Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 150 of 290
Found at i:47937822 original size:40 final size:40
Alignment explanation
Indices: 47937762--47937982 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
47937752 TATTCGAATG
*
47937762 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
47937802 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
47937842 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
47937882 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
47937922 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
47937962 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
47937983 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 141 0.89
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:47938250 original size:22 final size:22
Alignment explanation
Indices: 47938210--47938251 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47938200 GAATGTGCAT
*
47938210 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
47938232 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
47938252 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:47941292 original size:40 final size:40
Alignment explanation
Indices: 47941211--47941429 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
47941201 AAACCAAGTA
* *
47941211 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
47941250 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
47941290 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
47941330 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
47941370 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAC-AAATG
47941411 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
47941430 TTATCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
39 15 0.09
40 127 0.77
41 24 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:47945080 original size:47 final size:47
Alignment explanation
Indices: 47944996--47945137 Score: 216
Period size: 47 Copynumber: 3.0 Consensus size: 47
47944986 GTTGAATTTA
*
47944996 AAGCTTGTTAAA-TTGCTT-TTAATATTTCCGAATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTG-TTCTTAATATTTCCGGATAAGTTACTTAGTT
*
47945042 AAGCTTGTTAAATTTGTTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGTTCTTAATATTTCCGGATAAGTTACTTAGTT
** *
47945089 AAGCTTGTTAAATTTGCCCTTAATATTTTCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGTTCTTAATATTTCCGGATAAGTTACTTAGTT
47945136 AA
1 AA
47945138 AGAAAATTCA
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
46 14 0.16
47 74 0.84
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGTTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:47946015 original size:45 final size:44
Alignment explanation
Indices: 47945951--47946080 Score: 188
Period size: 45 Copynumber: 2.9 Consensus size: 44
47945941 CGCACAGTAT
*
47945951 TATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCTGGTGAGATAC
1 TATTC-GGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
47945996 TATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGG-CCTTTAAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
47946041 TATTAGGGCTTTCAAGCCTCGCAGGCTATAATGCCGGTGA
1 TATTCGGCCTTT-AAGCCTAGCAGGCTATAATGCCGGTGA
47946081 AATGATATCA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
44 6 0.08
45 71 0.92
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (44 bp):
TATTCGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:47952317 original size:48 final size:48
Alignment explanation
Indices: 47952197--47952344 Score: 210
Period size: 48 Copynumber: 3.1 Consensus size: 48
47952187 TAAGTTGAAT
*
47952197 TTAAAGCTTGTTAAA-TTACTCTTAATATTTCCGGATAAGTTACTGAG
1 TTAAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTTAG
* * *
47952244 TT-AAGCTTGTTAAATTTGCTCTTAATATTTCCAGACAAGTTACTTAG
1 TTAAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTTAG
* * * *
47952291 TTAAAGCTTGTTAAATTTTCCCTTAATATTTCTGGATAAGTTTCTTAG
1 TTAAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTTAG
47952339 TTAAAG
1 TTAAAG
47952345 AAAATTAAAG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
46 12 0.13
47 32 0.36
48 45 0.51
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (48 bp):
TTAAAGCTTGTTAAATTTACTCTTAATATTTCCGGATAAGTTACTTAG
Found at i:47953213 original size:45 final size:44
Alignment explanation
Indices: 47953157--47953320 Score: 199
Period size: 45 Copynumber: 3.7 Consensus size: 44
47953147 ATTATTCGTT
*
47953157 CCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATACTATTCGG
1 CCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
* *
47953201 ACCTTTGAGCCTAGCAGGATATAATGCCGGTGAGATACTATTTGG
1 -CCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
* * **
47953246 GCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGTTA-TCAGG
1 CCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTC-GG
* *
47953291 -CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 CCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
47953321 ATGAATTAAG
Statistics
Matches: 106, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
42 11 0.10
43 14 0.13
44 8 0.08
45 73 0.69
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
CCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGG
Found at i:47959474 original size:47 final size:47
Alignment explanation
Indices: 47959402--47959543 Score: 232
Period size: 47 Copynumber: 3.0 Consensus size: 47
47959392 GTTGAATTTA
47959402 AAGCTTGTTAAA-TTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* *
47959448 AAGCTTGTTAAATTTGCTCTTAATATTTCCAGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* * *
47959495 AAGCTTGTTAAATTTGCCCTTAATATTTCTGGATAAGTTTCTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
47959542 AA
1 AA
47959544 AGAAAATTCT
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 12 0.14
47 76 0.86
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:47960413 original size:45 final size:45
Alignment explanation
Indices: 47960349--47960507 Score: 209
Period size: 45 Copynumber: 3.6 Consensus size: 45
47960339 CGCATAGTAT
* *
47960349 TATTCGGGCCTTTGAGCCTAGAAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAC
*
47960394 TATTCGGGCCTTTTAGCCTAGCAGGCTATAATGCCAGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAC
* *
47960439 TATTCGGG-CTTTCGAGCCTAGCATGCTATAATGCCAGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCAGTGAGAT-AC
* *
47960484 TA-TCAGG-CTTCGAGCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
47960508 GAAATACCGG
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
43 12 0.12
44 11 0.11
45 79 0.77
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAC
Found at i:47962583 original size:46 final size:46
Alignment explanation
Indices: 47962516--47962691 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
47962506 TGTAACCTGC
*
47962516 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGACGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGGAT
* * * * * *
47962562 CCATAAGGGAACTCAGACTCAACTCAACGAGCTCGGATG-CCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTC-GGAT
* *** * * *
47962608 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGGAT
* *
47962655 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
47962692 TGCCCAAACA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
45 1 0.01
46 68 0.67
47 32 0.31
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGGAT
Found at i:47962634 original size:93 final size:93
Alignment explanation
Indices: 47962524--47962695 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
47962514 GCCCATAAGT
* * *
47962524 GAACTCGGACTCAACTCAATGAGCTCGGACGTTCGGATCCATAAGGGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCAGACTCAACTCAA
47962589 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
47962617 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCAGACTCAACTCAA
* *
47962682 TGAGTTCGGATGCC
66 CGAGCTCGGATGCC
47962696 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGGGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:47964197 original size:17 final size:17
Alignment explanation
Indices: 47964175--47964210 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
47964165 AACATAGCCT
47964175 TAGCACAAATAGCCATA
1 TAGCACAAATAGCCATA
47964192 TAGCACAAATAGCCATA
1 TAGCACAAATAGCCATA
47964209 TA
1 TA
47964211 TGCCAACTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.19
Consensus pattern (17 bp):
TAGCACAAATAGCCATA
Found at i:47964832 original size:39 final size:39
Alignment explanation
Indices: 47964730--47964833 Score: 120
Period size: 38 Copynumber: 2.7 Consensus size: 39
47964720 GTTACCGAAA
** * * *
47964730 GTGCAAATCAAGGGTATTGAAGTACAACAGGGGCACGTAT
1 GTGC-AATCAAGGGTACCGAAGTACAACAGAGGAAAGTAT
* *
47964770 GTGCATTC-AGGGTACCAAAGTACAACAGAGGAAAGTAT
1 GTGCAATCAAGGGTACCGAAGTACAACAGAGGAAAGTAT
*
47964808 GTGCAATCAAGGGTACCGAGGTACAA
1 GTGCAATCAAGGGTACCGAAGTACAA
47964834 AAAGGGCACG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
38 31 0.58
39 18 0.34
40 4 0.08
ACGTcount: A:0.37, C:0.16, G:0.29, T:0.18
Consensus pattern (39 bp):
GTGCAATCAAGGGTACCGAAGTACAACAGAGGAAAGTAT
Found at i:47964847 original size:39 final size:39
Alignment explanation
Indices: 47964730--47964892 Score: 116
Period size: 39 Copynumber: 4.2 Consensus size: 39
47964720 GTTACCGAAA
** * *
47964730 GTGCAAATCAAGGGTATTGAAGTACAACAGGGGCACGTAT
1 GTGC-AATCAAGGGTACCGAAGTACAAAAAGGGCACGTAT
* * * * *
47964770 GTGCATTC-AGGGTACCAAAGTAC-AACAGAGGAAAGTAT
1 GTGCAATCAAGGGTACCGAAGTACAAAAAG-GGCACGTAT
*
47964808 GTGCAATCAAGGGTACCGAGGTACAAAAAGGGCACGTAT
1 GTGCAATCAAGGGTACCGAAGTACAAAAAGGGCACGTAT
* ** * * * * *
47964847 GTAC-ATTTAGGGATATCGAAGTACAACAGGGGTATGTAT
1 GTGCAATCAAGGG-TACCGAAGTACAAAAAGGGCACGTAT
47964886 GTGCAAT
1 GTGCAAT
47964893 TAGGGCCAAC
Statistics
Matches: 93, Mismatches: 25, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
37 2 0.02
38 32 0.34
39 49 0.53
40 10 0.11
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.21
Consensus pattern (39 bp):
GTGCAATCAAGGGTACCGAAGTACAAAAAGGGCACGTAT
Found at i:47964896 original size:39 final size:38
Alignment explanation
Indices: 47964748--47964949 Score: 156
Period size: 39 Copynumber: 5.2 Consensus size: 38
47964738 CAAGGGTATT
47964748 GAAGTACAACAGGGGCACGTATGTGC-ATTCAGGGTACC
1 GAAGTACAACAGGGGCACGTATGTGCAATT-AGGGTACC
* * * * *
47964786 AAAGTACAACAGAGGAAAGTATGTGCAATCAAGGGTACC
1 GAAGTACAACAGGGGCACGTATGTGCAAT-TAGGGTACC
* * * * * *
47964825 GAGGTACAAAAAGGGCACGTATGTACATTTAGGGATATC
1 GAAGTACAACAGGGGCACGTATGTGCAATTAGGG-TACC
* * * *
47964864 GAAGTACAACAGGGGTATGTATGTGCAATTAGGGCCAAC
1 GAAGTACAACAGGGGCACGTATGTGCAATTAGGG-TACC
* * * * *
47964903 GAAGTACAACA-GTGCATGTGTGTACATTTAGAGGTACC
1 GAAGTACAACAGGGGCACGTATGTGCAATTAG-GGTACC
*
47964941 AAAGTACAA
1 GAAGTACAA
47964950 AAATTAACTA
Statistics
Matches: 126, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
38 51 0.40
39 75 0.60
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (38 bp):
GAAGTACAACAGGGGCACGTATGTGCAATTAGGGTACC
Found at i:47986096 original size:12 final size:12
Alignment explanation
Indices: 47986081--47986125 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
47986071 GTAGGATATG
* *
47986081 ATTATGTATCTG
1 ATTATGCATCTA
47986093 ATTATGCATCTA
1 ATTATGCATCTA
*
47986105 ATTTTGCATCTA
1 ATTATGCATCTA
47986117 ATTATGCAT
1 ATTATGCAT
47986126 TTGGAGATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (12 bp):
ATTATGCATCTA
Found at i:47990432 original size:77 final size:79
Alignment explanation
Indices: 47990333--47990482 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 79
47990323 TATACCCTAT
47990333 AGGGGCATTACGAACATTTTACCTATAAGGGCATTACGGTCA-TTTACCCTAC-AGGGCATTAC-
1 AGGGGCATTACGAACATTTTACCTATAAGGGCATTACGGTCATTTTACCCTACAAGGGCATTACA
47990395 GATCATTTTGACTAC
66 G-TCATTTTGACTAC
* * *
47990410 AGGGGCATTATGATCATTTTACCTATAGGGGCATTACGGTCATTTTACCCTACAAGGGCATTACA
1 AGGGGCATTACGAACATTTTACCTATAAGGGCATTACGGTCATTTTACCCTACAAGGGCATTACA
47990475 GTCATTTT
66 GTCATTTT
47990483 ACCTATTTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
77 39 0.58
78 10 0.15
79 17 0.25
80 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (79 bp):
AGGGGCATTACGAACATTTTACCTATAAGGGCATTACGGTCATTTTACCCTACAAGGGCATTACA
GTCATTTTGACTAC
Found at i:47990482 original size:27 final size:27
Alignment explanation
Indices: 47990281--47990485 Score: 179
Period size: 26 Copynumber: 7.8 Consensus size: 27
47990271 TTGCCCTTTG
* ** * * *
47990281 GGGCATAACGGTCATTTCGCCTTATAG
1 GGGCATTACGGTCATTTTACCCTACAA
* * * *
47990308 GGGCATTATGGTCATTATACCCTATAG
1 GGGCATTACGGTCATTTTACCCTACAA
** *
47990335 GGGCATTACGAACATTTTA-CCTATAA
1 GGGCATTACGGTCATTTTACCCTACAA
47990361 GGGCATTACGGTCA-TTTACCCTAC-A
1 GGGCATTACGGTCATTTTACCCTACAA
* *
47990386 GGGCATTACGATCATTTTGA--CTACAG
1 GGGCATTACGGTCATTTT-ACCCTACAA
* * * *
47990412 GGGCATTATGATCATTTTA-CCTATAG
1 GGGCATTACGGTCATTTTACCCTACAA
47990438 GGGCATTACGGTCATTTTACCCTACAA
1 GGGCATTACGGTCATTTTACCCTACAA
*
47990465 GGGCATTACAGTCATTTTACC
1 GGGCATTACGGTCATTTTACC
47990486 TATTTTAGGG
Statistics
Matches: 149, Mismatches: 23, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
25 23 0.15
26 64 0.43
27 62 0.42
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.32
Consensus pattern (27 bp):
GGGCATTACGGTCATTTTACCCTACAA
Found at i:48002181 original size:39 final size:39
Alignment explanation
Indices: 48002128--48002248 Score: 172
Period size: 39 Copynumber: 3.1 Consensus size: 39
48002118 AATTATGTTA
48002128 CCAGCAC-AAGGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAA-GCCTGCGGGACTTTAGCCCGGATACATTT
* *
48002167 CCAGCATGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * * *
48002206 CCAGCACGAAACCTGTGGGTCTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
48002245 CCAG
1 CCAG
48002249 TGTCTTGCTT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 71 0.97
40 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:48025876 original size:46 final size:46
Alignment explanation
Indices: 48025826--48026001 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
48025816 TGGTTGAGCA
48025826 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48025872 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
48025917 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48025965 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48026002 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48025982 original size:93 final size:93
Alignment explanation
Indices: 48025823--48025994 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
48025813 GGATGGTTGA
* *
48025823 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48025888 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
48025916 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48025981 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48025995 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48029041 original size:79 final size:82
Alignment explanation
Indices: 48028930--48029114 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
48028920 GCTACTCGTT
* * *
48028930 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
48028993 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
48029010 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
48029073 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
48029090 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48029115 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:48029114 original size:40 final size:40
Alignment explanation
Indices: 48028911--48029114 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
48028901 CGGAATTTAA
** *
48028911 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
48028951 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48028991 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48029030 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48029070 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48029110 CCGGA
1 CCGGA
48029115 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48036124 original size:46 final size:46
Alignment explanation
Indices: 48036074--48036202 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
48036064 TGGTTGAGCA
* *
48036074 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
48036120 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* ** * *
48036166 CCCGTGCTCGTTGAGTTGTGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48036203 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:48038033 original size:26 final size:25
Alignment explanation
Indices: 48037997--48038103 Score: 178
Period size: 26 Copynumber: 4.2 Consensus size: 25
48037987 TGAAATGCCA
48037997 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCT-AACCATT
48038023 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
*
48038048 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAA-CCATT
48038074 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAAC-CATT
48038100 ATCA
1 ATCA
48038104 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
25 27 0.35
26 50 0.65
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:48038062 original size:51 final size:52
Alignment explanation
Indices: 48037997--48038103 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
48037987 TGAAATGCCA
48037997 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAAC-CATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACTCATT
* *
48038048 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACTCATT
48038100 ATCA
1 ATCA
48038104 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 45 0.85
52 8 0.15
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACTCATT
Found at i:48049004 original size:30 final size:30
Alignment explanation
Indices: 48048957--48049015 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
48048947 TTTACAAGCC
*
48048957 TAGGGGCTAAATCGTAAATATGTGAAAGTT
1 TAGGGGCTAAATCGTAAATATGTAAAAGTT
* *
48048987 TAGGGGTTAAAAT-GTAAATTTGTAAAAGT
1 TAGGGGCT-AAATCGTAAATATGTAAAAGT
48049016 ATGATTTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCTAAATCGTAAATATGTAAAAGTT
Found at i:48049408 original size:43 final size:44
Alignment explanation
Indices: 48049350--48049482 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 44
48049340 AGATATGTGG
* *
48049350 CATCCGAACTTGTTGAAAGGTCCGAGTTCATTATGGATGCA-AC
1 CATCCGAGCTTGTTGAAAGGTCCGAGTTCATTATGGATGCATAA
* * * *
48049393 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATGGTGGATGCGATTCATGTAA
1 CATCCGAGCTTGTTGAAAGGTCCGAGTTCAT--T--ATG-GATGCA--TAA
48049444 CATCCGAGCTTGTT-AAGAGGTCCGAGTTCATTATGGATG
1 CATCCGAGCTTGTTGAA-AGGTCCGAGTTCATTATGGATG
48049483 TGTTACATGT
Statistics
Matches: 71, Mismatches: 10, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
43 27 0.38
45 1 0.01
46 3 0.04
47 6 0.08
48 5 0.07
49 1 0.01
50 1 0.01
51 27 0.38
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (44 bp):
CATCCGAGCTTGTTGAAAGGTCCGAGTTCATTATGGATGCATAA
Found at i:48061298 original size:38 final size:38
Alignment explanation
Indices: 48061237--48061349 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
48061227 ATTTGATGTG
* *
48061237 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
48061277 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
48061315 TAGCCGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
48061350 TTATATTCGG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
38 52 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:48061350 original size:38 final size:38
Alignment explanation
Indices: 48061253--48061354 Score: 141
Period size: 38 Copynumber: 2.7 Consensus size: 38
48061243 GGCTTAAAGA
* ** * *
48061253 CCCGCAGGCTTCGTGTTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATAGCCGGGATAAAT
48061291 CCCGCAGGCTTCGTGCTGGTATTATAGCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATAGCCGGGATAAAT
* *
48061329 CCCGCAGGCCTAGTGCTGGTATTATA
1 CCCGCAGGCTTCGTGCTGGTATTATA
48061355 TTCGGGCCTT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATAGCCGGGATAAAT
Found at i:48061414 original size:43 final size:43
Alignment explanation
Indices: 48061353--48061477 Score: 196
Period size: 43 Copynumber: 2.9 Consensus size: 43
48061343 GCTGGTATTA
*
48061353 TATTCGGGCCTTCGTGCCTAGCAAGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
*
48061396 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
** * *
48061439 TATTCTAGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGA
48061478 AATGATATGT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.14, C:0.26, G:0.31, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:48064882 original size:18 final size:18
Alignment explanation
Indices: 48064859--48064896 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
48064849 GTGGCATCCA
48064859 AGCTCGTTGAGAGGTCCG
1 AGCTCGTTGAGAGGTCCG
48064877 AGCTCGTTGAGAGGTCCG
1 AGCTCGTTGAGAGGTCCG
48064895 AG
1 AG
48064897 TTCATGGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.21, G:0.39, T:0.21
Consensus pattern (18 bp):
AGCTCGTTGAGAGGTCCG
Found at i:48074307 original size:46 final size:44
Alignment explanation
Indices: 48074206--48074421 Score: 177
Period size: 46 Copynumber: 4.7 Consensus size: 44
48074196 ATATCTGTGT
48074206 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACACATCTCGTAGC
* * * *
48074252 AGATGCATGTCCCAAACATGTCTTACACTGACTTACGTCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAAC--ACATCTCGTA-GC
* * *
48074298 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTC-AATGT
1 CGATGCATGTCCCAGACATGTCTTACACTA--ACACATCTCGTA-GC
* * * * * *
48074344 TGATGCCATGTACTAGACATGGTCTTACACTAACTC-TCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAACACATC-T--CGTAGC
48074392 CGATGCATGTCCCAGACATGTCTTACACTA
1 CGATGCATGTCCCAGACATGTCTTACACTA
48074422 GCTCACAATA
Statistics
Matches: 137, Mismatches: 21, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 12 0.09
45 16 0.12
46 67 0.49
47 24 0.18
48 18 0.13
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAACACATCTCGTAGC
Found at i:48074372 original size:94 final size:92
Alignment explanation
Indices: 48074206--48074428 Score: 240
Period size: 94 Copynumber: 2.4 Consensus size: 92
48074196 ATATCTGTGT
* *
48074206 CGATGCCATGTCCCAGACATGGTCTTACACTA--ACACATCTCGTAGCAGATGCATGTCCCAAAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCAGATGCATGTACCAAAC
* * *
48074269 ATGTCTTACACTGACT-TACGT-CTCGAGGC
64 ATGTCTTACACTAACTCT-CATAAT-GAGGC
* ** * *
48074298 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCA-ATGTTGATGCCATGTACTAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCAGATG-CATGTACCAAAC
*
48074362 ATGGTCTTACACTAACTCTCATAATGTGGC
64 AT-GTCTTACACTAACTCTCATAATGAGGC
*
48074392 CGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACA
48074429 ATAACCCATA
Statistics
Matches: 111, Mismatches: 13, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
90 11 0.10
91 15 0.14
92 18 0.16
93 11 0.10
94 54 0.49
95 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCAGATGCATGTACCAAACAT
GTCTTACACTAACTCTCATAATGAGGC
Found at i:48074415 original size:140 final size:141
Alignment explanation
Indices: 48074157--48074420 Score: 338
Period size: 140 Copynumber: 1.9 Consensus size: 141
48074147 GTCGGGTACT
** ** *
48074157 GATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGCATATCTGTGTCGATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCACTA-CATATCAATGTCGATGCCATGTACCAG
48074222 ACATGGTCTTACACTAACACATCTCGTAGCAGATGCATGTCCCAAACATGTCTTACACTGACTTA
65 ACATGGTCTTACACTAACACATCTCGTAGCAGATGCATGTCCCAAACATGTCTTACACTGACTTA
48074287 CGTCTCGAGGCC
130 CGTCTCGAGGCC
* * * *
48074299 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CATCTCAATGTTGATGCCATGTACTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCACTACATATCAATGTCGATGCCATGTACCAGA
* * * * *
48074361 CATGGTCTTACACTAACTC-TCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACT
66 CATGGTCTTACACTAACACATC-T--CGTAGCAGATGCATGTCCCAAACATGTCTTACACT
48074421 AGCTCACAAT
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
137 2 0.02
138 41 0.39
140 44 0.42
141 14 0.13
142 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGCACTACATATCAATGTCGATGCCATGTACCAGA
CATGGTCTTACACTAACACATCTCGTAGCAGATGCATGTCCCAAACATGTCTTACACTGACTTAC
GTCTCGAGGCC
Found at i:48075332 original size:31 final size:31
Alignment explanation
Indices: 48075294--48075356 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
48075284 ATCATTATAG
*
48075294 TACACCTTATGTCATTAACATTACCTAATGT
1 TACACCTTATGTCATCAACATTACCTAATGT
48075325 TACACCTTATGTCATCAACATTACCTAATGT
1 TACACCTTATGTCATCAACATTACCTAATGT
48075356 T
1 T
48075357 GACTTTACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (31 bp):
TACACCTTATGTCATCAACATTACCTAATGT
Found at i:48080195 original size:25 final size:25
Alignment explanation
Indices: 48080147--48080195 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
48080137 ATATCCAATT
* * *
48080147 AATTGGAAATGGAATGTTAATTGTG
1 AATTGAAAATGAAATGGTAATTGTG
*
48080172 AATTGAAAATGAAATGGTAGTTGT
1 AATTGAAAATGAAATGGTAATTGT
48080196 TGGTGCTTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.35
Consensus pattern (25 bp):
AATTGAAAATGAAATGGTAATTGTG
Found at i:48082123 original size:47 final size:47
Alignment explanation
Indices: 48082019--48082113 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
48082009 ACACGTGAAG
48082019 GGAATAATGAGAGTGATAGCTTTATGCTTCACTTTTAAGAAATCTTT
1 GGAATAATGAGAGTGATAGCTTTATGCTTCACTTTTAAGAAATCTTT
**
48082066 GGAATAATGAGAGTGATAGCTTTATGCTTCACTTTTGGGAAATCTTT
1 GGAATAATGAGAGTGATAGCTTTATGCTTCACTTTTAAGAAATCTTT
48082113 G
1 G
48082114 ACTCTATGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (47 bp):
GGAATAATGAGAGTGATAGCTTTATGCTTCACTTTTAAGAAATCTTT
Found at i:48082288 original size:39 final size:39
Alignment explanation
Indices: 48082231--48082341 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
48082221 TTTTGACTGT
* * *
48082231 TGTGATATATACGAGTATTGTCATATATGCTTAAACGTTA
1 TGTGATA-ATATGAGTATTGTGATATATGCTTAAACATTA
* *
48082271 TGTGATAATATGAGTATTGTGATATAAGCTTAAATATTA
1 TGTGATAATATGAGTATTGTGATATATGCTTAAACATTA
* * *
48082310 TGTGATTATATGTGTAATGTGATATATGCTTA
1 TGTGATAATATGAGTATTGTGATATATGCTTA
48082342 CAAGTGAATA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
39 55 0.89
40 7 0.11
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.42
Consensus pattern (39 bp):
TGTGATAATATGAGTATTGTGATATATGCTTAAACATTA
Found at i:48087206 original size:19 final size:20
Alignment explanation
Indices: 48087168--48087206 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
48087158 TAATGTTTCC
*
48087168 CAATGGCTTTAAATCAACTA
1 CAATGGCTATAAATCAACTA
48087188 CAATGGCTATAAA-CAACTA
1 CAATGGCTATAAATCAACTA
48087207 TAAATTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.26
Consensus pattern (20 bp):
CAATGGCTATAAATCAACTA
Found at i:48087783 original size:22 final size:22
Alignment explanation
Indices: 48087758--48087800 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
48087748 AACTTAATTC
*
48087758 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
48087780 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
48087801 AGGAGTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:48091223 original size:57 final size:57
Alignment explanation
Indices: 48091162--48091280 Score: 141
Period size: 58 Copynumber: 2.1 Consensus size: 57
48091152 CACATACCTG
* *
48091162 TATATGCCCCACTAGACCC-AATTATATTCACATGGCCCATTAGGCCCAAATCACAAT
1 TATATGCCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCAC-AT
* ** * * **
48091219 TATATGGCCCTTTAGGCCCAAATCACATTTATGTGGCCCATTAGGCCCAAATCACAT
1 TATATGCCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACAT
48091276 TATAT
1 TATAT
48091281 TCATGCTTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 22 0.42
58 30 0.58
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (57 bp):
TATATGCCCCACTAGACCCAAATCACATTCACATGGCCCATTAGGCCCAAATCACAT
Found at i:48091226 original size:29 final size:29
Alignment explanation
Indices: 48091193--48091280 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
48091183 TTATATTCAC
48091193 ATGGCCCATTAGGCCCAAATCACAATTAT
1 ATGGCCCATTAGGCCCAAATCACAATTAT
* *
48091222 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACAATTAT
*
48091251 GTGGCCCATTAGGCCCAAATCAC-ATTAT
1 ATGGCCCATTAGGCCCAAATCACAATTAT
48091279 AT
1 AT
48091281 TCATGCTTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 5 0.09
29 48 0.91
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACAATTAT
Found at i:48091518 original size:16 final size:16
Alignment explanation
Indices: 48091497--48091534 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
48091487 CAAACTTTTT
*
48091497 GCTTTTCGACATTTCG
1 GCTTTTCAACATTTCG
48091513 GCTTTTCAACATTTCG
1 GCTTTTCAACATTTCG
48091529 GCTTTT
1 GCTTTT
48091535 ACCGATCTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.13, C:0.24, G:0.16, T:0.47
Consensus pattern (16 bp):
GCTTTTCAACATTTCG
Found at i:48093941 original size:38 final size:38
Alignment explanation
Indices: 48093894--48093967 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
48093884 CAAGTACTTG
48093894 AAAATGGTGATAACAAAGAAATCTCAATAAGTTATGAA
1 AAAATGGTGATAACAAAGAAATCTCAATAAGTTATGAA
*
48093932 AAAATGGTGATAACAAATAAATCTCAATAAGTTATG
1 AAAATGGTGATAACAAAGAAATCTCAATAAGTTATG
48093968 TTACTTCAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.51, C:0.08, G:0.15, T:0.26
Consensus pattern (38 bp):
AAAATGGTGATAACAAAGAAATCTCAATAAGTTATGAA
Found at i:48096998 original size:49 final size:49
Alignment explanation
Indices: 48096888--48097108 Score: 167
Period size: 49 Copynumber: 4.6 Consensus size: 49
48096878 CAAGATATAC
* * *
48096888 AAGCTAGTGTAAGACTTGTCTGGGACATGGCATC-AGCT---TGT-TGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGA
** ** *
48096932 GTGTAAGTGTAAGACCTGTCTAGGACATGGCATCAACAC-CGATAG-AT-A
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAAC-CTCGAT-GTATGA
* *
48096980 AGAGCCAGTGTAAGACCTGTCTGGGACACGGCATCAGCCTCGATGTATGA
1 A-AGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGA
* * * * *
48097030 AAGTCAGTGTCAA-ACCTGTCTGGGACATGGCATCGACTTTGATG--TGC
1 AAGCCAGTGT-AAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGA
* *
48097077 TAGCCAGTGTAAGACTATGTCTGGGACATGGC
1 AAGCCAGTGTAAGAC-CTGTCTGGGACATGGC
48097109 GTCAGCATTT
Statistics
Matches: 139, Mismatches: 24, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
44 28 0.20
45 1 0.01
46 3 0.02
47 12 0.09
48 19 0.14
49 72 0.52
50 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCAACCTCGATGTATGA
Found at i:48106990 original size:5 final size:5
Alignment explanation
Indices: 48106980--48107011 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
48106970 GATGATGTCA
48106980 TCTTT TCTTT TCTTT TCTTT TCTTT TCATTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT TC-TTT T
48107012 GTTCCATCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (5 bp):
TCTTT
Found at i:48113043 original size:26 final size:26
Alignment explanation
Indices: 48113011--48113063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
48113001 CGTGCGTTTC
* *
48113011 TTTCTCTTTTCTCCCTTTATTTTCTT
1 TTTCTCTTTTATCCATTTATTTTCTT
*
48113037 TTTCTCTTTTATCCATTTCTTTTCTT
1 TTTCTCTTTTATCCATTTATTTTCTT
48113063 T
1 T
48113064 CTCAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.70
Consensus pattern (26 bp):
TTTCTCTTTTATCCATTTATTTTCTT
Found at i:48114844 original size:43 final size:43
Alignment explanation
Indices: 48114719--48114882 Score: 165
Period size: 43 Copynumber: 3.8 Consensus size: 43
48114709 CGGAAAGGTC
* * * * *
48114719 ATACAATGCCAACGTCTCAGACATGGTTTTACATGT-AATCAA
1 ATACGATGCCAACATCCCAGACATGGTCTTACACGTAAATCAA
* *
48114761 ATATCGATGCC-ACTATCCCAGATAAGGTCTTACACG-AAATCAA
1 ATA-CGATGCCAAC-ATCCCAGACATGGTCTTACACGTAAATCAA
*
48114804 ATACGATGCCAACATCCCAGACGTGGTCTTACACGTAAATCATA
1 ATACGATGCCAACATCCCAGACATGGTCTTACACGTAAATCA-A
* * *
48114848 AGT-CGATGCCCACATCCTAGACGTGGTCTTACACG
1 A-TACGATGCCAACATCCCAGACATGGTCTTACACG
48114883 ATAACACATA
Statistics
Matches: 103, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
42 31 0.30
43 39 0.38
44 32 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
ATACGATGCCAACATCCCAGACATGGTCTTACACGTAAATCAA
Found at i:48123789 original size:27 final size:27
Alignment explanation
Indices: 48123758--48123813 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
48123748 GAAAAACTAA
*
48123758 TGGAACTTTTAGGCTTACCAAATTTAG
1 TGGAACTTTTAGGCTTAACAAATTTAG
48123785 TGGAACTTTTAGGCTTAACAAATTTAG
1 TGGAACTTTTAGGCTTAACAAATTTAG
48123812 TG
1 TG
48123814 AGAAAATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGAACTTTTAGGCTTAACAAATTTAG
Found at i:48131713 original size:23 final size:23
Alignment explanation
Indices: 48131667--48131731 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
48131657 TATATATTTT
* *
48131667 AATT-TTTTTATATTTTTCAT-A
1 AATTATTTTTAAATTTTTAATAA
48131688 AA-T-TTTTTAAATGATTTTAATAA
1 AATTATTTTTAAAT--TTTTAATAA
48131711 AATTATTTTTAAATTTTTAAT
1 AATTATTTTTAAATTTTTAAT
48131732 GAGTTTTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
20 9 0.24
21 2 0.05
22 6 0.16
23 10 0.27
24 1 0.03
25 9 0.24
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
AATTATTTTTAAATTTTTAATAA
Found at i:48135045 original size:23 final size:23
Alignment explanation
Indices: 48135017--48135062 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
48135007 TAAGGATTTC
48135017 TATATATATAATATGATTTAATT
1 TATATATATAATATGATTTAATT
48135040 TATATATATAATATGATTTAATT
1 TATATATATAATATGATTTAATT
48135063 GATGTCCTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
TATATATATAATATGATTTAATT
Found at i:48138984 original size:49 final size:49
Alignment explanation
Indices: 48138924--48139480 Score: 940
Period size: 49 Copynumber: 11.6 Consensus size: 49
48138914 GATAATTGTG
*
48138924 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48138971 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139018 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139067 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48139116 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48139163 ATGTGAAAGTGTATATATATGTCATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139212 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
48139263 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139310 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48139359 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48139408 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139455 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
48139481 TCCCGAAGGG
Statistics
Matches: 484, Mismatches: 14, Indels: 24
0.93 0.03 0.05
Matches are distributed among these distances:
47 196 0.40
48 3 0.01
49 237 0.49
51 48 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:48139031 original size:96 final size:97
Alignment explanation
Indices: 48138924--48139480 Score: 925
Period size: 96 Copynumber: 5.8 Consensus size: 97
48138914 GATAATTGTG
*
48138924 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTG-TATA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
*
48138986 TATGTGATAAGGCCGAATGGCCGATGTGATGA
66 TATGTGATAAGGCCTAATGGCCGATGTGATGA
48139018 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
48139083 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48139116 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
*
48139179 ATATGTCATAAGGCCTAATGGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139212 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TA
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATA
* *
48139276 TATATGTGATAAGGCCGAATGGCCAATGTGATGA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGA
48139310 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATAT
*
48139375 ATATGTGATAAGGCCTAATGGCCTATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
48139408 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
*
48139470 AATGTGATAAG
66 TATGTGATAAG
48139481 TCCCGAAGGG
Statistics
Matches: 441, Mismatches: 12, Indels: 20
0.93 0.03 0.04
Matches are distributed among these distances:
94 19 0.04
95 2 0.00
96 239 0.54
98 135 0.31
100 46 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:48139080 original size:145 final size:145
Alignment explanation
Indices: 48138924--48139480 Score: 1014
Period size: 145 Copynumber: 3.9 Consensus size: 145
48138914 GATAATTGTG
*
48138924 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
48138987 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
48139052 TGGCCGATGTGATGA
131 TGGCCGATGTGATGA
48139067 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
48139132 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTCATAAGGCCTAA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
48139197 TGGCCGATGTGATGA
131 TGGCCGATGTGATGA
48139212 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
48139277 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
48139342 AATGGCCGATGTGATGA
129 AATGGCCGATGTGATGA
*
48139359 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCTATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
48139424 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
48139481 TCCCGAAGGG
Statistics
Matches: 402, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
143 15 0.04
144 3 0.01
145 241 0.60
147 143 0.36
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGA
Found at i:48141834 original size:54 final size:54
Alignment explanation
Indices: 48141662--48141845 Score: 237
Period size: 55 Copynumber: 3.4 Consensus size: 54
48141652 CATTTCTTTA
* * * *
48141662 CATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGCGATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
** * * *
48141715 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATTCCATGTCTTGA
1 CATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* *
48141770 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
48141824 CATGGTCTTACATGATATCCTT
1 CATGGTCTTACATGATATCCTT
48141846 ATTTTACCAA
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 24 0.21
54 41 0.37
55 43 0.38
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:48141932 original size:47 final size:46
Alignment explanation
Indices: 48141824--48141945 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 46
48141814 CATGCCTTGG
* * *
48141824 CATGGTCTTACATGATATCCTTATTTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTAT-CTTGTCTTACCAAATGCCATGTTCCAAA
48141871 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATC-TTGTCTTACCAAATGCCATGTTCCAAA
48141918 CATGGTCTTACATGGTATTCTTGTCTTA
1 CATGGTCTTACATGGTA-TCTTGTCTTA
48141946 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
46 1 0.01
47 67 0.96
48 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (46 bp):
CATGGTCTTACATGGTATCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:48145128 original size:24 final size:24
Alignment explanation
Indices: 48145101--48145152 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
48145091 TTAGTAAGTC
*
48145101 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
48145125 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
48145149 AAAT
1 AAAT
48145153 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:48148463 original size:30 final size:30
Alignment explanation
Indices: 48148427--48148488 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
48148417 AAGACTTTGC
48148427 TGGCTTCTGGGCTGCAACACAACTCATGAA
1 TGGCTTCTGGGCTGCAACACAACTCATGAA
48148457 TGGCTTCTGGGCTGCAACACAACTCATGAA
1 TGGCTTCTGGGCTGCAACACAACTCATGAA
48148487 TG
1 TG
48148489 AGTTACGATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (30 bp):
TGGCTTCTGGGCTGCAACACAACTCATGAA
Found at i:48149149 original size:288 final size:288
Alignment explanation
Indices: 48148633--48149208 Score: 1080
Period size: 288 Copynumber: 2.0 Consensus size: 288
48148623 CCATAAGTGG
*
48148633 AAAGGAAGACAGCTAGAAAGCCTAAAGACTTATCTAAGTCTAAATGTCTCTTTTGCAGTAAGAAA
1 AAAGGAAGACAGCTAGAAAGCCTAAAGACTTATCTAAGTCTAAATGTCTCTTTTACAGTAAGAAA
48148698 GGGCATTTCAAGGCAAACAGTAAAGAATGGAAAGAATACTTGACCACCAAAGGCAGATATATGAA
66 GGGCATTTCAAGGCAAACAGTAAAGAATGGAAAGAATACTTGACCACCAAAGGCAGATATATGAA
48148763 ACTTTTAATGATAGAAGCTTGTTTAGTGAAGGATTCAATAGACCATTAGGCCATTGATTCGGGAG
131 ACTTTTAATGATAGAAGCTTGTTTAGTGAAGGATTCAATAGACCATTAGGCCATTGATTCGGGAG
48148828 CCACTAATTATGTATGCGTTTCTCTATAGGGGTTCGATGAGATGAAAGATTTTAAAGATAAGAGT
196 CCACTAATTATGTATGCGTTTCTCTATAGGGGTTCGATGAGATGAAAGATTTTAAAGATAAGAGT
*
48148893 CTATCGTTGCGGATTGGAAATGGGACAA
261 CTATCGTTGCGGACTGGAAATGGGACAA
* * * *
48148921 AAAGGAAGAGAGCTAGAAAGCCTAAAGATTTATCTAGGTCTAAATGTCTGTTTTACAGTAAGAAA
1 AAAGGAAGACAGCTAGAAAGCCTAAAGACTTATCTAAGTCTAAATGTCTCTTTTACAGTAAGAAA
*
48148986 GGGCATTTCAAGGCAAATAGTAAAGAATGGAAAGAATACTTGACCACCAAAGGCAGATATATGAA
66 GGGCATTTCAAGGCAAACAGTAAAGAATGGAAAGAATACTTGACCACCAAAGGCAGATATATGAA
48149051 ACTTTTAATGATAGAAGCTTGTTTAGTGAAGGATTCAATAGACCATTAGGCCATTGATTCGGGAG
131 ACTTTTAATGATAGAAGCTTGTTTAGTGAAGGATTCAATAGACCATTAGGCCATTGATTCGGGAG
*
48149116 CCACTAATTATGTATGTGTTTCTCTATAGGGGTTCGATGAGATGAAAGATTTTAAAGATAAGAGT
196 CCACTAATTATGTATGCGTTTCTCTATAGGGGTTCGATGAGATGAAAGATTTTAAAGATAAGAGT
48149181 CTATCGTTGCGGACTGGAAATGGGACAA
261 CTATCGTTGCGGACTGGAAATGGGACAA
48149209 CTGTGGTAGG
Statistics
Matches: 280, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
288 280 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (288 bp):
AAAGGAAGACAGCTAGAAAGCCTAAAGACTTATCTAAGTCTAAATGTCTCTTTTACAGTAAGAAA
GGGCATTTCAAGGCAAACAGTAAAGAATGGAAAGAATACTTGACCACCAAAGGCAGATATATGAA
ACTTTTAATGATAGAAGCTTGTTTAGTGAAGGATTCAATAGACCATTAGGCCATTGATTCGGGAG
CCACTAATTATGTATGCGTTTCTCTATAGGGGTTCGATGAGATGAAAGATTTTAAAGATAAGAGT
CTATCGTTGCGGACTGGAAATGGGACAA
Found at i:48152327 original size:27 final size:26
Alignment explanation
Indices: 48152292--48152375 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 26
48152282 TTAGCGAGTT
48152292 GGTTCGCCAGTGTGTTTGGCGAGCTGA
1 GGTTCGCCAGT-TGTTTGGCGAGCTGA
* *
48152319 GGTTCGCCAGTTTGTTTAGCGAGTTGA
1 GGTTCGCCAG-TTGTTTGGCGAGCTGA
* *
48152346 GGTTCACCAGTTGTTTGGGCGAGCTAA
1 GGTTCGCCAGTTGTTT-GGCGAGCTGA
48152373 GGT
1 GGT
48152376 GTAACACTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.12
27 42 0.86
28 1 0.02
ACGTcount: A:0.14, C:0.17, G:0.37, T:0.32
Consensus pattern (26 bp):
GGTTCGCCAGTTGTTTGGCGAGCTGA
Found at i:48152341 original size:52 final size:53
Alignment explanation
Indices: 48152275--48152375 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
48152265 TGGGTTTGAT
* *
48152275 AGTTGGTTTAGCGAGTT-GGTTCGCCAGTGTGTTT-GGCGAGCTGAGGTTCGCC
1 AGTTGGTTTAGCGAGTTAGGTTCACCAGT-TGTTTGGGCGAGCTAAGGTTCGCC
*
48152327 AGTTTGTTTAGCGAGTTGAGGTTCACCAGTTGTTTGGGCGAGCTAAGGT
1 AGTTGGTTTAGCGAGTT-AGGTTCACCAGTTGTTTGGGCGAGCTAAGGT
48152376 GTAACACTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
52 16 0.37
53 5 0.12
54 22 0.51
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.34
Consensus pattern (53 bp):
AGTTGGTTTAGCGAGTTAGGTTCACCAGTTGTTTGGGCGAGCTAAGGTTCGCC
Found at i:48166612 original size:2 final size:2
Alignment explanation
Indices: 48166605--48166631 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
48166595 GAAGAGAAAG
48166605 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
48166632 GAACACTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48174075 original size:27 final size:27
Alignment explanation
Indices: 48174044--48174512 Score: 233
Period size: 27 Copynumber: 17.4 Consensus size: 27
48174034 AGGGGCAAAA
* *
48174044 TGGTAATTTTACCCCACAAGGGTATCT
1 TGGTAATTTTACCCTACAAGGGTATTT
* * * * *
48174071 CGGTAATTCTAGCATACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTT
48174098 TGGT-ATTTCTACCCTACAAGGGTATTT
1 TGGTAATTT-TACCCTACAAGGGTATTT
* * * *
48174125 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTT
* * * *
48174152 CGGT-GTTTCTACCCAACAAGGGTACTT
1 TGGTAATTT-TACCCTACAAGGGTATTT
* * *
48174179 TGGTAACTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTT
** * *
48174206 CAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTT
*
48174233 TGGTAATTTTA-CATACCAAGGGTATTT
1 TGGTAATTTTACCCTA-CAAGGGTATTT
**
48174260 TGGTAATTTTA-CAAACCAAGGGTATTT
1 TGGTAATTTTACCCTA-CAAGGGTATTT
** *
48174287 TGGTAATTTTACAAGT-CGAGGGTATTT
1 TGGTAATTTTAC-CCTACAAGGGTATTT
** * ** *
48174314 CAGTAATTTCA-CAAATCAGGGGTATTT
1 TGGTAATTTTACCCTA-CAAGGGTATTT
***
48174341 TGGTAATTTTA-TAAACCAAGGGTATTT
1 TGGTAATTTTACCCTA-CAAGGGTATTT
** **
48174368 TGGTAATTTTACAAGT-TGAGGGTATTT
1 TGGTAATTTTAC-CCTACAAGGGTATTT
** * ** *
48174395 CAGTAATTTCA-CAAATCAGGGGTATTT
1 TGGTAATTTTACCCTA-CAAGGGTATTT
* **
48174422 TGGTAATTTCA-CAAACTAAGGGTATTT
1 TGGTAATTTTACCCTAC-AAGGGTATTT
*** *
48174449 TGGTAATTTTA-TAAACCAGAGGTATTT
1 TGGTAATTTTACCCTACAAG-GGTATTT
** *
48174476 TGGTAATTTTA-CAAACCAGGAGTATTT
1 TGGTAATTTTACCCTACAAGG-GTATTT
48174503 TGGTAATTTT
1 TGGTAATTTT
48174513 GCTAATCGAG
Statistics
Matches: 349, Mismatches: 77, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
26 12 0.03
27 333 0.95
28 4 0.01
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37
Consensus pattern (27 bp):
TGGTAATTTTACCCTACAAGGGTATTT
Found at i:48174266 original size:54 final size:53
Alignment explanation
Indices: 48174044--48174512 Score: 308
Period size: 54 Copynumber: 8.7 Consensus size: 53
48174034 AGGGGCAAAA
* * * * *
48174044 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTAGCATACAGGGGTATTT
1 TGGTAATTTTACCCAACAAGGGTATTTTGGTAATTTTA-CATACAAGGGTATTT
* * * * * *
48174098 TGGT-ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTT-TACCCAACAAGGGTATTTTGGTAATTTTA-CATACAAGGGTATTT
* * * * * * *
48174152 CGGT-GTTTCTACCCAACAAGGGTACTTTGGTAACTCTACCCTACAGGGGTATTT
1 TGGTAATTT-TACCCAACAAGGGTATTTTGGTAATTTTA-CATACAAGGGTATTT
** * * *
48174206 CAGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACATACCAAGGGTATTT
1 TGGTAATTTTACCCAACAAGGGTATTTTGGTAATTTTACATA-CAAGGGTATTT
* *
48174260 TGGTAATTTTA-CAAACCAAGGGTATTTTGGTAATTTTACA-AGTCGAGGGTATTT
1 TGGTAATTTTACCCAA-CAAGGGTATTTTGGTAATTTTACATA--CAAGGGTATTT
** * * * * *
48174314 CAGTAATTTCA-CAAATCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTT
1 TGGTAATTTTACCCAA-CAAGGGTATTTTGGTAATTTTACATA-CAAGGGTATTT
** ** * * *
48174368 TGGTAATTTTA--CAAGTTGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTT
1 TGGTAATTTTACCCAA--CAAGGGTATTTTGGTAATTTTACATA-CAAGGGTATTT
* * * * *
48174422 TGGTAATTTCA-CAAACTAAGGGTATTTTGGTAATTTTATAAACCAGAGGTATTT
1 TGGTAATTTTACCCAAC-AAGGGTATTTTGGTAATTTTACATACAAG-GGTATTT
* *
48174476 TGGTAATTTTA-CAAACCAGGAGTATTTTGGTAATTTT
1 TGGTAATTTTACCCAACAAGG-GTATTTTGGTAATTTT
48174513 GCTAATCGAG
Statistics
Matches: 341, Mismatches: 63, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
53 17 0.05
54 319 0.94
55 5 0.01
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37
Consensus pattern (53 bp):
TGGTAATTTTACCCAACAAGGGTATTTTGGTAATTTTACATACAAGGGTATTT
Found at i:48174283 original size:81 final size:81
Alignment explanation
Indices: 48174044--48174512 Score: 348
Period size: 81 Copynumber: 5.8 Consensus size: 81
48174034 AGGGGCAAAA
* * * * * *
48174044 TGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTAGCATA-CAGGGGTATTTTGGT-ATTTC
1 TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTTTA-CAAACCAAGGGTATTTTGGTAATTT-
**
48174107 TACCCTA-CAAGGGTATTT
64 TA-CAAACCAAGGGTATTT
* * * * * * * *
48174125 CGATAATTCTACCCTACAGGGGTATTTCGGT-GTTTCTACCCAA-CAAGGGTACTTTGGTAACTC
1 TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTT-TA-CAAACCAAGGGTATTTTGGTAATTT
** *
48174188 TACCCTA-CAGGGGTATTT
64 TA-CAAACCAAGGGTATTT
** * * *
48174206 CAGTAATTCTACCCTACAGGGGTATTTTGGTAATTTTACATACCAAGGGTATTTTGGTAATTTTA
1 TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTA
48174271 CAAACCAAGGGTATTT
66 CAAACCAAGGGTATTT
** * * * *
48174287 TGGTAATTTTACAAGT-C-GAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTT
1 TGGTAATTTTAC-CCTACAG-GGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
*
48174350 TATAAACCAAGGGTATTT
64 TACAAACCAAGGGTATTT
** ** * * * * *
48174368 TGGTAATTTTACAAGTTGA-GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTC
1 TGGTAATTTTAC-CCTACAGGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT
*
48174432 ACAAACTAAGGGTATTT
65 ACAAACCAAGGGTATTT
*** * *
48174449 TGGTAATTTTA-TAAACCAGAGGTATTTTGGTAATTTTACAAACC-AGGAGTATTTTGGTAATTT
1 TGGTAATTTTACCCTA-CAGGGGTATTTCGGTAATTTTACAAACCAAGG-GTATTTTGGTAATTT
48174512 T
64 T
48174513 GCTAATCGAG
Statistics
Matches: 320, Mismatches: 56, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
80 10 0.03
81 304 0.95
82 6 0.02
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37
Consensus pattern (81 bp):
TGGTAATTTTACCCTACAGGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTA
CAAACCAAGGGTATTT
Found at i:48174559 original size:81 final size:80
Alignment explanation
Indices: 48174225--48174565 Score: 353
Period size: 81 Copynumber: 4.2 Consensus size: 80
48174215 TACCCTACAG
* * * *
48174225 GGGTATTTTGGTAATTTTACATACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGG
1 GGGTA-TTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACTAACCAAGGGTATTTTGG
*
48174290 TAATTTTACAAGTCGA
65 TAATTTTACAAATCGA
* *
48174306 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTA-TAAACCAAGGGTATTTTG
1 GGGTATTT-GGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACT-AACCAAGGGTATTTTG
* *
48174370 GTAATTTTACAAGTTGA
64 GTAATTTTACAAATCGA
* * * * *
48174387 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACTAAGGGTATTTTGG
1 GGGTATTT-GGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACTAACCAAGGGTATTTTGG
* *
48174452 TAATTTTATAAA-CCA
65 TAATTTTACAAATCGA
* * * * * ****
48174467 GAGGTATTTTGGTAATTTTACAAACCAGGAGTATTTTGGTAATTTTGCTAATCGAGGGTAAAACG
1 G-GGTA-TTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACTAACCAAGGGTATTTTG
* * *
48174532 GTAATTCTATAAATTGA
64 GTAATTTTACAAATCGA
48174549 GGGTACTTTGGTAATTT
1 GGGTA-TTTGGTAATTT
48174566 GGTAAACTAA
Statistics
Matches: 222, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
80 5 0.02
81 212 0.95
82 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
GGGTATTTGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACTAACCAAGGGTATTTTGGT
AATTTTACAAATCGA
Found at i:48174680 original size:37 final size:37
Alignment explanation
Indices: 48174636--48174712 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
48174626 GCCCAAATGG
48174636 GCCTACACGCTCGTGTGGCCCTTTTAGCCCAAATCTA
1 GCCTACACGCTCGTGTGGCCCTTTTAGCCCAAATCTA
48174673 GCCTACACGCTCGTGTGGCCCTTTTAGCCCAAATCTA
1 GCCTACACGCTCGTGTGGCCCTTTTAGCCCAAATCTA
48174710 GCC
1 GCC
48174713 ACAGATATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.18, C:0.36, G:0.19, T:0.26
Consensus pattern (37 bp):
GCCTACACGCTCGTGTGGCCCTTTTAGCCCAAATCTA
Found at i:48178333 original size:47 final size:48
Alignment explanation
Indices: 48178260--48178531 Score: 233
Period size: 47 Copynumber: 5.8 Consensus size: 48
48178250 AGGGTAAGGT
*
48178260 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCAA
** * * *
48178307 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTC-AA
* * * * *
48178355 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTTGAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATC-TCAA
* *
48178401 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGC-CCTCATCTCAA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCAA
* * * ***
48178446 TGCCAATGCCATGTCCTAGACATGGTCTTACACTAGCTC-TCATAATGTG
1 -GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCAT-CTCAA
* * *
48178495 GCCGATG-CATGTCCCAGACAT-GTTTTACACTAGCTCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCA
48178532 CACAAGAATG
Statistics
Matches: 186, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.01
46 73 0.39
47 80 0.43
48 29 0.16
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATCATCTCAA
Found at i:48178523 original size:140 final size:141
Alignment explanation
Indices: 48178260--48178525 Score: 362
Period size: 140 Copynumber: 1.9 Consensus size: 141
48178250 AGGGTAAGGT
* ***
48178260 GCCGATGCCATGTCCTAGACACGGTCTTACACTGGCTCATATCTCAAGTTGATGCCATGTCCCAG
1 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCATATCTCAAGCCAATGCCATGTCCCAG
*
48178325 ACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
48178390 TACGTCTTGAG
131 TACGTCTTGAG
* * *
48178401 GCCGATG-CATGTCCTAGACA-TGTCTTACACTAGC-CCTCATCTCAATGCCAATGCCATGTCCT
1 GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCAT-ATCTCAA-GCCAATGCCATGTCCC
* * *
48178463 AGACATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTTTTACACT
64 AGACATGGTCTTACACTGA-CTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
48178526 AGCTCACACA
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 2 0.02
139 20 0.18
140 80 0.73
141 8 0.07
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (141 bp):
GCCGATGCCATGTCCTAGACACGGTCTTACACTAGCTCATATCTCAAGCCAATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TACGTCTTGAG
Found at i:48192603 original size:40 final size:40
Alignment explanation
Indices: 48192509--48192653 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
48192499 TACTCGAATG
*
48192509 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
48192550 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
48192590 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
48192630 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
48192654 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:48200568 original size:40 final size:40
Alignment explanation
Indices: 48200474--48200618 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
48200464 TACTCGAATG
* *
48200474 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
48200515 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
48200555 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
48200595 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
48200619 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:48202930 original size:31 final size:31
Alignment explanation
Indices: 48202888--48202961 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
48202878 TCCCATGCCA
48202888 CACGGGCGTGTGTGACCACATGGCCTACCTC
1 CACGGGCGTGTGTGACCACATGGCCTACCTC
*
48202919 CACGGGTGTGTGTGACCACATGGCCTACCTC
1 CACGGGCGTGTGTGACCACATGGCCTACCTC
*
48202950 CACGGGCATGTG
1 CACGGGCGTGTG
48202962 ACTCTCCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.20
Consensus pattern (31 bp):
CACGGGCGTGTGTGACCACATGGCCTACCTC
Found at i:48222266 original size:45 final size:45
Alignment explanation
Indices: 48222216--48222302 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
48222206 CCAAAACATG
48222216 TGTCACATATATCACGAACTCAGACCAAAACTCAATGAGTTTGGA
1 TGTCACATATATCACGAACTCAGACCAAAACTCAATGAGTTTGGA
* * *
48222261 TGTCACATATATCATGAACTCAGACCACAACTTAATGAGTTT
1 TGTCACATATATCACGAACTCAGACCAAAACTCAATGAGTTT
48222303 AGATTGCATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCAAAACTCAATGAGTTTGGA
Found at i:48228264 original size:43 final size:44
Alignment explanation
Indices: 48228211--48228294 Score: 134
Period size: 43 Copynumber: 1.9 Consensus size: 44
48228201 ATCAAAATAT
*
48228211 GATATTCGGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAGAC
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGAGAC
* *
48228255 GATA-TCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGA
48228295 AATGAAATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 33 0.89
44 4 0.11
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (44 bp):
GATATTCGGGCTTCGAGCCTAGCAGGCTATAATACCGGTGAGAC
Found at i:48228768 original size:38 final size:38
Alignment explanation
Indices: 48228575--48228785 Score: 226
Period size: 38 Copynumber: 5.4 Consensus size: 38
48228565 ATTTGATGTG
* *
48228575 TATCCGGGCTTAAAGACCCGCAGGCTTCGTCCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* * *
48228615 TATCCGGGTTAAAGACCCGCAAGCTTCGTGCTAGTAATA
1 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* * *
48228654 -ATCTGGGTTAAATCCCTCAAGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * * *
48228691 TATCCAGGCTTAAAGACCCGCAAGCTTCGTGCTGATATTA
1 TATCC-GGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
* * *
48228731 TATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
48228769 TATCCGGGTTAAATCCC
1 TATCCGGGTTAAATCCC
48228786 ATTATATCCG
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
37 22 0.15
38 51 0.34
39 42 0.28
40 34 0.23
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:48228779 original size:116 final size:116
Alignment explanation
Indices: 48228575--48228785 Score: 298
Period size: 116 Copynumber: 1.8 Consensus size: 116
48228565 ATTTGATGTG
* * *
48228575 TATCCGGGCTTAAAGACCCGCAGGCTTCGTCCTGGTAATATATCCGGGTTAAAGACCCGCAAGCT
1 TATCCAGGCTTAAAGACCCGCAAGCTTCGTCCTGATAATATATCCGGGTTAAAGACCCGCAAGCT
* *
48228640 TCGTGCTAGTAATAATCTGGGTTAAATCCCTCAAGCTTCGTGCTGGTAATA
66 TCGTACTAGTAATAATCCGGGTTAAATCCCTCAAGCTTCGTGCTGGTAATA
* * * *
48228691 TATCCAGGCTTAAAGACCCGCAAGCTTCGTGCTGATATTATATCCGGGTTAAA-TCCCGCAGGCT
1 TATCCAGGCTTAAAGACCCGCAAGCTTCGTCCTGATAATATATCCGGGTTAAAGACCCGCAAGCT
* * *
48228755 TTGTACTGGTATTATATCCGGGTTAAATCCC
66 TCGTACTAGTAATA-ATCCGGGTTAAATCCC
48228786 ATTATATCCG
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
115 19 0.23
116 63 0.77
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (116 bp):
TATCCAGGCTTAAAGACCCGCAAGCTTCGTCCTGATAATATATCCGGGTTAAAGACCCGCAAGCT
TCGTACTAGTAATAATCCGGGTTAAATCCCTCAAGCTTCGTGCTGGTAATA
Found at i:48228791 original size:21 final size:21
Alignment explanation
Indices: 48228765--48228806 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
48228755 TTGTACTGGT
48228765 ATTATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCC
48228786 ATTATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCC
48228807 GCAGGCTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (21 bp):
ATTATATCCGGGTTAAATCCC
Found at i:48228797 original size:59 final size:59
Alignment explanation
Indices: 48228727--48228844 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 59
48228717 TCGTGCTGAT
* *
48228727 ATTATATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTATTATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCC
*
48228786 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCC
48228845 GTAGGCTTCG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (59 bp):
ATTATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCC
Found at i:48228839 original size:38 final size:38
Alignment explanation
Indices: 48228788--48228944 Score: 251
Period size: 38 Copynumber: 4.1 Consensus size: 38
48228778 TAAATCCCAT
48228788 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
48228826 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
48228864 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * * * *
48228902 TATATCCGGGTTAAATCCCACAGGCCTAGTACTGGTAC
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
48228940 TATAT
1 TATAT
48228945 TCAAGCCTTT
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 111 1.00
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:48228873 original size:97 final size:99
Alignment explanation
Indices: 48228689--48228882 Score: 293
Period size: 97 Copynumber: 2.0 Consensus size: 99
48228679 GTGCTGGTAA
*
48228689 TATATCCAGGCTTAAAGACCCGCAAGCTTCGTGCTGATATTATATCCGGGTTAAATCCCGCAGGC
1 TATATCCAGGCTTAAAGACCCGCAAGCTTCGTGCTGATAATATATCCGGGTTAAATCCCGCAGGC
* *
48228754 TTTGTACTGGTATTATATCCGGGTTAAATCCCAT
66 TTCGTACTGGTAATATATCCGGGTTAAATCCCAT
* * * * *
48228788 TATATCC-GGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGTAGGC
1 TATATCCAGGCTTAAAGACCCGCAAGCTTCGTGCTGATAATATATCCGGGTTAAATCCCGCAGGC
*
48228851 TTCGTGCTGGTAATATATCCGGGTTAAATCCC
66 TTCGTACTGGTAATATATCCGGGTTAAATCCC
48228883 GCAGGCTTCG
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
97 72 0.84
98 7 0.08
99 7 0.08
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (99 bp):
TATATCCAGGCTTAAAGACCCGCAAGCTTCGTGCTGATAATATATCCGGGTTAAATCCCGCAGGC
TTCGTACTGGTAATATATCCGGGTTAAATCCCAT
Found at i:48228902 original size:135 final size:137
Alignment explanation
Indices: 48228658--48228921 Score: 424
Period size: 135 Copynumber: 1.9 Consensus size: 137
48228648 GTAATAATCT
*
48228658 GGGTTAAATCCCTCAAGCTTCGTGCTGGTAATATATCCAGGCTTAAAGACCCGCAAGCTTCGTGC
1 GGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCAGGCTTAAAGACCCGCAAGCTTCGTGC
* *
48228723 TGATATTATATCCGGGTTAAATCCCGCAGGCTTTGTACTGGTATTATATCCGGGTTAAATCCCAT
66 TGATAATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCAT
48228788 TATATCC
131 TATATCC
* * * * *
48228795 GGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCC-GGGTTAAA-TCCCGTAGGCTTCGTGC
1 GGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCAGGCTTAAAGACCCGCAAGCTTCGTGC
* *
48228858 TGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCA
66 TGATAATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCA
48228922 CAGGCCTAGT
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
135 74 0.63
136 7 0.06
137 36 0.31
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (137 bp):
GGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATCCAGGCTTAAAGACCCGCAAGCTTCGTGC
TGATAATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCAT
TATATCC
Found at i:48230154 original size:40 final size:40
Alignment explanation
Indices: 48230099--48230179 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
48230089 AGTAAAAAAA
*
48230099 AAAAGACTAAATTGAAAATGGTGCAAAACTTGCTAATTAT
1 AAAAGACTAAATTGAAAAAGGTGCAAAACTTGCTAATTAT
* *
48230139 AAAAGATTAAATTGAAAAAGGTGCAAAATTTGCTAATTAT
1 AAAAGACTAAATTGAAAAAGGTGCAAAACTTGCTAATTAT
48230179 A
1 A
48230180 GCAATTAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.28
Consensus pattern (40 bp):
AAAAGACTAAATTGAAAAAGGTGCAAAACTTGCTAATTAT
Found at i:48234125 original size:22 final size:22
Alignment explanation
Indices: 48234097--48234218 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
48234087 TTCCACATCC
48234097 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
48234119 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
48234143 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
48234166 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
48234190 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
48234213 ATCACA
1 ATCACA
48234219 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:48234132 original size:47 final size:47
Alignment explanation
Indices: 48234069--48234578 Score: 683
Period size: 47 Copynumber: 10.6 Consensus size: 47
48234059 CCCTTCGGGA
* * *
48234069 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
48234116 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
48234163 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
48234210 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
48234257 CTTATCACACATACT-CATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACATGTTCACATTCATCACATTGGCCATTCGGC
* *
48234304 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
48234351 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
*
48234398 CTTATCACATATATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC----ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
48234449 CTTATCACATATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
48234500 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
48234547 CTTATCACATATATATACACT-TTCACATTCAT
1 CTTATCAC--ATATATACA-TGTTCACATTCAT
48234579 TCAAATATAC
Statistics
Matches: 431, Mismatches: 22, Indels: 18
0.92 0.05 0.04
Matches are distributed among these distances:
46 2 0.00
47 314 0.73
49 22 0.05
51 92 0.21
52 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:48243138 original size:48 final size:48
Alignment explanation
Indices: 48243067--48243300 Score: 344
Period size: 48 Copynumber: 4.9 Consensus size: 48
48243057 AAATGAGATT
* *
48243067 CTGTGTAAGACCATGTCTAGGACATGGTATCGGCGATGATATATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
*
48243115 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAAATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* * * *
48243163 CTGTGGAAGACCAGGTCTGGGACATGGCATCGGCGGTGATACATGTGC
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
* *
48243211 CTATGTAAGACCATG-CTTGGGACATGGCATCGGCGATGATATGTGTGC
1 CTGTGTAAGACCATGTC-TGGGACATGGCATCGGCGATGATATATGTGC
* * *
48243259 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATAT
1 CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
48243301 GTAGAGTTAT
Statistics
Matches: 167, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.01
48 165 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (48 bp):
CTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGC
Found at i:48243320 original size:48 final size:48
Alignment explanation
Indices: 48243076--48243336 Score: 159
Period size: 48 Copynumber: 5.4 Consensus size: 48
48243066 TCTGTGTAAG
* * * * * * * * *
48243076 ACCATGTCTAGGACATGGTATCGGCGATGATATATGTGCCTGTGTAAG
1 ACCATGTCTGGGACATGGCATCAGCAATGATATGTGAGCCAGTCTAAA
* * ** * * ** *
48243124 ACCATGTCTGGGACATGGCATCGGCGATGATAAATGTGCCTGTGGAAG
1 ACCATGTCTGGGACATGGCATCAGCAATGATATGTGAGCCAGTCTAAA
* * ** ** * * *
48243172 ACCAGGTCTGGGACATGGCATCGGCGGTGATACATGTGCCTA-TGTAAG
1 ACCATGTCTGGGACATGGCATCAGCAATGATATGTGAGCC-AGTCTAAA
* * * * *
48243220 ACCATG-CTTGGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAAG
1 ACCATGTC-TGGGACATGGCATCAGCAATGATATGTGAGCCAGTCTAAA
**
48243268 ACCATGTCTGGGACATGGCATCAGCAATGATATGTAGAGTTA-TCTAAA
1 ACCATGTCTGGGACATGGCATCAGCAATGATATGT-GAGCCAGTCTAAA
*
48243316 ACCATGTCGGGGACATGGCAT
1 ACCATGTCTGGGACATGGCAT
48243337 TGGTACTTTA
Statistics
Matches: 187, Mismatches: 21, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
47 2 0.01
48 181 0.97
49 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (48 bp):
ACCATGTCTGGGACATGGCATCAGCAATGATATGTGAGCCAGTCTAAA
Found at i:48243320 original size:96 final size:94
Alignment explanation
Indices: 48243069--48243336 Score: 313
Period size: 96 Copynumber: 2.8 Consensus size: 94
48243059 ATGAGATTCT
* * * *
48243069 GTGTAAGACCATGTCTAGGACATGGTATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATG--ATATGTGGCTATGTAAGACCATGTCTG
*
48243134 GGACATGGCATCGGCGATGATAAATGTGCCT
64 GGACATGGCATCGGCGATGATAAATGTGCCA
* * * *
48243165 GTGGAAGACCAGGTCTGGGACATGGCATCGGCGGTGATACATGTGCCTATGTAAGACCATG-CTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT--ATGTGGCTATGTAAGACCATGTC-T
**
48243229 GGGACATGGCATCGGCGATGATATGTGTGCCA
63 GGGACATGGCATCGGCGATGATAAATGTGCCA
* * * * * *
48243261 GTGTAAGACCATGTCTGGGACATGGCATCAGCAATGATATGTAGAGTTATCTAAAACCATGTCGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGT-G-GCTATGTAAGACCATGTCTG
48243326 GGACATGGCAT
64 GGACATGGCAT
48243337 TGGTACTTTA
Statistics
Matches: 147, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
94 6 0.04
95 2 0.01
96 138 0.94
97 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (94 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGGCTATGTAAGACCATGTCTGGG
ACATGGCATCGGCGATGATAAATGTGCCA
Found at i:48243330 original size:144 final size:143
Alignment explanation
Indices: 48243070--48243336 Score: 358
Period size: 144 Copynumber: 1.9 Consensus size: 143
48243060 TGAGATTCTG
* *
48243070 TGTAAGACCATGTCTAGGACATGGTATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACCATGTCTGG
* * * * * *
48243135 GACATGGCATCGGCGATGATAAATGTGCCTGTGGAAGACCAGGTCTGGGACATGGCATCGGCGGT
66 GACATGGCATCAGCAATGAT-AATGTGCCTATCGAAAACCAGGTCGGGGACATGGCATCGGCGGT
48243200 GATACATGTGCCTA
130 GATACATGTGCCTA
* *
48243214 TGTAAGACCATG-CTTGGGACATGGCATCGGCGATGATATGTGTGCCAGTGTAAGACCATGTCTG
1 TGTAAGACCATGTC-TAGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
** * *
48243278 GGACATGGCATCAGCAATGAT-ATGTAGAGTTATCTAAAACCATGTCGGGGACATGGCAT
65 GGACATGGCATCAGCAATGATAATGT-G-CCTATCGAAAACCAGGTCGGGGACATGGCAT
48243337 TGGTACTTTA
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
142 4 0.04
143 2 0.02
144 100 0.94
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (143 bp):
TGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCAATGATAATGTGCCTATCGAAAACCAGGTCGGGGACATGGCATCGGCGGTG
ATACATGTGCCTA
Found at i:48257211 original size:32 final size:33
Alignment explanation
Indices: 48257170--48257257 Score: 108
Period size: 32 Copynumber: 2.7 Consensus size: 33
48257160 TGATATTGAA
* *
48257170 ATGGGCTAGGCCCAACTGATACTAG-TTCTAAT
1 ATGGGCTAGGCCCAATTGATACTAGATTCTAAG
* * *
48257202 ATGGGCTAGGCCTAATTGATA-TTGATTCTGAG
1 ATGGGCTAGGCCCAATTGATACTAGATTCTAAG
*
48257234 ATGGGCTAGGCCCAATTGAGACTA
1 ATGGGCTAGGCCCAATTGATACTA
48257258 TGATATATTG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
31 2 0.04
32 43 0.93
33 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (33 bp):
ATGGGCTAGGCCCAATTGATACTAGATTCTAAG
Found at i:48258596 original size:16 final size:17
Alignment explanation
Indices: 48258570--48258601 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48258560 TATATGTATT
48258570 TTTTTTGTTTTGTTTTG
1 TTTTTTGTTTTGTTTTG
48258587 TTTTTT-TTTTGTTTT
1 TTTTTTGTTTTGTTTT
48258602 TCTATCATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (17 bp):
TTTTTTGTTTTGTTTTG
Found at i:48258602 original size:10 final size:10
Alignment explanation
Indices: 48258568--48258602 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
48258558 TATATATGTA
48258568 TTTTTTTTGT
1 TTTTTTTTGT
*
48258578 TTTGTTTTGTT
1 TTTTTTTTG-T
48258589 TTTTTTTTGT
1 TTTTTTTTGT
48258599 TTTT
1 TTTT
48258603 CTATCATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:48259552 original size:6 final size:6
Alignment explanation
Indices: 48259543--48259593 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
48259533 TAAGTCTAAG
* * *
48259543 AAAATA AAAATA AACATA AAATTA AAAATA AAATTA AAAA-A TAAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA -AAAATA
48259591 AAA
1 AAA
48259594 CAAATGGACT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
5 1 0.03
6 35 0.95
7 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:48259563 original size:12 final size:12
Alignment explanation
Indices: 48259543--48259593 Score: 68
Period size: 12 Copynumber: 4.2 Consensus size: 12
48259533 TAAGTCTAAG
*
48259543 AAAATAAAAATA
1 AAAATAAAATTA
*
48259555 AACATAAAATTA
1 AAAATAAAATTA
48259567 AAAATAAAATTAA
1 AAAATAAAATT-A
48259580 AAAATAAAA-TA
1 AAAATAAAATTA
48259591 AAA
1 AAA
48259594 CAAATGGACT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
11 4 0.11
12 21 0.60
13 10 0.29
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAATAAAATTA
Found at i:48261517 original size:37 final size:39
Alignment explanation
Indices: 48261433--48261522 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 39
48261423 TGAGACTATA
48261433 TGTAAGACCAT-TCTAGGATATGGCATCATTATGAGACTTCG
1 TGTAAGACCATATCTAGGATATGG-A-CA-TATGAGACTTCG
* *
48261474 TGTAAGACCATATCTAGGATATGG-C-TATGAGATTTTG
1 TGTAAGACCATATCTAGGATATGGACATATGAGACTTCG
*
48261511 TTTAAGACCATA
1 TGTAAGACCATA
48261523 GCTGGGCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
37 21 0.47
39 1 0.02
41 11 0.24
42 12 0.27
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (39 bp):
TGTAAGACCATATCTAGGATATGGACATATGAGACTTCG
Found at i:48264995 original size:27 final size:26
Alignment explanation
Indices: 48264940--48265049 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 26
48264930 AAGCGTCCTA
* *
48264940 GTGGCTATGCCACAAATTATCTGATCTG
1 GTGGCTCTGCCAC--ATTATCTGTTCTG
48264968 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGTTCTG
48264995 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTGT-TCTG
* * *
48265023 GTGACTCCGTCACATTATCTGTTCTG
1 GTGGCTCTGCCACATTATCTGTTCTG
48265049 G
1 G
48265050 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
26 7 0.09
27 39 0.53
28 28 0.38
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:48265024 original size:55 final size:54
Alignment explanation
Indices: 48264940--48265049 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 54
48264930 AAGCGTCCTA
* *
48264940 GTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAAATTATCTGATCTGGTGACTCCGCCACAT-TATCTGTTCTG
* * *
48264995 GTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCCGTCACATTATCTGTTCTG
1 GTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCCGCCACATTATCTGTTCTG
48265049 G
1 G
48265050 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 20 0.41
55 29 0.59
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTGGCTATGCCACAAATTATCTGATCTGGTGACTCCGCCACATTATCTGTTCTG
Found at i:48266039 original size:15 final size:15
Alignment explanation
Indices: 48266019--48266056 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
48266009 GGGTTTACAA
48266019 AAAAAAAATATTTTC
1 AAAAAAAATATTTTC
*
48266034 AAAAAAAA-ATTTTG
1 AAAAAAAATATTTTC
*
48266048 AAAAGAAAT
1 AAAAAAAAT
48266057 TCTCGGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (15 bp):
AAAAAAAATATTTTC
Found at i:48272657 original size:28 final size:26
Alignment explanation
Indices: 48272626--48272689 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 26
48272616 AATTACTGAA
48272626 ATACCCTTATGCATGCAAAATT-ACCATT
1 ATACCCTTA-G-ATG-AAAATTGACCATT
*
48272654 ATACCCTTAGATGTAAATTGACCATT
1 ATACCCTTAGATGAAAATTGACCATT
48272680 ATACCCTTAG
1 ATACCCTTAG
48272690 GGTTTTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.15
26 19 0.56
27 1 0.03
28 9 0.26
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.33
Consensus pattern (26 bp):
ATACCCTTAGATGAAAATTGACCATT
Found at i:48272852 original size:27 final size:26
Alignment explanation
Indices: 48272794--48272906 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
48272784 AGGAAGCGTC
* *
48272794 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
48272822 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
48272849 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
48272877 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
48272903 CTGG
1 CTGG
48272907 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
26 7 0.09
27 39 0.50
28 32 0.41
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:48272879 original size:55 final size:54
Alignment explanation
Indices: 48272794--48272906 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
48272784 AGGAAGCGTC
*
48272794 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
48272849 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
48272903 CTGG
1 CTGG
48272907 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 20 0.38
55 33 0.62
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:48274627 original size:14 final size:14
Alignment explanation
Indices: 48274603--48274656 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
48274593 TAACATAAAC
48274603 ATAATAGTAAAATAA
1 ATAATA-TAAAATAA
48274618 ATAATATAAAATAA
1 ATAATATAAAATAA
* *
48274632 ATAAAAT-AACT-A
1 ATAATATAAAATAA
48274644 ATAATA-AAAATAA
1 ATAATATAAAATAA
48274657 GAAAAAGGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 9 0.27
13 4 0.12
14 14 0.42
15 6 0.18
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (14 bp):
ATAATATAAAATAA
Found at i:48278544 original size:57 final size:57
Alignment explanation
Indices: 48278448--48278583 Score: 218
Period size: 57 Copynumber: 2.4 Consensus size: 57
48278438 ATCGTATTAC
* * *
48278448 AAGATTACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAGAGCTCAATT
1 AAGATCACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAAACCTCAATT
* * *
48278505 AGGATCACCAGTCCAGGCTAAATCCATTAGGTAATGTATGCTCAAAAAACCTCAATT
1 AAGATCACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAAACCTCAATT
48278562 AAGATCACCAGTCCAGGCTAAA
1 AAGATCACCAGTCCAGGCTAAA
48278584 CCTTAATTGT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 72 1.00
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (57 bp):
AAGATCACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAAACCTCAATT
Found at i:48279851 original size:19 final size:19
Alignment explanation
Indices: 48279820--48279883 Score: 119
Period size: 19 Copynumber: 3.3 Consensus size: 19
48279810 CAGAAGATAA
48279820 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
48279840 TTTCTGAAAATGATTTACT
1 TTTCTGAAAATGATTTACT
48279859 TTTCTGAAAATGATTTACT
1 TTTCTGAAAATGATTTACT
48279878 TTTCTG
1 TTTCTG
48279884 GTGTTTGGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 38 0.86
20 6 0.14
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:48282906 original size:6 final size:6
Alignment explanation
Indices: 48282868--48282904 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
48282858 GAAAAGGATG
*
48282868 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GAGGAA G
1 GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA GGGGAA G
48282905 AGAAGATCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
GGGGAA
Found at i:48294865 original size:47 final size:48
Alignment explanation
Indices: 48294761--48294901 Score: 176
Period size: 47 Copynumber: 2.9 Consensus size: 48
48294751 ACCATGGCAA
* * * *
48294761 TATGTGTAGCCAGTGTAAAACCATATCTGGGACATAGCATCGACATTAT
1 TATGTG-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCAT
* * * *
48294810 TATGTGAGCCAATGTAAGACCGTGTCTGGG-CATGGCATCGGCATCGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCAT
* *
48294857 TATGTGAGCCAGTGTGAGACCATGTCTGGGACATGGCATCAACAT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
48294902 GAGGTATCGT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 40 0.51
48 32 0.41
49 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCAT
Found at i:48314814 original size:23 final size:23
Alignment explanation
Indices: 48314788--48314838 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
48314778 GGACACGAGT
*
48314788 GTGTGCATTGTCTCTACACGGGC
1 GTGTGCATTGTCTCCACACGGGC
48314811 GTGTGCATTGTCTCCACACGGGC
1 GTGTGCATTGTCTCCACACGGGC
48314834 GTGTG
1 GTGTG
48314839 AGACATTAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.12, C:0.25, G:0.33, T:0.29
Consensus pattern (23 bp):
GTGTGCATTGTCTCCACACGGGC
Found at i:48322293 original size:40 final size:40
Alignment explanation
Indices: 48322249--48322440 Score: 206
Period size: 40 Copynumber: 4.8 Consensus size: 40
48322239 ATAACCACAA
*
48322249 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * * * *
48322289 GCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * *
48322329 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * * *
48322369 GCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* *
48322409 GCA-AAATTGCCTTCAGGACTTAGCCCGGATAT
1 GCACAAA-TGCCTTCGGGTCTTAGCCCGGATAT
48322441 CATTCAAATG
Statistics
Matches: 121, Mismatches: 30, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
39 3 0.02
40 118 0.98
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
Found at i:48322368 original size:80 final size:79
Alignment explanation
Indices: 48322220--48322440 Score: 291
Period size: 80 Copynumber: 2.8 Consensus size: 79
48322210 ACCCAAGTTT
* * * * * *
48322220 CTTCGGAAT-TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
48322284 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* *
48322299 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
48322364 AACTCGCACAAATGC
65 AACTCGCACAAATGC
* * * * *
48322379 CTTCGGGTCTTAGCCCGAATAAAATCACTAGCAAAATTGCCTTCAGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
48322441 CATTCAAATG
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 112 0.90
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:48329342 original size:32 final size:32
Alignment explanation
Indices: 48329293--48329353 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
48329283 CATCTATTTT
*
48329293 CATTGTTTAACTCTTTGACAACACGAAAAGTC
1 CATTGTTCAACTCTTTGACAACACGAAAAGTC
* *
48329325 CATTGTTCAACTGTTTGACAACATGAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAA
48329354 AACAAAAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAGTC
Found at i:48330989 original size:79 final size:81
Alignment explanation
Indices: 48330880--48331062 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
48330870 TACTCGTTCA
* *
48330880 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
48330943 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
48330960 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
48331023 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
48331039 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
48331063 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:48331062 original size:40 final size:40
Alignment explanation
Indices: 48330859--48331062 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
48330849 CGGAATTTAA
** *
48330859 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48330899 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48330939 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48330978 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48331018 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48331058 CCGGA
1 CCGGA
48331063 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48339069 original size:79 final size:81
Alignment explanation
Indices: 48338960--48339142 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
48338950 TACTCGTTCA
* *
48338960 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
48339023 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
48339040 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
48339103 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
48339119 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
48339143 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:48339142 original size:40 final size:40
Alignment explanation
Indices: 48338939--48339142 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
48338929 CGGAATTTAA
** *
48338939 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48338979 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
48339019 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
48339058 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
48339098 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
48339138 CCGGA
1 CCGGA
48339143 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:48353870 original size:27 final size:27
Alignment explanation
Indices: 48353839--48353893 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
48353829 CAGCAAAAGA
48353839 AACGATTCTTTACTGATGTGAAAAACT
1 AACGATTCTTTACTGATGTGAAAAACT
48353866 AACGATTCTTTACTGATGTGAAAAACT
1 AACGATTCTTTACTGATGTGAAAAACT
48353893 A
1 A
48353894 CTTTTGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
AACGATTCTTTACTGATGTGAAAAACT
Found at i:48354731 original size:10 final size:10
Alignment explanation
Indices: 48354716--48354740 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
48354706 CCCAAACTTG
48354716 CAGGTGAAAA
1 CAGGTGAAAA
48354726 CAGGTGAAAA
1 CAGGTGAAAA
48354736 CAGGT
1 CAGGT
48354741 TGATGCAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (10 bp):
CAGGTGAAAA
Found at i:48355635 original size:6 final size:6
Alignment explanation
Indices: 48355616--48355656 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
48355606 TAAACACCTA
*
48355616 TTATTT TTACTTT TTA-TT TTA-TT TTATTT TTATAT TTATTT
1 TTATTT TTA-TTT TTATTT TTATTT TTATTT TTATTT TTATTT
48355657 ATATGTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 10 0.32
6 15 0.48
7 6 0.19
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:48355640 original size:17 final size:17
Alignment explanation
Indices: 48355620--48355656 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
48355610 CACCTATTAT
48355620 TTTTACTTTTTAT-TTTA
1 TTTTA-TTTTTATATTTA
48355637 TTTTATTTTTATATTTA
1 TTTTATTTTTATATTTA
48355654 TTT
1 TTT
48355657 ATATGTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTATTTTTATATTTA
Found at i:48359705 original size:46 final size:46
Alignment explanation
Indices: 48359653--48359827 Score: 235
Period size: 46 Copynumber: 3.8 Consensus size: 46
48359643 TATTTGGGCA
*
48359653 TCCGAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
48359699 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
48359745 TCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * * *
48359791 -CCTGAGTTCTTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48359828 GCGGGTTACA
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 1 0.01
46 114 0.99
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48378644 original size:20 final size:20
Alignment explanation
Indices: 48378619--48378660 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
48378609 GTAAGTTCGT
48378619 ATGTATTAAGCATTGTAATA
1 ATGTATTAAGCATTGTAATA
48378639 ATGTATTAAGCATTGTAATA
1 ATGTATTAAGCATTGTAATA
48378659 AT
1 AT
48378661 TATACTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATTAAGCATTGTAATA
Done.