Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 149 of 290
Found at i:47633417 original size:20 final size:20
Alignment explanation
Indices: 47633339--47633417 Score: 61
Period size: 20 Copynumber: 4.0 Consensus size: 20
47633329 AATGTCTTTA
**
47633339 TTTGCACTTCAGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTG
* * * * *
47633359 TATACACTTTGATGTCTCTA
1 TTTGCACTTTGGTGCCTCTG
* *
47633379 CTTGCACATTT-GTGACTCTG
1 TTTGCAC-TTTGGTGCCTCTG
47633399 TTTGCACTTTGGTGCCTCT
1 TTTGCACTTTGGTGCCTCT
47633418 ATTATACATC
Statistics
Matches: 42, Mismatches: 15, Indels: 4
0.69 0.25 0.07
Matches are distributed among these distances:
19 3 0.07
20 36 0.86
21 3 0.07
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTG
Found at i:47647359 original size:26 final size:26
Alignment explanation
Indices: 47647309--47647359 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
47647299 TAAATTAAAC
* * *
47647309 TTTTCAAAAATACTTTTCCATAGCAA
1 TTTTCAAAAACACTTTTCAAAAGCAA
*
47647335 TTTTCAAAAACACTTTTTAAAAGCA
1 TTTTCAAAAACACTTTTCAAAAGCA
47647360 TTGCCAAACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (26 bp):
TTTTCAAAAACACTTTTCAAAAGCAA
Found at i:47648193 original size:13 final size:13
Alignment explanation
Indices: 47648150--47648193 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
47648140 AGTATATATT
*
47648150 AACCCAAGTACCC
1 AACCCAATTACCC
47648163 AACCC-A--ACCC
1 AACCCAATTACCC
47648173 AACCCAATTACCC
1 AACCCAATTACCC
47648186 AACCCAAT
1 AACCCAAT
47648194 CATAAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 9 0.32
11 1 0.04
12 1 0.04
13 17 0.61
ACGTcount: A:0.41, C:0.48, G:0.02, T:0.09
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:47648265 original size:7 final size:6
Alignment explanation
Indices: 47648218--47648264 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
47648208 ATAATTTAAT
* *
47648218 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
47648265 ACATATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 32 0.86
8 5 0.14
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:47648314 original size:9 final size:9
Alignment explanation
Indices: 47648284--47648342 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
47648274 TTTATACAAA
47648284 TAATTCGGT
1 TAATTCGGT
* *
47648293 TAATTTGGG
1 TAATTCGGT
*
47648302 TAATTCAGT
1 TAATTCGGT
*
47648311 TAATTCGAT
1 TAATTCGGT
47648320 TAATTCGGT
1 TAATTCGGT
47648329 TAATTCGGT
1 TAATTCGGT
47648338 TAATT
1 TAATT
47648343 TTATAATTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:47652725 original size:16 final size:17
Alignment explanation
Indices: 47652695--47652727 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
47652685 AAATTATCTA
47652695 TTTACTTTAAGTATTTT
1 TTTACTTTAAGTATTTT
*
47652712 TTTA-TTTAATTATTTT
1 TTTACTTTAAGTATTTT
47652728 ATAACATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTACTTTAAGTATTTT
Found at i:47652970 original size:9 final size:9
Alignment explanation
Indices: 47652956--47653011 Score: 52
Period size: 9 Copynumber: 6.9 Consensus size: 9
47652946 GTGAAAAAAT
47652956 TTAAATTAA
1 TTAAATTAA
47652965 TTAAATTAA
1 TTAAATTAA
* *
47652974 -TAAGTGAA
1 TTAAATTAA
47652982 --AAA--AA
1 TTAAATTAA
47652987 TTAAATTAA
1 TTAAATTAA
47652996 TTAAATTAA
1 TTAAATTAA
47653005 -TAAATTA
1 TTAAATTA
47653012 TATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
5 2 0.05
7 5 0.12
8 13 0.32
9 20 0.50
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (9 bp):
TTAAATTAA
Found at i:47652980 original size:31 final size:31
Alignment explanation
Indices: 47652940--47653007 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
47652930 AATTCGATCG
*
47652940 AATAGAGTGAAAAAATTTAAATTAATTAAATT
1 AATA-AGTGAAAAAAATTAAATTAATTAAATT
47652972 AATAAGTGAAAAAAATTAAATTAATTAAATT
1 AATAAGTGAAAAAAATTAAATTAATTAAATT
47653003 AATAA
1 AATAA
47653008 ATTATATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.32
Consensus pattern (31 bp):
AATAAGTGAAAAAAATTAAATTAATTAAATT
Found at i:47654114 original size:43 final size:43
Alignment explanation
Indices: 47654059--47654165 Score: 187
Period size: 43 Copynumber: 2.5 Consensus size: 43
47654049 AAAAATGCCA
* * *
47654059 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCG
1 CTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGAAAAAGCACCG
47654102 CTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGAAAAAGCACCG
1 CTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGAAAAAGCACCG
47654145 CTAAAGGTCAAGGCTTTTAGC
1 CTAAAGGTCAAGGCTTTTAGC
47654166 AGAGCTTTTT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
CTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGAAAAAGCACCG
Found at i:47654189 original size:43 final size:41
Alignment explanation
Indices: 47654059--47654192 Score: 144
Period size: 43 Copynumber: 3.1 Consensus size: 41
47654049 AAAAATGCCA
*
47654059 CTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCG
1 CTAAAGGTCAAGGCTTTTAGCGGC-TTT-TTGGAAAAGCGCCG
* * *
47654102 CTAAAGGTCAAGGCTTTTAGCGGCGCTTGTGGAAAAAGCACCG
1 CTAAAGGTCAAGGCTTTTAGCGGC-TTTTTGG-AAAAGCGCCG
**
47654145 CTAAAGGTCAAGGCTTTTAGCAGAGCTTTTTTTACAAA-CGCCG
1 CTAAAGGTCAAGGCTTTTAGC-G-GCTTTTTGGA-AAAGCGCCG
47654188 CTAAA
1 CTAAA
47654193 TTTGGCAGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
42 2 0.03
43 67 0.86
44 7 0.09
45 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (41 bp):
CTAAAGGTCAAGGCTTTTAGCGGCTTTTTGGAAAAGCGCCG
Found at i:47654279 original size:31 final size:31
Alignment explanation
Indices: 47654244--47654326 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
47654234 CTTCCTGCAT
* *
47654244 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
47654275 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
47654306 TAAAAAATACAACCAAAAACA
1 T--AAAATCCAACCAAAAACA
47654327 TTAATTAATG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.61, C:0.19, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:47657956 original size:28 final size:28
Alignment explanation
Indices: 47657924--47657993 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
47657914 ATAGTAAGTC
47657924 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
47657952 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
47657980 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47657994 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:47664284 original size:40 final size:40
Alignment explanation
Indices: 47664179--47664284 Score: 101
Period size: 40 Copynumber: 2.6 Consensus size: 40
47664169 GCTACTCGTT
* * * *
47664179 CAAATTCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
47664219 CAAATGCCTAT--GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCT-TCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
47664260 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47664285 CATCATTCGA
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
39 4 0.08
40 37 0.70
41 12 0.23
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:47672306 original size:40 final size:40
Alignment explanation
Indices: 47672201--47672306 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
47672191 GCTACTCGTT
* * * *
47672201 CAAATTCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
47672241 CAAATGCCTAC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
47672282 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47672307 CATCATTCGA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
39 3 0.06
40 39 0.74
41 11 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:47676334 original size:28 final size:28
Alignment explanation
Indices: 47676302--47676371 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
47676292 ATAGTAAGTC
47676302 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
47676330 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
47676358 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47676372 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:47681600 original size:9 final size:9
Alignment explanation
Indices: 47681586--47681749 Score: 89
Period size: 9 Copynumber: 17.6 Consensus size: 9
47681576 TATTTAAGTA
47681586 TTATGTAAG
1 TTATGTAAG
*
47681595 TTATGTAAT
1 TTATGTAAG
*
47681604 TTATGATATG
1 TTATG-TAAG
* * *
47681614 ATATAT-AT
1 TTATGTAAG
*
47681622 TTATGTAAA
1 TTATGTAAG
* *
47681631 TTATAT-AT
1 TTATGTAAG
*
47681639 TTATCTAAG
1 TTATGTAAG
*
47681648 TTATATAAG
1 TTATGTAAG
47681657 TTATGTAAG
1 TTATGTAAG
*
47681666 TTATGTAAA
1 TTATGTAAG
*
47681675 TTATGATATAAAA
1 TTATG---T-AAG
*
47681688 TATATTTAAG
1 T-TATGTAAG
47681698 TATTATGTAAG
1 --TTATGTAAG
47681709 TTATGTAAG
1 TTATGTAAG
* *
47681718 TTATATATG
1 TTATGTAAG
*
47681727 TTATATAAG
1 TTATGTAAG
*
47681736 TTATGTAAA
1 TTATGTAAG
47681745 TTATG
1 TTATG
47681750 ATATCAAATA
Statistics
Matches: 120, Mismatches: 25, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
8 10 0.08
9 86 0.72
10 7 0.06
11 8 0.07
12 2 0.02
13 4 0.03
14 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:47681744 original size:70 final size:70
Alignment explanation
Indices: 47681586--47681780 Score: 275
Period size: 70 Copynumber: 2.8 Consensus size: 70
47681576 TATTTAAGTA
* * * * *
47681586 TTATGTAAGTTATGTAATTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTT
1 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTATGT--ATTATGTAAGTTATCTAAGTT
47681650 ATATAAG
64 ATATAAG
* *
47681657 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT
1 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTATGTATTATGTAAGTTATCTAAGTTAT
*
47681722 ATATG
66 ATAAG
* *
47681727 TTATATAAGTTATGTAAATTATGATATCAAATATATTTATGTATTATGTAAGTT
1 TTATGTAAGTTATGTAAATTATGATATAAAATATATTTATGTATTATGTAAGTT
47681781 TTTTATTTCA
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
69 6 0.05
70 68 0.61
71 38 0.34
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (70 bp):
TTATGTAAGTTATGTAAATTATGATATAAAATATATTTATGTATTATGTAAGTTATCTAAGTTAT
ATAAG
Found at i:47681874 original size:15 final size:15
Alignment explanation
Indices: 47681854--47681909 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
47681844 AAGTAGCGGG
47681854 ATTAAATAATATTTA
1 ATTAAATAATATTTA
47681869 ATTAAATAATATTT-
1 ATTAAATAATATTTA
47681883 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
47681898 ATTAAATAATAT
1 ATTAAATAATAT
47681910 ACATGTCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.44
16 6 0.17
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:47682118 original size:24 final size:24
Alignment explanation
Indices: 47682086--47682153 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
47682076 ACTTAAATGG
47682086 TAAAACGGACGATAATATTTGTGA
1 TAAAACGGACGATAATATTTGTGA
47682110 TAAAACGGA-GAATAATATTTGTGA
1 TAAAACGGACG-ATAATATTTGTGA
*
47682134 TAAAACGGACGAGAATATTT
1 TAAAACGGACGATAATATTT
47682154 CAATAATAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAAACGGACGATAATATTTGTGA
Found at i:47683115 original size:369 final size:368
Alignment explanation
Indices: 47682245--47683146 Score: 1736
Period size: 369 Copynumber: 2.4 Consensus size: 368
47682235 GAAACATACA
47682245 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
47682310 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
47682375 AGGTTGGAGAGAAGGTCAGTATTGTTGTAATTTTGATAAAAATAGTTATAACTTTTAAAGAAATT
131 AGGTTGGAGAGAAGGTCAGTATTGTTGTAATTTTGATAAAAATAGTTATAACTTTTAAAGAAATT
47682440 TAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAAA
196 TAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAAA
47682505 TCAAAAAAAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATT
261 TCAAAAAAAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATT
47682570 CAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
326 CAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
47682613 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
47682678 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
47682743 AGGTT-GAGAGAAGGTCAGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAAT
131 AGGTTGGAGAGAAGGTCAGTATTGTTGTAATTTTGATAAAAA-TAGTTATAACTTTTAAAGAAAT
*
47682807 TTAAAAATATTAAATGTTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAA
195 TTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAA
47682872 TATCAAAAAAGAATCGTAGTTTAATTTTTAT-AGTAAATTGGAAATAAATTAAGGTTATATAAAT
260 -ATCAAAAAA-AATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAAT
47682936 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
323 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
47682982 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
47683047 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
*
47683112 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AGGTTGGAGAGAAGGTCAG-TATTGTTGTAATTTT
47683147 AATGGACAAG
Statistics
Matches: 527, Mismatches: 2, Indels: 7
0.98 0.00 0.01
Matches are distributed among these distances:
367 36 0.07
368 221 0.42
369 223 0.42
370 32 0.06
371 15 0.03
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (368 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGTATTGTTGTAATTTTGATAAAAATAGTTATAACTTTTAAAGAAATT
TAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATAAA
TCAAAAAAAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATT
CAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:47687388 original size:15 final size:15
Alignment explanation
Indices: 47687368--47687399 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47687358 AAATAATAAT
*
47687368 TTATATATATTTATC
1 TTATATACATTTATC
47687383 TTATATACATTTATC
1 TTATATACATTTATC
47687398 TT
1 TT
47687400 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:47687843 original size:16 final size:18
Alignment explanation
Indices: 47687819--47687868 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
47687809 TTACACCCTA
47687819 AATATATATTATAATCTT
1 AATATATATTATAATCTT
* *
47687837 AATATATATTAGAATTTT
1 AATATATATTATAATCTT
47687855 AATATATATATATA
1 AATATATAT-TATA
47687869 TATATAACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 25 0.89
19 3 0.11
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
AATATATATTATAATCTT
Found at i:47688226 original size:41 final size:41
Alignment explanation
Indices: 47688181--47688411 Score: 374
Period size: 41 Copynumber: 5.6 Consensus size: 41
47688171 TTACTTGTTT
* *
47688181 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
* *
47688222 GCGGCGTTTTTCCATAAGCGCCGCTAAAACATC-AGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGA-CCTATA
* *
47688263 GCGGTGTTTTTCCAAAAGCGCCGCTAAAACCTTGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
47688304 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
* *
47688345 GCAGCGTTTTTCCAGAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
47688386 GCGGCGTTTTTCCAAAAGCGCCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
47688412 TTGTACAGTT
Statistics
Matches: 176, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
41 175 0.99
42 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
Found at i:47688442 original size:41 final size:41
Alignment explanation
Indices: 47688397--47688506 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 41
47688387 CGGCGTTTTT
* *
47688397 CCAAAAGCGCCGCTATTG-TACAGTTTTTAGCGGCATTTGGG
1 CCAAAAACGCCGCTATTGCT-CAGTTTTTAGCGGCATTTGGA
* * *
47688438 CCAAAAACACCACTATTGCTCAGTTTTTAGCGGCGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCATTTGGA
* * *
47688479 TCAAAAACGCTGCTATTGCTCTGTTTTT
1 CCAAAAACGCCGCTATTGCTCAGTTTTT
47688507 TACGGCGTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 57 0.98
42 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (41 bp):
CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCATTTGGA
Found at i:47693773 original size:13 final size:13
Alignment explanation
Indices: 47693755--47693779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47693745 TTGTGAATTT
47693755 TGTATCTGTTTTC
1 TGTATCTGTTTTC
47693768 TGTATCTGTTTT
1 TGTATCTGTTTT
47693780 GGGGTGGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.16, T:0.64
Consensus pattern (13 bp):
TGTATCTGTTTTC
Found at i:47698222 original size:53 final size:53
Alignment explanation
Indices: 47698159--47698263 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
47698149 TTCCTTTTTA
* * * *
47698159 AACTTACCATTTCCATGTCTTAACATAGTCTTACATGGTATCTTTGCCTTATG
1 AACTCACCATTGCCATGCCTTAACATAGTCTTACATGGGATCTTTGCCTTATG
** *
47698212 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGCCTTAACATAGTCTTACATGGGATCTTTGCCTTAT
47698264 AGTAGTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTAACATAGTCTTACATGGGATCTTTGCCTTATG
Found at i:47698302 original size:55 final size:53
Alignment explanation
Indices: 47698171--47698354 Score: 170
Period size: 55 Copynumber: 3.4 Consensus size: 53
47698161 CTTACCATTT
* * * *
47698171 CCATGTCTTAACATAGTCTTACATGGTATCTTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATGAACTCACCAATG
* * ** * *
47698224 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTAT-G-AACTCACCAATG
*** * * * *
47698279 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTAT-GAACTCACCAATG
* *
47698333 CCATGCCTTGGCATGGTCTTAC
1 CCATGTCTTGACATGGTCTTAC
47698355 TTGGTATCCT
Statistics
Matches: 106, Mismatches: 23, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
53 35 0.33
54 30 0.28
55 41 0.39
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATGAACTCACCAATG
Found at i:47698405 original size:36 final size:36
Alignment explanation
Indices: 47698358--47698429 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
47698348 GTCTTACTTG
*
47698358 GTATCCTTAAACCCTAATTTCATGACATTTGTATCC
1 GTATCCTTAAACCCTAATGTCATGACATTTGTATCC
47698394 GTATCCTTAAACCCTAATGTCATGACATTTGTATCC
1 GTATCCTTAAACCCTAATGTCATGACATTTGTATCC
47698430 TACACATTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (36 bp):
GTATCCTTAAACCCTAATGTCATGACATTTGTATCC
Found at i:47716573 original size:13 final size:13
Alignment explanation
Indices: 47716555--47716582 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
47716545 AATTTGTAAA
47716555 TTCTGTATCTATT
1 TTCTGTATCTATT
47716568 TTCTGTATCTATT
1 TTCTGTATCTATT
47716581 TT
1 TT
47716583 AGGGTGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (13 bp):
TTCTGTATCTATT
Found at i:47719854 original size:17 final size:18
Alignment explanation
Indices: 47719811--47719855 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
47719801 AATTGAATTA
47719811 AAAAAATTC-AAGTCTGC
1 AAAAAATTCTAAGTCTGC
*
47719828 AATAAA-TCTAAGTCTG-
1 AAAAAATTCTAAGTCTGC
47719844 AAAAAATTCTAA
1 AAAAAATTCTAA
47719856 TCCGACAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.27
Consensus pattern (18 bp):
AAAAAATTCTAAGTCTGC
Found at i:47721749 original size:39 final size:39
Alignment explanation
Indices: 47721671--47721750 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
47721661 TATTATAAAT
* **
47721671 TATAATGAGATCTAGCATTTGTTTCAGATCCTCAGGTAA
1 TATAATGAGATCCAGCATTTGTCGCAGATCCTCAGGTAA
* * * *
47721710 TATAATGAGATCCATCATTTGTCGCGGATTCTCATGTAA
1 TATAATGAGATCCAGCATTTGTCGCAGATCCTCAGGTAA
47721749 TA
1 TA
47721751 CATGATATAG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (39 bp):
TATAATGAGATCCAGCATTTGTCGCAGATCCTCAGGTAA
Found at i:47728093 original size:13 final size:13
Alignment explanation
Indices: 47728055--47728106 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
47728045 TTTGACAATT
47728055 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
47728068 C-TGTGAAAAAAGTG
1 CTTTTG--AAAAGTG
*
47728082 CTTTTGATAAGTG
1 CTTTTGAAAAGTG
47728095 CTTTTGAAAAGT
1 CTTTTGAAAAGT
47728107 TTGGTTGGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 3 0.09
13 18 0.56
14 8 0.25
15 3 0.09
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:47728821 original size:13 final size:13
Alignment explanation
Indices: 47728761--47728822 Score: 63
Period size: 13 Copynumber: 4.8 Consensus size: 13
47728751 ACACCTAAAA
47728761 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
47728774 TTCTCAAAAACAC
1 TTTTCAAAAGCAC
*
47728787 TTTTCCACAA-CAC
1 TTTT-CAAAAGCAC
*
47728800 TTTTTAAAAGCAC
1 TTTTCAAAAGCAC
*
47728813 ATTTCAAAAG
1 TTTTCAAAAG
47728823 TATTACCAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 3 0.08
13 32 0.82
14 4 0.10
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:47731210 original size:26 final size:21
Alignment explanation
Indices: 47731161--47731204 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
47731151 TGAATTTTTC
47731161 ATGGTTTTGTTAATAAAGTAA
1 ATGGTTTTGTTAATAAAGTAA
47731182 ATGGTTTTGTTAATAAAGTAA
1 ATGGTTTTGTTAATAAAGTAA
47731203 AT
1 AT
47731205 TTAATGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (21 bp):
ATGGTTTTGTTAATAAAGTAA
Found at i:47734805 original size:31 final size:30
Alignment explanation
Indices: 47734750--47734808 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
47734740 GTAAATACTC
***
47734750 AAAATTTGAAGGGTTAAAGTGTAAATATGA
1 AAAATTTGAAGGACCAAAGTGTAAATATGA
47734780 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAA-AGTGTAAATAT
47734809 TTTAGGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (30 bp):
AAAATTTGAAGGACCAAAGTGTAAATATGA
Found at i:47741278 original size:7 final size:7
Alignment explanation
Indices: 47741268--47741294 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
47741258 TTATTCATTA
47741268 TTAAATG
1 TTAAATG
47741275 TTAAATG
1 TTAAATG
47741282 TTAAATG
1 TTAAATG
47741289 TTAAAT
1 TTAAAT
47741295 TATGTGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (7 bp):
TTAAATG
Found at i:47741711 original size:25 final size:25
Alignment explanation
Indices: 47741683--47741780 Score: 93
Period size: 22 Copynumber: 4.2 Consensus size: 25
47741673 TAGCGCGCTA
* *
47741683 TCTGATTATTAGTACGTTAGTGCTC
1 TCTGATTATTAGCACATTAGTGCTC
47741708 TCTGATTATTAGCACATTAGTGCTC
1 TCTGATTATTAGCACATTAGTGCTC
*
47741733 TCCG--T-TTAGCACATCT-GTGCTC
1 TCTGATTATTAGCACAT-TAGTGCTC
* *
47741755 TCTG--TA-TAGCACTTTAATGCTC
1 TCTGATTATTAGCACATTAGTGCTC
47741777 TCTG
1 TCTG
47741781 TATAATAGTG
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
21 1 0.02
22 35 0.55
23 2 0.03
25 26 0.41
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.41
Consensus pattern (25 bp):
TCTGATTATTAGCACATTAGTGCTC
Found at i:47748286 original size:42 final size:43
Alignment explanation
Indices: 47748192--47748348 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
47748182 TGAGATATCG
* * * *
47748192 TGTAAGACCGTGTCCGAGACA-CAGGCCTCGAT-TTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATC-GGCATCGATATTGA-A-TTACA
* *
47748236 TGTAAGACCATGTCTGGGACATCGGCATC-ATATCTG-ATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGAATTACA
* * **
47748278 TGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATCGGCATCGATATTGAATTACA
* * *
47748321 TGTAAGACCACGTCCGGGACGTCGGCAT
1 TGTAAGACCATGTCTGGGACATCGGCAT
47748349 TGTATCTGTT
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 30 0.34
43 32 0.36
44 24 0.27
45 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGATATTGAATTACA
Found at i:47748340 original size:43 final size:43
Alignment explanation
Indices: 47748192--47748340 Score: 119
Period size: 42 Copynumber: 3.5 Consensus size: 43
47748182 TGAGATATCG
** * *
47748192 TGTAAGACCGTGTCCGAGACACAGGCCTCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCCGGGACACAGGCATCGATATTGA-A-TTACA
* * * *
47748236 TGTAAGACCATGTCTGGGACATC-GGCATC-ATATCTG-ATTTCG
1 TGTAAGACCACGTCCGGGACA-CAGGCATCGATAT-TGAATTACA
* * *
47748278 TGTAAGACC-CTATCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCAC-GTCCGGGACACAGGCATCGATATTGAATTACA
47748321 TGTAAGACCACGTCCGGGAC
1 TGTAAGACCACGTCCGGGAC
47748341 GTCGGCATTG
Statistics
Matches: 84, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
42 29 0.35
43 27 0.32
44 25 0.30
45 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (43 bp):
TGTAAGACCACGTCCGGGACACAGGCATCGATATTGAATTACA
Found at i:47748356 original size:85 final size:86
Alignment explanation
Indices: 47748189--47748348 Score: 216
Period size: 85 Copynumber: 1.9 Consensus size: 86
47748179 ATTTGAGATA
* * * * *
47748189 TCGTGTAAGACCGTGTCCGAGACACAGGCCTCGATTTGAGATTTACATGTAAGACCATGTCTGGG
1 TCGTGTAAGACCCTATCCGAGACACAGGCATCGATTTGAGATTTACATGTAAGACCACGTCCGGG
47748254 ACATCGGCATCATATCTGATT
66 ACATCGGCATCATATCTGATT
* * *
47748275 TCGTGTAAGACCCTATCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCCGG
1 TCGTGTAAGACCCTATCCGAGACACAGGCATCGAT-TTGAGATTTACATGTAAGACCACGTCCGG
*
47748338 GACGTCGGCAT
65 GACATCGGCAT
47748349 TGTATCTGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 30 0.47
86 30 0.47
87 4 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (86 bp):
TCGTGTAAGACCCTATCCGAGACACAGGCATCGATTTGAGATTTACATGTAAGACCACGTCCGGG
ACATCGGCATCATATCTGATT
Found at i:47751893 original size:20 final size:20
Alignment explanation
Indices: 47751850--47751895 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
47751840 ACTATTTTGT
47751850 TATGGG-CCAACTGTATTAA
1 TATGGGCCCAACTGTATTAA
* * *
47751869 AATGGGCCCAACTGTGTTGA
1 TATGGGCCCAACTGTATTAA
47751889 TATGGGC
1 TATGGGC
47751896 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (20 bp):
TATGGGCCCAACTGTATTAA
Found at i:47765029 original size:46 final size:46
Alignment explanation
Indices: 47764982--47765144 Score: 238
Period size: 46 Copynumber: 3.5 Consensus size: 46
47764972 TCTCGTAGCT
* * * * ** * *
47764982 GATGCATGTCCCAGACATGTCTCACACTGGCTT-ACGTTTTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAG-TTCTCGTCTCAATGCC
47765028 GATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGCC
47765074 GATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGCC
47765120 GATGCATGTCCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
47765145 GTTGGCTCTC
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
45 2 0.02
46 106 0.98
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATGCC
Found at i:47774514 original size:47 final size:47
Alignment explanation
Indices: 47774451--47774944 Score: 665
Period size: 47 Copynumber: 10.4 Consensus size: 47
47774441 CCCTTCGGGA
* * *
47774451 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47774498 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
47774545 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
47774592 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
** * * * *
47774639 CTTATCACGCATACACA-TGTTCACATTTATTACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
47774686 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
47774735 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
47774782 CTTATCACACATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
47774829 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
47774876 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
47774925 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
47774945 GTACATCAAT
Statistics
Matches: 405, Mismatches: 34, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
46 2 0.00
47 324 0.80
49 77 0.19
50 2 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:47774772 original size:190 final size:190
Alignment explanation
Indices: 47774472--47774944 Score: 781
Period size: 190 Copynumber: 2.5 Consensus size: 190
47774462 TATACACTTC
* *
47774472 CACATCCATCACATTGGCCATTCGGCCTTATCA--CATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTG
* *
47774535 GCCATTCAGCCTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
66 GCCATTCGGCCTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * *
47774600 ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATACACATGTT
131 ACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
* * *
47774660 CACATTTATTACATTGGCCATTCGACCTTATCACGCATATATATACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTG
*
47774725 GCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
66 GCCATTCGGCCTTATCTCATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCA
47774789 CACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
130 CACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
47774850 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTG
* * * *
47774915 GCCACTCGGCCCTATCACATATATATACTT
66 GCCATTCGGCCTTATCTCATATATACACTT
47774945 GTACATCAAT
Statistics
Matches: 262, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
188 29 0.11
189 1 0.00
190 231 0.88
191 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.34
Consensus pattern (190 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTG
GCCATTCGGCCTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
Found at i:47778457 original size:40 final size:40
Alignment explanation
Indices: 47778425--47778732 Score: 447
Period size: 40 Copynumber: 7.7 Consensus size: 40
47778415 CCAGCATGAT
* * * *
47778425 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
47778465 TGCTCTTCGGGGTTTAGCACAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
47778505 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
47778545 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
47778585 TGCACTTCGGGACTTAGCCCGGATACATCCCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
47778625 TGCTCTTCGGAACTTAGCACGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
47778665 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
47778705 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
47778733 GTCGAGACCT
Statistics
Matches: 242, Mismatches: 26, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
39 4 0.02
40 238 0.98
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:47778855 original size:38 final size:38
Alignment explanation
Indices: 47778786--47778860 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
47778776 GAATTTTAAT
*
47778786 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
47778824 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
47778861 AACTTGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:47781350 original size:47 final size:47
Alignment explanation
Indices: 47781287--47781822 Score: 758
Period size: 47 Copynumber: 11.3 Consensus size: 47
47781277 CCCTTCGGGA
* * *
47781287 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
47781334 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
47781381 CTTATCTCATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
47781428 CTTATCTCATATATGCATGTTCACATTCATCACATTGACCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
47781475 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
** * *
47781522 CTTATCACGCATACACATGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
47781569 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
47781618 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
47781665 CTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
47781712 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
47781759 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
47781808 CCTATCACATATATA
1 CTTATCACATATATA
47781823 TACTTGTACA
Statistics
Matches: 449, Mismatches: 32, Indels: 16
0.90 0.06 0.03
Matches are distributed among these distances:
46 2 0.00
47 366 0.82
49 79 0.18
50 2 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:47781648 original size:190 final size:190
Alignment explanation
Indices: 47781308--47781821 Score: 890
Period size: 190 Copynumber: 2.7 Consensus size: 190
47781298 TATACACTTC
* * *
47781308 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGG
* *
47781372 CCATTCGGCCTTAT--CTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCT
65 CCATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCT
47781435 CATATATGCATGTTCACATTCATCACATTGACCATTCGGCCTTATCACACATATACATGTT
130 CATATATGCATGTTCACATTCATCACATTGACCATTCGGCCTTATCACACATATACATGTT
*
47781496 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATACACATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
*
47781561 CATTCGACCTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
66 CATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
*
47781626 ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTT
131 ATATATGCATGTTCACATTCATCACATTGACCATTCGGCCTTATCACACATATACATGTT
*
47781686 CACATTCATCACATTGGCCATTCGGTCTTATCACACATACACATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
* * *
47781751 CATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGCCCTATCAC
66 CATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
47781816 ATATAT
131 ATATAT
47781822 ATACTTGTAC
Statistics
Matches: 309, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
187 1 0.00
188 71 0.23
190 237 0.77
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (190 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCACGCATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
ATATATGCATGTTCACATTCATCACATTGACCATTCGGCCTTATCACACATATACATGTT
Found at i:47784598 original size:47 final size:47
Alignment explanation
Indices: 47784538--47784700 Score: 172
Period size: 47 Copynumber: 3.5 Consensus size: 47
47784528 ATCCATAAGT
*
47784538 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGCTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGCTACATCTCAC
* * * * * * *
47784585 GAACTCGGACTCAACTCAATGAGTTCAGACG-TTCGCATCCA--T-AA
1 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGC-TACATCTCAC
* * *
47784629 GTAAACTCGGATTCAACTCAACAAGCTCAGATGCCTAGTTACATCTCAC
1 G--AACTCGGACTCAACTCAACGAGCTCAGATGCCTAGCTACATCTCAC
47784678 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
47784701 TTCGGACGTT
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 31 0.35
47 52 0.58
48 1 0.01
49 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGCTACATCTCAC
Found at i:47784618 original size:93 final size:93
Alignment explanation
Indices: 47784492--47784756 Score: 397
Period size: 93 Copynumber: 2.8 Consensus size: 93
47784482 ACCCATAAGT
* * * *
47784492 GAACTTGGACTCAACTCAACAAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
47784556 ACGAGCTCGGATGCCTAGCTACATCTCAC
65 ACGAGCTCGGATGCCTAGCTACATCTCAC
* * *
47784585 GAACTCGGACTCAACTCAATGAGTTCAGACGTTCGCATCCATAAGTAAACTCGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* * *
47784650 CAAGCTCAGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGCTACATCTCAC
* *
47784678 GAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
47784743 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
47784757 CAAAATTCGA
Statistics
Matches: 153, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
92 2 0.01
93 151 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGCTACATCTCAC
Found at i:47784745 original size:46 final size:46
Alignment explanation
Indices: 47784484--47784752 Score: 219
Period size: 46 Copynumber: 5.8 Consensus size: 46
47784474 TGTAACCCAC
* * *
47784484 CCATAAGTGAACTTGGACTCAACTCAACAAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGTTCGCAT
* * * *
47784530 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGC-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * * *
47784576 ACATCTCA-CGAACTCGGACTCAACTCAATGAGTTCAGACGTTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * *
47784623 CCATAAGTAAACTCGGATTCAACTCAACAAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* * *
47784673 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
47784716 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
47784753 TGCCCAAAAT
Statistics
Matches: 171, Mismatches: 37, Indels: 30
0.72 0.16 0.13
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
44 3 0.02
45 5 0.03
46 89 0.52
47 55 0.32
48 4 0.02
49 3 0.02
50 3 0.02
51 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:47790075 original size:27 final size:26
Alignment explanation
Indices: 47790017--47790075 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
47790007 TTGGATTCCG
47790017 GAGATGCAGTTGCTAAGAAGTTGCAA
1 GAGATGCAGTTGCTAAGAAGTTGCAA
* * * *
47790043 GTGATGCAGTTGCTGGATAAGTTGTAA
1 GAGATGCAGTTGCT-AAGAAGTTGCAA
47790070 GAGATG
1 GAGATG
47790076 TGAATGGAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.31, C:0.08, G:0.34, T:0.27
Consensus pattern (26 bp):
GAGATGCAGTTGCTAAGAAGTTGCAA
Found at i:47791816 original size:30 final size:29
Alignment explanation
Indices: 47791773--47791830 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
47791763 TGATTTTTGA
* *
47791773 AAATTGAATCAAATCAAAATTTCATGTATC
1 AAATTGAACCAAATC-AAAGTTCATGTATC
*
47791803 AAATTGCACCAAATCAAAGTTCATGTAT
1 AAATTGAACCAAATCAAAGTTCATGTAT
47791831 AGCTTTGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (29 bp):
AAATTGAACCAAATCAAAGTTCATGTATC
Found at i:47792685 original size:15 final size:15
Alignment explanation
Indices: 47792665--47792699 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
47792655 ATACGAATGA
47792665 CATGTCATTAGGAGT
1 CATGTCATTAGGAGT
47792680 CATGTCATTAGGAGT
1 CATGTCATTAGGAGT
*
47792695 TATGT
1 CATGT
47792700 GATTTGGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (15 bp):
CATGTCATTAGGAGT
Found at i:47814128 original size:31 final size:31
Alignment explanation
Indices: 47814090--47814183 Score: 170
Period size: 31 Copynumber: 3.0 Consensus size: 31
47814080 AGAAACAAAG
47814090 TAAGCTTTATAGCTTAGTAAGCCCGTATAAT
1 TAAGCTTTATAGCTTAGTAAGCCCGTATAAT
* *
47814121 TAAGCTTTATAGCTTGGTAAGCCTGTATAAT
1 TAAGCTTTATAGCTTAGTAAGCCCGTATAAT
47814152 TAAGCTTTATAGCTTAGTAAGCCCGTATAAT
1 TAAGCTTTATAGCTTAGTAAGCCCGTATAAT
47814183 T
1 T
47814184 TAGAATTTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (31 bp):
TAAGCTTTATAGCTTAGTAAGCCCGTATAAT
Found at i:47814559 original size:23 final size:23
Alignment explanation
Indices: 47814525--47814635 Score: 102
Period size: 23 Copynumber: 4.8 Consensus size: 23
47814515 TAAGCTGATG
*
47814525 AATAGTAAGCTCTATTGAGTTGA
1 AATAGTAAGCTCTATCGAGTTGA
* *
47814548 AATGGTAAGCTCTATCGAGCTG-
1 AATAGTAAGCTCTATCGAGTTGA
47814570 AATAGTAAGCTC-ATACGAGTTGA
1 AATAGTAAGCTCTAT-CGAGTTGA
* * *
47814593 AACAATAAGCTCTAAT-GAGATGAA
1 AATAGTAAGCTCT-ATCGAGTTG-A
* *
47814617 AACAGTAAGCTCTTTCGAG
1 AATAGTAAGCTCTATCGAG
47814636 CTGATATATC
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 35 0.49
24 16 0.22
25 2 0.03
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (23 bp):
AATAGTAAGCTCTATCGAGTTGA
Found at i:47817372 original size:46 final size:46
Alignment explanation
Indices: 47817305--47817479 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
47817295 TGTAACCCGC
*
47817305 CCATAAGTAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
47817351 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
47817401 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
47817444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
47817480 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:47817426 original size:93 final size:93
Alignment explanation
Indices: 47817314--47817483 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
47817304 CCCATAAGTA
** *
47817314 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
47817379 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
*
47817407 AACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
47817472 GAGTTCGGATGC
66 GAGCTCGGATGC
47817484 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:47823172 original size:46 final size:46
Alignment explanation
Indices: 47823105--47823270 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
47823095 GTAACCCGCT
* *
47823105 CATAAGTAAACTCGGTCTCAACTCAACGAGCTCGGGCGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
* *
47823151 CATAAGTGAACTCGGACTCAACTGAACGAGCTCGGATGCCTAGTT-ACAT-
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATC
* * * ** *
47823200 CA-CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
47823244 CATAAGTGAACTCGGACTCAACTCAAC
1 CATAAGTGAACTCGGACTCAACTCAAC
47823271 CAGTTCGGAT
Statistics
Matches: 97, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 52 0.54
47 25 0.26
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
Found at i:47823226 original size:93 final size:93
Alignment explanation
Indices: 47823113--47823282 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
47823103 CTCATAAGTA
* ** * *
47823113 AACTCGGTCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTGAAC
1 AACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
47823178 GAGCTCGGATGCCTAGTTACATCACACG
66 CAGCTCGGATGCCTAGTTACATCACACG
*
47823206 AACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
47823271 CAGTTCGGATGC
66 CAGCTCGGATGC
47823283 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
CAGCTCGGATGCCTAGTTACATCACACG
Found at i:47823298 original size:46 final size:45
Alignment explanation
Indices: 47823205--47823290 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
47823195 TACATCACAC
* * *
47823205 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACCAGTTCG-ACATGCGCAACCATAAGT
* *
47823251 GAACTCGGACTCAACTCAACCAGTTCG-GATGCTCAACCAT
1 GAACTCGGACTCAACTCAACCAGTTCGACATGCGCAACCAT
47823291 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACCAGTTCGACATGCGCAACCATAAGT
Found at i:47824651 original size:22 final size:22
Alignment explanation
Indices: 47824626--47824699 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 22
47824616 TTAAATATAC
47824626 GCCATATTAACATCATGAATAA
1 GCCATATTAACATCATGAATAA
* ** * *
47824648 GCCATTTTCGCATAATCAAATATA
1 GCCATATTAACATCAT-GAATA-A
47824672 CGCCATATTAACATCATGAATAA
1 -GCCATATTAACATCATGAATAA
47824695 GCCAT
1 GCCAT
47824700 TTTCGCATGG
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
22 17 0.44
23 5 0.13
24 5 0.13
25 12 0.31
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (22 bp):
GCCATATTAACATCATGAATAA
Found at i:47824669 original size:47 final size:47
Alignment explanation
Indices: 47824611--47824707 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
47824601 GAGCTCAATA
*
47824611 CATAATTAAATATACGCCATATTAACATCATGAATAAGCCATTTTCG
1 CATAATCAAATATACGCCATATTAACATCATGAATAAGCCATTTTCG
47824658 CATAATCAAATATACGCCATATTAACATCATGAATAAGCCATTTTCG
1 CATAATCAAATATACGCCATATTAACATCATGAATAAGCCATTTTCG
47824705 CAT
1 CAT
47824708 GGCCATATAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (47 bp):
CATAATCAAATATACGCCATATTAACATCATGAATAAGCCATTTTCG
Found at i:47825611 original size:43 final size:43
Alignment explanation
Indices: 47825563--47825786 Score: 261
Period size: 43 Copynumber: 5.4 Consensus size: 43
47825553 TTCAACGAAC
* *
47825563 TCGCACACTTAGTGCCGATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* * * *
47825606 TCGCACACTTAGTGCTAATTATTTGGCCGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
*
47825649 TCG----C--A----CAATTAATTAGCCGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* *
47825682 TCACACACTTAGTGCCAATTAATTAGCCGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
* * * *
47825725 TCGTACACTTAATGCCAATTAATTGGCCGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
47825768 TCGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
47825787 ACATTAAACC
Statistics
Matches: 155, Mismatches: 16, Indels: 20
0.81 0.08 0.10
Matches are distributed among these distances:
33 27 0.17
37 2 0.01
39 2 0.01
43 124 0.80
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTA
Found at i:47825668 original size:33 final size:33
Alignment explanation
Indices: 47825622--47825688 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
47825612 ACTTAGTGCT
* * *
47825622 AATTATTTGGCCGAGGCTATAATTGTATCGCAC
1 AATTAATTAGCCGAGGCTATAATTGTATCACAC
47825655 AATTAATTAGCCGAGGCTATAATTGTATCACAC
1 AATTAATTAGCCGAGGCTATAATTGTATCACAC
47825688 A
1 A
47825689 CTTAGTGCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (33 bp):
AATTAATTAGCCGAGGCTATAATTGTATCACAC
Found at i:47825711 original size:76 final size:76
Alignment explanation
Indices: 47825580--47825737 Score: 244
Period size: 76 Copynumber: 2.1 Consensus size: 76
47825570 CTTAGTGCCG
* * * * *
47825580 ATTAATTAGCTGAAGCTATAATTGTATCGCACACTTAGTGCTAATTATTTGGCCGAGGCTATAAT
1 ATTAATTAGCCGAAGCTATAATTGTATCACACACTTAGTGCCAATTAATTAGCCGAGGCTATAAT
47825645 TGTATCGCACA
66 TGTATCGCACA
*
47825656 ATTAATTAGCCGAGGCTATAATTGTATCACACACTTAGTGCCAATTAATTAGCCGAGGCTATAAT
1 ATTAATTAGCCGAAGCTATAATTGTATCACACACTTAGTGCCAATTAATTAGCCGAGGCTATAAT
*
47825721 TGTATCGTACA
66 TGTATCGCACA
*
47825732 CTTAAT
1 ATTAAT
47825738 GCCAATTAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (76 bp):
ATTAATTAGCCGAAGCTATAATTGTATCACACACTTAGTGCCAATTAATTAGCCGAGGCTATAAT
TGTATCGCACA
Found at i:47835511 original size:55 final size:55
Alignment explanation
Indices: 47835420--47835588 Score: 168
Period size: 55 Copynumber: 3.1 Consensus size: 55
47835410 CGGAGATGTA
* * * * *
47835420 ATCCTTGCCTTATGAA-CTTTCCAA-TGTCACGCCTTGACATGGTCTTGCATGGG
1 ATCCTTGCCTTATAAACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGGG
* * * * *
47835473 A-CCTTTGTCTTATAGTAA-CTTATCAA-TGCCATGTCTTGACACGGTCTTACATGGT
1 ATCC-TTGCCTTATA--AACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGGG
* *
47835528 ATCCTTGCCTTATAAACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGT
1 ATCCTTGCCTTATAAACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGGG
47835583 ATCCTT
1 ATCCTT
47835589 AAACCCTAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 11 0.12
54 7 0.07
55 73 0.77
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (55 bp):
ATCCTTGCCTTATAAACCTTACCAATTGCCATGCCTTGACATGGTCTTACATGGG
Found at i:47842147 original size:27 final size:27
Alignment explanation
Indices: 47842117--47842196 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
47842107 ATCTCATATA
**
47842117 TGTAAGCTAGTGTTACTGAAATACCCC
1 TGTAAGCTAGAATTACTGAAATACCCC
* *
47842144 TGTAGGCTAGAATTACTGAAATGCCCC
1 TGTAAGCTAGAATTACTGAAATACCCC
* * * *
47842171 TGTAGGGTAGAATTATTAAAATACCC
1 TGTAAGCTAGAATTACTGAAATACCC
47842197 TTGGTTTAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (27 bp):
TGTAAGCTAGAATTACTGAAATACCCC
Found at i:47842219 original size:26 final size:26
Alignment explanation
Indices: 47842190--47842239 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
47842180 GAATTATTAA
47842190 AATACCCTTGGTTTAAAAAATTACTG
1 AATACCCTTGGTTTAAAAAATTACTG
*
47842216 AATACCCTTGGTTTACAAAATTAC
1 AATACCCTTGGTTTAAAAAATTAC
47842240 CAAAATACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (26 bp):
AATACCCTTGGTTTAAAAAATTACTG
Found at i:47842433 original size:54 final size:54
Alignment explanation
Indices: 47842188--47842441 Score: 203
Period size: 54 Copynumber: 4.7 Consensus size: 54
47842178 TAGAATTATT
* * * * * **
47842188 AAAATACCCTTGGTTTAAAAAATTACTG-AATACCCTTGGTTTACAAAATTACC
1 AAAATACCCCTGATTTATAAAATTACAGAAATACCCTTGATTTGTAAAATTACC
* * * *
47842241 AAAATACCCCTTATTTATAAAATTA-AGGAATTACCCCTGATTTCTAAAATTACC
1 AAAATACCCCTGATTTATAAAATTACA-GAAATACCCTTGATTTGTAAAATTACC
* * * *
47842295 AAAATA-CCTTCGACTTGTAAAATTACTA-AAAT-CCATTGATTTGTAAAATTACC
1 AAAATACCCCT-GATTTATAAAATTAC-AGAAATACCCTTGATTTGTAAAATTACC
* ** *** * * * *
47842348 AAAATACCTCTGATTTGGAAAATTTTTGAAATACCTTTAATTTGGAAAATTACA
1 AAAATACCCCTGATTTATAAAATTACAGAAATACCCTTGATTTGTAAAATTACC
* *
47842402 AAAATACCCCTGATTTACAAAATTACAGAAATACTCTTGA
1 AAAATACCCCTGATTTATAAAATTACAGAAATACCCTTGA
47842442 CTTTCAAAAT
Statistics
Matches: 155, Mismatches: 38, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
53 64 0.41
54 90 0.58
56 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.33
Consensus pattern (54 bp):
AAAATACCCCTGATTTATAAAATTACAGAAATACCCTTGATTTGTAAAATTACC
Found at i:47842500 original size:27 final size:27
Alignment explanation
Indices: 47842188--47842522 Score: 175
Period size: 27 Copynumber: 12.4 Consensus size: 27
47842178 TAGAATTATT
* **
47842188 AAAATACCCTTGGTTTAAAAAATTA-C
1 AAAATACCCTTGATTTGCAAAATTACC
** * *
47842214 TGAATACCCTTGGTTTACAAAATTACC
1 AAAATACCCTTGATTTGCAAAATTACC
** **
47842241 AAAATACCCCTT-ATTTATAAAATTAAG
1 AAAATA-CCCTTGATTTGCAAAATTACC
* * *
47842268 GAATTACCCCTGATTT-CTAAAATTACC
1 AAAATACCCTTGATTTGC-AAAATTACC
* * *
47842295 AAAATA-CCTTCGACTTGTAAAATTACT
1 AAAATACCCTT-GATTTGCAAAATTACC
* *
47842322 AAAAT-CCATTGATTTGTAAAATTACC
1 AAAATACCCTTGATTTGCAAAATTACC
* ***
47842348 AAAATA-CCTCTGATTTGGAAAATTTTT
1 AAAATACCCT-TGATTTGCAAAATTACC
* * * * *
47842375 GAAATACCTTTAATTTGGAAAATTACA
1 AAAATACCCTTGATTTGCAAAATTACC
* *
47842402 AAAATACCCCTGATTTACAAAATTA-C
1 AAAATACCCTTGATTTGCAAAATTACC
* *
47842428 AGAAATACTCTTGACTTT-CAAAATTTTA-A
1 A-AAATACCCTTGA-TTTGCAAAA--TTACC
* *
47842457 AAAATACCATTGGTTTGCAAAATTACC
1 AAAATACCCTTGATTTGCAAAATTACC
* * * * *
47842484 TAAATACCCTTGGTTTGTAGATTTACC
1 AAAATACCCTTGATTTGCAAAATTACC
*
47842511 AAAACACCCTTG
1 AAAATACCCTTG
47842523 TAGGGTGAAA
Statistics
Matches: 237, Mismatches: 56, Indels: 31
0.73 0.17 0.10
Matches are distributed among these distances:
26 54 0.23
27 155 0.65
28 24 0.10
29 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAAATACCCTTGATTTGCAAAATTACC
Found at i:47842805 original size:41 final size:41
Alignment explanation
Indices: 47842760--47842925 Score: 251
Period size: 41 Copynumber: 4.0 Consensus size: 41
47842750 GGATGAAGAA
* *
47842760 ATTGAGGATCGTATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
47842801 ATTGAAGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
47842842 ATTGAGGATCGCATGGTTTCTTGATGACCGTGGATCAACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* *
47842883 ATTAAGGATCGCATGGTTGCTTGGCGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
47842924 AT
1 AT
47842926 GGCTTTTAAG
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 111 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:47843345 original size:22 final size:22
Alignment explanation
Indices: 47843313--47843358 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
47843303 ATTGTTATGA
*
47843313 TGTTTACGGCTATGTGCTGTCC
1 TGTTTAAGGCTATGTGCTGTCC
*
47843335 TGTTTAAGGCTATGTGTTGTCC
1 TGTTTAAGGCTATGTGCTGTCC
47843357 TG
1 TG
47843359 ACTACGGCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.17, G:0.28, T:0.43
Consensus pattern (22 bp):
TGTTTAAGGCTATGTGCTGTCC
Found at i:47846067 original size:27 final size:27
Alignment explanation
Indices: 47846044--47846108 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
47846034 AGTATTACCT
* *
47846044 AAATACGCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACTA
* * *
47846071 AAATGCCCCTATAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACTA
47846098 AAATACCCTTG
1 AAATACCCTTG
47846109 GTTTACAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACTA
Found at i:47846120 original size:27 final size:27
Alignment explanation
Indices: 47846090--47846486 Score: 225
Period size: 27 Copynumber: 14.7 Consensus size: 27
47846080 TATAGGGTAG
* *
47846090 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGGTTTATAA
*** *
47846117 AATTACCAAAATACCC-TCAATTAGCAA
1 AATTACCAAAATACCCTTGGTTTA-TAA
* *
47846144 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
47846171 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
47846198 AATTACCAAAATACCCCTGATTTATGA
1 AATTACCAAAATACCCTTGGTTTATAA
*** *
47846225 AATTACCAAAATACCCTTGACCTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* ** *
47846252 AATTACCGAAATACCCACGACTTT-TAA
1 AATTACCAAAATACCCTTG-GTTTATAA
* * * *
47846279 AATTACCGAAGT-CCCTGGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* **
47846305 AATTACCAGAATACCCTTAATTT-TGAA
1 AATTACCAAAATACCCTTGGTTTAT-AA
* * * **
47846332 AATTATCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * ** *
47846359 AATTA-CAGAATTACCCCTAATTTACAA
1 AATTACCA-AAATACCCTTGGTTTATAA
* * *
47846386 AATTA-TAGAAATATCCTTGACTTTCA-AA
1 AATTACCA-AAATACCCTTG-GTTT-ATAA
* * **
47846414 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACCA-AAATACCCTTGGTTTATAA
* * *
47846441 AATTACCAAAATACCCTTAGTTTTTAG
1 AATTACCAAAATACCCTTGGTTTATAA
* *
47846468 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
47846487 TAGGGTGAAA
Statistics
Matches: 293, Mismatches: 65, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
25 3 0.01
26 22 0.08
27 240 0.82
28 27 0.09
29 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:47846242 original size:54 final size:54
Alignment explanation
Indices: 47846090--47846458 Score: 284
Period size: 54 Copynumber: 6.8 Consensus size: 54
47846080 TATAGGGTAG
* * * * ** * *
47846090 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTAGCAA
1 AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGATTTGTAA
* * *
47846144 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGATTTGTAA
* **
47846198 AATTACCAAAATACCCCTGATTTATGAAATTACCAAAATACCCTTGACCTGTAA
1 AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGATTTGTAA
* * * * *
47846252 AATTACCGAAATACCCAC-GACTTT-TAAAATTACCGAAGT-CCCTGGGTTTGTAA
1 AATTACCAAAATACCC-CTGA-TTTATAAAATTACCAAAATACCCTTGATTTGTAA
* * * * * *
47846305 AATTACCAGAATACCCTTAATTT-TGAAAATTATCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCCTGATTTAT-AAAATTACCAAAATACCCTTGATTTGTAA
* * * * * **
47846359 AATTA-CAGAATTACCCCTAATTTACAAAATTA-TAGAAATATCCTTGACTTTCAAA
1 AATTACCA-AAATACCCCTGATTTATAAAATTACCA-AAATACCCTTGA-TTTGTAA
* ** * **
47846414 AATTA-TAGAAATACCATTGGTTTGCAAAATTACCAAAATACCCTT
1 AATTACCA-AAATACCCCTGATTTATAAAATTACCAAAATACCCTT
47846459 AGTTTTTAGA
Statistics
Matches: 255, Mismatches: 50, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.02
53 39 0.15
54 168 0.66
55 43 0.17
56 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTTGATTTGTAA
Found at i:47846349 original size:107 final size:108
Alignment explanation
Indices: 47846116--47846376 Score: 280
Period size: 107 Copynumber: 2.4 Consensus size: 108
47846106 TTGGTTTACA
* ** * * *
47846116 AAATTACCAAAATACCC-TCAATTAGCAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTTGACCT-GGAAAATTACCGAAATACCCCTGCTTTGTAAAATTACCAA
* *
47846180 AATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTATG
65 AATACCCTGGGTTTGTAAAATTACCAAAATACCCCTAATTTATG
* *
47846224 AAATTACCAAAATACCCTTGACCTGTAAAATTACCGAAATACCCAC-GACTTT-TAAAATTACCG
1 AAATTACCAAAATACCCTTGACCTGGAAAATTACCGAAATACCC-CTG-CTTTGTAAAATTACCA
* * *
47846287 AAGT-CCCTGGGTTTGTAAAATTACCAGAATACCCTTAATTT-TG
64 AAATACCCTGGGTTTGTAAAATTACCAAAATACCCCTAATTTATG
* * ** * *
47846330 AAAATTATCGAAATACCCTTGATTTGGAAAATTACAGAATTACCCCT
1 -AAATTACCAAAATACCCTTGACCTGGAAAATTACCGAAATACCCCT
47846377 AATTTACAAA
Statistics
Matches: 129, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
106 3 0.02
107 70 0.54
108 49 0.38
109 7 0.05
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (108 bp):
AAATTACCAAAATACCCTTGACCTGGAAAATTACCGAAATACCCCTGCTTTGTAAAATTACCAAA
ATACCCTGGGTTTGTAAAATTACCAAAATACCCCTAATTTATG
Found at i:47846388 original size:134 final size:136
Alignment explanation
Indices: 47846142--47846483 Score: 322
Period size: 134 Copynumber: 2.5 Consensus size: 136
47846132 CTCAATTAGC
*
47846142 AAAATTACCA-AAATACCCCTGGTTTGTAAAATTACCAAAATACCCTT-GGTTTGTAAAATTACC
1 AAAATTA-CAGAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTTGTAAAATTACC
* * * ** *
47846205 AAAATACCCCTGATTTATGAAATTACCAAAATACCCTTGACCTGTAAAATTACCGAAATACCCAC
64 AAAATACCCCTGATTTAGGAAATTACCAAAATACCCCTAACCTACAAAATTACAGAAATACCCAC
*
47846270 GACTTT-T
129 GACTTTCA
* * * * * *
47846277 AAAATTACCGAAGT-CCCTGGGTTTGTAAAATTACCAGAATACCCTTAATTTTG-AAAATTATCG
1 AAAATTACAGAAATACCCT-GGTTTGTAAAATTACCAAAATACCCTTAGTTTTGTAAAATTACCA
* * ** * * *
47846340 AAATACCCTTGATTT-GGAAAATTA-CAGAATTACCCCTAATTTACAAAATTATAGAAATATCCT
65 AAATACCCCTGATTTAGG-AAATTACCA-AAATACCCCTAACCTACAAAATTACAGAAATACCCA
*
47846403 TGACTTTCA
128 CGACTTTCA
* * * * *
47846412 AAAATTATAGAAATACCATTGGTTTGCAAAATTACCAAAATACCCTTAGTTTT-TAGATTTACCA
1 AAAATTACAGAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTTAGTTTTGTAAAATTACCA
*
47846476 AAACACCC
65 AAATACCC
47846484 TTGTAGGGTG
Statistics
Matches: 164, Mismatches: 34, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
133 7 0.04
134 86 0.52
135 25 0.15
136 45 0.27
137 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (136 bp):
AAAATTACAGAAATACCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTTGTAAAATTACCAA
AATACCCCTGATTTAGGAAATTACCAAAATACCCCTAACCTACAAAATTACAGAAATACCCACGA
CTTTCA
Found at i:47846769 original size:41 final size:41
Alignment explanation
Indices: 47846724--47846846 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
47846714 GAAGAAAGAA
*
47846724 ATTGAGGATCGCATGGTTGCTTGACGATTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* * * * *
47846765 ATTGAGGGTTGCATGGTTGCTTGACGACCATGGATCCACCA
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* *
47846806 ATTAAGAATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
47846847 GTGGATTTTA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
Found at i:47847859 original size:17 final size:17
Alignment explanation
Indices: 47847833--47847879 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
47847823 TTCCGCAGCA
* *
47847833 AATAAAGTTTTAAAGGT
1 AATAACGTTTTAAAGAT
47847850 AATAACGTTTTACAAGAT
1 AATAACGTTTTA-AAGAT
*
47847868 AATGAC-TTTTAA
1 AATAACGTTTTAA
47847880 TAAACCAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 1 0.04
17 16 0.62
18 9 0.35
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (17 bp):
AATAACGTTTTAAAGAT
Found at i:47849369 original size:27 final size:27
Alignment explanation
Indices: 47849327--47849544 Score: 92
Period size: 27 Copynumber: 8.1 Consensus size: 27
47849317 AATCTCATAT
* * *
47849327 CTATAGGCTAGTATTACCGAAATACCC
1 CTATAGGGTAGAATTACCAAAATACCC
* * *
47849354 CTGTAGGGTAGAATTACTAAAATGCCC
1 CTATAGGGTAGAATTACCAAAATACCC
* * *
47849381 CTATAGGGTGGAATTACTAAAATA-CT
1 CTATAGGGTAGAATTACCAAAATACCC
* *
47849407 CT-T-GGTTTACAAAATTACCAAAATACCC
1 CTATAGG-GT--AGAATTACCAAAATACCC
* * *
47849435 TCGATTA--GCAAAATTACCAAAATACCC
1 -CTA-TAGGGTAGAATTACCAAAATACCC
** *
47849462 CTAGT-TTGTAAAATTACCAAAATACCC
1 CTA-TAGGGTAGAATTACCAAAATACCC
* ** *
47849489 CTGGT-TTGTAAAATTACCAAAATACCC
1 CT-ATAGGGTAGAATTACCAAAATACCC
** *
47849516 CTAGT-TTGTAAAATTACCAAAATACCC
1 CTA-TAGGGTAGAATTACCAAAATACCC
47849543 CT
1 CT
47849545 GATTTATGAA
Statistics
Matches: 156, Mismatches: 23, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
24 2 0.01
25 2 0.01
26 6 0.04
27 143 0.92
28 1 0.01
29 1 0.01
31 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
CTATAGGGTAGAATTACCAAAATACCC
Found at i:47849477 original size:81 final size:81
Alignment explanation
Indices: 47849392--47849544 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 81
47849382 TATAGGGTGG
* * *
47849392 AATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATACCCTCGA-TTAGCAAAATTACCAAA
1 AATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCC-CGAGTTAGCAAAATTACCAAA
47849456 ATACCCCTAGTTTGTAA
65 ATACCCCTAGTTTGTAA
** * * *
47849473 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTTAGCAAAATTACCAAAA
47849538 TACCCCT
66 TACCCCT
47849545 GATTTATGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.03
81 61 0.97
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTTAGCAAAATTACCAAAA
TACCCCTAGTTTGTAA
Found at i:47849556 original size:27 final size:27
Alignment explanation
Indices: 47849417--47849809 Score: 287
Period size: 27 Copynumber: 14.6 Consensus size: 27
47849407 CTTGGTTTAC
* *
47849417 AAAATTACCAAAATA-CCCTCGATTAGC
1 AAAATTACCAAAATACCCCT-GATTTGT
47849444 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
47849471 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
47849498 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
47849525 AAAATTACCAAAATACCCCTGATTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * * *
47849552 GAAATTAACGAAATACCCTTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
** * **
47849579 AAAATTACTGAAATACCCTTGACCTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* ** *
47849606 AAAATTACCGAAATACCTTTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
47849633 AAAATTATCAGAATACCCCTGATTTGG
1 AAAATTACCAAAATACCCCTGATTTGT
* * * * *
47849660 AAAATTATCGAAATACTCTTGATTTGG
1 AAAATTACCAAAATACCCCTGATTTGT
* **
47849687 AAAATTA-CAGAAATACCCC-CATTTAC
1 AAAATTACCA-AAATACCCCTGATTTGT
* ** * *
47849713 AAAATTACAAAAATACCATTGGCTTT-C
1 AAAATTACCAAAATACCCCT-GATTTGT
* ** * *
47849740 AGAAATTA-CAGAAATATCATTGGTTTGC
1 A-AAATTACCA-AAATACCCCTGATTTGT
* *
47849768 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
47849795 AGATTTACCAAAATA
1 AAAATTACCAAAATA
47849810 GCCTTGTATG
Statistics
Matches: 305, Mismatches: 48, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
26 20 0.07
27 258 0.85
28 27 0.09
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:47850097 original size:41 final size:41
Alignment explanation
Indices: 47850056--47850256 Score: 294
Period size: 41 Copynumber: 4.9 Consensus size: 41
47850046 GAAGAAATTG
* *
47850056 AGGATCACATGGTTGCTTGACGACCGTGGATCCACCGATTG
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
*
47850097 AGGATCGCATGGTTGCTTGACGACCGTGGATCCATCGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * *
47850138 AGGATCGCATGGTTGCTTGACGATCATGGATCCACTGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * *
47850179 AGGATCGCATGGTTGCTTGATGATCGTGGATCCACCGACTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * *
47850220 AGGATCACGTGGTTGCTTGACGACTGTGGATCCACCG
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
47850257 GTGACTTTTA
Statistics
Matches: 144, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 144 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:47850450 original size:22 final size:23
Alignment explanation
Indices: 47850401--47850451 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
47850391 AATTATTCTG
*
47850401 ATTATGGCTTTGCGCCAACCTAC
1 ATTATGGCTCTGCGCCAACCTAC
*
47850424 A-TATGGCTCTGTGCCAACCTA-
1 ATTATGGCTCTGCGCCAACCTAC
47850445 ATTATGG
1 ATTATGG
47850452 TTGTGTGCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (23 bp):
ATTATGGCTCTGCGCCAACCTAC
Found at i:47850458 original size:22 final size:22
Alignment explanation
Indices: 47850401--47850459 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
47850391 AATTATTCTG
*
47850401 ATTATGGCTTTGCGCCAACCTAC
1 ATTATGG-TTTGTGCCAACCTAC
*
47850424 A-TATGGCTCTGTGCCAACCTA-
1 ATTATGG-TTTGTGCCAACCTAC
47850445 ATTATGGTTGTGTGC
1 ATTATGGTT-TGTGC
47850460 ACAAACGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 2 0.06
22 28 0.90
23 1 0.03
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATTATGGTTTGTGCCAACCTAC
Found at i:47850613 original size:22 final size:22
Alignment explanation
Indices: 47850588--47850634 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
47850578 TATGGCAGCG
47850588 GTGCTG-CGATGTTTACGGCTAT
1 GTGCTGTC-ATGTTTACGGCTAT
* *
47850610 GTGCTGTCCTGTTTACGGCTCT
1 GTGCTGTCATGTTTACGGCTAT
47850632 GTG
1 GTG
47850635 TTATCCCGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.09, C:0.21, G:0.32, T:0.38
Consensus pattern (22 bp):
GTGCTGTCATGTTTACGGCTAT
Found at i:47853524 original size:55 final size:54
Alignment explanation
Indices: 47853307--47853537 Score: 203
Period size: 55 Copynumber: 4.4 Consensus size: 54
47853297 CATGACTTTT
* * * * *
47853307 CATGGTCTTACATGGTATCCTT----TTGAAACTTACCATTGCCATGTC-TCGA
1 CATGGTCTTACATGGTATCCTTGCCATAGAAACTTATCAATGCCATGCCTTGGA
* * * *
47853356 CATGGCCTTACATGGTATCCTTGCCTTATG-AACTCACCAATGCCATGCCTTGG-
1 CATGGTCTTACATGGTATCCTTGCCATA-GAAACTTATCAATGCCATGCCTTGGA
* * * * * *
47853409 CATGGTCTTACATGGGA-CCTTTGGCTTATAGTAACTTATCAATGTCACGTCTT-GA
1 CATGGTCTTACATGGTATCC-TT-GC-CATAGAAACTTATCAATGCCATGCCTTGGA
47853464 CATGGTCTTACATGGTATCCTTGCCATAGAAACCTTATCAATTGCCATGCCTTGGA
1 CATGGTCTTACATGGTATCCTTGCCATAGAAA-CTTATCAA-TGCCATGCCTTGGA
47853520 -ATGGTCTTACATGGTATC
1 CATGGTCTTACATGGTATC
47853538 TTTAAACCCT
Statistics
Matches: 146, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
49 21 0.14
52 2 0.01
53 40 0.27
54 17 0.12
55 62 0.42
56 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCATAGAAACTTATCAATGCCATGCCTTGGA
Found at i:47864523 original size:19 final size:19
Alignment explanation
Indices: 47864501--47864537 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47864491 ATGGGGTAAG
47864501 AGAAATTTATATGAGATAA
1 AGAAATTTATATGAGATAA
*
47864520 AGAAATTTATGTGAGATA
1 AGAAATTTATATGAGATA
47864538 TATCAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (19 bp):
AGAAATTTATATGAGATAA
Found at i:47873564 original size:47 final size:47
Alignment explanation
Indices: 47873502--47873601 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 47
47873492 AGTTGAGTTT
* *
47873502 GAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGCCC
1 GAGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGCCC
* *
47873549 GAGTTCGTGAAATGTAACTAGGCATTCGAACTCGTTGAGTTGAGTCC
1 GAGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGCCC
*
47873596 AAGTTC
1 GAGTTC
47873602 ACTTATGGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (47 bp):
GAGTTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGCCC
Found at i:47879192 original size:47 final size:47
Alignment explanation
Indices: 47879107--47879229 Score: 174
Period size: 47 Copynumber: 2.6 Consensus size: 47
47879097 ATGGTTGAGT
* * *
47879107 TCCGAACTCGCTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTCAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * *
47879154 TTCGAGCTCGTTCAGTTGAGCCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTCAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* *
47879201 TCCGAACTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTCAGTTGAGTCCGAGTTC
47879230 ACTTATGGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTCAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:47882708 original size:24 final size:24
Alignment explanation
Indices: 47882652--47882739 Score: 81
Period size: 24 Copynumber: 3.6 Consensus size: 24
47882642 CACCAGCTCG
* * *
47882652 TATGAGCTTACCGATATATCAACTCG
1 TATGAGCTTACTG-T-TTTCAACTCA
*
47882678 TAAGAGCTTACTGTTTTCAACTCA
1 TATGAGCTTACTGTTTTCAACTCA
* *
47882702 T-TGGAGCTTACCG-TTTCAACTCG
1 TAT-GAGCTTACTGTTTTCAACTCA
47882725 TATGAGCTTACTGTT
1 TATGAGCTTACTGTT
47882740 CAGCTTGAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 19 0.37
24 20 0.39
25 1 0.02
26 11 0.22
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (24 bp):
TATGAGCTTACTGTTTTCAACTCA
Found at i:47882753 original size:22 final size:23
Alignment explanation
Indices: 47882728--47882804 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
47882718 CAACTCGTAT
*
47882728 GAGCTTACTGT-TCAGCTTGAA-A
1 GAGCTTACTGTATCAGC-TCAATA
*
47882750 GAGCTTGCTGTATCAGCTCAATA
1 GAGCTTACTGTATCAGCTCAATA
* * *
47882773 GAGCTTACCGTTTCAACTCAATA
1 GAGCTTACTGTATCAGCTCAATA
47882796 GAGCTTACT
1 GAGCTTACT
47882805 ATTCATCAGC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
22 13 0.28
23 33 0.72
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (23 bp):
GAGCTTACTGTATCAGCTCAATA
Found at i:47887933 original size:79 final size:82
Alignment explanation
Indices: 47887815--47887999 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
47887805 GCTACTCGTT
* * *
47887815 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47887878 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
47887895 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
47887958 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
47887975 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47888000 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:47887999 original size:40 final size:40
Alignment explanation
Indices: 47887796--47887999 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
47887786 TCGAATTTAA
** *
47887796 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
47887836 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47887876 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47887915 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47887955 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47887995 CCGGA
1 CCGGA
47888000 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47895840 original size:79 final size:82
Alignment explanation
Indices: 47895729--47895913 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
47895719 GCTACTCGTT
* * *
47895729 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
47895792 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
47895809 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
47895872 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
47895889 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47895914 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:47895913 original size:40 final size:40
Alignment explanation
Indices: 47895710--47895913 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
47895700 CGGAATTTAA
** *
47895710 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
47895750 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
47895790 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
47895829 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
47895869 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
47895909 CCGGA
1 CCGGA
47895914 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:47898387 original size:11 final size:11
Alignment explanation
Indices: 47898371--47898400 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
47898361 CTTCGGACAT
47898371 ATTCAACAATG
1 ATTCAACAATG
*
47898382 ATTCAACGATG
1 ATTCAACAATG
47898393 ATTCAACA
1 ATTCAACA
47898401 TTGCTGAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (11 bp):
ATTCAACAATG
Found at i:47910470 original size:79 final size:81
Alignment explanation
Indices: 47910334--47910518 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
47910324 TTGAATGATG
* *
47910334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
47910398 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
47910413 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47910475 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
47910493 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47910519 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:47910532 original size:40 final size:40
Alignment explanation
Indices: 47910335--47910518 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
47910325 TGAATGATGT
* * * *
47910335 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
47910375 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
47910415 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
47910453 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
47910494 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47910519 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:47910540 original size:79 final size:79
Alignment explanation
Indices: 47910387--47910551 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47910377 GGACTAAGAT
* * **
47910387 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47910452 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47910466 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47910529 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47910545 CCGAAGG
1 CCGAAGG
47910552 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47915324 original size:40 final size:40
Alignment explanation
Indices: 47915241--47915503 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
47915231 TTGAATGCTG
* * * * * *
47915241 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
47915281 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
47915321 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
47915361 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
47915401 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
47915441 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
47915480 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
47915504 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:47915523 original size:79 final size:80
Alignment explanation
Indices: 47915280--47915538 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
47915270 AAGTGAATAT
* * * * * * *
47915280 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
47915344 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
47915360 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
47915425 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
47915440 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
47915504 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
47915519 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
47915539 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:47921510 original size:40 final size:39
Alignment explanation
Indices: 47921426--47921609 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
47921416 TTGAATGATG
* * * *
47921426 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
47921466 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
47921506 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47921544 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
47921585 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
47921610 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47921561 original size:78 final size:80
Alignment explanation
Indices: 47921426--47921609 Score: 207
Period size: 78 Copynumber: 2.3 Consensus size: 80
47921416 TTGAATGATG
* *
47921426 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
47921490 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
47921505 TTCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
47921567 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
47921584 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
47921610 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 56 0.63
79 8 0.09
80 24 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:47925149 original size:15 final size:15
Alignment explanation
Indices: 47925131--47925298 Score: 80
Period size: 16 Copynumber: 10.7 Consensus size: 15
47925121 TATATTTCTA
47925131 TATTATTTATTTTAT
1 TATTATTTATTTTAT
*
47925146 TATTCTATCTATTATTA-
1 TA-T-TATTTATT-TTAT
*
47925163 TATTATCTATTATTATAT
1 TATTA--T-TTATTTTAT
47925181 TATCTATTTATATATTAT
1 TAT-TATTTAT-T-TTAT
47925199 TATTATTT-TTATATAT
1 TATTATTTATT-T-TAT
* *
47925215 TTTTATTTCTATTTAGT
1 TATTATTTAT-TTTA-T
47925232 TATTATTTA-TTT-T
1 TATTATTTATTTTAT
* *
47925245 TATT-TCTATTTAAT
1 TATTATTTATTTTAT
47925259 TATTATTTATTTTTAT
1 TATTATTTA-TTTTAT
**
47925275 T-TCTATTT-GGTTAT
1 TAT-TATTTATTTTAT
47925289 TATTATTTAT
1 TATTATTTAT
47925299 GAAGAAAATG
Statistics
Matches: 118, Mismatches: 14, Indels: 42
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 7 0.06
14 15 0.13
15 15 0.13
16 30 0.25
17 29 0.25
18 17 0.14
19 2 0.02
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTTATTTTAT
Found at i:47925229 original size:10 final size:9
Alignment explanation
Indices: 47925133--47925276 Score: 54
Period size: 8 Copynumber: 15.7 Consensus size: 9
47925123 TATTTCTATA
47925133 TTATTTATT
1 TTATTTATT
47925142 TTA-TTATT
1 TTATTTATT
* *
47925150 CTATCTATT
1 TTATTTATT
47925159 ATTATATTATCT
1 -TTAT-TTAT-T
*
47925171 ATTA-TTATA
1 -TTATTTATT
*
47925180 TTATCTA-T
1 TTATTTATT
*
47925188 TTATATATT
1 TTATTTATT
47925197 ATTA-TTATT
1 -TTATTTATT
* *
47925206 TT-TATATA
1 TTATTTATT
47925214 TT-TTTATT
1 TTATTTATT
47925222 TCTATTTAGTT
1 T-TATTTA-TT
47925233 ATTATTTA--
1 -TTATTTATT
47925241 TT-TTTATT
1 TTATTTATT
47925249 TCTATTTAATT
1 T-TATTT-ATT
47925260 ATTATTTATTT
1 -TTATTTA-TT
47925271 TTATTT
1 TTATTT
47925277 CTATTTGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 37
0.67 0.08 0.24
Matches are distributed among these distances:
6 4 0.04
7 2 0.02
8 29 0.28
9 16 0.16
10 24 0.23
11 21 0.20
12 7 0.07
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (9 bp):
TTATTTATT
Found at i:47925237 original size:27 final size:27
Alignment explanation
Indices: 47925207--47925296 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
47925197 ATTATTATTT
*
47925207 TTATATATTTTTATTTCTATTTAGTTA
1 TTATTTATTTTTATTTCTATTTAGTTA
*
47925234 TTATTTATTTTTATTTCTATTTAATTA
1 TTATTTATTTTTATTTCTATTTAGTTA
*
47925261 TTATTTATTTTTATTTCTATTTGGTTA
1 TTATTTATTTTTATTTCTATTTAGTTA
47925288 TTA-TTATTT
1 TTATTTATTT
47925297 ATGAAGAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
26 6 0.10
27 53 0.90
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.70
Consensus pattern (27 bp):
TTATTTATTTTTATTTCTATTTAGTTA
Found at i:47925243 original size:54 final size:54
Alignment explanation
Indices: 47925178--47925298 Score: 156
Period size: 54 Copynumber: 2.3 Consensus size: 54
47925168 TCTATTATTA
* * *
47925178 TATTATCTATTTATATAT-TATTATTATTTTTATATATTTTTATTTCTATTTAGT
1 TATTATTTATTTATATATCTATT-TAATTATTATATATTTTTATTTCTATTTAGT
* * * *
47925232 TATTATTTATTTTTATTTCTATTTAATTATTATTTATTTTTATTTCTATTTGGT
1 TATTATTTATTTATATATCTATTTAATTATTATATATTTTTATTTCTATTTAGT
47925286 TATTA-TTATTTAT
1 TATTATTTATTTAT
47925299 GAAGAAAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 7 0.12
54 47 0.81
55 4 0.07
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (54 bp):
TATTATTTATTTATATATCTATTTAATTATTATATATTTTTATTTCTATTTAGT
Found at i:47925255 original size:39 final size:42
Alignment explanation
Indices: 47925123--47925268 Score: 123
Period size: 39 Copynumber: 3.5 Consensus size: 42
47925113 TATAAATCTA
*
47925123 TATTTCTATATTATTTATTT-TATTATTCTATCTATTATTATATTATC
1 TATTT-TATATTATCTATTTATA-TA-T-TAT-TATTATT-TATTATC
*
47925170 TATTATTATATTATCTATTTATATATTATTATTATTT-TTATA
1 TATT-TTATATTATCTATTTATATATTATTATTATTTATTATC
47925212 TATTTT-TATT-TCTATTTAGT-TATTATTTATT-TTTATT-TC
1 TATTTTATATTATCTATTTA-TATATTA-TTATTATTTATTATC
47925251 TA-TTTA-ATTAT-TATTTAT
1 TATTTTATATTATCTATTTAT
47925269 TTTTATTTCT
Statistics
Matches: 89, Mismatches: 3, Indels: 24
0.77 0.03 0.21
Matches are distributed among these distances:
37 1 0.01
38 12 0.13
39 20 0.22
40 12 0.13
41 2 0.02
42 8 0.09
43 1 0.01
44 7 0.08
45 3 0.03
46 1 0.01
47 19 0.21
48 3 0.03
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (42 bp):
TATTTTATATTATCTATTTATATATTATTATTATTTATTATC
Found at i:47925267 original size:11 final size:10
Alignment explanation
Indices: 47925131--47925298 Score: 99
Period size: 10 Copynumber: 17.0 Consensus size: 10
47925121 TATATTTCTA
47925131 TATTATTTAT
1 TATTATTTAT
47925141 T-TTA-TTAT
1 TATTATTTAT
* *
47925149 T-CTATCTAT
1 TATTATTTAT
47925158 TATTATATTAT
1 TATTAT-TTAT
47925169 CTATTATTATAT
1 -TATTATT-TAT
47925181 TATCTATTTAT
1 TAT-TATTTAT
47925192 ATATTA-TTAT
1 -TATTATTTAT
47925202 TATT-TTTAT
1 TATTATTTAT
47925211 ATATT-TTTAT
1 -TATTATTTAT
47925221 T-TCTATTTAGT
1 TAT-TATTTA-T
47925232 TATTATTTAT
1 TATTATTTAT
* *
47925242 TTTTATTT-C
1 TATTATTTAT
*
47925251 TA-T-TTAAT
1 TATTATTTAT
47925259 TATTATTTAT
1 TATTATTTAT
* *
47925269 TTTTATTT-C
1 TATTATTTAT
47925278 TATT-TGGTTAT
1 TATTAT--TTAT
47925289 TATTATTTAT
1 TATTATTTAT
47925299 GAAGAAAATG
Statistics
Matches: 124, Mismatches: 14, Indels: 40
0.70 0.08 0.22
Matches are distributed among these distances:
7 2 0.02
8 12 0.10
9 22 0.18
10 46 0.37
11 24 0.19
12 18 0.15
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (10 bp):
TATTATTTAT
Found at i:47925275 original size:21 final size:20
Alignment explanation
Indices: 47925131--47925276 Score: 91
Period size: 23 Copynumber: 6.9 Consensus size: 20
47925121 TATATTTCTA
47925131 TATTATTTATTTTATTATTCTAT
1 TATTATTTA-TTT-TTATT-TAT
* *
47925154 CTATTA-TTA-TATTATCTAT
1 -TATTATTTATTTTTATTTAT
*
47925173 TATTATATTATCTATTTATATAT
1 TATTAT-TTAT-T-TTTATTTAT
*
47925196 TATTA-TTATTTTTATATAT
1 TATTATTTATTTTTATTTAT
* * * *
47925215 TTTTATTTCTATTTAGTTAT
1 TATTATTTATTTTTATTTAT
*
47925235 TATTTATTTTTATTTCTATTTAAT
1 TA-TTA--TTTATTTTTATTT-AT
47925259 TATTATTTATTTTTATTT
1 TATTATTTATTTTTATTT
47925277 CTATTTGGTT
Statistics
Matches: 97, Mismatches: 15, Indels: 23
0.72 0.11 0.17
Matches are distributed among these distances:
18 5 0.05
19 16 0.16
20 19 0.20
21 20 0.21
22 1 0.01
23 27 0.28
24 9 0.09
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (20 bp):
TATTATTTATTTTTATTTAT
Found at i:47925276 original size:6 final size:6
Alignment explanation
Indices: 47925195--47925296 Score: 64
Period size: 6 Copynumber: 16.0 Consensus size: 6
47925185 TATTTATATA
* * *
47925195 TTATTA TTATTT TTA--T ATATTT TTATTT CTATTT AGTTATTAT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT --TTATT-T TTATTT
* * *
47925244 TTATTT CTATTT AATTATTAT TTATTT TTATTT CTATTT GGTTATTA TTATTT
1 TTATTT TTATTT --TTATT-T TTATTT TTATTT TTATTT --TTATTT TTATTT
47925297 ATGAAGAAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
4 3 0.04
6 48 0.64
7 10 0.13
8 12 0.16
9 2 0.03
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (6 bp):
TTATTT
Found at i:47932355 original size:12 final size:12
Alignment explanation
Indices: 47932338--47932362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47932328 CAGAGGCTAT
47932338 TAACAATATTTA
1 TAACAATATTTA
47932350 TAACAATATTTA
1 TAACAATATTTA
47932362 T
1 T
47932363 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:47932469 original size:21 final size:21
Alignment explanation
Indices: 47932440--47932499 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
47932430 ACGCCTACGA
47932440 AAAGA-TCGCTTGGATTTAAG
1 AAAGAGTCGCTTGGATTTAAG
47932460 AAAGAGTCGCTTGGATTTAAG
1 AAAGAGTCGCTTGGATTTAAG
47932481 AAAGAGTCGCTTGGATTTA
1 AAAGAGTCGCTTGGATTTA
47932500 TCCATGATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
20 5 0.13
21 34 0.87
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (21 bp):
AAAGAGTCGCTTGGATTTAAG
Found at i:47933317 original size:6 final size:6
Alignment explanation
Indices: 47933306--47933384 Score: 57
Period size: 5 Copynumber: 14.2 Consensus size: 6
47933296 GGGATCACTA
*
47933306 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACT-AT TCTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* *
47933349 A-GAAT A-GAAT ACTAAT -CTAAT ACTCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT A--CTAAT ACTAAT A
47933385 GAACAGAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
4 3 0.05
5 26 0.43
6 26 0.43
8 6 0.10
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (6 bp):
ACTAAT
Found at i:47933328 original size:20 final size:21
Alignment explanation
Indices: 47933302--47933347 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
47933292 AGCCGGGATC
47933302 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
*
47933323 -CTAACTAATACTATTCTAAT
1 ACTAACTAATACTAATCTAAT
47933343 ACTAA
1 ACTAA
47933348 TAGAATAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.35
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:47933659 original size:14 final size:14
Alignment explanation
Indices: 47933640--47933668 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47933630 ACAGATGGAT
47933640 TCGTATAATTCTTA
1 TCGTATAATTCTTA
47933654 TCGTATAATTCTTA
1 TCGTATAATTCTTA
47933668 T
1 T
47933669 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:47935181 original size:13 final size:13
Alignment explanation
Indices: 47935163--47935190 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
47935153 GTTATTCATA
47935163 ATTAATATGAATT
1 ATTAATATGAATT
47935176 ATTAATATGAATT
1 ATTAATATGAATT
47935189 AT
1 AT
47935191 AGACTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:47935388 original size:21 final size:21
Alignment explanation
Indices: 47935358--47935401 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
47935348 AAATTAAAAT
*
47935358 TTTATATATATA-TTTAT-TA
1 TTTATCTATATATTTTATATA
47935377 TTTATCTATATATTTTATATA
1 TTTATCTATATATTTTATATA
47935398 TTTA
1 TTTA
47935402 ATAGTACATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 5 0.23
21 6 0.27
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTATCTATATATTTTATATA
Done.