Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 153 of 290
Found at i:49027320 original size:39 final size:39
Alignment explanation
Indices: 49027133--49027351 Score: 164
Period size: 39 Copynumber: 5.6 Consensus size: 39
49027123 ATGAATGCTG
* * * * * *
49027133 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
49027173 TCCGGACTAAGAT-CCGAA-GCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
49027212 TCCGGG-TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
49027251 T-CGGGTTAAGT-CCGAA-GCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
49027288 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
49027327 ACCGGGCTATGTCCCGAAGAGCATT
1 TCCGGGTTAAGTCCCGAAG-GCATT
49027352 TGAACGAGGA
Statistics
Matches: 145, Mismatches: 21, Indels: 26
0.76 0.11 0.14
Matches are distributed among these distances:
36 3 0.02
37 15 0.10
38 29 0.20
39 63 0.43
40 34 0.23
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:49031798 original size:39 final size:39
Alignment explanation
Indices: 49031594--49031816 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
49031584 TTGAATGCTG
* * * * * *
49031594 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
49031634 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
49031674 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
49031714 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
49031754 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
49031793 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
49031817 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:49031836 original size:79 final size:80
Alignment explanation
Indices: 49031674--49031851 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
49031664 AGATACAAGT
* * * *
49031674 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
49031739 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
49031754 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
49031818 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
49031833 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
49031852 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:49034264 original size:46 final size:46
Alignment explanation
Indices: 49034197--49034371 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
49034187 TATAACCTGC
*
49034197 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
49034243 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATTC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* * * * *
49034289 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
49034336 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
49034372 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 63 0.58
47 28 0.26
48 3 0.03
49 5 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:49034316 original size:93 final size:93
Alignment explanation
Indices: 49034204--49034373 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
49034194 TGCCCATAAG
* * *
49034204 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
49034269 ACGAGCTCGGATTCCTAGTTACATCTCA
66 ACGAGCTCGGATTCCTAGTTACATCTCA
*
49034297 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
49034362 ACGAGTTCGGAT
66 ACGAGCTCGGAT
49034374 GCTCAACCAT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATTCCTAGTTACATCTCA
Found at i:49038778 original size:22 final size:23
Alignment explanation
Indices: 49038746--49038791 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
49038736 ATTTCGACTC
*
49038746 TAAATGTTTATTATTATTTTTTA
1 TAAATGTTTATTAATATTTTTTA
49038769 TAAAT-TTTATTAATATTTTTTA
1 TAAATGTTTATTAATATTTTTTA
49038791 T
1 T
49038792 TATGAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (23 bp):
TAAATGTTTATTAATATTTTTTA
Found at i:49039905 original size:96 final size:97
Alignment explanation
Indices: 49039788--49040021 Score: 289
Period size: 96 Copynumber: 2.4 Consensus size: 97
49039778 GTTTTTAAAT
* * ** *
49039788 TTTAGGG-TTTTAAGGAAAAAATTAAATAAATTAAGGTTT-AGTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAAG-GTTACTTAAGTAAATTAATTA
*
49039851 CT-AATTTT-AAAAAATTAGATTATGG-TTTAGTG
65 -TAAATTTTAAAAAAATTAGATTA-GGATTTAGGG
* *
49039883 TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAAGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAAGGTTACTTAAGTAAATTAATTAT
49039948 AAATTTTAAAAAAATTAGATTAGGATTTTAGGG
66 AAATTTTAAAAAAATTAGATTAGGA-TTTAGGG
* * *
49039981 TTTAGGGTATTTAAGAAAAAAAACCAAATAAATTAGGGTTT
1 TTTAGGGTTTTTAAG-GAAAAAATCAAATAAATTAGGGTTT
49040022 GGGGTTTAGG
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
95 7 0.06
96 55 0.46
97 16 0.13
98 19 0.16
99 23 0.19
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.39
Consensus pattern (97 bp):
TTTAGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAAGGTTACTTAAGTAAATTAATTAT
AAATTTTAAAAAAATTAGATTAGGATTTAGGG
Found at i:49040290 original size:126 final size:126
Alignment explanation
Indices: 49040072--49040735 Score: 1071
Period size: 126 Copynumber: 5.3 Consensus size: 126
49040062 AAAAGCTTCT
** *
49040072 ACGTGGACGCTCTTTTGCTACAAAAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
49040137 ATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
49040198 ACGTGGACGGTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
49040263 ATAGTG-CAAAAAACGCTTCAAGTAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTC-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
*
49040324 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
49040389 ATAGTGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* * **
49040449 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
49040514 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAATAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* * **
49040575 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
49040640 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAATAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
49040701 ACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
49040736 TAACTTGGGC
Statistics
Matches: 507, Mismatches: 28, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
125 116 0.23
126 391 0.77
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:49040508 original size:251 final size:252
Alignment explanation
Indices: 49040064--49040735 Score: 1087
Period size: 251 Copynumber: 2.7 Consensus size: 252
49040054 TAATCTAAAA
* ** *
49040064 AAGCTTCTACGTGGACGCTCTTTTGCTACAAAAGTCTCTGAAAAAATAAATTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* *
49040129 CTGCGCAAATAATGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGC
* * *
49040194 TCCCACGTGGACGGTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGT
131 TCCCACGTGGACGCTCTTTTGCTACAGTGGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
* *
49040259 GCAAATAGTG-CAAAAAACGCTTCAAGTAGGATGCATTGTCAGCAAAAGTACTGAAAG
196 ACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
49040316 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAAATAATTTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
* *
49040381 CTGCGCAAATAGTGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGC
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGC
* *
49040445 TCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
131 TCCCACGTGGACGCTCTTTTGCTACAGTGGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
* * *
49040510 ATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAT
196 ACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
* * *
49040567 AAGCTCCCACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
1 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
** *
49040632 CTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAATAAGC
66 CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGC
*
49040697 TCCCACGTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
131 TCCCACGTGGACGCTCTTTTGCTACAGTGGTATCTGAAA
49040736 TAACTTGGGC
Statistics
Matches: 388, Mismatches: 30, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
251 230 0.59
252 158 0.41
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (252 bp):
AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGT
CTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGC
TCCCACGTGGACGCTCTTTTGCTACAGTGGTATCTGAAAAAATAATTTTGAGAAGACGTGTCTGC
ACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:49043917 original size:116 final size:116
Alignment explanation
Indices: 49043742--49044122 Score: 618
Period size: 116 Copynumber: 3.3 Consensus size: 116
49043732 TTTATATTTT
* * *
49043742 ATTACATGAAATAATATAAAAATATTCAAAATATTTCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* *
49043807 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
* *
49043858 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
49043923 AAAATATAAAAGTAATTTATAATTAATTTATTTAAAATAACCTTTTATCTA
66 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
* *
49043974 ATTACATTAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCAATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
*
49044039 AGAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 A-AAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
* *
49044091 ATTACATGAAATAATATGAAAAGATTCAAAAT
1 ATTACATGAAATAATATAAAAATATTCAAAAT
49044123 GTTTGTACAA
Statistics
Matches: 243, Mismatches: 21, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
116 168 0.69
117 75 0.31
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATATTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:49044647 original size:30 final size:30
Alignment explanation
Indices: 49044608--49044671 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
49044598 TGAACTGTTC
*
49044608 GGCCCGGTGACTGTGTAGGTCCTGTTGCTG
1 GGCCCGGTGACTGTGTAGGTCCTGTTGATG
* * * *
49044638 GGCCGGGTGATTGTGTGGGTGCTGTTGATG
1 GGCCCGGTGACTGTGTAGGTCCTGTTGATG
49044668 GGCC
1 GGCC
49044672 TGCGTCGTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.06, C:0.19, G:0.45, T:0.30
Consensus pattern (30 bp):
GGCCCGGTGACTGTGTAGGTCCTGTTGATG
Found at i:49046380 original size:20 final size:20
Alignment explanation
Indices: 49046347--49046397 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
49046337 GAACGAGAGT
49046347 TTTGAGAGGAATTTAAG-AGAAA
1 TTTGAGA-G-ATTTAAGAAG-AA
*
49046369 TTTGAGAGATTTGAGAAGAA
1 TTTGAGAGATTTAAGAAGAA
49046389 TTTGAGAGA
1 TTTGAGAGA
49046398 ATATTGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 17 0.63
21 3 0.11
22 7 0.26
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAAGAA
Found at i:49046391 original size:11 final size:10
Alignment explanation
Indices: 49046347--49046404 Score: 64
Period size: 11 Copynumber: 5.5 Consensus size: 10
49046337 GAACGAGAGT
49046347 TTTGAGAGGAA
1 TTTGAGA-GAA
*
49046358 TTTAAGAGAAA
1 TTTGAGAG-AA
49046369 TTTGAGAG-A
1 TTTGAGAGAA
49046378 TTTGAGAAGAA
1 TTTGAG-AGAA
49046389 TTTGAGAGAA
1 TTTGAGAGAA
49046399 TATTGA
1 T-TTGA
49046405 AAGATTGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 7 0.17
10 8 0.20
11 26 0.63
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:49046410 original size:31 final size:31
Alignment explanation
Indices: 49046347--49046410 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
49046337 GAACGAGAGT
* *
49046347 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAAGAATTTAAGAGAAATTTGAAAGA
*
49046378 TTTGAGAAGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAAGAATTTAAGAGAAAT-TTGAAAGA
49046409 TT
1 TT
49046411 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (31 bp):
TTTGAGAAGAATTTAAGAGAAATTTGAAAGA
Found at i:49046617 original size:16 final size:16
Alignment explanation
Indices: 49046596--49046628 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49046586 ATGACATCCT
49046596 TGAGGAAGCGTTTTCC
1 TGAGGAAGCGTTTTCC
49046612 TGAGGAAGCGTTTTCC
1 TGAGGAAGCGTTTTCC
49046628 T
1 T
49046629 ACTTTTTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (16 bp):
TGAGGAAGCGTTTTCC
Found at i:49053110 original size:19 final size:18
Alignment explanation
Indices: 49053079--49053131 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
49053069 TTTGGGACTT
49053079 ATTTTTAAAATTTTAAAC
1 ATTTTTAAAATTTTAAAC
* *
49053097 ATTTTTATATATTTTTAAC
1 ATTTTTA-AAATTTTAAAC
49053116 ATTTTTTTAAAATTTT
1 A--TTTTTAAAATTTT
49053132 TTAAATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.24
19 10 0.34
20 6 0.21
21 6 0.21
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTTAAAATTTTAAAC
Found at i:49053131 original size:9 final size:9
Alignment explanation
Indices: 49053079--49053139 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
49053069 TTTGGGACTT
49053079 ATTTTTAAA
1 ATTTTTAAA
49053088 A-TTTTAAA
1 ATTTTTAAA
*
49053096 CATTTTTATAT
1 -ATTTTTA-AA
49053107 ATTTTTAACA
1 ATTTTTAA-A
*
49053117 TTTTTTTAAA
1 -ATTTTTAAA
*
49053127 ATTTTTTAA
1 ATTTTTAAA
49053136 ATTT
1 ATTT
49053140 AAAAAATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
8 7 0.17
9 14 0.33
10 13 0.31
11 8 0.19
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:49057814 original size:13 final size:13
Alignment explanation
Indices: 49057796--49057820 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49057786 ATAATTTTGC
49057796 TTTTAGAAAACAT
1 TTTTAGAAAACAT
49057809 TTTTAGAAAACA
1 TTTTAGAAAACA
49057821 AAAATGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (13 bp):
TTTTAGAAAACAT
Found at i:49062305 original size:3 final size:3
Alignment explanation
Indices: 49062297--49062380 Score: 150
Period size: 3 Copynumber: 28.0 Consensus size: 3
49062287 GTCACTACCA
49062297 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* *
49062345 AAG AAG AAG AAG AAG AAG AAG AAT AAG AAT AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
49062381 GAAAAAAAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:49064995 original size:549 final size:542
Alignment explanation
Indices: 49063960--49065638 Score: 2020
Period size: 549 Copynumber: 3.1 Consensus size: 542
49063950 ACCCATTATG
* *
49063960 TCATCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTTAAGGGGTTAAATAGTAATTA
1 TCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAATAGTAATTA
* * **
49064025 TACCCAGAATATTTATGGCCAATTATT---GAAA-TATGTATGTTATATTATAAAACATTAGTAA
66 TACCAAGAATATATATGG-CGGTTATTGAAGAAAGTATGTATGTTATATTATAAAACATTAGTAA
*
49064086 TGAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGCA-GGCAAA
130 TTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAG-ATGGCAAA
*
49064150 AACAAAAGCATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATAAGAGAGGAACGTT
194 AACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATAAGAGAGGAACGTT
* * * *
49064215 TGGCTTTAAGGGTGTAA-CCCAACAATTTTTTTTTTGGAAATGTTAAAACATGTCAAAGGTGTAA
259 CGGCTTTAAGGGTGTAACCCCAAAAATTTTGTTTTTGGAAATGTTAAAACATGTCAAGGGTGTAA
* * * *
49064279 CGTTT-AGCTTTGAAAATATATTTTTACATGAGAAA-TACAGCTTGATTCGAC-AGTTTCA-CTC
324 CGTTTGA-CTTTGAAAATATTTTTTTATATGAGAAACTCCA-CTTGATACGACGA-TTTCACCT-
* *
49064340 ATTGTGTCGTCTTATTATGAAAGTATTATTATTATTATTATTATCATGAACTTGCTGCGGAGGCA
385 ATTGTGTCGTCTTATTAT-AAA--A--A-TATTATTATTTTTATCATGAA-TTG-TTCGGAGGCA
* *
49064405 ATTTTAAC-AAAAAAAAATTGATACGACGGTTTCACCCATTGTGCCATCTTGTTATAAAATATTA
442 ATTTTAACAAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATAAAATATTA
* *
49064469 TTATTTTTATCATAAAACTGCTGTAAACCCGTTGCC
507 TTATTTTTATCATGAAACTGCTGTAAACCCATTGCC
* *
49064505 TCATCTTGTGATTTGCTTAAGGATTTAT-ATCTAGAACTTAATTTAAAGGGGTTAAATAATAATT
1 TCATCTTGTAATTTGCTTAAGGATTTATAAT-TAGAACTTAATTTAAAGGGGTTAAATAGTAATT
*
49064569 ATACCAAGAATATATATGGTCGGTTATTGAAGAAAGTATGTATGTTATATTATAAAACATTATTA
65 ATACCAAGAATATATATGG-CGGTTATTGAAGAAAGTATGTATGTTATATTATAAAACATTAGTA
* * *
49064634 ATTAAAACTATAAAATGAAAATTTAATTAAAAAGAACATAAGTAATAATGGGAATACG-TGGCAA
129 ATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATA-GATGGCAA
* *
49064698 AAACAAAAATATTTCCATCTTTTCTTCATGCAAACCGAACCAAGTGAGAAATAAGAGAGGAACGT
193 AAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATAAGAGAGGAACGT
*
49064763 TCGACTTTAAGGGTGTAATGCCCCAAAAACTTTTGTTTTTGGAAATGTTAAAACATGTCAAGGGT
258 TCGGCTTTAAGGGTGTAA--CCCCAAAAA-TTTTGTTTTTGGAAATGTTAAAACATGTCAAGGGT
* * * *
49064828 GTAATGTTTGATTTTGAAAATATTTTTTTATATGAGAAACTGCCAATTGATACAACGATTTCACC
320 GTAACGTTTGACTTTGAAAATATTTTTTTATATGAGAAACT-CCACTTGATACGACGATTTCACC
49064893 TATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGATATTGTTTCGGAGGCAATTTT
384 TATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATGA-ATTG-TTCGGAGGCAATTTT
* *** *
49064958 AACAAAAAAAAAACTAATACGTTAGTTTCATCCATTGTGTCATCTTGTTATAAAATATTATTATT
447 AACAAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATTATT
* * *
49065023 TTTATCATGAAATTGTTGTAAACCCATTGTGC
512 TTTATCATGAAACTGCTGTAAACCCATTG-CC
* * * *
49065055 -CATCTTGTAATTTGCTTAAGGAATTATAATTAGATCTTAATTCAAAGGGGCTAAATAGTAATTA
1 TCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAATAGTAATTA
* * * * **
49065119 TACCTAGAATATATATATATGGCGGGTTATTGAAGTAAGTATGTAAGTTTTATTATAAAATGTTA
66 TACC---AAGA-ATATATATGGC-GGTTATTGAAGAAAGTATGTATGTTATATTATAAAACATTA
* * *
49065184 GTAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACCTAAGTGATCATGGGAATAGAAT-G
126 GTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAG-ATGG
* * * * * *
49065248 CAAAAA-AAAAACATTTCCATCTTTTTTTTGTGCAAACCGAACAAAGTGAGAAAGAAGAGACGAG
190 CAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATAAGAGAGGAA
* * * * * * *
49065312 CTTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGTAATTGCTAAAACTTGTTAAG
255 CGTTCGGCTTTAAGGGTGT-A-ACCCCAAAAA-TTTTGTTTTTGGAAATGTTAAAACATGTCAAG
* * * * * * * * * *
49065377 GGTGTAACATTAGGCTTTGAAAATATTTTTTTTATATGAGAATCTACCACCTCATATGATGGTTA
317 GGTGTAACGTTTGACTTTGAAAATA-TTTTTTTATATGAGAAACT-CCACTTGATACGACGATTT
* * * *
49065442 CACCCATTGTGTCATCTTATTATAAAAATATTATTCTTTTTATCATGAAATTGTT---A--AAAT
380 CACCTATTGTGTCGTCTTATTATAAAAATATTATTATTTTTATCATG-AATTGTTCGGAGGCAAT
* * * * *
49065502 TTT---AATAAAAAAACTGATACAACGGTTTCACCCATTGTATCATCTTGTTATAAAATGTTGTT
444 TTTAACAAAAAAAAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATT
* * * *
49065564 ATTTTTATCATGGAACTACTATAAACCCATTGCA
509 ATTTTTATCATGAAACTGCTGTAAACCCATTGCC
* *
49065598 TCATCTTGTAATTTACTTAAGGATTTAAAATTAGAACTTAA
1 TCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAA
49065639 GTTACCTAGA
Statistics
Matches: 981, Mismatches: 121, Indels: 65
0.84 0.10 0.06
Matches are distributed among these distances:
544 114 0.12
545 80 0.08
547 6 0.01
548 43 0.04
549 304 0.31
550 4 0.00
551 1 0.00
552 136 0.14
553 252 0.26
554 36 0.04
555 5 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (542 bp):
TCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAATAGTAATTA
TACCAAGAATATATATGGCGGTTATTGAAGAAAGTATGTATGTTATATTATAAAACATTAGTAAT
TAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGATGGCAAAAA
CAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGTGAGAAATAAGAGAGGAACGTTCG
GCTTTAAGGGTGTAACCCCAAAAATTTTGTTTTTGGAAATGTTAAAACATGTCAAGGGTGTAACG
TTTGACTTTGAAAATATTTTTTTATATGAGAAACTCCACTTGATACGACGATTTCACCTATTGTG
TCGTCTTATTATAAAAATATTATTATTTTTATCATGAATTGTTCGGAGGCAATTTTAACAAAAAA
AAAACTGATACGACGGTTTCACCCATTGTGTCATCTTGTTATAAAATATTATTATTTTTATCATG
AAACTGCTGTAAACCCATTGCC
Found at i:49067813 original size:49 final size:47
Alignment explanation
Indices: 49067410--49067825 Score: 247
Period size: 48 Copynumber: 8.7 Consensus size: 47
49067400 GAATACCAAA
* * * *
49067410 GCCATGTCCCTGACATGGTCTTACATGGGTCT-ACAT--AT--CGAT
1 GCCATGTCCCAGACATGGTCTTACACGGATCTCATATCAATGCCGAT
* * * * * * **
49067452 GCCATATCCCAGATATGGTCTTATATGAAGTCTCATGTCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACGGA-TCTCATATCAATGCCGAT
* * * * * *
49067500 GGCATGTCTCAGACATGGTCTTATACGGGACCTCATAGCAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACAC-GGATCTCATATCAATGCCGAT
* * * * *
49067548 GTCATATCCCAG-CTATGGTCTTACATGGGATCTCATA-CTGATGCCAAT
1 GCCATGTCCCAGAC-ATGGTCTTACA-CGGATCTCATATC-AATGCCGAT
* * * *
49067596 GCCATATCCCAGATATGGTCTTACACTGGCA-CACATATCAACGCCGAT
1 GCCATGTCCCAGACATGGTCTTACAC-GG-ATCTCATATCAATGCCGAT
* * * * *
49067644 GCCATGTCCCAGACATGGTTTTACGCTGGCA-CACATATCAACGTCGAT
1 GCCATGTCCCAGACATGGTCTTACAC-GG-ATCTCATATCAATGCCGAT
** * * * * *
49067692 GTTATGTCCCAGATATGGTCTTATACTGGCTCTCATCTCGGATGCCGAT
1 GCCATGTCCCAGACATGGTCTTACAC-GGATCTCATATC-AATGCCGAT
* * * * *
49067741 GCTATGTCCCAGACATAGTCTTACACGAGATCTCATCTTAAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACG-GATCTCAT-ATCAATGCCGAT
49067790 GCCATGTCCCAGACATGGTCTTACACGAGATCTCAT
1 GCCATGTCCCAGACATGGTCTTACACG-GATCTCAT
49067826 TAACAATGGT
Statistics
Matches: 293, Mismatches: 63, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
42 23 0.08
43 3 0.01
44 2 0.01
46 1 0.00
47 2 0.01
48 181 0.62
49 80 0.27
50 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACGGATCTCATATCAATGCCGAT
Found at i:49075803 original size:160 final size:160
Alignment explanation
Indices: 49075537--49075916 Score: 553
Period size: 160 Copynumber: 2.4 Consensus size: 160
49075527 CAATCCTGCC
* *
49075537 AAATTAACACGGGCATGCGACACGCCTGTGCCCACCACCCGTGGTCAAAATTGTCGAAATAACAC
1 AAATTAACACGGGCATGCGACACGCCCGTGCCCACCACCCGTGGTTAAAATTGTCGAAATAACAC
* * * * *
49075602 GGGCGTACGCATACATACACGGGCGTGGGAGAAGTGAACGAAGTAGGATATGGTGTGAAACATGC
66 GGGCGTACGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGAAACACGC
** *
49075667 CTGTGTCTATAAGCCGTGGTAGAAACTGAG
131 CCATGTCTATAAGCCATGGTAGAAACTGAG
* * * * *
49075697 AAATTAACACAGGCGTACGACACGCCCGTGCCCACCACCCGTGGTTGAAATTGTCGAAATAACAG
1 AAATTAACACGGGCATGCGACACGCCCGTGCCCACCACCCGTGGTTAAAATTGTCGAAATAACAC
* *
49075762 GGGCGTGCGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGCAACACGC
66 GGGCGTACGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGAAACACGC
49075827 CCATGTCTATAAGCCATGGTAGAAACTGAG
131 CCATGTCTATAAGCCATGGTAGAAACTGAG
* * ** * *
49075857 AAATTACCACGGGCATGTGACACGATCGTGCCCACCACCCGTGGTTAAAACTGTCAAAAT
1 AAATTAACACGGGCATGCGACACGCCCGTGCCCACCACCCGTGGTTAAAATTGTCGAAAT
49075917 GACATGGTTG
Statistics
Matches: 193, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
160 193 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (160 bp):
AAATTAACACGGGCATGCGACACGCCCGTGCCCACCACCCGTGGTTAAAATTGTCGAAATAACAC
GGGCGTACGCATACATACACAGGCGTGGGAGAAGCGAACGAAGTAGGACACGGTGTGAAACACGC
CCATGTCTATAAGCCATGGTAGAAACTGAG
Found at i:49076037 original size:18 final size:18
Alignment explanation
Indices: 49076014--49076062 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
49076004 ATTCATCTTT
49076014 TATTTATTTTTATTTTTA
1 TATTTATTTTTATTTTTA
* *
49076032 TATTTATTTATCTTTTTA
1 TATTTATTTTTATTTTTA
*
49076050 -ACTTACTTTTTAT
1 TATTTA-TTTTTAT
49076063 CCTATTTCTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTATTTTTATTTTTA
Found at i:49078030 original size:13 final size:13
Alignment explanation
Indices: 49078012--49078036 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49078002 AGCCACACCG
49078012 CACGGGCGTGTCA
1 CACGGGCGTGTCA
49078025 CACGGGCGTGTC
1 CACGGGCGTGTC
49078037 CTTGTCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:49085826 original size:47 final size:47
Alignment explanation
Indices: 49085757--49085925 Score: 202
Period size: 47 Copynumber: 3.6 Consensus size: 47
49085747 GCCCATAAGT
*
49085757 GAACTCGGACTCAAATCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * * ***
49085804 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCTC
49085850 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* *
49085897 GAACTCGGACTCACCTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
49085926 CATTCGCATC
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 32 0.32
47 58 0.58
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:49085864 original size:46 final size:46
Alignment explanation
Indices: 49085804--49085971 Score: 207
Period size: 46 Copynumber: 3.6 Consensus size: 46
49085794 TACATCTCTC
49085804 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * * ***
49085850 GAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTCT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAGT
*
49085896 CGAACTCGGACTCACCTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*
49085943 GAACTCGGACTCAACTCAACAAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
49085972 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 59 0.59
47 31 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:49085908 original size:93 final size:93
Alignment explanation
Indices: 49085749--49085975 Score: 418
Period size: 93 Copynumber: 2.4 Consensus size: 93
49085739 TGTAACCTGC
*
49085749 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
49085814 TCAACTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
49085842 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
*
49085907 TCACCTCAACGAGTTCGGACATTCGCAT
66 TCAACTCAACGAGTTCGGACATTCGCAT
* *
49085935 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
49085976 CAAATATCCT
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 130 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAACTCGGAC
TCAACTCAACGAGTTCGGACATTCGCAT
Found at i:49089168 original size:93 final size:93
Alignment explanation
Indices: 49089056--49089225 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
49089046 CCCATAAGTG
* *
49089056 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
49089121 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
*
49089149 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
49089214 GAGTTCGGATGC
66 GAGCTCGGATGC
49089226 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:49089222 original size:46 final size:46
Alignment explanation
Indices: 49089047--49089222 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
49089037 TGTAACCCGC
* *
49089047 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
49089093 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
49089143 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
49089186 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
49089223 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
46 64 0.57
47 27 0.24
49 1 0.01
50 6 0.05
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:49091613 original size:15 final size:15
Alignment explanation
Indices: 49091581--49091644 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
49091571 CAAAGATAAC
49091581 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
49091594 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
49091609 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
49091624 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
49091639 AAGAAA
1 AAGAAA
49091645 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 3 0.07
15 35 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49094691 original size:93 final size:93
Alignment explanation
Indices: 49094579--49094750 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
49094569 GCCCATAAGT
* *
49094579 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49094644 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
49094672 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
49094737 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
49094751 AACCATCCTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:49094746 original size:46 final size:46
Alignment explanation
Indices: 49094571--49094746 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
49094561 TGTAACCCGC
* *
49094571 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
49094617 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
49094663 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
49094710 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
49094747 TGCCAACCAT
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:49099692 original size:85 final size:84
Alignment explanation
Indices: 49099593--49099754 Score: 315
Period size: 85 Copynumber: 1.9 Consensus size: 84
49099583 AGCTCGGGCG
49099593 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAA
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC-AGTTACATCTCTCGAA
49099658 CTCGGACTCAACTTCGGACA
65 CTCGGACTCAACTTCGGACA
49099678 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCAGTTACATCTCTCGAAC
1 TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCAGTTACATCTCTCGAAC
49099743 TCGGACTCAACT
66 TCGGACTCAACT
49099755 CAACGAGTTC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 29 0.38
85 48 0.62
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (84 bp):
TTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCAGTTACATCTCTCGAAC
TCGGACTCAACTTCGGACA
Found at i:49118330 original size:559 final size:549
Alignment explanation
Indices: 49116483--49119242 Score: 2489
Period size: 545 Copynumber: 5.2 Consensus size: 549
49116473 GCGGTTTCAA
* * *
49116483 CCATTGTTTCATCTTGTAATTTGCTTAAGAATTTTTAATTAGAACTTAATTTAAAGGGGTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
* * * *
49116548 AGTAATTATACCTAGAATATATAT--ATTG-T-CTGAAGTAAGTTTGTATGCTATATTATAAAAC
66 AGTAATTATACCTAGAATATATATGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAAAC
* *
49116609 ATTGGTAATTAAAATTATAAAATG-AAATTTTATTAAATAGAACATAAGTGATAATGGGAATAGG
131 ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGG
* * * * *
49116673 TGG---GAA-AAAAATATTTCCATCTTTTCTTCGTGCAAACCAAATCAAGTGA-GAAATAAGAGA
196 TGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAG-GAGGAAAGAAGAGA
* * * * * * * *
49116733 G-TAACTTCTGTTTTAAGAGTGTAATG-CCAGAAAAATTTTTATTTTTTGAAATGTTAAAACATG
260 GAAAAGTTCGGCTTTAAGGGTGTAACGCCCA-AAAAA-TTTT-GTTTTGGAAATGTTAAAACATG
* * *
49116796 TCAAGCGTGTAACGTTCGACTTTTACAATATTTTTTTTATATGAG-AAA-----CC-G---C--C
322 TCAAGGGTGTAACGTTCGACTTTGAAAATA-TTTTTTTATATGAGAAAATGCCGCCTGATTCGAC
* * * * *
49116849 ---T-----CATTGTGTCGTCTTGTTATAAAAATATTATCATTTTTAACATGAAATTGTTGCGGA
386 GGTTACACCCATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGC-GA
* * * *
49116906 GGCAATTTTAACAAAAAAAAAACT-GATAT--GACAATTTCACCCATTGTGTTATCTTGTTATAA
450 GGCAATTTTAACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAA
49116968 AATATTATTATTTTTATCATGAAACTGCTGTAAAC
515 AATATTATTATTTTTATCATGAAACTGCTGTAAAC
* * * * *
49117003 CCATTGTGTCATTTTTTAATTTACTTAAGGATTTAT-A-T----C-TAATTTAAAGGGGTTAAAC
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
* * * *
49117061 AATAATTATACCAATAATATATATGGCTGGTTATTAAAGTAAGTATG-A---TATATTATAAAAC
66 AGTAATTATACCTAGAATATATATGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAAAC
* *
49117122 ATTAGTAATTAAAATTATAAAATTAAAATTTAATTAAATAGAACATAAGTGATAATGGAAATAGG
131 ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGG
* * *
49117187 TGGCAAAAACAAAAATATTTCCATCTTTTCTTCATGCAAATCGAACCAAGG-GAGAAAGAA-ATG
196 TGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAG-GAAAGAAGA-G
* * * *
49117250 AGGAACGTTCGGCTTTAAGGGTGTAATGCCCCAAAAAATTTTGTTCTTGGAATTGTTAAAACATG
259 AGAAAAGTTCGGCTTTAAGGGTGTAACG-CCCAAAAAATTTTGTT-TTGGAAATGTTAAAACATG
* * * * *
49117315 -CAAGGGTGTAACGTTCGGA-TATGAAAATATTTTCTTATATGAGAAAATGCCGCCTTATACGAT
322 TCAAGGGTGTAACGTTC-GACTTTGAAAATATTTTTTTATATGAGAAAATGCCGCCTGATTCGAC
* * * *
49117378 GGTTACACCCATCCTTTCATCTTATTATAAAAATATTATTCTTTGTATCATGAAATTGTTGCGAT
386 GGTTACACCCATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGA-
* * ** * *
49117443 GACAATTTTAAC-----AAAAAA-AT-GATACGAGGGGTTCACCTATTGTGTCATCTTGTTATAA
450 GGCAATTTTAACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAA
* *
49117501 AATATTATTATTTTTATCATGGAACTACTGTAAAC
515 AATATTATTATTTTTATCATGAAACTGCTGTAAAC
* * * * * * * *
49117536 CCTTTGTGTCATCTTATAATTTGCTGAAGGATTTGTAAATAGAACTTAAGTTAAAAGAGGTTAAA
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAA-TTTAAAGGGGTTAAA
* * *
49117601 TAGTCATTCTACCTAGAATATATATGGCTGGTTATTGAAGTTAGTATGTATGCTATATTATAAAA
65 TAGTAATTATACCTAGAATATATATGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAAA
* *
49117666 CATTAGGAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAG
130 CATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAG
* *
49117731 GTGGCAAAAACAAAAACATTTCCATCTTTCCTTGGTGCAAACCGAACCAAGGAGGAAAGAAGAGA
195 GTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAGGAAAGAAGAGA
* ***** * *
49117796 GAAAAGTTTGGCTTTAAGGGTGTAACGCCCATTTTTTTTTTGTTTTGGAAATGTTAAAATAAGTC
260 GAAAAGTTCGGCTTTAAGGGTGTAACGCCCA-AAAAATTTTGTTTTGGAAATGTTAAAACATGTC
* * * *
49117861 AAAGGTGTAACGTTCAACTTTGAAAATATTTTTTTATATGAGAAACTGTCGCCTGATTCGACGGT
324 AAGGGTGTAACGTTCGACTTTGAAAATATTTTTTTATATGAGAAAATGCCGCCTGATTCGACGGT
* * * * * *
49117926 TTCACCCATTGTGACATTTTATTATAAAAATAGTATTATTTTTATCATGAAATCGTTGCAGAGGC
389 TACACCCATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGC-GAGGC
** *
49117991 AATTTTAACAAAAAAAATATAAATATATATATTACGACAGTTTCACCTTTTGTGTTATCTTGTTA
453 AATTTTAAC--AAAAAA-A-AAA-ATATATA-TACGACAGTTTCACCCATTGTGTCATCTTGTTA
* * * *
49118056 TAAATTATTATTATTTTTATTATGAAATTGCTATAAAC
512 TAAAATATTATTATTTTTATCATGAAACTGCTGTAAAC
* * *
49118094 TCATTGTATCATCTTGTAATTTGCTTAAGGATGTATAATTAAAACTTAATTTAAAGGGGTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAA-
* * *
49118159 TA-TAATTATACCTAGAATATATATGTGGCGGGCTATTGAAGTAAGTATGTATGTTATATTATAA
65 TAGTAATTATACCTAGAATATATA--TGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAA
*** *
49118223 AACACCCGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATATGTGATAATGGGAAT
128 AACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAAT
* * * * ** * *
49118288 AGGTGGCAAAAGCAAAGACATTTCCATCTTTTCTTTGTGCAAACCGAACCAAGCAATAAGGAAGT
193 AGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAGGAAAGAAGA
* * ** **
49118353 GAGGAACA-TTCGGCTTTAAGGGTGTAATGCCCCCAAAAAATCGT-TTTTGGAGGTGTTAAAACA
258 GA-GAAAAGTTCGGCTTTAAGGGTGTAA--CGCCCAAAAAATTTTGTTTTGGAAATGTTAAAACA
* * * * *
49118416 TGTCAAGGGTGTAATGTTCGGCTTTTTAAAA-ATATTTTTTATATGAGAAATTGCCACCTGATAT
320 TGTCAAGGGTGTAACGTTCGAC-TTTGAAAATAT-TTTTTTATATGAGAAAATGCCGCCTGAT-T
* * * * * * *
49118480 -GACGATTCCACGCATTTTGTCGTCTTGTTAT--AAA-ATTATTATTATTATCATGAAATTGTTG
382 CGACGGTTACACCCATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTG
* ** * * * * *
49118541 CCGTGGCAATTTT-A-ATTAAAAAAAAT-T-GATACAACGGTTTCACCCATTGTGCCATCTTATT
447 -CGAGGCAATTTTAACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTT
* * * * *
49118602 ATAAAATATTATTATTATTATCATAAAACCGTTGTAGAC
511 ATAAAATATTATTATTTTTATCATGAAACTGCTGTAAAC
* *
49118641 CCATTGTATCATCTTGTAACTTGCTTAAAGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
* *
49118706 AGTACTTCTACCTA-ATATATATATGTGGCAT-GTTATTGAAGTAAGTATGTATGCTATATTATA
66 AGTAATTATACCTAGA-ATATATA--TGGC-TGGTTATTGAAGTAAGTATGTATGCTATATTATA
* *
49118769 AAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATATGTGATAATGAGAA
127 AAACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAA
* * *
49118834 TA---GG----------------------TTTT-TTCGTGCAAATAC-AACTAAGG-GACAAAGA
192 TAGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAA-CCGAACCAAGGAG-GAAAGA
* * * *
49118871 AGAGAGGAACATTTC-ACTTTAAGGGTGTAACGCCTC--AAAATTTT-TTTTAAGAAATGTTAAA
255 AGAGA-GAAAAGTTCGGCTTTAAGGGTGTAACGCC-CAAAAAATTTTGTTTT-GGAAATGTTAAA
* * * * *
49118932 ACATGTCAAGGGTGTAATGTTCGGCTTTGAAAATGTTTTTTTTTATATGAGAAACTGCCGCCTGG
317 ACATGTCAAGGGTGTAACGTTCGACTTTGAAAA--TATTTTTTTATATGAGAAAATGCCGCCTGA
* * * * * * * * * *
49118997 TACAACGATTGCACCCATTGTATCGTCTTAATATAAAAATATTATTCTTTTTATCATGAAATTAT
380 TTCGACGGTTACACCCATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGT
** * * * * *
49119062 TGCTGAAACAATTTT---AATAAAAAAAA-CT-GATACGAC-GATTTCATCTA-T-TG------T
445 TGC-GAGGCAATTTTAACAAAAAAAAAAATATATATACGACAG-TTTCACCCATTGTGTCATCTT
*
49119113 G-TATAAAATATTATTATTTTTATCATGAAACTGCTATAAAC
508 GTTATAAAATATTATTATTTTTATCATGAAACTGCTGTAAAC
* * * *
49119154 CCATTGTGTCATCTTGTAATTTGGTTAAGAATTTATAATTAGAACTTAATTTAAAGGGTTTAAAT
1 CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
* * *
49119219 ATTTATTATACCAAGAATATATAT
66 AGTAATTATACCTAGAATATATAT
49119243 ATATATGGTC
Statistics
Matches: 1853, Mismatches: 286, Indels: 211
0.79 0.12 0.09
Matches are distributed among these distances:
511 1 0.00
513 183 0.10
514 44 0.02
515 2 0.00
516 2 0.00
517 28 0.02
518 90 0.05
519 80 0.04
520 87 0.05
521 49 0.03
522 37 0.02
523 34 0.02
527 1 0.00
531 2 0.00
532 6 0.00
533 90 0.05
534 1 0.00
535 1 0.00
536 2 0.00
537 55 0.03
539 1 0.00
540 3 0.00
541 53 0.03
542 1 0.00
544 23 0.01
545 274 0.15
546 7 0.00
547 230 0.12
548 1 0.00
549 1 0.00
550 2 0.00
551 3 0.00
552 2 0.00
553 5 0.00
554 3 0.00
555 1 0.00
556 3 0.00
557 67 0.04
558 106 0.06
559 205 0.11
560 61 0.03
561 6 0.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (549 bp):
CCATTGTATCATCTTGTAATTTGCTTAAGGATTTATAATTAGAACTTAATTTAAAGGGGTTAAAT
AGTAATTATACCTAGAATATATATGGCTGGTTATTGAAGTAAGTATGTATGCTATATTATAAAAC
ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAACATAAGTGATAATGGGAATAGG
TGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCGAACCAAGGAGGAAAGAAGAGAG
AAAAGTTCGGCTTTAAGGGTGTAACGCCCAAAAAATTTTGTTTTGGAAATGTTAAAACATGTCAA
GGGTGTAACGTTCGACTTTGAAAATATTTTTTTATATGAGAAAATGCCGCCTGATTCGACGGTTA
CACCCATTCTGTCATCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCGAGGCAAT
TTTAACAAAAAAAAAAATATATATACGACAGTTTCACCCATTGTGTCATCTTGTTATAAAATATT
ATTATTTTTATCATGAAACTGCTGTAAAC
Found at i:49119335 original size:33 final size:33
Alignment explanation
Indices: 49119287--49119352 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
49119277 CGGAGTTAAA
49119287 TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
1 TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
* *
49119320 TTTTTTCATGTATTTTTAAATTGTATTTAGAAT
1 TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
49119353 ATTAAAAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.58
Consensus pattern (33 bp):
TTTTGTCATGCATTTTTAAATTGTATTTAGAAT
Found at i:49122355 original size:32 final size:32
Alignment explanation
Indices: 49122290--49122358 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
49122280 TTATGGGCCT
* * * *
49122290 ACACGCCCAGATTGGCTTTGCCCGTGTGGCCC
1 ACACGCCCAGATTGGCCTAGCCCATGTGACCC
* *
49122322 ACACGCCCAGCTTGGCCTAGTCCATGTGACCC
1 ACACGCCCAGATTGGCCTAGCCCATGTGACCC
49122354 ACACG
1 ACACG
49122359 GCCACACCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.17, C:0.39, G:0.25, T:0.19
Consensus pattern (32 bp):
ACACGCCCAGATTGGCCTAGCCCATGTGACCC
Found at i:49129389 original size:21 final size:22
Alignment explanation
Indices: 49129347--49129388 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
49129337 TTTTCATTTA
*
49129347 TTTCACATTTCTACCATAAAAT
1 TTTCACATTTCTACAATAAAAT
49129369 TTTCACATTTC-ACAAATAAA
1 TTTCACATTTCTAC-AATAAA
49129389 TCCCTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTCACATTTCTACAATAAAAT
Found at i:49133530 original size:42 final size:42
Alignment explanation
Indices: 49133440--49133589 Score: 169
Period size: 43 Copynumber: 3.6 Consensus size: 42
49133430 ACTAAGACTA
* * * *
49133440 CGTGTAACACCATATCTGGGATAAGACATCG-TATGAGATTT
1 CGTGTAAGACCATATCTGGCATATGGCATCGATATGAGATTT
**
49133481 TTTGTAAGACCATATCTGGCATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGCATATGGCATCGATATGAGATTT
* *
49133523 CGTGTAAGACCATAGCTGGGC-TATTGGCATCGATATGAGATTA
1 CGTGTAAGACCATATCT-GGCATA-TGGCATCGATATGAGATTT
* * *
49133566 CATGTAAGACCATATATGGGATAT
1 CGTGTAAGACCATATCTGGCATAT
49133590 TGTGTTGGTA
Statistics
Matches: 91, Mismatches: 14, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
41 25 0.27
42 29 0.32
43 37 0.41
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGCATATGGCATCGATATGAGATTT
Found at i:49145235 original size:17 final size:18
Alignment explanation
Indices: 49145209--49145251 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
49145199 CAACGGGTAG
*
49145209 GAGAATATAA-CAAAAAA
1 GAGAAAATAATCAAAAAA
* *
49145226 GAGAAAATAATGAAAATA
1 GAGAAAATAATCAAAAAA
49145244 GAGAAAAT
1 GAGAAAAT
49145252 GGAGAAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.67, C:0.02, G:0.16, T:0.14
Consensus pattern (18 bp):
GAGAAAATAATCAAAAAA
Found at i:49147767 original size:46 final size:44
Alignment explanation
Indices: 49147717--49147892 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 44
49147707 TGGTTGAGCA
*
49147717 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
*** * *
49147763 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
* *
49147810 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *
49147856 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49147893 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:49147873 original size:93 final size:93
Alignment explanation
Indices: 49147714--49147884 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
49147704 GGATGGTTGA
* * *
49147714 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49147779 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
49147807 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49147872 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49147885 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:49150899 original size:30 final size:30
Alignment explanation
Indices: 49150821--49150908 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
49150811 CATAGTATCG
* * *
49150821 TATCTTGGGTTTCTTTATCCTGGATCTT-TT
1 TATCTTGGATTTCTTTATTCTGGAT-TTCTC
*
49150851 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
49150881 TATCTTGGATTTCTTTATT-TGGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
49150909 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 11 0.22
30 38 0.76
31 1 0.02
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:49150907 original size:14 final size:15
Alignment explanation
Indices: 49150830--49150909 Score: 85
Period size: 15 Copynumber: 5.4 Consensus size: 15
49150820 GTATCTTGGG
*
49150830 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
49150845 TCTT-TTTATTCTGGA
1 T-TTCTTTATTCTGGA
*
49150860 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
49150875 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
49150890 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
49150904 TTTCTT
1 TTTCTT
49150910 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
14 13 0.24
15 39 0.71
16 3 0.05
ACGTcount: A:0.10, C:0.15, G:0.14, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:49153192 original size:46 final size:45
Alignment explanation
Indices: 49153142--49153317 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
49153132 TGGTTGAGCA
*
49153142 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
* *** * *
49153187 GTCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAT
* *
49153235 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T
* *
49153281 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49153318 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
Found at i:49153298 original size:93 final size:93
Alignment explanation
Indices: 49153139--49153309 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
49153129 GGATGGTTGA
* *
49153139 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
49153204 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
49153232 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACT-CCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TGCCCGAACTCGTTGAG
49153296 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
49153310 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:49157561 original size:2 final size:2
Alignment explanation
Indices: 49157554--49157579 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
49157544 TATACCAAGA
49157554 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
49157580 GGCTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49157970 original size:40 final size:40
Alignment explanation
Indices: 49157922--49158039 Score: 132
Period size: 40 Copynumber: 3.0 Consensus size: 40
49157912 TAAAAAAACG
49157922 CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
1 CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
* * * ** **
49157962 CCGCTATAGATCAAGTATTAGTGG-GCTTTTCAAAAAACG
1 CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
* *
49158001 CCGCTATA-AGTCGACCTTTAGCGGCGCTTTTTGAAAAAT
1 CCGCTATAGA-TCGAGCATTAGCGGCGCTTTTTGAAAAAT
49158040 GCCGTAAAAA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
38 1 0.02
39 28 0.46
40 32 0.52
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (40 bp):
CCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATA
Found at i:49158232 original size:40 final size:40
Alignment explanation
Indices: 49158093--49158224 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 40
49158083 GTAGCGGCAC
* * *
49158093 TAGCGGCGCTTTTTGAAAAACGCTGCTATAGATTGAGCAT
1 TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCAT
** * * * * *
49158133 TAGCAACGCTTTTTAAAAAATGCCACTATAGGTCGACCAC
1 TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCAT
* * *
49158173 TAGTGGCGCTTTTTTAAAAACGCCGCTATAGATCGAGCTT
1 TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCAT
*
49158213 TAGCGTCGCTTT
1 TAGCGGCGCTTT
49158225 ATCAAAAATG
Statistics
Matches: 70, Mismatches: 22, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (40 bp):
TAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCAT
Found at i:49158304 original size:21 final size:21
Alignment explanation
Indices: 49158279--49158319 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49158269 TAACTGGTTT
49158279 ATTTA-TATTAATTGAAATACA
1 ATTTATTATTAATT-AAATACA
*
49158300 ATTTATTTTTAATTAAATAC
1 ATTTATTATTAATTAAATAC
49158320 TTAAATTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTATTATTAATTAAATACA
Found at i:49158494 original size:14 final size:14
Alignment explanation
Indices: 49158475--49158524 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
49158465 TTAATTATCA
49158475 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
49158489 TTATAGTTTAGGAT
1 TTATAGTTTAGGGT
* *
49158503 GTATGGTTTAGGGT
1 TTATAGTTTAGGGT
49158517 TTA-AGTTT
1 TTATAGTTT
49158525 TAAAAGTTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 4 0.13
14 26 0.87
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:49158600 original size:14 final size:15
Alignment explanation
Indices: 49158583--49158615 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
49158573 TATGGTTTAT
49158583 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
49158597 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
49158612 GGTT
1 GGTT
49158616 ATATATGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:49158600 original size:21 final size:21
Alignment explanation
Indices: 49158576--49158615 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
49158566 TAGAGATTAT
*
49158576 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGTTTAAGGGTTGG
*
49158597 GGTTTAAGGTTTAGGGGTT
1 GGTTTAAGGTTTAAGGGTT
49158616 ATATATGGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGG
Found at i:49159068 original size:21 final size:21
Alignment explanation
Indices: 49159042--49159086 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
49159032 AGGGAGTAAA
49159042 TTTATGGTATAAGATTTAGGG
1 TTTATGGTATAAGATTTAGGG
* * *
49159063 TTTATGGTCTAGGATTTGGGG
1 TTTATGGTATAAGATTTAGGG
49159084 TTT
1 TTT
49159087 GGTGTTTGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (21 bp):
TTTATGGTATAAGATTTAGGG
Found at i:49164099 original size:43 final size:43
Alignment explanation
Indices: 49164038--49164152 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
49164028 AATATATATT
* *
49164038 TTTAAAGGTCATGTTCTTTAGTGGAGTTTATGGGAAAAGAGTC
1 TTTAAAGGTCATGTTCTTTAGCGGAGTTTATCGGAAAAGAGTC
* * * *
49164081 TTTAAAGGTTATGTTCTTTAGCGGCGTTTGTCGGAAAAGCGTC
1 TTTAAAGGTCATGTTCTTTAGCGGAGTTTATCGGAAAAGAGTC
** * * *
49164124 GCTAAAGATCATGTTCTATAGCGGCGTTT
1 TTTAAAGGTCATGTTCTTTAGCGGAGTTT
49164153 TTTTACATAA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (43 bp):
TTTAAAGGTCATGTTCTTTAGCGGAGTTTATCGGAAAAGAGTC
Found at i:49165154 original size:490 final size:490
Alignment explanation
Indices: 49164397--49165377 Score: 1382
Period size: 490 Copynumber: 2.0 Consensus size: 490
49164387 GCTGTAAACC
* * *
49164397 CATTGTGCCATCTTGTAATTTCTTAAGGATTGATAATTAGAACTTAATTTAAAGGGGTTAAATAG
1 CATTGTGCCACCTTGTAATTTCTTAAGAATTGATAATTAGAACTTAATTTAAAGGGGCTAAATAG
*
49164462 TAATTATACATAGAATATATATCATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACAT
66 TAATTATACATAGAAAATATATCATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACAT
* *
49164527 TATTAATTAAAATTATAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTC
131 TAGTAATTAAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTC
* * * * *
49164592 GCAAAAACAAAAGCATTTTCATCTTTTCTTCAAGCAAATAGAACCAATGGATAAAGAAGAGAGGA
196 GCAAAAACAAAAACATTTCCATCTTTTCTTCAAGCAAACAGAACCAAGGGATAAAGAAGAAAGGA
* *
49164657 GCGTTCGGCTTTAAGGGTGTAACGCCCCAAAAATTTTTATTTTTGGAATTGTTAAAACATGTCAA
261 GCGTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTATTCTTGGAATTGTTAAAACATGTCAA
* * * *
49164722 GGGTGTAACGTTCGACTTTGAAAATAGTTTTTTATATGAGAAACTGCCACCTGATACGATGGTTT
326 GGGTGTAACATTCGACTTCGAAAATAGTTTTTTATATGAGAAACTGCCACATGATACGATGGTTA
* * ** *
49164787 CACCCATTGTGTTG-TCTTAATATAAAAATATTATTATTTTTATCATGAAATTATTGCGGAGGCA
391 CACCCACTGTGTCGTTC-TAATATAAAAATATTATTATTTTTATCATGAAATTATTGCAAAGGAA
* *
49164851 ATTTTAAC-CAAAAAAACTGATATGACGGTTTCACT
455 ATTTTAACAAAAAAAAACTGATACGACGGTTTCACT
* * * *
49164886 CATTGTGTCACCTTGTAATTTGCTTAAGAATTTATAATTAGATCTTACTTTAAAGGGGCTAAATA
1 CATTGTGCCACCTTGTAATTT-CTTAAGAATTGATAATTAGAACTTAATTTAAAGGGGCTAAATA
* * *
49164951 GTAATTATACCTAGAAAATATATGGC-T-GGTTATTGAAGTAAGTATGTATGTTATATTATAAAA
65 GTAATTATACATAGAAAATATAT--CATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAA
* * *
49165014 CGTTAGTCATTAAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATTATGGGAATAG
128 CATTAGTAATTAAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAG
* * ** * *
49165079 GTGGCAAAAACAAAAAACATTTCCATCTTTTTTTCGTGCAAACCGAACTAAGGGA-AATA-ATAG
193 GTCGCAAAAAC-AAAAACATTTCCATCTTTTCTTCAAGCAAACAGAACCAAGGGATAA-AGA-AG
*
49165142 AAAGGA-CGTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACA
255 AAAGGAGCGTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTATTCTTGGAATTGTTAAAACA
* * * ** *
49165206 TGTCAAGGGTGTAACATTTGGCTTCGAAAATATTTTTTTATATGAGAATTTGCCGCATGATACGA
320 TGTCAAGGGTGTAACATTCGACTTCGAAAATAGTTTTTTATATGAGAAACTGCCACATGATACGA
* *
49165271 TGGTTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAA
385 TGGTTACACCCACTGTGTCGTTCTAATATAAAAATATTATTATTTTTATCATGAAATTATTGCAA
*
49165336 ATGAAATTTTAACAATAAAAAAAACTGATACGACGGTTTCAC
450 AGGAAATTTTAAC-A-AAAAAAAACTGATACGACGGTTTCAC
49165378 CAATTATGTC
Statistics
Matches: 432, Mismatches: 50, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
489 19 0.04
490 343 0.79
491 45 0.10
492 1 0.00
493 24 0.06
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (490 bp):
CATTGTGCCACCTTGTAATTTCTTAAGAATTGATAATTAGAACTTAATTTAAAGGGGCTAAATAG
TAATTATACATAGAAAATATATCATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACAT
TAGTAATTAAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTC
GCAAAAACAAAAACATTTCCATCTTTTCTTCAAGCAAACAGAACCAAGGGATAAAGAAGAAAGGA
GCGTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTATTCTTGGAATTGTTAAAACATGTCAA
GGGTGTAACATTCGACTTCGAAAATAGTTTTTTATATGAGAAACTGCCACATGATACGATGGTTA
CACCCACTGTGTCGTTCTAATATAAAAATATTATTATTTTTATCATGAAATTATTGCAAAGGAAA
TTTTAACAAAAAAAAACTGATACGACGGTTTCACT
Found at i:49166188 original size:553 final size:547
Alignment explanation
Indices: 49164886--49166346 Score: 1685
Period size: 548 Copynumber: 2.7 Consensus size: 547
49164876 CGGTTTCACT
** * * * *
49164886 CATTGTGTCACCTTGTAATTTGCTTAAGAATTTATAATTAGATCTTACTTTAAAGGGGCTAAATA
1 CATTGTGTCGTCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGAGGTTAAATA
* *
49164951 GTAATTATACCTAGAA-A-ATATATGGCTGGTTATTGAAGTAAGTATGTATGTTATATTATAAAA
66 GTAATTATACCTAGAATATATATATGGCAGGTTATTGAAG-AAGTATGTATGTTATATTAAAAAA
* * * * * * *
49165014 CGTTAGTCATTAAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATTATGGGAATAG
130 CATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAATAG
* * * *
49165079 GTGGCAAAAACAAAAAACATTTCCATCTTTTTTTCGTGCAAACCGAACTAAGGGAAATAATAGAA
195 GTGGCAAAAAC-AAAAACATTTCCATCTTTTCTTCGTGCAAACCAAACCAAGGGAAATAAGAG-A
* * *
49165144 AGGACGTTCGGCTTTAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACATGT
258 AGAACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATTGGAA-TGTTAAAACATGT
* * * * * *
49165209 CAAGGGTGTAACATTTGGCTTCGAAAATATTTTTTTATATGAGAATTTGCCGCATGATACGATGG
322 CAAGGGTGTAACATTCGGCTT-AAAAATATTTTTATATATGAGAACTTGCCGCATGATACAACGG
*
49165274 TTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAAATG
386 TTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAAAGG
* * * *
49165339 AAATTTTAACAATAAAAAAAACTGATACGACGGTTTCACCAATTATGTCATTTTGTTATAAAATA
451 AAATTTAAACAATAAAAAAAACTGATACGACGATTTCACCAATTATGTCATCTTGTCATAAAATA
* *
49165404 TTATTATTTTTATCATGTAACTGCTTTAAACC
516 TTATCATTTTTATCATGAAACTGCTTTAAACC
* * * * * * * *
49165436 TA-T-TGTCGTCTTATAATTTACTTAAGGATTTAAAATTAGAATTTAACTTAAA-AGGGTTGAAT
1 CATTGTGTCGTCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGA-GGTTAAAT
* * * * *
49165498 AG-ACCTTCTACCTAGAATAT-T-TATGGCAGATTATT---GAAGTATGCATGCTATATTAAAAA
65 AGTA-ATTATACCTAGAATATATATATGGCAGGTTATTGAAGAAGTATGTATGTTATATT-AAAA
* * *
49165557 AACATTAGTAATTAAAATTATAAAATGAAAACTTAATTAAATAAAAAATAAGTAATAATGGAAAT
128 AACATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAAT
* * * *
49165622 AGGTGGCAAAAACAAAAATATTTTCATCTTTTCTTCGTGCAAATCAAACCAAGTAAGAAATAAGA
193 AGGTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCAAACCAAG--GGAAATAAGA
* * * * * * *
49165687 GATGAAGGTTCGGTTTTAATGGTGTAACGCCACAAAAATTTTTGTT-TTCGGATATGTTAAAAGA
256 GAAGAACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATT-GGA-ATGTTAAAACA
* * * *
49165751 TGTCAAGGGTGTAACCTTCGGCTTAAAAATATATATATATATATATGAGAACTTGTCGCTTGATT
319 TGTCAAGGGTGTAACATTCGGCTTAAAAATAT-T-T-T-TATATATGAGAACTTGCCGCATGATA
* * *
49165816 CAACGGTTTCACCCATTGTGTTG-TCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTT
380 CAACGGTTACACCCACTGTGTCGTTC-TATTATAAAAATATTATTATTTTTATCATGAAATTGTT
*** * ** * * * *
49165880 GTGGAGGCAATTTAAAC-A-AAAAAAATTTGATACGACTATTTTACCCATTGTGTCATCTTGTCA
444 GCAAAGGAAATTTAAACAATAAAAAAAACTGATACGACGATTTCACCAATTATGTCATCTTGTCA
*
49165943 TAAAATATTATCATTTTTATCATGAAAGTG-TTGTAAACC
509 TAAAATATTATCATTTTTATCATGAAACTGCTT-TAAACC
*
49165982 CATTGTGTCGTCTTGTAATTTGCTTAAGAATGTATAATTAGAACTTAATTTAAAGAGGTTAAATA
1 CATTGTGTCGTCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGAGGTTAAATA
* * * * *
49166047 GTAATTATATCAAGAATATATATATAGCGGGCTATTGAAGCAAGTATGTATGTTATATTAAAAAA
66 GTAATTATACCTAGAATATATATATGGCAGGTTATTGAAG-AAGTATGTATGTTATATTAAAAAA
* *
49166112 CATTAGTAATTGAAATTATAAAATGAAAATTTAATTAAATAGAATATAAGTAATAATGGGAATAG
130 CATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAATAG
* * * *
49166177 GTGGAAAAAACAAAAACATATCCATTTTTTCTTCGTGCAAACCAAACCAAGGGGGAAAGAAGAGA
195 GTGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCAAACCAA--GGGAAATAAGAGA
* ** * * *
49166242 GGAATATTCGGCTTTAAAGGAGTAACACCCCAAAATTTTTTGTTATTGGAAATGTTAAAATATGT
258 AGAACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATTGG-AATGTTAAAACATGT
* * * *
49166307 CAAAGATGTAATATTCGGCTTTAAAAATATTTTTTTATAT
322 CAAGGGTGTAACATTCGGC-TTAAAAATATTTTTATATAT
49166347 AAAAAACTGT
Statistics
Matches: 756, Mismatches: 125, Indels: 60
0.80 0.13 0.06
Matches are distributed among these distances:
544 59 0.08
545 147 0.19
546 81 0.11
547 6 0.01
548 221 0.29
549 6 0.01
550 17 0.02
551 1 0.00
552 1 0.00
553 187 0.25
554 29 0.04
555 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (547 bp):
CATTGTGTCGTCTTGTAATTTGCTTAAGAATTTATAATTAGAACTTAATTTAAAGAGGTTAAATA
GTAATTATACCTAGAATATATATATGGCAGGTTATTGAAGAAGTATGTATGTTATATTAAAAAAC
ATTAGTAATTAAAATTATAAAATGAAAATTTAATTAAATAGAAAATAAGTAATAATGGGAATAGG
TGGCAAAAACAAAAACATTTCCATCTTTTCTTCGTGCAAACCAAACCAAGGGAAATAAGAGAAGA
ACGTTCGGCTTTAAAGGTGTAACACCCCAAAAATTTTTGTTATTGGAATGTTAAAACATGTCAAG
GGTGTAACATTCGGCTTAAAAATATTTTTATATATGAGAACTTGCCGCATGATACAACGGTTACA
CCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAAAGGAAATT
TAAACAATAAAAAAAACTGATACGACGATTTCACCAATTATGTCATCTTGTCATAAAATATTATC
ATTTTTATCATGAAACTGCTTTAAACC
Found at i:49170308 original size:23 final size:23
Alignment explanation
Indices: 49170282--49170326 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
49170272 ACAAACATCG
49170282 ATGCATAACAAATACAGATTCAT
1 ATGCATAACAAATACAGATTCAT
* **
49170305 ATGCATATCAGTTACAGATTCA
1 ATGCATAACAAATACAGATTCA
49170327 GATCCTACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (23 bp):
ATGCATAACAAATACAGATTCAT
Found at i:49170765 original size:30 final size:30
Alignment explanation
Indices: 49170709--49170765 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
49170699 TGGGTATTTT
* * * *
49170709 CACACGGGCTGGGCACATGCCTATGTGAAC
1 CACACGGGCTAGCCACACGCCCATGTGAAC
49170739 CACACGGGCTAGCCACACGCCCATGTG
1 CACACGGGCTAGCCACACGCCCATGTG
49170766 CCAGCCCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.23, C:0.35, G:0.28, T:0.14
Consensus pattern (30 bp):
CACACGGGCTAGCCACACGCCCATGTGAAC
Found at i:49171619 original size:32 final size:32
Alignment explanation
Indices: 49171578--49171640 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
49171568 TGTCCTTAGT
49171578 AATTAGTTTAGTTAATTATAGATTAAAAATCA
1 AATTAGTTTAGTTAATTATAGATTAAAAATCA
49171610 AATTAGTTTAGTTAATTATAGATTAAAAATC
1 AATTAGTTTAGTTAATTATAGATTAAAAATC
49171641 CATCTCATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (32 bp):
AATTAGTTTAGTTAATTATAGATTAAAAATCA
Found at i:49174488 original size:29 final size:31
Alignment explanation
Indices: 49174414--49174488 Score: 104
Period size: 30 Copynumber: 2.5 Consensus size: 31
49174404 GTCATGAGAT
*
49174414 TGGCACTAAGTGTGCGGGTTTAAATTGTAACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTAACA
49174446 --GCACTAAGTGTGCGAGTTTAAA-GT-ACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTAACA
49174473 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49174489 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 3 0.08
28 2 0.05
29 14 0.35
30 21 0.52
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (31 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTAACA
Found at i:49174736 original size:174 final size:174
Alignment explanation
Indices: 49174446--49174774 Score: 536
Period size: 174 Copynumber: 1.9 Consensus size: 174
49174436 AATTGTAACA
* *
49174446 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
49174511 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
49174576 TTTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATG
130 TTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
49174620 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
49174685 TGTGC-ACCCAAATATATATTTCTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
66 TGTGCAACCC-AATATATATTT-TATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCA
49174749 ATTTTGGACAGCGGAAAAAGGTAAGT
129 ATTTTGGACAGCGGAAAAAGGTAAGT
49174775 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
172 4 0.03
173 11 0.08
174 117 0.82
175 11 0.08
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
TTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:49182620 original size:29 final size:28
Alignment explanation
Indices: 49182585--49182662 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
49182575 TCATGAGATT
49182585 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
49182615 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
49182642 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
49182663 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:49182931 original size:173 final size:174
Alignment explanation
Indices: 49182615--49182941 Score: 557
Period size: 173 Copynumber: 1.9 Consensus size: 174
49182605 AAATTGTACA
* *
49182615 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * * *
49182680 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACATTACCGAGTCAA
49182745 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
49182789 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
49182854 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACATTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACATTACCGAGTCAA
49182918 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
49182942 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
173 79 0.55
174 64 0.45
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACATTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:49190628 original size:43 final size:43
Alignment explanation
Indices: 49190579--49190666 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
49190569 AAAACCTATG
49190579 ATAGATCTTGTTATTATTATCTGAACTGTATGATAAATACTTA
1 ATAGATCTTGTTATTATTATCTGAACTGTATGATAAATACTTA
49190622 ATAGATCTTGTTATTATTATCTGAACTGTATGATAAATACTTA
1 ATAGATCTTGTTATTATTATCTGAACTGTATGATAAATACTTA
49190665 AT
1 AT
49190667 TTGTTCTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.44
Consensus pattern (43 bp):
ATAGATCTTGTTATTATTATCTGAACTGTATGATAAATACTTA
Found at i:49196452 original size:6 final size:6
Alignment explanation
Indices: 49196427--49196477 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
49196417 ATCTTCCTAT
* * *
49196427 TTTTTA TTATTTA TTCTTA TTTTTA -TTTTA TTTATA TTTTTA TTTTCA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
49196475 TTT
1 TTT
49196478 CAATTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
5 5 0.13
6 27 0.71
7 6 0.16
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:49196458 original size:17 final size:17
Alignment explanation
Indices: 49196444--49196496 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 17
49196434 TATTTATTCT
49196444 TATTTTTATTTTATTTA
1 TATTTTTATTTTATTTA
49196461 TATTTTTATTTTCATTTCA
1 TATTTTTATTTT-ATTT-A
49196480 -ATTTTATTATTTTATTT
1 TA-TTT-TTATTTTATTT
49196497 TGAAAGACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 12 0.38
18 5 0.16
19 8 0.25
20 7 0.22
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (17 bp):
TATTTTTATTTTATTTA
Found at i:49196464 original size:23 final size:24
Alignment explanation
Indices: 49196428--49196477 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
49196418 TCTTCCTATT
* *
49196428 TTTTATTATTTATTCTTATTTTTA
1 TTTTATTATATATTCTTATTTTCA
*
49196452 TTTTATT-TATATTTTTATTTTCA
1 TTTTATTATATATTCTTATTTTCA
49196475 TTT
1 TTT
49196478 CAATTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTATTATATATTCTTATTTTCA
Found at i:49196470 original size:29 final size:30
Alignment explanation
Indices: 49196431--49196496 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
49196421 TCCTATTTTT
**
49196431 TATTATTTATTCTT-ATTTTTATTTTATTTA
1 TATTATTTATT-TTCATTTCAATTTTATTTA
49196461 TATT-TTTATTTTCATTTCAATTTTA-TTA
1 TATTATTTATTTTCATTTCAATTTTATTTA
*
49196489 TTTTATTT
1 TATTATTT
49196497 TGAAAGACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 8 0.26
29 19 0.61
30 4 0.13
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (30 bp):
TATTATTTATTTTCATTTCAATTTTATTTA
Found at i:49201874 original size:46 final size:48
Alignment explanation
Indices: 49201725--49201994 Score: 244
Period size: 46 Copynumber: 5.8 Consensus size: 48
49201715 CACTTGTGTG
* *
49201725 AGCTAGTGTAAGA-CAT-TCTGGGACAT-GCATCGGCC-ACATTATGTA
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGA-GATGTA
* * * *
49201770 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGACG-A
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAGATGTA
*
49201817 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGTA
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAGATGTA
* *
49201864 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTACGAGATGT-
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTA-GAGATGTA
* * * * *
49201909 -G-TCAGTGTAAGACCATGTTTGGGACATGGCATGGGAAC-AGATATATGA
1 AGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGG-CCTAGAGATGT-A
*
49201957 GAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGC
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
49201995 ATCTTACCCC
Statistics
Matches: 185, Mismatches: 23, Indels: 30
0.78 0.10 0.13
Matches are distributed among these distances:
44 10 0.05
45 28 0.15
46 65 0.35
47 27 0.15
48 23 0.12
49 1 0.01
50 30 0.16
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGAGATGTA
Found at i:49203451 original size:12 final size:12
Alignment explanation
Indices: 49203424--49203467 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
49203414 AGTCCATTTA
* *
49203424 TTTTATTTTTAG
1 TTTTATTTCTAT
49203436 TTTTATTTCTAT
1 TTTTATTTCTAT
*
49203448 TTTTATGTCTAT
1 TTTTATTTCTAT
*
49203460 TGTTATTT
1 TTTTATTT
49203468 TCTTAAACTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.73
Consensus pattern (12 bp):
TTTTATTTCTAT
Found at i:49203460 original size:18 final size:17
Alignment explanation
Indices: 49203422--49203468 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
49203412 TGAGTCCATT
*
49203422 TATTTTATTTTTAGTTT
1 TATTTTATTTTTAGTTC
49203439 TATTTCTATTTTTA-TGTC
1 TATTT-TATTTTTAGT-TC
49203457 TATTGTTATTTT
1 TATT-TTATTTT
49203469 CTTAAACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.23
18 19 0.73
19 1 0.04
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.72
Consensus pattern (17 bp):
TATTTTATTTTTAGTTC
Found at i:49206823 original size:13 final size:13
Alignment explanation
Indices: 49206805--49206829 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49206795 TCCCATACTT
49206805 ATACACATTATAG
1 ATACACATTATAG
49206818 ATACACATTATA
1 ATACACATTATA
49206830 ACATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
ATACACATTATAG
Found at i:49208483 original size:50 final size:50
Alignment explanation
Indices: 49208326--49208639 Score: 301
Period size: 50 Copynumber: 6.3 Consensus size: 50
49208316 ATTTGGTATG
* * * **
49208326 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTA
1 CTACACACGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
* ** * * ** *
49208376 CTACACACATGATCGAAGT-AAACAGGTATGCATAGTAGCCTGCACTTAGTA
1 CTACACACGTGA-CCTA-TCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
*
49208427 CTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
1 CTACACACGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
* * * * * *
49208477 CTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTACACTTAGTA
1 CTACACACGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
** * * * *
49208527 CTACACACGTGATCGAAGTTAA--GGGTACGCATAGTAGCCTGCACTTAGTA
1 CTACACACGTGA-CCTA-TCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
* * * *
49208577 CTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCATTTAGTA
1 CTACACACGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
49208627 CTACACACGTGAC
1 CTACACACGTGAC
49208640 TCACAACGAA
Statistics
Matches: 207, Mismatches: 50, Indels: 14
0.76 0.18 0.05
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 162 0.78
51 38 0.18
52 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
CTACACACGTGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
Found at i:49208625 original size:150 final size:151
Alignment explanation
Indices: 49208326--49208640 Score: 533
Period size: 150 Copynumber: 2.1 Consensus size: 151
49208316 ATTTGGTATG
*
49208326 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCG
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCG
* * *
49208391 AAGTAAACAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
66 AAGTAAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
49208456 CGTAGTAGCCTGCACTTAGTA
131 CGTAGTAGCCTGCACTTAGTA
* * *
49208477 CTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCG
1 CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCG
* *
49208542 AAGTTAA-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
66 AAGTAAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
*
49208606 CGTAGTAGCCTGCATTTAGTA
131 CGTAGTAGCCTGCACTTAGTA
49208627 CTACACACGTGACT
1 CTACACACGTGACT
49208641 CACAACGAAT
Statistics
Matches: 154, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
150 87 0.56
151 67 0.44
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (151 bp):
CTACACACGTGACTTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTACACACATGATCG
AAGTAAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACA
CGTAGTAGCCTGCACTTAGTA
Found at i:49209240 original size:30 final size:30
Alignment explanation
Indices: 49209196--49209254 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
49209186 CAAAAATCAT
* *
49209196 ACTTTTACAAATTTGCATTTTGACCCCTAA
1 ACTTTCACAAATTTGCACTTTGACCCCTAA
* *
49209226 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTGCACTTTGACCCCTA
49209255 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.08, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTGCACTTTGACCCCTAA
Found at i:49211569 original size:15 final size:15
Alignment explanation
Indices: 49211549--49211587 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
49211539 AACCAAGATC
49211549 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
49211564 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
49211579 TCCAAGATA
1 TCCAAGATA
49211588 CAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:49231499 original size:50 final size:50
Alignment explanation
Indices: 49231434--49231822 Score: 372
Period size: 50 Copynumber: 7.7 Consensus size: 50
49231424 ACCGAAGCTC
* * *
49231434 TCTGGTACGCATAGTAGCCTACACTTAGCACTACACATACGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * * *
49231484 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * ** *
49231534 TCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGAACGAAGTTAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCG-ACCTA-TCAA
* *
49231586 -CAT-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TC-TGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * * * * *
49231635 TCTAGTACACGTAGTAGCCTACACTTAGTACTACACATGTGGCTTAACTA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * * *
49231685 TCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGA-TTGAAGTTAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCT--A-TCAA
* ** *
49231737 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
* * * *
49231786 TCTAGTCCACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACA
49231823 CGTGACTCAC
Statistics
Matches: 274, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
49 9 0.03
50 190 0.69
51 71 0.26
52 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
Found at i:49231700 original size:151 final size:151
Alignment explanation
Indices: 49231437--49231829 Score: 660
Period size: 151 Copynumber: 2.6 Consensus size: 151
49231427 GAAGCTCTCT
* * * *
49231437 GGTACGCATAGTAGCCTACACTTAGCACTACACATACGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
49231502 CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
66 CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
49231567 CACACGTGAACGAAGTTAACA
131 CACACGTGAACGAAGTTAACA
*
49231588 TGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* *
49231653 CTACACTTAGTACTACACATGTGGCTTAACTATCTGATACACATAGTAGCCTACACTTAGTACTA
66 CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
** *
49231718 CACACGTGATTGAAGTTAACG
131 CACACGTGAACGAAGTTAACA
* *
49231739 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTCCACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
* *
49231804 CTGCACTTAGTACTACACACGTGACT
66 CTACACTTAGTACTACACATGTGACT
49231830 CACAACGAAT
Statistics
Matches: 226, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 226 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGC
CTACACTTAGTACTACACATGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
CACACGTGAACGAAGTTAACA
Found at i:49231751 original size:101 final size:100
Alignment explanation
Indices: 49231435--49231829 Score: 377
Period size: 101 Copynumber: 3.9 Consensus size: 100
49231425 CCGAAGCTCT
* * * * * *
49231435 CTGGTACGCATAGTAGCCTACACTTAGCACTACACATACGACCTATCAATCTGGTACACGTAGTA
1 CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTA
* * *
49231500 GCCTACACTTAGTACTACACATGTGACTTAACCAT
66 GCCTACACTTAGTACTACACACGTGACTTAATCAA
* * * * * * *
49231535 CTGATACACATAGTAGCCTACACTTAGTACTACACACGTGAACGAAGTTAA-CATG-TACGCATA
1 CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAA--CAATC-TGATACACATA
* * * *
49231598 GTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAA
63 GTAGCCTACACTTAGTACTACACACGTGACTTAATCAA
* * * * * *
49231635 TCTAGTACACGTAGTAGCCTACACTTAGTACTACACATGTGGCTTAACTATCTGATACACATAGT
1 -CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGT
*
49231700 AGCCTACACTTAGTACTACACACGTGA-TTGAAGTTAA
65 AGCCTACACTTAGTACTACACACGTGACTT-AA-TCAA
* ** * * * *
49231737 CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT-AGTCCACGTAGT
1 CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGA-TACACATAGT
*
49231801 AGCCTGCACTTAGTACTACACACGTGACT
65 AGCCTACACTTAGTACTACACACGTGACT
49231830 CACAACGAAT
Statistics
Matches: 237, Mismatches: 47, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
99 4 0.02
100 75 0.32
101 150 0.63
102 8 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (100 bp):
CTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGATACACATAGTA
GCCTACACTTAGTACTACACACGTGACTTAATCAA
Found at i:49232205 original size:19 final size:20
Alignment explanation
Indices: 49232177--49232223 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
49232167 AAGAACATGT
49232177 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
49232198 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
49232217 TATATAT
1 TATATAT
49232224 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:49236832 original size:17 final size:18
Alignment explanation
Indices: 49236812--49236856 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
49236802 AATAACTAAG
49236812 ATAAATAACA-TAGAACA
1 ATAAATAACAGTAGAACA
*
49236829 ATAAATTAAATAGTAGAACA
1 ATAAA-T-AACAGTAGAACA
49236849 ATAAATAA
1 ATAAATAA
49236857 GAAAATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 5 0.21
18 3 0.12
19 4 0.17
20 12 0.50
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.22
Consensus pattern (18 bp):
ATAAATAACAGTAGAACA
Found at i:49241097 original size:33 final size:33
Alignment explanation
Indices: 49241060--49241137 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
49241050 TGGCCTTGCC
** * *
49241060 ATGGTCTTACATTCGTAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCAAAATGCCATAACCCAGTA
* *
49241093 ATGGTCTTATCA-TCAAAATTCCATAGCCCAGTA
1 ATGGTCTTA-CATTCAAAATGCCATAACCCAGTA
49241126 ATGGTCTTACAT
1 ATGGTCTTACAT
49241138 ATAAACACTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
32 2 0.05
33 33 0.89
34 2 0.05
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (33 bp):
ATGGTCTTACATTCAAAATGCCATAACCCAGTA
Found at i:49243983 original size:31 final size:31
Alignment explanation
Indices: 49243942--49244000 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
49243932 AAGCAGGTCT
49243942 AAAACATTTAATCATTTAAATTCCATCATTA
1 AAAACATTTAATCATTTAAATTCCATCATTA
*
49243973 AAAACGTTTAATCATTTAAATTCCATCA
1 AAAACATTTAATCATTTAAATTCCATCA
49244001 GTAAGTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (31 bp):
AAAACATTTAATCATTTAAATTCCATCATTA
Found at i:49249811 original size:12 final size:12
Alignment explanation
Indices: 49249794--49249819 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
49249784 CAGGTAAAAC
49249794 TCAATTCCAAAT
1 TCAATTCCAAAT
49249806 TCAATTCCAAAT
1 TCAATTCCAAAT
49249818 TC
1 TC
49249820 TACCTCTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.35
Consensus pattern (12 bp):
TCAATTCCAAAT
Found at i:49258836 original size:21 final size:20
Alignment explanation
Indices: 49258812--49258851 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
49258802 CATATATTTT
49258812 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
49258833 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
49258852 ATAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:49258859 original size:20 final size:21
Alignment explanation
Indices: 49258817--49258859 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
49258807 ATTTTAATGA
*
49258817 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
49258838 TTGATGATAG-TTAT-ATAAGT
1 TTGATGATAGATTATGA-AAGT
49258858 TT
1 TT
49258860 TGTTATGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:49262318 original size:40 final size:40
Alignment explanation
Indices: 49262268--49262374 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 40
49262258 TTCGGGCGAG
* **
49262268 CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGTTTAAGT
1 CCCGAAGGCATTTGTACGAGTTACTATAA-CCGGGCTAAGT
*
49262308 CCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTATGT
1 CCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGT
* *
49262348 CCCGAAGGCATTTGAACGA-TAACTATA
1 CCCGAAGGCATTTGTACGAGTTACTATA
49262375 TCGCGTTAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 7 0.12
40 51 0.85
41 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (40 bp):
CCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGT
Found at i:49262751 original size:47 final size:47
Alignment explanation
Indices: 49262583--49263032 Score: 787
Period size: 47 Copynumber: 9.6 Consensus size: 47
49262573 AAAGGTTGGT
49262583 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
49262630 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
49262679 AAT-TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49262725 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49262772 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49262819 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49262866 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
49262913 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTTG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
49262960 AATGTGAAA-TGTATATATGTGACAGGGCCTAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
49263006 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
49263033 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 76 0.20
47 265 0.69
48 8 0.02
49 37 0.10
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:49263206 original size:37 final size:37
Alignment explanation
Indices: 49263150--49263228 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49263140 CCGAGCTCTA
* * *
49263150 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49263187 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49263224 AAGAC
1 AAGAC
49263229 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49268949 original size:46 final size:44
Alignment explanation
Indices: 49268882--49269053 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 44
49268872 CATGTAACCG
*
49268882 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAAC-AGTTCGGGCGTT-GCAT
* *
49268928 CCATAAGTGAACTCGGACTCAACTCAACAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACAGTTCGG--G-C--GTTGCAT
* * *
49268977 -C-TCA-CGAACTCGGACTCAAC-CAACAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACAGTTCGGGC-GTTGCAT
*
49269018 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAAC-AGTTCGG
49269054 ATGCTCATCA
Statistics
Matches: 106, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
41 6 0.06
42 2 0.02
43 2 0.02
44 15 0.14
45 21 0.20
46 49 0.46
47 3 0.03
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGCGAACTCGGACTCAACTCAACAGTTCGGGCGTTGCAT
Found at i:49269044 original size:90 final size:93
Alignment explanation
Indices: 49268889--49269057 Score: 281
Period size: 90 Copynumber: 1.8 Consensus size: 93
49268879 CCGCCATAAG
* *
49268889 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
49268954 AC-AGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
49268981 CGAACTCGGACTCAAC-CAAC-AGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
49269044 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
49269058 TCATCATCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
90 41 0.57
91 15 0.21
92 16 0.22
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:49276046 original size:93 final size:93
Alignment explanation
Indices: 49275938--49276109 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
49275928 CGCCCATAAT
* *
49275938 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
49276002 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
49276031 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
49276096 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
49276110 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:49276104 original size:46 final size:44
Alignment explanation
Indices: 49275931--49276106 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 44
49275921 TGTAACCCGC
* *
49275931 CCATAATCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGCAT
1 CCATAAT-GAACTCGGACTCAACTCAACGAGTTC-GGAC-ATTGCAT
*
49275977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAA-TGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCAT
* *
49276027 -C-TCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCAT
49276070 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAA-TGAACTCGGACTCAACTCAACGAGTTCGGA
49276107 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.54
47 30 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAATGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
Found at i:49276125 original size:46 final size:46
Alignment explanation
Indices: 49275939--49276125 Score: 156
Period size: 46 Copynumber: 4.0 Consensus size: 46
49275929 GCCCATAATC
* * *
49275939 GAACTCGGACTCAACTCAACGAGCTC--AGGCGT-TTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAT-CATCC-TAAGT
* *
49275985 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT-CTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A--T-CATCCTAAGT
*** *
49276032 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCC-TAAGT
49276078 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAATCATCCT-AGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ATCATCCTAAGT
49276124 GA
1 GA
49276126 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.54
47 30 0.27
48 11 0.10
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCATCATCCTAAGT
Found at i:49284985 original size:114 final size:114
Alignment explanation
Indices: 49284843--49285070 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
49284833 CATGCATGCA
49284843 TATATGAATAGGATTACATCCCCATAATTAATATGAGCCATATCTCATGGTCATATACAAAATGA
1 TATATGAATAGGATTACATCCCCATAATTAATATGAGCCATATCTCATGGTCATATACAAAATGA
*
49284908 ATCATCAAATTATTATAAGCCAACACATTTGGCTATACAAATATGACAT
66 ATCATCAAATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
49284957 TATATGAATAGGATTACATCCCCATAATTAATATGAGCCATATCTCATGGTCATATACAAAATGA
1 TATATGAATAGGATTACATCCCCATAATTAATATGAGCCATATCTCATGGTCATATACAAAATGA
*
49285022 ATCATCACATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
66 ATCATCAAATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
49285071 ATAACAAAAA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (114 bp):
TATATGAATAGGATTACATCCCCATAATTAATATGAGCCATATCTCATGGTCATATACAAAATGA
ATCATCAAATCATTATAAGCCAACACATTTGGCTATACAAATATGACAT
Found at i:49293216 original size:13 final size:13
Alignment explanation
Indices: 49293198--49293256 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
49293188 TAGTTTGACC
49293198 AATTGATTCTAAT
1 AATTGATTCTAAT
*
49293211 AATTGATTCTATT
1 AATTGATTCTAAT
* *
49293224 AACT-AGTT-TGACT
1 AATTGA-TTCT-AAT
49293237 AATTGATTCTAAT
1 AATTGATTCTAAT
*
49293250 AACTGAT
1 AATTGAT
49293257 ATTATGATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
12 2 0.06
13 32 0.89
14 2 0.06
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (13 bp):
AATTGATTCTAAT
Found at i:49296742 original size:26 final size:25
Alignment explanation
Indices: 49296667--49296743 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 25
49296657 TTAGGAAGTT
49296667 CAAACGAGCC-ATATCGAGAAGCTCA
1 CAAA-GAGCCTATATCGAGAAGCTCA
*
49296692 CAAAGAGCCTTTAATC-AGGAAGCTCA
1 CAAAGAGCCTAT-ATCGA-GAAGCTCA
* *
49296718 CGAAGAGCCATATATCGAGACGCTCA
1 CAAAGAGCC-TATATCGAGAAGCTCA
49296744 TAAGAGTTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
24 5 0.12
25 6 0.14
26 29 0.67
27 3 0.07
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.16
Consensus pattern (25 bp):
CAAAGAGCCTATATCGAGAAGCTCA
Found at i:49297193 original size:21 final size:21
Alignment explanation
Indices: 49297169--49297209 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
49297159 AATTTTAACA
*
49297169 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCATAT
* *
49297190 TCAATTCAGTCCAATTCATA
1 TCAATTCAATACAATTCATA
49297210 CCTTAGGTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:49304805 original size:46 final size:45
Alignment explanation
Indices: 49304654--49304875 Score: 162
Period size: 46 Copynumber: 4.7 Consensus size: 45
49304644 GGGGTAAGGT
* *
49304654 GCCGATGCAGTGTCCCAGACACGATCTTACACTAGCTTATATCTCAA
1 GCCGATGCA-TGTCCCAGACATG-TCTTACACTAGCTTACATCTCAA
** * *
49304701 GTTGAAGCCATGTCCCCGACATAGTCTTACACT-GAC-TATCATCTCATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTCA-A
* * * * *
49304749 GCCAACGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTC-AA
** * *
49304795 GCCGATGCATGTCTTAGACATGTCTTACACTAGCACT-CGTCTCAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCAA
* *
49304840 TGCCGATGCCATGTCTCAAACATGGTCTTACACTAG
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG
49304876 ATCTCACAAA
Statistics
Matches: 141, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 61 0.43
47 60 0.43
48 19 0.13
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAA
Found at i:49311117 original size:40 final size:40
Alignment explanation
Indices: 49311061--49311245 Score: 307
Period size: 40 Copynumber: 4.6 Consensus size: 40
49311051 CGGATGATAA
49311061 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
49311101 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
49311141 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * **
49311181 CCGGGGTAAGTCCTGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
49311221 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49311246 AGTGGTAGCT
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:49322834 original size:23 final size:23
Alignment explanation
Indices: 49322804--49322850 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
49322794 GGCATGAGCA
49322804 AAACTTACTTATTAATATTCACT
1 AAACTTACTTATTAATATTCACT
49322827 AAACTTACTTATTAATATTCACT
1 AAACTTACTTATTAATATTCACT
49322850 A
1 A
49322851 CACGTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (23 bp):
AAACTTACTTATTAATATTCACT
Found at i:49323126 original size:46 final size:45
Alignment explanation
Indices: 49323021--49323235 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 45
49323011 GGTAAGTTGT
* * *
49323021 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTAGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AGGC
*
49323067 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGC
* * * * * * *
49323113 CGAAGCATGTCCCAGACATCTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGC
* * * *
49323159 CGATGCCATGTCCAAAACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGC
*
49323207 CGATGTATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
49323236 AGCTCACACA
Statistics
Matches: 137, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 64 0.47
47 24 0.18
48 21 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGC
Found at i:49323193 original size:94 final size:92
Alignment explanation
Indices: 49323027--49323243 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 92
49323017 TTGTCGATGC
* * *
49323027 CATGTCCCAGACATGGTCTTACACT-G-ACACATCTAGTAGCCGATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACAT-GTCTTACACTAGCACACATCTAATAGCCGATGCATGTCCAAAACATGTCT
* *
49323090 TACACTGGCT-TACGT-CTCGAGGCCGAAG
65 TACACTGGCTCT-CATAAT-GAGGCCGAAG
* * *
49323118 CATGTCCCAGACATCTCTTACACTAGCACTCGTCTCAAT-GCCGATGCCATGTCCAAAACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCACACATCT-AATAGCCGATG-CATGTCCAAAACAT-GT
* *
49323182 CTTACACTGGCTCTCATAATGTGGCCGATG
63 CTTACACTGGCTCTCATAATGAGGCCGAAG
* *
49323212 TATGTCCCAGACATGTCTTACACTAGCTCACA
1 CATGTCCCAGACATGTCTTACACTAGCACACA
49323244 CAAGTGACCC
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
90 9 0.09
91 15 0.14
92 13 0.12
93 14 0.13
94 51 0.49
95 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCACACATCTAATAGCCGATGCATGTCCAAAACATGTCTT
ACACTGGCTCTCATAATGAGGCCGAAG
Found at i:49325984 original size:32 final size:31
Alignment explanation
Indices: 49325927--49325989 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
49325917 AGTAATTCGT
* *
49325927 AAAGGGTTTTAGTTGAGCCACAAAAAACTAGG
1 AAAGGGTTCTAGTTAAGCCAC-AAAAACTAGG
**
49325959 AAAGGGTTCTAGTTAAGCCTTAAAAACTAGG
1 AAAGGGTTCTAGTTAAGCCACAAAAACTAGG
49325990 GGGAAGGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGGTTCTAGTTAAGCCACAAAAACTAGG
Found at i:49327645 original size:23 final size:20
Alignment explanation
Indices: 49327605--49327645 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
49327595 TCTTTTTTTC
49327605 AATTTAAAATGAAAATTTAT
1 AATTTAAAATGAAAATTTAT
49327625 AATTTAATAATAGTAAAATTT
1 AATTTAA-AAT-G-AAAATTT
49327646 TATTTTGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 1 0.06
23 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (20 bp):
AATTTAAAATGAAAATTTAT
Found at i:49329938 original size:143 final size:142
Alignment explanation
Indices: 49329407--49331681 Score: 2457
Period size: 143 Copynumber: 16.0 Consensus size: 142
49329397 TTTCGAGGTA
* * *
49329407 AAGTTCTTATGTCTTATGACTTTTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTG
1 AAGTTCTTATGTCTTATGA---TTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTG
* * ** *
49329472 AGGCGCAGTTCGTTGCGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAAGAAATTTG
62 AGGCGAAG-TCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA
* * * *
49329537 GCATGAGATGCATACCA
126 CCATGTGATGCATAGCG
* *
49329554 AAGTTCTTATGTCTTGTGA-TTTTTTTAATTTAATTTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * * *
49329618 GAAATCAATTAC-AGAATCAATGATAAAGTATAAACTTTTAACAAGTTAAAATGGAAATTTACCA
66 GAAGTC-GTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
49329682 TGTGATGCA-AGCG
129 TGTGATGCATAGCG
* * * * * *
49329695 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTGTTAAATATTGAGAAC-CGAATTTTAAAG
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATT-AAAACTCGAATTTTGAGG
* * * * * *
49329759 CGAAGTCCATTACAAAATTAAAGATAAAGTATAAATTTTTAAGAGGTTACAATGGAAATATATCA
65 CGAAGT-CGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
*
49329824 TGTGATGCATAACG
129 TGTGATGCATAGCG
* * * * *
49329838 AAGTTCTTATGTCTTATAATTTTTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTGAAG
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * * *
49329903 TGAAGTCGTTACGAAATAAAAAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTACC--
65 CGAAGTCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
49329966 ---ATG--T---G
130 GTGATGCATAGCG
* * * *
49329971 AAGTTATTATGTCTTATGATTGTTTTCTAATTTTATTTTTAAATATTGAAACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
*
49330036 CGAAGTCCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGCA-GTTAAAATGGAAATTTACC
65 CGAAGT-CGTTACGAAATCAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACC
49330100 ATGTGATGCATAGCG
128 ATGTGATGCATAGCG
* * * * *
49330115 AAGTTCTTATGTCATATGATTTTTTTTAATTTCA-TTTTAAATATTGAAACTCAAATTTTGGGGT
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * * * * *
49330179 GAAGCCCATTACGGAATCAAAGGTCAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACAAT
66 GAAG-TCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
49330244 GTGATGCATAGCG
130 GTGATGCATAGCG
* * *
49330257 AAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGACACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * *
49330322 CGAAGTCCGTTAC-AGAATCAAAGATAAAATATAAATTGTTAAGAGGTTAAAAAGGAAATTTACT
65 CGAAGT-CGTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
49330386 ATGTGATGCATAGCG
128 ATGTGATGCATAGCG
*
49330401 AAGTTCTTATGTCTTATGATGTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * *
49330466 GAAGTTAGTTAC-AGAACCAAAGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCA
66 GAAG-TCGTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* *
49330530 TGTGATGCACAACG
129 TGTGATGCATAGCG
** * ** * * * *
49330544 AAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * *
49330609 GAAGTCGGTTACAAAATCAAAGATAAAGTATAAATCTTTAAGAGGTTAAAATGAAAATTTACAAT
66 GAAGTC-GTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
*
49330674 ATGATGCATAGCG
130 GTGATGCATAGCG
* ** * * * ** * *
49330687 AAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * *
49330752 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGATTAAAAAGGAAATTTACCAT
66 GAAGT-CGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
49330817 GTGATGCATAGCG
130 GTGATGCATAGCG
* * *
49330830 AAGTTCCTATGTCTTATGA-TGTTTTTAATTTCATCTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * *
49330894 GAAGTTGGTTACAAAATCAAAGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCAT
66 GAAG-TCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
* *
49330959 GTGATGCACAACG
130 GTGATGCATAGCG
** * * * *
49330972 AAGTTCTCGTGTCTTATGATTCTTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCT-AGG
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTT-TGAGG
* * *
49331036 CGAAGTCGATTA-TAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTGCA
65 CGAAGTCG-TTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
* *
49331100 ATGTGATGTATAACG
128 ATGTGATGCATAGCG
* * * ** *
49331115 AAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * ** *
49331180 CATGTCTGTTACGGAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAATTTAGAAATTTACCAT
66 GAAGTC-GTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
49331245 GTGATGCATAGCG
130 GTGATGCATAGCG
* * * * * *
49331258 AAGTTTTTATGTCATATGAATTTTTTTCAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGA
1 AAGTTCTTATGTCTTATG-ATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * *
49331323 CAAAGTCCGTTACG--GT-AACA-ATAAAGTATATATTTTTAACAGATTAAAATGGAAATTTACC
65 CGAAGT-CGTTACGAAATCAA-AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
*
49331384 ATGTGATGCACAGC-
128 ATGTGATGCATAGCG
* * *
49331398 ATGGTTCTTATGTCGTATGGTTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
1 A-AGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * *
49331463 CGAAGTCGGTTAC-ATAATGAAAGATATAGTATAAACTTTTAAGAGGTTAAAATGTAAATTAACC
65 CGAAGTC-GTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
* * *
49331527 ATGTGGTGCACAGAG
128 ATGTGATGCATAGCG
** * *
49331542 AAGTTCTCGTGTCTTATGATTCTTTTTT-ATTTCATTTTTAATTATTGAAACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * * * * *
49331606 CAAAGTCCATTTC-AGAATCAAAGATATATTATATATTTTTAAGAGGTTAAAATGAAAACTTACC
65 CGAAGT-CGTTACGA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
*
49331670 TTGTGATGCATA
128 ATGTGATGCATA
49331682 ATGAAGATCT
Statistics
Matches: 1796, Mismatches: 279, Indels: 110
0.82 0.13 0.05
Matches are distributed among these distances:
133 56 0.03
134 54 0.03
135 1 0.00
136 1 0.00
138 3 0.00
139 4 0.00
140 52 0.03
141 87 0.05
142 430 0.24
143 858 0.48
144 231 0.13
145 1 0.00
147 18 0.01
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (142 bp):
AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
GAAGTCGTTACGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATG
TGATGCATAGCG
Found at i:49331004 original size:428 final size:428
Alignment explanation
Indices: 49329407--49331681 Score: 2683
Period size: 428 Copynumber: 5.3 Consensus size: 428
49329397 TTTCGAGGTA
* * *
49329407 AAGTTCTTATGTCTTATGACTTTTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTG
1 AAGTTCTCATGTCTTATGA---TTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTG
* * * *
49329472 AGGCGC-AGTTCGTTGCGAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAAGAAATTT
62 AGGC-CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTT
** * * * * * *
49329536 GGCATGAGATGCATACCAAAGTTCTTATGTCTTGTGATTTTTTTAATTTAATTTTTAAATATTAA
126 ACCATGTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTAATTTCATTTTTAAATATTAA
* * * * * * * *
49329601 AACTCGAATTTTGAGGCGAAATCAATTACAGAATCAATGATAAAGTATAAACTTTTAACAAGTTA
191 AACTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTA
49329666 AAATGGAAATTTACCATGTGATGCA-AGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTC-A
256 AAATGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAA
* * * * * *
49329729 TTGTTAAATATTGAGAAC-CGAATTTTAAAGCGAAGTCCATTACAAAATTAAAGATAAAGTATAA
321 TT-TTAAATATT-AAAACTCAAATTTTGAGGCGAAGTCGATTACAAAATCAAAGATAAAGTATAA
* * * *
49329793 ATTTTTAAGAGGTTACAATGGAAATATATC-ATGTGATGCATAACG
384 ATTTTTAAGAGGTTAAAATGAAAATTTA-CAATGTGATGCATAGCG
* * * * *** * *
49329838 AAGTTCTTATGTCTTATAATTTTTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTGAAG
1 AAGTTCTCATGTCTTATGATTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
** * * * * * * *
49329903 TGAAGT-CGTTACGAAATAAAAAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTACC-
65 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
* * *
49329966 ----ATG--T---GAAGTTATTATGTCTTATGATTGTTTTCTAATTTTATTTTTAAATATTGAAA
130 TGTGATGCATAGCGAAGTTCTTATGTCTTATGA-TGTTTT-TAATTTCATTTTTAAATATTAAAA
* * *
49330022 CTCGAATTTTGAGGCGAAGTCCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGCA-GTTAA
193 CTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAG-AGGTTAA
* * * *
49330086 AATGGAAATTTACCATGTGATGCATAGCGAAGTTCTTATGTCATATGATTTTTTTTAATTTC-AT
257 AATGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAAT
* * * * * ** * *
49330150 TTTAAATATTGAAACTCAAATTTTGGGGTGAAGCCCATTACGGAATCAAAGGTCAAGTATAAATT
322 TTTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGATTACAAAATCAAAGATAAAGTATAAATT
*
49330215 TTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
387 TTTAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* * *
49330257 AAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGACACTCGAATTTTGAGG
1 AAGTTCTCATGTCTTATGATTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
* * * * *
49330322 CGAAGTCCGTTACAGAATCAAAGATAAAATATAAATTGTTAAGAGGTTAAAAAGGAAATTTACTA
65 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
49330387 TGTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTTAATTTCATTTTTAAATATTAAAAC
130 TGTGATGCATAGCGAAGTTCTTATGTCTTATGATG-TTTTTAATTTCATTTTTAAATATTAAAAC
* * * *
49330452 TCGAATTTTGAGGCGAAGTTAGTTACAGAACCAAAGATATATTATAAAATTTTAAGAGGTTAAAA
194 TCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAA
* * * *
49330517 TGGAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAATTT
259 TGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATTT
* * * *
49330582 TAAATATTAAAATTCAAATTTCGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATCTT
324 TAAATATTAAAACTCAAATTTTGAGGCGAAGTCGATTACAAAATCAAAGATAAAGTATAAATTTT
*
49330647 TAAGAGGTTAAAATGAAAATTTACAATATGATGCATAGCG
389 TAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* * * * **
49330687 AAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
*
49330752 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGATTAAAAAGGAAATTTACCAT
66 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
* *
49330817 GTGATGCATAGCGAAGTTCCTATGTCTTATGATGTTTTTAATTTCATCTTTAAATATTAAAACTC
131 GTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTAATTTCATTTTTAAATATTAAAACTC
** *
49330882 GAATTTTGAGGCGAAGTTGGTTACAAAATCAAAGATATATTATAAAATTTTAAGAGGTTAAAATG
196 GAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAATG
* *
49330947 GAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTCAATTTTA
261 GAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATTTTA
* * *
49331012 AATATTAAAATTCAAATTTCT-AGGCGAAGTCGATTATAGAATCAAAGATAAAGTATAAATTTTT
326 AATATTAAAACTCAAATTT-TGAGGCGAAGTCGATTACAAAATCAAAGATAAAGTATAAATTTTT
* * * *
49331076 AAGAGGTTAAAATGGAAATTTGCAATGTGATGTATAACG
390 AAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* *
49331115 AAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
* * * **
49331180 CATGTCTGTTACGGAATCAAAGATAAAGTATAAAATTTTAAGAGGTTAATTTA-GAAATTTACCA
66 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAA-AAAGGAAATTTACCA
* * * *
49331244 TGTGATGCATAGCGAAGTTTTTATGTCATATGAATTTTTTTCAATTTCATTTTTAAATATTGAAA
130 TGTGATGCATAGCGAAGTTCTTATGTCTTATG-ATGTTTTT-AATTTCATTTTTAAATATTAAAA
* * * * ** * * * * *
49331309 CTCAAATTTTGAGACAAAGTCCGTTAC--GGT-AACA-ATAAAGTATATATTTTTAACAGATTAA
193 CTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAA-AGATATAGTATAAAATTTTAAGAGGTTAA
* * * * * *
49331370 AATGGAAATTTACCATGTGATGCACAGC-ATGGTTCTTATGTCGTATGGTTTTTTTTAATTTCAT
257 AATGGAAATTTACCATGTGATGCACAGCGA-AGTTCTCATGTCTTATGATTCTTTTTAATTTCAA
* * * * * *
49331434 TTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCGGTTACATAATGAAAGATATAGTATAAAC
321 TTTTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGATTACAAAATCAAAGATAAAGTATAAAT
* * * * * *
49331499 TTTTAAGAGGTTAAAATGTAAATTAACCATGTGGTGCACAGAG
386 TTTTAAGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
* * * *
49331542 AAGTTCTCGTGTCTTATGATTCTTTTTTATTTCATTTTTAATTATTGAAACTCGAATTTTGAGGC
1 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
* * * * * * * * * * *
49331607 AAAGTCCATTTCAGAATCAAAGATATATTATATATTTTTAAGAGGTTAAAATGAAAACTTACCTT
66 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
49331672 GTGATGCATA
131 GTGATGCATA
49331682 ATGAAGATCT
Statistics
Matches: 1597, Mismatches: 218, Indels: 62
0.85 0.12 0.03
Matches are distributed among these distances:
417 17 0.01
418 9 0.01
419 244 0.15
420 85 0.05
422 3 0.00
425 3 0.00
426 2 0.00
427 331 0.21
428 436 0.27
429 269 0.17
430 180 0.11
431 18 0.01
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (428 bp):
AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
GTGATGCATAGCGAAGTTCTTATGTCTTATGATGTTTTTAATTTCATTTTTAAATATTAAAACTC
GAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAATG
GAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCAATTTTA
AATATTAAAACTCAAATTTTGAGGCGAAGTCGATTACAAAATCAAAGATAAAGTATAAATTTTTA
AGAGGTTAAAATGAAAATTTACAATGTGATGCATAGCG
Found at i:49331987 original size:142 final size:143
Alignment explanation
Indices: 49331722--49331984 Score: 325
Period size: 142 Copynumber: 1.9 Consensus size: 143
49331712 AAAGAAGTTG
* ** * * *
49331722 TTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTGAAACTTAAATTTTGAGGCTAA
1 TTCTTATGTCATATGATTTTTTTTAATTTCATTTTTAAATATCAAAACTGAAATTTTAAGGCGAA
* **
49331787 GTCCATTACGGAATCAAAGATAAAATATAATTTTTTAAGAGGTTAAAAAAGAAATTTACTATGTG
66 GTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAGGTTAAAAAAGAAATTTACTATGTG
49331852 ATGTATACCGAAA
131 ATGTATACCGAAA
*
49331865 TTCTTATGTCATATGA-TTTTTTTCATTTCATTTTTAAATATCAAAACTCGAAA-TTTAAGGCGA
1 TTCTTATGTCATATGATTTTTTTTAATTTCATTTTTAAATATCAAAACT-GAAATTTTAAGGCGA
*** * * * ** *
49331928 AGTTGGTTACAGAATCAAAGATATAGTGTAAACTTTTACTAGGTT-AAAATGAAATTT
65 AGTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAGGTTAAAAAAGAAATTT
49331985 TACCATGGAT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
141 11 0.11
142 71 0.71
143 18 0.18
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (143 bp):
TTCTTATGTCATATGATTTTTTTTAATTTCATTTTTAAATATCAAAACTGAAATTTTAAGGCGAA
GTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAGGTTAAAAAAGAAATTTACTATGTG
ATGTATACCGAAA
Found at i:49333018 original size:143 final size:143
Alignment explanation
Indices: 49332771--49333299 Score: 638
Period size: 142 Copynumber: 3.7 Consensus size: 143
49332761 TTTATGATTC
* * *
49332771 TTTTTAAATATTGAAACTCGAATTTTGAGGCATAGACCGTTAC-AGAATTAAAGATAAAGTATAA
1 TTTTTAAATATTGAAACTCGAACTTTGAGGCAAAGTCCGTTACGA-AATTAAAGATAAAGTATAA
* * *
49332835 AATTTTAAGAGGTTACAATGGTAATTTACAATGTGATGCTTAGTGAAGTTCTCGTGTCTTATGAT
65 AGTTTTAAGAGGTTAAAATGGTAATTTACAATGTGATGCTTAGTGAAGTTCTCATGTCTTATGAT
49332900 TCTTTTTAATTTCA
130 TCTTTTTAATTTCA
* * * * *
49332914 TTTTTAAATATTGAAACTCAAACTTTAAGGCAAAGTCCATTGCGAAATTAAAGATAAAATATAAA
1 TTTTTAAATATTGAAACTCGAACTTTGAGGCAAAGTCCGTTACGAAATTAAAGATAAAGTATAAA
* *
49332979 GTTTTAAGAGGTTAAAATGGTAATTTACAATTTGATGCTTTGTGAAGTTCTCATGTCTTATGATT
66 GTTTTAAGAGGTTAAAATGGTAATTTACAATGTGATGCTTAGTGAAGTTCTCATGTCTTATGATT
49333044 CTTTTTAATTTCA
131 CTTTTTAATTTCA
* * *
49333057 -TTTTAATTATTGAAACTCGAACTTTGAGGCGAAGTTCGTTACGAAATTAAAGATAAAGTATAAA
1 TTTTTAAATATTGAAACTCGAACTTTGAGGCAAAGTCCGTTACGAAATTAAAGATAAAGTATAAA
* * * * * * * * * *
49333121 GTTTTAAGAGGTTAAATTGGAAATATACCATGTAATGCATAG-CAGACTTCTCATGTTTTCTGAT
66 GTTTTAAGAGGTTAAAATGGTAATTTACAATGTGATGCTTAGTGA-AGTTCTCATGTCTTATGAT
*
49333185 T-TTTTTAATTTCG
130 TCTTTTTAATTTCA
* * * * ** *
49333198 TTTTTAAATATTAAAATTTGAA-TTTCGAGGCGAAGTTGGTTAC-AGAATCAAAGATAAAGTATA
1 TTTTTAAATATTGAAACTCGAACTTT-GAGGCAAAGTCCGTTACGA-AATTAAAGATAAAGTATA
* * * *
49333261 AACTTTTAAAATGTTAAAATGGAAATTTACAATGTGATG
64 AAGTTTTAAGAGGTTAAAATGGTAATTTACAATGTGATG
49333300 TAGAGCGAAG
Statistics
Matches: 334, Mismatches: 47, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
141 16 0.05
142 189 0.57
143 128 0.38
144 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (143 bp):
TTTTTAAATATTGAAACTCGAACTTTGAGGCAAAGTCCGTTACGAAATTAAAGATAAAGTATAAA
GTTTTAAGAGGTTAAAATGGTAATTTACAATGTGATGCTTAGTGAAGTTCTCATGTCTTATGATT
CTTTTTAATTTCA
Found at i:49336231 original size:143 final size:141
Alignment explanation
Indices: 49335968--49336694 Score: 767
Period size: 143 Copynumber: 5.1 Consensus size: 141
49335958 GGGTGTTACA
* * * *
49335968 GAAGTTCTCATGTCTTATAATATTTTTTTAATTTTCATTTTTAAATATTGAAACTCGAATTTTGT
1 GAAGTTCTCATGTCTTATGAT-TCTTTTTAA-TTTCA-TTTTAAATATTGAAACTTGAATTTTGA
* * * **
49336033 GGCGAAG-TCAGTTACAGAGTC-AAGATAAAGTATAAAATTTTGAGAGGTTCTAATGGAAATTTA
63 GGCGAAGTTC-GTTACA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA
*
49336096 CCATGTGATGCATAGC
126 CCATGTGATGCATAGT
* * *
49336112 GAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAGTATTAAATATTGAAACTTGAATTTCGAGG
1 GAAGTTCTCATGTCTTATGATTCTTTTTAATTTCA-TTTTAAATATTGAAACTTGAATTTTGAGG
* * * *
49336177 CAAAGTTCGTTATGAAATCAAAGATAAATTATATATTTTTAAGAGGTTAAAATGGAAATTTACCA
65 CGAAGTTCGTTA-CAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
*
49336242 TGTAATGCATAGT
129 TGTGATGCATAGT
* * * * * * *
49336255 GAAGTTCTTATGTATTATAGTTTTTTTTTCAATATCATTTTTAAATATTGATAGTTGAATTTTGA
1 GAAGTTCTCATGTCTTAT-GATTCTTTTT-AATTTCA-TTTTAAATATTGAAACTTGAATTTTGA
* * * *
49336320 GGCGAAGTTCGTTACAGAATAAAAGATAATGTCTAAATTTTAAAGAGGTTAAAATGGAAATTTAC
63 GGCGAAGTTCGTTACA-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC
* * *
49336385 TATGTGATGCATGGC
127 CATGTGATGCATAGT
* * **
49336400 GAAGTTCTCATGTCTTATGGTTCTTTTTAATTTCATTTTCAAATATTGACACTCAAATTTTGAGG
1 GAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTT-AAATATTGAAACTTGAATTTTGAGG
* * ** * * * *
49336465 CAAAGTCCGTTATGGAATCAAAGATAAAATATAAATTTTTAAAAGATTTAAATGGAAATTTACCA
65 CGAAGTTCGTTA-CAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* **
49336530 TGTTATTTATAGT
129 TGTGATGCATAGT
* * * * *
49336543 GAAGTTCTTATGTCTTATTATTATTTTTTATTTCATTTGTAAATATTAAAACTTGAATTTTGAGG
1 GAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTT-TAAATATTGAAACTTGAATTTTGAGG
* * * **
49336608 TGAAG-TCAGTTACAAAATCAAAGATATAGTATAAACTTTTAAGAGGTTAAAATAAAAATTTACC
65 CGAAGTTC-GTTAC-AAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
*
49336672 ATGTGATGCTTAGT
128 ATGTGATGCATAGT
49336686 GAAGTTCTC
1 GAAGTTCTC
49336695 GTGTATTTTG
Statistics
Matches: 476, Mismatches: 96, Indels: 23
0.80 0.16 0.04
Matches are distributed among these distances:
142 45 0.09
143 283 0.59
144 38 0.08
145 110 0.23
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (141 bp):
GAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTAAATATTGAAACTTGAATTTTGAGGC
GAAGTTCGTTACAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATG
TGATGCATAGT
Found at i:49336486 original size:288 final size:284
Alignment explanation
Indices: 49335968--49336694 Score: 922
Period size: 288 Copynumber: 2.5 Consensus size: 284
49335958 GGGTGTTACA
* * * *
49335968 GAAGTTCTCATGTCTTATAATATTTTTTTAATTTTCATTTTTAAATATTGAAACTCGAATTTTGT
1 GAAGTTCTTATGTCTTAT-ATTTTTTTTTAA-TTTCATTTTTAAATATTGAAACTTGAATTTTGA
* * * * **
49336033 GGCGAAGTCAGTTACAGAGTCAAGATAAAGTATAAAATTTTGAGAGGTTCTAATGGAAATTTACC
64 GGCGAAGTCAGTTACAGAATAAAGATAATGTAT-AAATTTTAAGAGGTTAAAATGGAAATTTACC
49336098 ATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAGTATTAAATATTGAAA
128 ATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAGTATTAAATATTGAAA
** * * * * *
49336163 CTTGAATTTCGAGGCAAAGTTCGTTATGAAATCAAAGATAAATTATATATTTTTAAGAGGTTAAA
193 CTCAAATTTCGAGGCAAAGTCCGTTATGAAATCAAAGATAAAATATAAATTTTTAAAAGATTAAA
49336228 ATGGAAATTTACCATGTAATGCATAGT
258 ATGGAAATTTACCATGTAATGCATAGT
* * * *
49336255 GAAGTTCTTATGTATTATAGTTTTTTTTTCAATATCATTTTTAAATATTGATAGTTGAATTTTGA
1 GAAGTTCTTATGTCTTATA-TTTTTTTTT-AATTTCATTTTTAAATATTGAAACTTGAATTTTGA
*
49336320 GGCGAAGTTC-GTTACAGAATAAAAGATAATGTCTAAATTTTAAAGAGGTTAAAATGGAAATTTA
64 GGCGAAG-TCAGTTACAGAAT-AAAGATAATGTATAAATTTT-AAGAGGTTAAAATGGAAATTTA
* * * * *
49336384 CTATGTGATGCATGGCGAAGTTCTCATGTCTTATGGTTCTTTTTAATTTCA-TTTTCAAATATTG
126 CCATGTGATGCATAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAGTATT-AAATATTG
* * *
49336448 ACACTCAAATTTTGAGGCAAAGTCCGTTATGGAATCAAAGATAAAATATAAATTTTTAAAAGATT
190 AAACTCAAATTTCGAGGCAAAGTCCGTTATGAAATCAAAGATAAAATATAAATTTTTAAAAGATT
* * **
49336513 TAAATGGAAATTTACCATGTTATTTATAGT
255 AAAATGGAAATTTACCATGTAATGCATAGT
* * *
49336543 GAAGTTCTTATGTCTTATTATTATTTTTT-ATTTCATTTGTAAATATTAAAACTTGAATTTTGAG
1 GAAGTTCTTATGTCTTA-TATTTTTTTTTAATTTCATTTTTAAATATTGAAACTTGAATTTTGAG
* * **
49336607 GTGAAGTCAGTTACAAAATCAAAGAT-ATAGTATAAACTTTTAAGAGGTTAAAATAAAAATTTAC
65 GCGAAGTCAGTTACAGAAT-AAAGATAAT-GTATAAA-TTTTAAGAGGTTAAAATGGAAATTTAC
* *
49336671 CATGTGATGCTTAGTGAAGTTCTC
127 CATGTGATGCATAGCGAAGTTCTC
49336695 GTGTATTTTG
Statistics
Matches: 379, Mismatches: 51, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
285 4 0.01
286 98 0.26
287 82 0.22
288 193 0.51
289 2 0.01
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (284 bp):
GAAGTTCTTATGTCTTATATTTTTTTTTAATTTCATTTTTAAATATTGAAACTTGAATTTTGAGG
CGAAGTCAGTTACAGAATAAAGATAATGTATAAATTTTAAGAGGTTAAAATGGAAATTTACCATG
TGATGCATAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAGTATTAAATATTGAAACTC
AAATTTCGAGGCAAAGTCCGTTATGAAATCAAAGATAAAATATAAATTTTTAAAAGATTAAAATG
GAAATTTACCATGTAATGCATAGT
Found at i:49337691 original size:143 final size:143
Alignment explanation
Indices: 49337521--49338449 Score: 1023
Period size: 143 Copynumber: 6.5 Consensus size: 143
49337511 GAGAAGTTGG
* * *
49337521 TTACAGAATCAAA-AGTAAAGTATAAATTTTTAAAAGGTTCAAATGGAAATTTACAATGTGATGC
1 TTACGGAATCAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
* *
49337585 ATAGCAAAGTGCTCATGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTT
65 ATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT
49337650 TGAGGCAAAGTCCA
130 TGAGGCAAAGTCCA
* * * * *
49337664 TTACGGAATTATAGATAAAATATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * * * * *
49337729 TAGCAAACTTCTCATG--TAATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTC
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
* * *
49337792 GAGACTAAGTCGA
131 GAGGCAAAGTCCA
** * * * * * *
49337805 TTACATAATCAAATATAGACTATAAATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATACA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* ** * *
49337870 T-GACGAAGTTCTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAACTATTGAAACTCGAATTG
66 TAG-CAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT
*
49337934 TGAGG-AGAACTCCA
130 TGAGGCA-AAGTCCA
* * * * * *
49337948 TTACGAAATGAAAGATAAAGTATAAATTTTTAAGACGTTAAAATGGAAATATACCATTTGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * * * *
49338013 TAGCACAGTTCTCATGTTTTATGA-TCTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTA
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
**
49338077 GAGGCAAAGTCGG
131 GAGGCAAAGTCCA
** * * * * * * *
49338090 TTATAGAATCAAAGGTAAAGTATAAAATTTTGAGACGTTCAAATGAAAATTTACCATGTGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
* * * * * *
49338155 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAAATATTCAAACTTGAATTTC
66 TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
* *
49338220 GAGGCGAAGTTCA
131 GAGGCAAAGTCCA
* * *
49338233 TTACGGGATCAAAGAAAAAGTATATATTTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
1 TTACGGAATCAAAGATAAAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGC
* * * *
49338298 ATAGCGAAGTTCTCATG---TATGAATCATTTTAATTTCATTATTAAATATTGAAACTCGAATTT
65 ATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT
*
49338360 TGAGGAAAAGTCCA
130 TGAGGCAAAGTCCA
* * * * * * *
49338374 TTA-GGAATTATAGACAAAGTATAAGTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCA
1 TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
*
49338438 TAGCAAACTTCT
66 TAGCAAAGTTCT
49338450 TGGGTCTTCT
Statistics
Matches: 648, Mismatches: 129, Indels: 22
0.81 0.16 0.03
Matches are distributed among these distances:
139 47 0.07
140 17 0.03
141 167 0.26
142 118 0.18
143 248 0.38
144 51 0.08
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (143 bp):
TTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCA
TAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT
GAGGCAAAGTCCA
Found at i:49337991 original size:284 final size:280
Alignment explanation
Indices: 49337481--49338449 Score: 1084
Period size: 284 Copynumber: 3.4 Consensus size: 280
49337471 TTGGAAGTTT
* * * *
49337481 ATTTTTAAAAATTTAAATTTAAATTTCGAGGA-GAAGTTGGTTACAGAATCAAAAGTAAAGTATA
1 ATTTTTAAATATTAAAATTTAAATTTCGA-GACAAAGTCGGTTACAGAATCAAAA-TAAAGTATA
* *
49337545 AATTTTTAAAAGGTTCAAATGGAAATTTACAATGTGATGCATAGCAAAGTGCTCATGTCTTATGA
64 AATTTTTAAAAGGTTCAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGA
* *
49337610 TTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCA-AAGTCCATTACGGAATT
129 TTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAA-TTTGAGG-AGAAGTCCATTACGGAATC
* * * *
49337674 ATAGATAAAATATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAACTT
192 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTT
*
49337739 CTCATGTAATGATTTTTTTTAATTTC
257 CTCATGT-ATGA-TCTTTTTAATTTC
* * * * * *
49337765 ATTTTTAAATATTAAAATTCAAATTTCGAGACTAAGTCGATTACATAATCAAATATAGACTATAA
1 ATTTTTAAATATTAAAATTTAAATTTCGAGACAAAGTCGGTTACAGAATCAAA-ATAAAGTATAA
* * * **
49337830 ATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATACAT-GACGAAGTTCTTGTGTCTTATGA
65 ATTTTTAAAAGGTTCAAATGAAAATTTACAATGTGATGCATAG-CAAAGTTCTCATGTCTTATGA
* * * *
49337894 TTCTTTTTAATTTCATTTTTAACTATTGAAACTCGAATTGTGAGGAGAACTCCATTACGAAATGA
129 TTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATT-TGAGGAGAAGTCCATTACGGAATCA
* * * *
49337959 AAGATAAAGTATAAATTTTTAAGACGTTAAAATGGAAATATACCATTTGATGCATAGCACAGTTC
193 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTC
49338024 TCATGTTTTATGATCTTTTTAATTTC
258 TCATG---TATGATCTTTTTAATTTC
* * * * *
49338050 ATTTTTAAATATTAAAATTTGAATTTAGAGGCAAAGTCGGTTATAGAATCAAAGGTAAAGTATAA
1 ATTTTTAAATATTAAAATTTAAATTTCGAGACAAAGTCGGTTACAGAATCAAA-ATAAAGTATAA
* * * * *
49338115 AATTTTGAGACGTTCAAATGAAAATTTACCATGTGATGCATAGCAAAGTTCTCATGTCTTATGAT
65 ATTTTTAAAAGGTTCAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGAT
* * * * * * * *
49338180 TCTTTTTAATTTAAATATTAAATATTCAAACTTGAATTTCGAGGCGAAGTTCATTACGGGATCAA
130 TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT-GAGGAGAAGTCCATTACGGAATCAA
* * * *
49338245 AGAAAAAGTATATATTTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTC
194 AGATAAAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTC
*
49338310 TCATGTATGAATCATTTTAATTTC
258 TCATGTATG-ATCTTTTTAATTTC
* * * ** * ** * * * *
49338334 ATTATTAAATATTGAAACTCGAATTTTGAGGA-AAAGTCCATTA-GGAATTATAGACAAAGTATA
1 ATTTTTAAATATTAAAATTTAAATTTCGA-GACAAAGTCGGTTACAGAATCA-AAATAAAGTATA
* * * * * *
49338397 AGTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCT
64 AATTTTTAAAAGGTTCAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCT
49338450 TGGGTCTTCT
Statistics
Matches: 575, Mismatches: 96, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
283 66 0.11
284 271 0.47
285 182 0.32
286 55 0.10
287 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (280 bp):
ATTTTTAAATATTAAAATTTAAATTTCGAGACAAAGTCGGTTACAGAATCAAAATAAAGTATAAA
TTTTTAAAAGGTTCAAATGAAAATTTACAATGTGATGCATAGCAAAGTTCTCATGTCTTATGATT
CTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTGAGGAGAAGTCCATTACGGAATCAAAG
ATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAAGTTCTCA
TGTATGATCTTTTTAATTTC
Found at i:49338571 original size:86 final size:86
Alignment explanation
Indices: 49338399--49338557 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 86
49338389 AAAGTATAAG
* * * *
49338399 TTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTCTGATT
1 TTTTTAAAAGGTTAAAAAGGAAATTTACAATGCGATGCACAGCAAACTTCTTGGGTCTTATGATT
49338464 CTTATTAAGATATAGTGTAAA
66 CTTATTAAGATATAGTGTAAA
* * * ** * *
49338485 TTTTTAAGATGTTAAAAAGGAAATTTACAATGTGATGCACAGTGAAGTTCTTGTGTCTTATGATT
1 TTTTTAAAAGGTTAAAAAGGAAATTTACAATGCGATGCACAGCAAACTTCTTGGGTCTTATGATT
*
49338550 CTTTTTAA
66 CTTATTAA
49338558 TTTCATTTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
86 61 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (86 bp):
TTTTTAAAAGGTTAAAAAGGAAATTTACAATGCGATGCACAGCAAACTTCTTGGGTCTTATGATT
CTTATTAAGATATAGTGTAAA
Found at i:49338761 original size:141 final size:140
Alignment explanation
Indices: 49338470--49339104 Score: 681
Period size: 143 Copynumber: 4.5 Consensus size: 140
49338460 GATTCTTATT
* * * * ** *
49338470 AAGATATAGTGTAAATTTTTAAGATGTTAAAA-AGGAAATTTACAATGTGATGCACAGTGAAGTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATA-GAAATTTACAATGTGATGCATAGCAAACTT
* * * * *
49338534 CTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTCTAGGCGAAGT
65 CTCGTGTTTTATGA-TCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGT
*
49338599 CGGTTATGGAATTA
128 CGGTTAT-GAATCA
* * *
49338613 AAGATAAAATATAAAATTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTC
* * *
49338678 CCGTGTTTTATGAT-TTTTTAATTTCTTTTTTAAATATTAAAATTTGAATTTCGAGGCAACGTCG
66 TCGTGTTTTATGATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAA-GTCG
49338742 GTTATAGAATCA
130 GTTAT-GAATCA
* * * *
49338754 AAGATAAAGTATAAATTTTTAAGAGGTTTAAATGGAAATTTA-TATGTGATGCATTGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTC
* * * *
49338818 TCATGTTTTATGAT-TTTTTCAATTTAATTATT-AATATTAGAATTCGAATTTCGAGGCCAAGTC
66 TCGTGTTTTATGATCTTTTT-AATTTCATTTTTAAATATTAAAATTCGAATTTCGAGG-CAAGTC
*
49338881 GATTACTGAATCA
129 GGTTA-TGAATCA
* * * * * *
49338894 AA-ATTAAAGTATAAATTTTTAAGAGGTTAAATTGGAAATTTAAAATGTGACGCAGAGCAAAGTT
1 AAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTT
* * * * * * *
49338958 CTCGTGTATTATGAATCTTTTTAATTTCATTTTTAAGTATTGAAATTAGAATTTTGAAGCAAAGC
65 CTCGTGTTTTATG-ATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGC-AAGT
* *
49339023 CCGTTATGAAATTA
128 CGGTTATG-AATCA
* * *
49339037 TAGATAAAGTATAAATTTTTAAAAGGTTAAAAT-GAAAATTTACCATGTGATGCATAGCAAACTT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAG-AAATTTACAATGTGATGCATAGCAAACTT
49339101 CTCG
65 CTCG
49339105 GGTCTTATTC
Statistics
Matches: 415, Mismatches: 63, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
139 1 0.00
140 112 0.27
141 130 0.31
142 17 0.04
143 153 0.37
144 2 0.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (140 bp):
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTC
TCGTGTTTTATGATCTTTTTAATTTCATTTTTAAATATTAAAATTCGAATTTCGAGGCAAGTCGG
TTATGAATCA
Found at i:49338807 original size:369 final size:369
Alignment explanation
Indices: 49338136--49338818 Score: 874
Period size: 369 Copynumber: 1.9 Consensus size: 369
49338126 GTTCAAATGA
* *
49338136 AAATTTACCATGTGATGCATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
1 AAATTTACAATGTGATGCACAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
* * **
49338201 ATATTCAAACTTGAATTTCGAGGCGAAGTTCATTACGGGATCAAAGAAAAAGTATATATTTTTTA
66 ATATTCAAACTCGAATTTCGAGGCGAAGTTCATTACGGAATCAAAGAAAAAGTATATAAATTTTA
* * * *
49338266 AGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCATGTATGAATCATTTTAAT
131 AGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCCCATGTATGAATCATTTTAAT
* * * * *
49338331 TTCATTATTAAATATTGAAACTCGAATTTTGAGGAAAAGTCCATTAGGAATTATAGACAAAGTAT
196 TTCATTATTAAATATTAAAACTCGAATTTCGAGGAAAAGTCCATTAAGAATCAAAGACAAAGTAT
*
49338396 AAGTTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTCTG
261 AAATTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTCTG
49338461 ATTCTTATTAAGATATAGTGTAAATTTTTAAGATGTTAAAAAGG
326 ATTCTTATTAAGATATAGTGTAAATTTTTAAGATGTTAAAAAGG
** ** * * *
49338505 AAATTTACAATGTGATGCACAGTGAAGTTCTTGTGTCTTATGATTCTTTTTAATTTCATTTTTAA
1 AAATTTACAATGTGATGCACAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
* * * * *
49338570 ATATTGAAACTCGAATTTCTAGGCGAAG-TCGGTTATGGAATTAAAGATAAAA-TATA-AAATTT
66 ATATTCAAACTCGAATTTCGAGGCGAAGTTC-ATTACGGAATCAAAGA-AAAAGTATATAAATTT
* * *
49338632 TAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGCAAACTTCCCGTGTTTTATG-AT-TTT
129 TAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCCCATG---TATGAATCATT
* * * * * * ** *
49338695 TTAATTTCTTTTTTAAATATTAAAATTTGAATTTCGAGGCAACGTCGGTTATAGAATCAAAGATA
191 TTAATTTCATTATTAAATATTAAAACTCGAATTTCGAGGAAAAGTCCATTA-AGAATCAAAGACA
* * * *
49338760 AAGTATAAATTTTTAAGAGGTTTAAATGGAAATTTA-TATGTGATGCATTGCAAACTTCT
255 AAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCT
49338819 CATGTTTTAT
Statistics
Matches: 264, Mismatches: 44, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
368 51 0.19
369 161 0.61
370 48 0.18
371 4 0.02
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (369 bp):
AAATTTACAATGTGATGCACAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAA
ATATTCAAACTCGAATTTCGAGGCGAAGTTCATTACGGAATCAAAGAAAAAGTATATAAATTTTA
AGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCAAACTTCCCATGTATGAATCATTTTAAT
TTCATTATTAAATATTAAAACTCGAATTTCGAGGAAAAGTCCATTAAGAATCAAAGACAAAGTAT
AAATTTTTAAAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTCTG
ATTCTTATTAAGATATAGTGTAAATTTTTAAGATGTTAAAAAGG
Found at i:49339099 original size:653 final size:649
Alignment explanation
Indices: 49337827--49339778 Score: 2410
Period size: 653 Copynumber: 3.0 Consensus size: 649
49337817 ATATAGACTA
* * *
49337827 TAAATTTTTAAAAGGTTAAAATGAAAATTTACAATGTGAT--ACATGACGAAGTTCTTGTGTCTT
1 TAAATTTTTAAGAGGTTAAAAAGGAAATTTACAATGTGATGCACA-GA-GAAGTTCTTGTGTCTT
* * * * * *
49337890 ATGATTCTTTTTAATTTCATTTTTAACTATTGAAACTCGAATTGTGAGGAGAACTCCATTACGAA
64 ATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATT-TTAGGCGAAGTCCGTTACGGA
* * * * *
49337955 ATGAAAGATAAAGTATAAATTTTTAAGACGTTAAAATGGAAATATACCATTTGATGCATAGCACA
128 ATTAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAA
* *
49338020 GTTCTCATGTTTTATGATCTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTAGAGGCAAA
193 CTTCTCATGTTTTATGAT-TTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGC-AA
* * * * *
49338085 GTCGGTTATAGAATCAAAGGTAAAGTATAAAATTTTGAGACGTTCAAATGAAAATTTACCATGTG
256 GTCGGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTG
* *
49338150 ATGCATAGCAAAGTTCTCATGTCTTATGATTCTTTTTAATTTAAATATTAAATATTCAAACTT-G
321 ATGCATAGCAAACTTCTCATGTCTTATGATTCTTTTTAATTTAATTATT-AATATT-AAA-TTCG
* * * *
49338214 AATTTCGAGGCGAAGTTC-ATTACGGGATCAAAGAAAAAGTATATATTTTTTAAGAGGTTAAAAT
383 AATTTCGAGGCGAAG-TCGATTACTGAATCAAAGATAAAGTATA-AATTTTTAAGAGGTTAAAAT
* * * * * *
49338278 GGAAATTTACAATGTGATGCATAGCGAAGTTCTCATG--TATGAATCATTTTAATTTCATTATTA
446 GGAAATTTACAATGTGAAGCACAGCAAAGTTCTCGTGTTTATGAATCTTTTTAATTTCATTTTTA
* * * * * * *
49338341 AATATTGAAACTCGAATTTTGAGGAAAAGTCCATTA-GGAATTATAGACAAAGTATAAGTTTTTA
511 AATATTGAAATTCGAATTTTGAAGCAAAG-CCGTTATGAAATTATAGATAAAGTATAAATTTTTA
* * *
49338405 AAAGGTTAAAATGGAAATTTACTATGCGATGCATAGCAAACTTCTTGGGTCTTCTGATTCTTATT
575 AAAGGTTAAAATGGAAATTTACAATGTGATGCATAGCAAACTTCTCGGGTCTTCTGATTCTT-TT
49338470 AAGATATAGTG
639 AAGATATAGTG
* *
49338481 TAAATTTTTAAGATGTTAAAAAGGAAATTTACAATGTGATGCACAGTGAAGTTCTTGTGTCTTAT
1 TAAATTTTTAAGAGGTTAAAAAGGAAATTTACAATGTGATGCACAGAGAAGTTCTTGTGTCTTAT
* *
49338546 GATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTCTAGGCGAAGTCGGTTATGGAAT
66 GATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTT-TAGGCGAAGTCCGTTACGGAAT
* * *
49338611 TAAAGATAAAATATAAAATTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGCAAACT
130 TAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACT
* * *
49338676 TCCCGTGTTTTATGATTTTTTAATTTCTTTTTTAAATATTAAAATTTGAATTTCGAGGCAACGTC
195 TCTCATGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCAA-GTC
* * *
49338741 GGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTTAAATGGAAATTTA-TATGTGATG
259 GGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATG
* * *
49338805 CATTGCAAACTTCTCATGTTTTATGATT-TTTTCAATTTAATTATTAATATTAGAATTCGAATTT
324 CATAGCAAACTTCTCATGTCTTATGATTCTTTTTAATTTAATTATTAATATTA-AATTCGAATTT
* *
49338869 CGAGGCCAAGTCGATTACTGAATCAAA-ATTAAAGTATAAATTTTTAAGAGGTTAAATTGGAAAT
388 CGAGGCGAAGTCGATTACTGAATCAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAAT
* * * *
49338933 TTAAAATGTGACGCAGAGCAAAGTTCTCGTGTATTATGAATCTTTTTAATTTCATTTTTAAGTAT
452 TTACAATGTGAAGCACAGCAAAGTTCTCGTGT-TTATGAATCTTTTTAATTTCATTTTTAAATAT
*
49338998 TGAAATTAGAATTTTGAAGCAAAGCCCGTTATGAAATTATAGATAAAGTATAAATTTTTAAAAGG
516 TGAAATTCGAATTTTGAAGCAAAG-CCGTTATGAAATTATAGATAAAGTATAAATTTTTAAAAGG
* * * **
49339063 TTAAAATGAAAATTTACCATGTGATGCATAGCAAACTTCTCGGGTCTTATTCTTCTTCTTAAGAT
580 TTAAAATGGAAATTTACAATGTGATGCATAGCAAACTTCTCGGGTCTTCTGATTCTT-TTAAGAT
49339128 ATAGTG
644 ATAGTG
* * * * *
49339134 TAAATTTTTAAGAGGTTAAAAGGGAAATTTACATTGTGATGCATAGAGAAGTGCTCGTGTCTTAT
1 TAAATTTTTAAGAGGTTAAAAAGGAAATTTACAATGTGATGCACAGAGAAGTTCTTGTGTCTTAT
* *
49339199 GATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAAGTCCGTTACGGAAT
66 GATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTT-AGGCGAAGTCCGTTACGGAAT
* * * ** *
49339264 TATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAGTTTACCACGTGATATATGGCAAACT
130 TAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACT
* ** *
49339329 TCTCATGTTTTACGATTTTTTTAATTTCATTTTTAAATATTAAAATCCGAATTTCGAGACTAAGT
195 TCTCATGTTTTATGA-TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGC-AAGT
** * * * * * **
49339394 CGGGAACA-AATCAAATATAAAGTACAAATTTTTAAAAGCTTAAAACAAAAATTTACCATGTGAT
258 CGGTTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGAT
* * * * *
49339458 ACATAGCAAACTTCTCGTGTCTTATGATTCTTTTTAATTTCATTTTTAACTATTAAAACTCGAAT
323 GCATAGCAAACTTCTCATGTCTTATGATTCTTTTTAATTTAATTATTAA-TATT-AAATTCGAAT
* * *
49339523 TTTGAGGCGAACTCCG-TTA-TGAAATGAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
386 TTCGAGGCGAAGT-CGATTACTG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGA
* * * * * *
49339586 AATTTACCATGTGAAGCACAACAAACTACTAGTGTTTTATG-AT-TTTTTAATTTCGTTTTTAAA
449 AATTTACAATGTGAAGCACAGCAAAGTTCTCGTG-TTTATGAATCTTTTTAATTTCATTTTTAAA
* * * * *
49339649 TATTAAAATTCGAA-TTTCAAGGCAAAGTCGATTAT-AGAATCAAAGATACAA-TATAAATTTTT
513 TATTGAAATTCGAATTTTGAA-GCAAAGCCG-TTATGA-AATTATAGATA-AAGTATAAATTTTT
* * * * *
49339711 AACAGGTTAAAATGGAAATTTAAAATGTGATGCATAGCAAAGTTCTCGTGTCTTCTGATTGTTTT
574 AAAAGGTTAAAATGGAAATTTACAATGTGATGCATAGCAAACTTCTCGGGTCTTCTGATTCTTTT
49339776 AAG
639 AAG
49339779 TTTATTTATA
Statistics
Matches: 1124, Mismatches: 147, Indels: 55
0.85 0.11 0.04
Matches are distributed among these distances:
649 56 0.05
650 43 0.04
651 15 0.01
652 89 0.08
653 424 0.38
654 371 0.33
655 25 0.02
656 96 0.09
657 5 0.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (649 bp):
TAAATTTTTAAGAGGTTAAAAAGGAAATTTACAATGTGATGCACAGAGAAGTTCTTGTGTCTTAT
GATTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTAGGCGAAGTCCGTTACGGAATT
AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
CTCATGTTTTATGATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCAAGTCGG
TTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCA
TAGCAAACTTCTCATGTCTTATGATTCTTTTTAATTTAATTATTAATATTAAATTCGAATTTCGA
GGCGAAGTCGATTACTGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC
AATGTGAAGCACAGCAAAGTTCTCGTGTTTATGAATCTTTTTAATTTCATTTTTAAATATTGAAA
TTCGAATTTTGAAGCAAAGCCGTTATGAAATTATAGATAAAGTATAAATTTTTAAAAGGTTAAAA
TGGAAATTTACAATGTGATGCATAGCAAACTTCTCGGGTCTTCTGATTCTTTTAAGATATAGTG
Found at i:49339196 original size:86 final size:86
Alignment explanation
Indices: 49339038--49339198 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 86
49339028 ATGAAATTAT
* *
49339038 AGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAACTTCT
1 AGATAAAGTATAAATTTTTAAAAGGTTAAAAGGAAAATTTACCATGTGATGCATAGCAAACTGCT
49339103 CGGGTCTTATTCTTCTTCTTA
66 CGGGTCTTATTCTTCTTCTTA
* * * * *
49339124 AGATATAGTGTAAATTTTTAAGAGGTTAAAAGGGAAATTTA-CATTGTGATGCATAG-AGAAGTG
1 AGATAAAGTATAAATTTTTAAAAGGTTAAAAGGAAAATTTACCA-TGTGATGCATAGCA-AACTG
*
49339187 CTCGTGTCTTAT
64 CTCGGGTCTTAT
49339199 GATTCTTTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
85 3 0.05
86 62 0.95
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (86 bp):
AGATAAAGTATAAATTTTTAAAAGGTTAAAAGGAAAATTTACCATGTGATGCATAGCAAACTGCT
CGGGTCTTATTCTTCTTCTTA
Found at i:49339310 original size:229 final size:229
Alignment explanation
Indices: 49338905--49339332 Score: 624
Period size: 229 Copynumber: 1.9 Consensus size: 229
49338895 AATTAAAGTA
** *
49338905 TAAATTTTTAAGAGGTTAAATTGGAAATTTAAAATGTGACGCAGAGCAAAGTTCTCGTGTATTAT
1 TAAATTTTTAAGAGGTTAAAAGGGAAATTTAAAATGTGACGCAGAGCAAAGTGCTCGTGTATTAT
* * * *
49338970 GAATCTTTTTAATTTCATTTTTAAGTATTGAAATTAGAATTTTGAAGCAAAGCCCGTTATGAAAT
66 GAATCTTTTTAACTTCATTTTTAAATATTGAAACTAGAATTTTGAAGCAAAGCCCGTTACGAAAT
* *
49339035 TATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCATGTGATGCATAGCAAACT
131 TATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCACGTGATACATAGCAAACT
49339100 TCTCGGGTCTTATTCTTCTTCTTAAGATATAGTG
196 TCTCGGGTCTTATTCTTCTTCTTAAGATATAGTG
* * * * *
49339134 TAAATTTTTAAGAGGTTAAAAGGGAAATTTACATTGTGATGCATAG-AGAAGTGCTCGTGTCTTA
1 TAAATTTTTAAGAGGTTAAAAGGGAAATTTAAAATGTGACGCAGAGCA-AAGTGCTCGTGTATTA
* * * * *
49339198 TGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAAGTCCGTTACGGAA
65 TGAATCTTTTTAACTTCATTTTTAAATATTGAAACTAGAATTTTGAAGCAAAGCCCGTTACGAAA
* * * * *
49339263 TTATAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAGTTTACCACGTGATATATGGCAAAC
130 TTATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCACGTGATACATAGCAAAC
49339328 TTCTC
195 TTCTC
49339333 ATGTTTTACG
Statistics
Matches: 174, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
228 1 0.01
229 173 0.99
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (229 bp):
TAAATTTTTAAGAGGTTAAAAGGGAAATTTAAAATGTGACGCAGAGCAAAGTGCTCGTGTATTAT
GAATCTTTTTAACTTCATTTTTAAATATTGAAACTAGAATTTTGAAGCAAAGCCCGTTACGAAAT
TATAGATAAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACCACGTGATACATAGCAAACT
TCTCGGGTCTTATTCTTCTTCTTAAGATATAGTG
Found at i:49339589 original size:143 final size:143
Alignment explanation
Indices: 49339123--49340635 Score: 1309
Period size: 142 Copynumber: 10.6 Consensus size: 143
49339113 TCTTCTTCTT
* * * *
49339123 AAGATATAGTGTAAATTTTTAAGAGGTTAAAAGGGAAATTTA-CATTGTGATGCATAG-AGAAGT
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA-TGTGATGCATAGCA-AACT
* * * *
49339186 GCTCGTGTCTTATGATTCTTTTTAACTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCAAAG
64 TCTCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAG
*
49339251 TCCGTTACGGAATTA
129 TCCGTTACGAAATTA
* * * ** *
49339266 TAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAGTTTACCACGTGATATATGGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * * *
49339331 TCATGTTTTACGATT-TTTTTAATTTCATTTTTAAATATTAAAA-TCCGAATTTCGAGACTAAGT
66 TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACT-CGAATTTTGAGGCGAAGT
* ** *
49339394 CGGGAAC-AAATCA
130 CCGTTACGAAATTA
* * * * *** *
49339407 AATATAAAGTACAAATTTTTAAAAGCTTAAAACAAAAATTTACCATGTGATACATAGCAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* *
49339472 TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAACTATTAAAACTCGAATTTTGAGGCGAACTC
66 TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTC
* *
49339537 CGTTATGAAATGA
131 CGTTACGAAATTA
* * * *
49339550 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGAAGCACAACAAACTAC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * ** *
49339615 TAGTGTTTTATGA-T-TTTTTAATTTCGTTTTTAAATATTAAAATTCGAATTTCAAGGCAAAGT-
66 TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTC
* *
49339677 CGATTA-TAGAATCA
131 CG-TTACGA-AATTA
* ** *
49339691 AAGATACAA-TATAAATTTTTAACAGGTTAAAATGGAAATTTAAAATGTGATGCATAGCAAAGTT
1 AAGATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
* * * * * * ** *
49339755 CTCGTGTCTTCTGATT-GTTTTAAGTTT-ATTTATAAATATTGAAACTTGAATTTTAAGGCTTAC
65 CTCGTGTCTTATGATTCTTTTTAA-TTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAG
* *
49339818 TTCGTTACGGAATTA
129 TCCGTTACGAAATTA
* * * * *
49339833 AAGATAAAATACAAATTTTTAAGTA-GTTAAAATGGAAATTTACCATGCGATGCATGGAAAACTT
1 AAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
* * * *
49339897 CTTGTGT-TATATGAATCTTTTTAATTTTATTTTTAAATATTAAAACTCAAATTTCATGA--CGA
65 CTCGTGTCT-TATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTT--TGAGGCGA
* ** *
49339959 AGTCGGTTATAAAATCA
127 AGTCCGTTACGAAATTA
* * ** * *
49339976 AAGAAAAAGTTAAAGTATATATTTTTAAGAGGTTAAAATGGAAATTCATAATTTGATGCATAGCG
1 AAG----A--TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA
* * * * * * *
49340041 AAGTTCTCATGTGTTATTATTCTTTTTAATTTAATTTTTTAATATTAAAACTCGAATTTTGAATG
60 AACTTCTCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTG-AGG
* * *
49340106 -GAAGTCTGTTATGGAATTA
124 CGAAGTCCGTTACGAAATTA
* * * * *
49340125 AATATAAAGTTTAAATATTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTG
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * * * * *
49340190 TTGCGTTTTATGATT-TCATTTAATTTTATTTTTAAATATTAAAATTTG-ATTTTCAAGG-GAAC
66 TCGTGTCTTATGATTCT-TTTTAATTTCATTTTTAAATATTAAAACTCGAATTTT-GAGGCGAA-
* *
49340252 GTCGGTTAC-AGAA-TC
128 GTCCGTTACGA-AATTA
* * * *
49340267 AAGATAAATTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-TATGTGATGCATTGCAAACTTA
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* * * * * ** * * * *
49340331 TTGTGTTTTATGA---TTTTTATTTTAATTATTAAATATTAAAGTTCTAATTTCGAAGCCAAGTC
66 TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTC
* *
49340393 AGTTACCAAATTA
131 CGTTACGAAATTA
** * * * *
49340406 AA-ATTAAAGTACCAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATGCATAGCGAAGTT
1 AAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTT
* * * * * * *
49340470 CTCGTGTATTATGAATCTTTTTAATTTTATTTTTAAATATTGAAACTCGAA-TTTAAGGCAAAGC
65 CTCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGT
*
49340534 CCGTTACGGAATTA
130 CCGTTACGAAATTA
* * * *
49340548 TAGATAAAGTATAAATTTTTAAAAGGTTAAAATGGAAATTTACCATGAGATGCATAACAAACTTC
1 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
* *
49340613 TCGGGTCTTATGATTCTTCTTAA
66 TCGTGTCTTATGATTCTTTTTAA
49340636 GATATAGCGT
Statistics
Matches: 1090, Mismatches: 235, Indels: 91
0.77 0.17 0.06
Matches are distributed among these distances:
138 37 0.03
139 45 0.04
140 31 0.03
141 215 0.20
142 340 0.31
143 302 0.28
144 3 0.00
145 3 0.00
147 3 0.00
148 2 0.00
149 108 0.10
150 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (143 bp):
AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC
TCGTGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGCGAAGTC
CGTTACGAAATTA
Done.