAAATCAAGGGTA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTA
46499170 AAATGGTAAT
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.38
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGAAATTTTACAAACTAGGGGTATTTTGG
TAATTTTATAAACCAA
Found at i:46499160 original size:27 final size:27
Alignment explanation
Indices: 46498976--46499196 Score: 244
Period size: 27 Copynumber: 8.2 Consensus size: 27
46498966 CACAAATTAG
* *
46498976 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
46499003 GGGTATTTTGGAAATTTTATAAGCTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
46499030 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
46499057 GGGTATTTTAGTAAATTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
** * *
46499084 GGGTATTTTGGTAATTTTGCAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
46499111 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
46499138 GGGTATTTCGGTAATTCTATAAATCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*** * *
46499165 GGGTAAAATGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
46499192 GGGTA
1 GGGTA
46499197 AAACAGTAAT
Statistics
Matches: 165, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:46499169 original size:54 final size:54
Alignment explanation
Indices: 46498976--46499358 Score: 219
Period size: 54 Copynumber: 7.1 Consensus size: 54
46498966 CACAAATTAG
* * * * * * * * *
46498976 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGAAATTTTATAAGCTAG
1 GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
* * * * * *
46499030 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAAATTTACAAACCAA
1 GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
* * ** * *
46499084 GGGTATTTTGGTAATTTTGCAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGGTAATTCTATAAATC-AAGGGTATTTTGGTAATTTTATAAACCAA
*** * *
46499138 GGGTATTTCGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGTAAATCAA
1 GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
*** * * * *** * *
46499192 GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAA
1 GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
*** * * **** * * *
46499246 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTATAAATCGA
1 GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
*** * * *** * *
46499300 GGGTAAAACGGTAATTCTATAAATCGAGCGTAAAATGGTAATTTTATAAATCGA
1 GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
46499354 GGGTA
1 GGGTA
46499359 AAATGGTAAT
Statistics
Matches: 285, Mismatches: 42, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.00
54 283 0.99
55 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTATAAATCAAGGGTATTTTGGTAATTTTATAAACCAA
Found at i:46499432 original size:81 final size:81
Alignment explanation
Indices: 46499120--46499450 Score: 455
Period size: 81 Copynumber: 4.1 Consensus size: 81
46499110 GGGGTATTTT
* * ***
46499120 GGTAATTTTGTAAACCAAGGGTATTTCGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGT
46499185 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* * * * *
46499201 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGT
*
46499266 AAATCGAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* * * * *
46499282 GATAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGCGTAAAATGGTAATTTTAT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGT
* *
46499347 AAATCGAGGGTAAAAT
66 AAATCAAGGGTAAAAC
* * *
46499363 GGTAATTTTGTAAATCGAGGGTTAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGT
*
46499428 AAATCAAGGGTTAAAC
66 AAATCAAGGGTAAAAC
*
46499444 GATAATT
1 GGTAATT
46499451 CTATAAATTG
Statistics
Matches: 218, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 218 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTGT
AAATCAAGGGTAAAAC
Found at i:46499465 original size:27 final size:27
Alignment explanation
Indices: 46499146--46499458 Score: 392
Period size: 27 Copynumber: 11.6 Consensus size: 27
46499136 AAGGGTATTT
*
46499146 CGGTAATTCTATAAATCAAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * * *
46499173 TGGTAATTTTGTAAATCAAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* *
46499200 CAGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* *
46499227 TGGTAATTCTATAAATCAAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
46499254 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* *
46499281 CGATAATTTTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
46499308 CGGTAATTCTATAAATCGAGCGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* *
46499335 TGGTAATTTTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * * *
46499362 TGGTAATTTTGTAAATCGAGGGTTAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
46499389 CGATAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * * * *
46499416 TGGTAATTTTGTAAATCAAGGGTTAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
46499443 CGATAATTCTATAAAT
1 CGGTAATTCTATAAAT
46499459 TGGGGGTACT
Statistics
Matches: 246, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 246 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
CGGTAATTCTATAAATCGAGGGTAAAA
Found at i:46499493 original size:27 final size:26
Alignment explanation
Indices: 46499463--46499614 Score: 99
Period size: 27 Copynumber: 5.7 Consensus size: 26
46499453 ATAAATTGGG
*
46499463 GGTACTTTGATAATTTTACAAGTCGAT
1 GGTA-TTTGATAATTTTACAAATCGAT
* * *
46499490 GGTATTTCAGTAATTTTA-TAATCGAC
1 GGTATTTGA-TAATTTTACAAATCGAT
* * * **
46499516 GGTATTTCGGTAATTTTATAAACCGGG
1 GGTATTT-GATAATTTTACAAATCGAT
* * * *
46499543 GGTACTTTGGTAATTTTACAAGTCAAA
1 GGTA-TTTGATAATTTTACAAATCGAT
* *
46499570 GATATTTTAGTAATTTTACAAATCGAT
1 GGTATTTGA-TAATTTTACAAATCGAT
*
46499597 GGTATTTCGGTAATTTTA
1 GGTATTT-GATAATTTTA
46499615 GTAAACTAAA
Statistics
Matches: 94, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
26 27 0.29
27 64 0.68
28 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.41
Consensus pattern (26 bp):
GGTATTTGATAATTTTACAAATCGAT
Found at i:46499544 original size:80 final size:81
Alignment explanation
Indices: 46499446--46499620 Score: 244
Period size: 80 Copynumber: 2.2 Consensus size: 81
46499436 GGTTAAACGA
* ** * * * *
46499446 TAATTCTATAAATTGGGGGTACTTTGATAATTTTACAAGTCGATGGTATTTCAGTAATTTTA-TA
1 TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGATATTTCAGTAATTTTACAA
46499510 ATCGACGGTATTTCGG
66 ATCGACGGTATTTCGG
* *
46499526 TAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCAAAGATATTTTAGTAATTTTACAA
1 TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGATATTTCAGTAATTTTACAA
*
46499591 ATCGATGGTATTTCGG
66 ATCGACGGTATTTCGG
46499607 TAATTTTAGTAAAC
1 TAATTTTA-TAAAC
46499621 TAAAGTATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 54 0.65
81 24 0.29
82 5 0.06
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (81 bp):
TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGATATTTCAGTAATTTTACAA
ATCGACGGTATTTCGG
Found at i:46502032 original size:24 final size:25
Alignment explanation
Indices: 46502005--46502072 Score: 104
Period size: 24 Copynumber: 2.8 Consensus size: 25
46501995 CTCTTTTAAT
*
46502005 AACTGGGGCAAAGCCCTTTT-GGTA
1 AACTCGGGCAAAGCCCTTTTCGGTA
46502029 AACTCGGGCAAAG-CCTTTTCGGTA
1 AACTCGGGCAAAGCCCTTTTCGGTA
*
46502053 AACTCGGGCATAGCCCTTTT
1 AACTCGGGCAAAGCCCTTTT
46502073 AGTACTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
23 6 0.15
24 28 0.70
25 6 0.15
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTCGGGCAAAGCCCTTTTCGGTA
Found at i:46502321 original size:27 final size:26
Alignment explanation
Indices: 46502275--46502459 Score: 165
Period size: 27 Copynumber: 6.9 Consensus size: 26
46502265 GACAAAATGG
* * *
46502275 TAATTTTACCCCACAAGGGTATCTTGA
1 TAATTCTACCCTACAGGGGTAT-TTGA
* *
46502302 TAATTCTACCCTATAGGGGTATTTCA
1 TAATTCTACCCTACAGGGGTATTTGA
* * *
46502328 GTAATTCTACCCTATAAGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTT-GA
** *
46502356 TAATTCTACAATACAGGGGTATTTCA
1 TAATTCTACCCTACAGGGGTATTTGA
*
46502382 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTT-GA
*
46502410 TAATTCTA-CCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTA-TTTGA
* * *
46502436 TAGTTCTATCCTACAAGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
46502460 CAGTATTTTA
Statistics
Matches: 132, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
26 27 0.20
27 105 0.80
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (26 bp):
TAATTCTACCCTACAGGGGTATTTGA
Found at i:46502332 original size:54 final size:54
Alignment explanation
Indices: 46502274--46502460 Score: 243
Period size: 54 Copynumber: 3.5 Consensus size: 54
46502264 GGACAAAATG
* * * *
46502274 GTAATTTTACCCCACAAGGGTATCTT-GATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCA
* **
46502328 GTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACAATACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* **
46502382 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* *
46502435 GTAGTTCTATCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTC
46502461 AGTATTTTAC
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
53 38 0.33
54 78 0.67
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:46502413 original size:81 final size:80
Alignment explanation
Indices: 46502287--46502464 Score: 234
Period size: 81 Copynumber: 2.2 Consensus size: 80
46502277 ATTTTACCCC
* * *
46502287 ACAAGGGTATCTTGA-TAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTATAAGGGTAT
1 ACAAGGGTAT-TTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTA-CCTACAAGGGTAT
46502351 TTCGGTAATTCTA-CAAT
64 TTCGGTAATTCTATC-AT
* * *
46502368 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTACAGGGGTATTT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTACAAGGGTATTT
* * *
46502433 TGGTAGTTCTATCCT
66 CGGTAATTCTATCAT
46502448 ACAAGGGTATTTCAGTA
1 ACAAGGGTATTTCAGTA
46502465 TTTTACGAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 42 0.49
81 43 0.51
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (80 bp):
ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTACAAGGGTATTT
CGGTAATTCTATCAT
Found at i:46502595 original size:81 final size:81
Alignment explanation
Indices: 46502488--46502656 Score: 275
Period size: 81 Copynumber: 2.1 Consensus size: 81
46502478 GGGTTTTCGA
* * * * *
46502488 TAATTTAACAAATCAAGGGTATTTTGGTAATTTTACAAACCATGGGTATTTTTGTAAATTTATAA
1 TAATTTTACAAACCAAGGGTAATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAAATTTATAA
46502553 ACCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
* *
46502569 TAATTTTACAAACCAAGGGTAATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAA
1 TAATTTTACAAACCAAGGGTAATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAAATTTATAA
46502634 ACCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
46502650 TAATTTT
1 TAATTTT
46502657 GTGAATCGAG
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (81 bp):
TAATTTTACAAACCAAGGGTAATTTGGTAATTTTACAAACCAGGGGTATTTTGGTAAATTTATAA
ACCAAGGGTATTTTAG
Found at i:46502658 original size:27 final size:27
Alignment explanation
Indices: 46502449--46502656 Score: 231
Period size: 27 Copynumber: 7.8 Consensus size: 27
46502439 TTCTATCCTA
** * *
46502449 CAAGGGTATTTCAGT-ATTTTACGAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * * *
46502475 CGAGGGT-TTTCGATAATTTAACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
46502501 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
46502528 CATGGGTATTTTTGTAAATTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
46502555 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
46502582 CAAGGGTAATTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
46502609 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
46502636 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
46502657 GTGAATCGAG
Statistics
Matches: 154, Mismatches: 26, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
25 5 0.03
26 21 0.14
27 128 0.83
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:46502680 original size:27 final size:27
Alignment explanation
Indices: 46502649--46502963 Score: 393
Period size: 27 Copynumber: 11.7 Consensus size: 27
46502639 GGGTATTTTA
* * *
46502649 GTAATTTTGTGAATCGAGGGAAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* ** *
46502676 ATAATTTTATAAATTAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
46502703 GTAATTTTGTAAATCGAGCGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
46502730 GTAATTTTGTAAATCGATGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
46502757 GTAATTCTAT-AATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAATG
*
46502783 GTAATTTTATAAATCGAGCGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
46502810 GTAATTTTTTAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAATG
*
46502837 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* * *
46502864 GTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAAAATG
46502891 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATG
* *
46502918 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAATG
46502945 GTAATTCTT-TAAATC-AGGG
1 GTAATT-TTATAAATCGAGGG
46502964 CTACTTTGAT
Statistics
Matches: 251, Mismatches: 35, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 27 0.11
27 222 0.88
28 2 0.01
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAAAATG
Found at i:46502681 original size:81 final size:81
Alignment explanation
Indices: 46502515--46502684 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
46502505 GGTATTTTGG
* *
46502515 TAATTTTACAAACCATGGGTATTTTTGTAAATTTATAAACCAAGGGTATTTTAGTAATTTTACAA
1 TAATTTTACAAACCAGGGGTATTTTGGTAAATTTATAAACCAAGGGTATTTTAGTAATTTTACAA
* ** *
46502580 ACCAAGGGTAATTTGG
66 ACCAAGGGAAAAATGA
* * ***
46502596 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTGA
1 TAATTTTACAAACCAGGGGTATTTTGGTAAATTTATAAACCAAGGGTATTTTAGTAATTTTACAA
* *
46502661 ATCGAGGGAAAAATGA
66 ACCAAGGGAAAAATGA
46502677 TAATTTTA
1 TAATTTTA
46502685 TAAATTAAGG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (81 bp):
TAATTTTACAAACCAGGGGTATTTTGGTAAATTTATAAACCAAGGGTATTTTAGTAATTTTACAA
ACCAAGGGAAAAATGA
Found at i:46503008 original size:27 final size:27
Alignment explanation
Indices: 46502977--46503114 Score: 145
Period size: 27 Copynumber: 5.1 Consensus size: 27
46502967 CTTTGATAAA
* *
46502977 TTTACAAGTCGAGGGTATTTCAGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
** *
46503004 TTTAC-AATCGATAGTATTTTGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
* * * *
46503030 ATTATAAACCGGGGGTACTTT-GGTAAT
1 TTTACAAATCGAGGGTA-TTTCGGTAAT
* * *
46503057 TTTACAAGTCGAAGGTATTTCAGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
46503084 TTTACAAATCGAGGGTATTTCGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAAT
46503111 TTTA
1 TTTA
46503115 GTAAACTAAA
Statistics
Matches: 87, Mismatches: 21, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
26 22 0.25
27 62 0.71
28 3 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
TTTACAAATCGAGGGTATTTCGGTAAT
Found at i:46503050 original size:80 final size:82
Alignment explanation
Indices: 46502965--46503120 Score: 235
Period size: 80 Copynumber: 1.9 Consensus size: 82
46502955 AAATCAGGGC
* * *
46502965 TACTTTGATAAATTTACAAGTCGAGGGTATTTCAGTAATTTTAC-AATCGATAGTATTTTGGTAA
1 TACTTTGATAAATTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGAGTATTTCGGTAA
46503029 TATTA-TAAACCGGGGG
66 TATTAGTAAACCGGGGG
* * *
46503045 TACTTTGGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAA
1 TACTTTGATAAATTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGAGTATTTCGGTAA
*
46503110 TTTTAGTAAAC
66 TATTAGTAAAC
46503121 TAAAGTATTG
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 41 0.61
81 21 0.31
82 5 0.07
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (82 bp):
TACTTTGATAAATTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGAGTATTTCGGTAA
TATTAGTAAACCGGGGG
Found at i:46503100 original size:54 final size:53
Alignment explanation
Indices: 46502977--46503114 Score: 163
Period size: 54 Copynumber: 2.6 Consensus size: 53
46502967 CTTTGATAAA
* * **
46502977 TTTACAAGTCGAGGGTATTTCAGTAATTTTACAATCGATAGTATTTTGGTAAT
1 TTTACAAATCGAGGGTATTTCGGTAATTTTACAATCGATAGTATTTCAGTAAT
* * * *
46503030 ATTATAAACCGGGGGTACTTT-GGTAATTTTACAAGTCGA-AGGTATTTCAGTAAT
1 TTTACAAATCGAGGGTA-TTTCGGTAATTTTACAA-TCGATA-GTATTTCAGTAAT
46503084 TTTACAAATCGAGGGTATTTCGGTAATTTTA
1 TTTACAAATCGAGGGTATTTCGGTAATTTTA
46503115 GTAAACTAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
53 28 0.41
54 41 0.59
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
TTTACAAATCGAGGGTATTTCGGTAATTTTACAATCGATAGTATTTCAGTAAT
Done.