Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 156 of 290
Found at i:50208423 original size:18 final size:18
Alignment explanation
Indices: 50208396--50208433 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50208386 CATATCATGA
*
50208396 TGATTTTGGTGGATTTGG
1 TGATTATGGTGGATTTGG
*
50208414 TGATTATGGTGGCTTTGG
1 TGATTATGGTGGATTTGG
50208432 TG
1 TG
50208434 GTGGTGCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.39, T:0.47
Consensus pattern (18 bp):
TGATTATGGTGGATTTGG
Found at i:50210743 original size:22 final size:22
Alignment explanation
Indices: 50210718--50210759 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
50210708 AATGTGGAAG
*
50210718 GATCTAAGTTTAAGTATGTTAA
1 GATCTAAGTTTAAATATGTTAA
50210740 GATCTAAGTTTAAATATGTT
1 GATCTAAGTTTAAATATGTT
50210760 GAAGTGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.43
Consensus pattern (22 bp):
GATCTAAGTTTAAATATGTTAA
Found at i:50216576 original size:47 final size:47
Alignment explanation
Indices: 50216524--50216884 Score: 508
Period size: 47 Copynumber: 7.6 Consensus size: 47
50216514 GATAATTGTG
*
50216524 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50216571 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50216620 ATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAA--AGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50216669 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50216716 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50216765 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
50216812 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
* *
50216859 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
50216885 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 20, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
46 2 0.01
47 146 0.51
48 2 0.01
49 136 0.48
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50216584 original size:49 final size:49
Alignment explanation
Indices: 50216524--50216884 Score: 546
Period size: 49 Copynumber: 7.6 Consensus size: 49
50216514 GATAATTGTG
50216524 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50216571 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50216620 ATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50216669 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50216716 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50216765 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
50216812 ATGTGAAAGTG--TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
50216859 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
50216885 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 15, Indels: 15
0.91 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 139 0.48
48 5 0.02
49 145 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50216635 original size:96 final size:94
Alignment explanation
Indices: 50216524--50216884 Score: 544
Period size: 96 Copynumber: 3.8 Consensus size: 94
50216514 GATAATTGTG
*
50216524 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAGGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
50216589 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATAGCCGATGTGATGA
50216620 ATGTGAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAA-G-GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
50216685 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATAGCCGATGTGATGA
*
50216716 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATAT
1 ATGTG-AAG-GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
50216781 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATAGCCGATGTGATGA
* * * * * * * * *
50216812 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 ATGTGAAGGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50216876 TGTGATAAG
65 TGTGATAAG
50216885 TCCCGAAGGG
Statistics
Matches: 248, Mismatches: 13, Indels: 10
0.92 0.05 0.04
Matches are distributed among these distances:
93 2 0.01
94 53 0.21
95 2 0.01
96 139 0.56
97 2 0.01
98 50 0.20
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
ATGTGAAGGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:50220412 original size:50 final size:50
Alignment explanation
Indices: 50220335--50220476 Score: 158
Period size: 50 Copynumber: 2.8 Consensus size: 50
50220325 ATCCATTGTG
* * * *
50220335 AGTCACGTGTGTAGTATTAAGTACAGGCTACTACGTGTATCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATA
* * * *
50220385 AGTCACGTGTGTAGTACTGAGTGCAGGCTACTATGTTTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATA
* * * * * *
50220435 GGTCGCATTTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
50220477 AAGAGTTTCG
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATA
Found at i:50241667 original size:15 final size:14
Alignment explanation
Indices: 50241647--50241696 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 14
50241637 GAATAGACAT
50241647 AAATAAATAAATAAA
1 AAATAAATAAA-AAA
*
50241662 AAATAAATAAAGAA
1 AAATAAATAAAAAA
* *
50241676 AAATAAA-CAAACA
1 AAATAAATAAAAAA
50241689 AAATAAAT
1 AAATAAAT
50241697 TGGTAAACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 10 0.33
14 9 0.30
15 11 0.37
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (14 bp):
AAATAAATAAAAAA
Found at i:50241679 original size:14 final size:13
Alignment explanation
Indices: 50241647--50241696 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 13
50241637 GAATAGACAT
50241647 AAATAAATAAATAAA
1 AAATAAAT-AA-AAA
50241662 AAATAAATAAAGAA
1 AAATAAATAAA-AA
* *
50241676 AAATAAACAAACA
1 AAATAAATAAAAA
50241689 AAATAAAT
1 AAATAAAT
50241697 TGGTAAACCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 9 0.29
14 14 0.45
15 8 0.26
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (13 bp):
AAATAAATAAAAA
Found at i:50243197 original size:55 final size:53
Alignment explanation
Indices: 50243110--50243343 Score: 230
Period size: 55 Copynumber: 4.4 Consensus size: 53
50243100 ATTAGGGTTT
*
50243110 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
50243165 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * * *
50243220 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
50243273 AAGGATACCATGTAAGACCATGTCAAGACATGGGAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GGAATTGGTAAGTTTCTAAGGC
*
50243322 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
50243344 AAAAGTCATG
Statistics
Matches: 149, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 21 0.14
52 7 0.05
53 37 0.25
54 14 0.09
55 66 0.44
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:50243316 original size:108 final size:110
Alignment explanation
Indices: 50243117--50243317 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
50243107 TTTAAGGATA
* *
50243117 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
50243182 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
50243227 CCATGTAAGACCATGCCAAGGCATGG-CATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
50243289 ACCATGTCAAGACATGGGAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
50243318 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 6 0.07
110 26 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:50250796 original size:55 final size:55
Alignment explanation
Indices: 50250714--50250970 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 55
50250704 ATTAGGGTTT
50250714 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * * *
50250769 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGAT-AGGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTT--TCTAAGGC
* * * *
50250824 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGC
* *
50250877 AAGGATACCATGTAAGACCATGTCAAAACATGGCAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* ** *
50250926 AAGGATACCACGTAAGACCATGAAAAGTCATGGCAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
50250971 ACCCGCATAT
Statistics
Matches: 169, Mismatches: 24, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
49 37 0.22
50 2 0.01
52 7 0.04
53 41 0.24
54 10 0.06
55 67 0.40
56 5 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:50251181 original size:16 final size:16
Alignment explanation
Indices: 50251160--50251190 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50251150 ATAAATTTGA
50251160 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
50251176 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
50251191 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:50264224 original size:27 final size:27
Alignment explanation
Indices: 50264151--50264231 Score: 135
Period size: 28 Copynumber: 3.0 Consensus size: 27
50264141 GTCATGCATA
*
50264151 TCATAGGGGTATATCAGTCATTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
50264178 TCATAAGGGGTATAACAGTCATTTTACC
1 TCAT-AGGGGTATAACAGTCATTTTACC
*
50264206 TCATAGTGGTATAACAGTCATTTTAC
1 TCATAGGGGTATAACAGTCATTTTAC
50264232 TAAATTGGGG
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 25 0.49
28 26 0.51
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCATTTTACC
Found at i:50270239 original size:27 final size:27
Alignment explanation
Indices: 50270201--50270280 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
50270191 GTCATACATG
* *
50270201 TCATAAGGGTATATCAGTCATTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
*
50270228 TCATAGGGGTATAACAGTAATTTTACC
1 TCATAGGGGTATAACAGTCATTTTACC
*
50270255 TCATAGGGGTATAACATTCATTTTAC
1 TCATAGGGGTATAACAGTCATTTTAC
50270281 TAAATTAGGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (27 bp):
TCATAGGGGTATAACAGTCATTTTACC
Found at i:50272580 original size:43 final size:43
Alignment explanation
Indices: 50272532--50272696 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
50272522 TTTCGATATG
50272532 TGATTTCATGTAAGACCATGTCTGGG-TCGTTGGCATCGATTT
1 TGATTTCATGTAAGACCATGTCTGGGATCGTTGGCATCGATTT
* * * **
50272574 GAGATTT-ATGTGTAAGACCATGTCTAGGA-CATCAGCATCG-TATT
1 -TGATTTCA--TGTAAGACCATGTCTGGGATCGTTGGCATCGAT-TT
* * * * *
50272618 TGATTTCGTGTAAGACCCTTTCTGGGATAG-TGGCATCTATATT
1 TGATTTCATGTAAGACCATGTCTGGGATCGTTGGCATCGAT-TT
* *
50272661 TGATTACATGTAAGACCACGTCTGGGAT-GTTGGCAT
1 TGATTTCATGTAAGACCATGTCTGGGATCGTTGGCAT
50272697 TGTACCAGCT
Statistics
Matches: 94, Mismatches: 20, Indels: 16
0.72 0.15 0.12
Matches are distributed among these distances:
42 23 0.24
43 44 0.47
44 27 0.29
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGATCGTTGGCATCGATTT
Found at i:50282567 original size:68 final size:65
Alignment explanation
Indices: 50282451--50282703 Score: 210
Period size: 68 Copynumber: 3.8 Consensus size: 65
50282441 ATACAGATGG
* ** * * * *
50282451 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGTGTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTATACAAGAGAGCTACGAGA-A
50282515 TTA
64 -TA
* *
50282518 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTATACAAGAGAGCTAAGAG-AT
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTATACAAGAGAGCTACGAGAAT
50282582 A
65 A
* * * * * * *
50282583 TTTGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAG-
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTATACAAGAGAGCTACGAGA
50282647 ATA
63 ATA
* * * * *
50282650 AACTG-A-CTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTATACAAGAGAGC
50282704 CAAAATTATG
Statistics
Matches: 150, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
63 19 0.13
64 24 0.16
65 3 0.02
66 21 0.14
67 32 0.21
68 51 0.34
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (65 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTATACAAGAGAGCTACGAGAATA
Found at i:50283763 original size:82 final size:82
Alignment explanation
Indices: 50283626--50283788 Score: 326
Period size: 82 Copynumber: 2.0 Consensus size: 82
50283616 AATATTCCGG
50283626 GAACATATTGTGACTTTGTTTAAAGTATGATAATGTATTTTTTATTAATATTTACATACTTACTT
1 GAACATATTGTGACTTTGTTTAAAGTATGATAATGTATTTTTTATTAATATTTACATACTTACTT
50283691 ACTAAGCTATAATTCTA
66 ACTAAGCTATAATTCTA
50283708 GAACATATTGTGACTTTGTTTAAAGTATGATAATGTATTTTTTATTAATATTTACATACTTACTT
1 GAACATATTGTGACTTTGTTTAAAGTATGATAATGTATTTTTTATTAATATTTACATACTTACTT
50283773 ACTAAGCTATAATTCT
66 ACTAAGCTATAATTCT
50283789 TATTCCCTTC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 81 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.47
Consensus pattern (82 bp):
GAACATATTGTGACTTTGTTTAAAGTATGATAATGTATTTTTTATTAATATTTACATACTTACTT
ACTAAGCTATAATTCTA
Found at i:50287746 original size:41 final size:41
Alignment explanation
Indices: 50287689--50287773 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
50287679 CTAATTTGAT
50287689 AATTAGACCATTATATCTAAGTTTGGACAAAAATGGGCAAG
1 AATTAGACCATTATATCTAAGTTTGGACAAAAATGGGCAAG
50287730 AATTAGACCATTATATCTAAGTTTGGACAAAAATGGGCAAG
1 AATTAGACCATTATATCTAAGTTTGGACAAAAATGGGCAAG
50287771 AAT
1 AAT
50287774 AGGACAAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (41 bp):
AATTAGACCATTATATCTAAGTTTGGACAAAAATGGGCAAG
Found at i:50289175 original size:47 final size:47
Alignment explanation
Indices: 50289113--50289230 Score: 173
Period size: 47 Copynumber: 2.5 Consensus size: 47
50289103 TGGCACTAAG
* *
50289113 ACAAGGATACTATGTAAGACCATGTTTGGAACATGACATTTGGTAAA
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGATAAA
* * *
50289160 ACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGATAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGATAAA
* *
50289207 ATAAGGATATCATGTAAGACCATG
1 ACAAGGATACCATGTAAGACCATG
50289231 CCAAGGCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (47 bp):
ACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGATAAA
Found at i:50289273 original size:54 final size:54
Alignment explanation
Indices: 50289215--50289392 Score: 227
Period size: 55 Copynumber: 3.3 Consensus size: 54
50289205 AGATAAGGAT
*
50289215 ATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGTA
1 ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGTA
* * *
50289269 ATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGACAAAGGT-
1 ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC-AAGGTA
** * *
50289324 CCCATGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTC-ATAAGGCAAGG-A
1 ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGTA
*
50289376 TATCACGTAAGACCATG
1 -ATCATGTAAGACCATG
50289393 TCAGGACATG
Statistics
Matches: 106, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
52 4 0.04
53 19 0.18
54 37 0.35
55 41 0.39
56 5 0.05
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (54 bp):
ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAGGTA
Found at i:50289338 original size:55 final size:53
Alignment explanation
Indices: 50289209--50289402 Score: 228
Period size: 54 Copynumber: 3.6 Consensus size: 53
50289199 TTGATAAGAT
* *
50289209 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGG-TATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
50289263 AAGGTAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGAC
1 AAGGT-ATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
** ** *
50289318 AAAGGTCCCATGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGTATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
50289371 AAGGATATCACGTAAGACCATGTCAGGACATG
1 AAGG-TATCATGTAAGACCATGCCAAGACATG
50289403 AAAATGGTAA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 27 0.23
54 41 0.35
55 41 0.35
56 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGTATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:50295990 original size:54 final size:54
Alignment explanation
Indices: 50295930--50296103 Score: 174
Period size: 55 Copynumber: 3.2 Consensus size: 54
50295920 AAGGATATCT
* *
50295930 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGAAAATCA
1 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGAAAACCA
** * ***
50295984 TGTAAGACCATGTTAAGACATGGCATTGATGAA-TTACTATAAGGCAA-AGGGCCCA
1 TGTAAGACCATGCCAAGGCATGGCATTGAT-AAGTT-CTATAAGGCAAGA-AAACCA
* * * * *
50296039 TGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCA
1 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGAAAACCA
*
50296092 CGTAAGACCATG
1 TGTAAGACCATG
50296104 TGAAGACATG
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
53 23 0.24
54 32 0.33
55 41 0.43
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGAAAACCA
Found at i:50301007 original size:29 final size:29
Alignment explanation
Indices: 50300974--50301047 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50300964 GTTGTGAGAT
* *
50300974 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
50301003 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
50301032 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50301048 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:50307263 original size:46 final size:46
Alignment explanation
Indices: 50307196--50307324 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
50307186 TGTAACCCGC
* * * * *
50307196 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50307242 CCATAAGTGAACTCGGACTCAACTGAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50307288 CCATAAGTGAACTCGGACTCAAGTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50307325 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50309755 original size:30 final size:30
Alignment explanation
Indices: 50309711--50309799 Score: 108
Period size: 30 Copynumber: 3.0 Consensus size: 30
50309701 CAAAGATAAT
50309711 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* * *
50309740 GAGAAACCCAGAATAAAGAAATCCAAAATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* * * *
50309770 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
50309800 CGATATTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 7 0.14
30 43 0.86
ACGTcount: A:0.58, C:0.16, G:0.16, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:50309759 original size:15 final size:15
Alignment explanation
Indices: 50309711--50309790 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
50309701 CAAAGATAAT
*
50309711 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
50309725 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
50309740 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
50309755 AAGAAATCCAAAATA
1 AAGAAATCCAGAATA
* *
50309770 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
50309785 AAGAAA
1 AAGAAA
50309791 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 43 0.81
16 1 0.02
ACGTcount: A:0.60, C:0.14, G:0.16, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:50309799 original size:15 final size:15
Alignment explanation
Indices: 50309722--50309799 Score: 86
Period size: 15 Copynumber: 5.2 Consensus size: 15
50309712 AGAAAACCGA
50309722 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
50309737 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
50309751 AATAAAGAAATCCAAA
1 -ATAAAGAAATCCAAG
* *
50309767 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAAG
*
50309782 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50309797 ATA
1 ATA
50309800 CGATATTATG
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
14 4 0.08
15 43 0.86
16 3 0.06
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50312683 original size:93 final size:93
Alignment explanation
Indices: 50312555--50312725 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
50312545 GCCCATAAGT
* * *
50312555 GAACTCGGACTCAACTCAATGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50312620 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50312648 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50312713 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50312726 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50312722 original size:46 final size:46
Alignment explanation
Indices: 50312547--50312722 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50312537 TGTAACCCGC
* * * *
50312547 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50312593 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
50312643 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
50312686 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50312723 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50314990 original size:40 final size:40
Alignment explanation
Indices: 50314854--50314994 Score: 205
Period size: 40 Copynumber: 3.5 Consensus size: 40
50314844 CGGATGTAAC
* *
50314854 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATTCCTTCGGGACTTAACCCGGTTATAAT
*
50314894 AACCCGCACGAATACCTTTC-GGACTTAACCCGGTTATAAT
1 AACCCGCACGAATTCC-TTCGGGACTTAACCCGGTTATAAT
50314934 AACCCGCACGAATTCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATTCCTTCGGGACTTAACCCGGTTATAAT
**
50314974 AACTAGCAC-AATTTCCTTCGG
1 AACCCGCACGAA-TTCCTTCGG
50314995 ATCTTAGTCC
Statistics
Matches: 93, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
39 5 0.05
40 85 0.91
41 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (40 bp):
AACCCGCACGAATTCCTTCGGGACTTAACCCGGTTATAAT
Found at i:50324836 original size:41 final size:42
Alignment explanation
Indices: 50324729--50324873 Score: 148
Period size: 41 Copynumber: 3.4 Consensus size: 42
50324719 ATATTGTACA
* * * *
50324729 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-CTAATCAAATATCG
* * * * *
50324772 ATTCCACTATCCCAGACAAGGTCTTACACAAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACTAATCAAATATCG
*
50324813 ATGCCAATGTACCAGACATGGTCTTACACGTAATCACATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-TAATCA-A-ATATCG
*
50324858 ATGCTAATGTCCCAGA
1 ATGCCAATGTCCCAGA
50324874 TGTGATCTTA
Statistics
Matches: 81, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
41 26 0.32
42 13 0.16
43 23 0.28
44 3 0.04
45 16 0.20
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACTAATCAAATATCG
Found at i:50324873 original size:45 final size:44
Alignment explanation
Indices: 50324729--50324887 Score: 164
Period size: 45 Copynumber: 3.7 Consensus size: 44
50324719 ATATTGTACA
* * *
50324729 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATCG
* * * * *
50324772 ATTCCACTATCCCAGACAAGGTCTTACAC-AAATCA-AATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATCG
*
50324813 ATGCCAATGTACCAGACATGGTCTTACACGTAATCACATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
* ** *
50324858 ATGCTAATGTCCCAGATGTGATCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
50324888 AGAACACATG
Statistics
Matches: 92, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 26 0.28
42 13 0.14
43 23 0.25
44 3 0.03
45 27 0.29
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATATCG
Found at i:50324896 original size:45 final size:45
Alignment explanation
Indices: 50324811--50324896 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
50324801 AAATCAAATA
* *
50324811 CGATGCCAATGTACCAGACATGGTCTTACACGTAATCACATATAT
1 CGATGCCAATGTACCAGACATGATCTTACACGTAAACACATATAT
* * **
50324856 CGATGCTAATGTCCCAGATGTGATCTTACACG-AGAACACAT
1 CGATGCCAATGTACCAGACATGATCTTACACGTA-AACACAT
50324897 GTCGGAGATC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 1 0.03
45 33 0.97
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (45 bp):
CGATGCCAATGTACCAGACATGATCTTACACGTAAACACATATAT
Found at i:50332043 original size:19 final size:19
Alignment explanation
Indices: 50332019--50332058 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
50332009 AAAACTCAAA
50332019 AGATTGATTATGAGATAAT
1 AGATTGATTATGAGATAAT
50332038 AGATTGATTATGAGATAAT
1 AGATTGATTATGAGATAAT
50332057 AG
1 AG
50332059 CAAAATGAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (19 bp):
AGATTGATTATGAGATAAT
Found at i:50337136 original size:89 final size:89
Alignment explanation
Indices: 50337012--50337189 Score: 320
Period size: 89 Copynumber: 2.0 Consensus size: 89
50337002 AGGGGTAATT
50337012 TGTAAACCGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
1 TGTAAACCGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
*
50337077 TTTGATTTTATATAGATCAAGAAA
66 TTTGAATTTATATAGATCAAGAAA
* * *
50337101 TGTAAACTGCCCTAAATGTGTGTTTGTGGATTGATTTGAGTGATTTGGTGAATAAAATAGTTAAA
1 TGTAAACCGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
50337166 TTTGAATTTATATAGATCAAGAAA
66 TTTGAATTTATATAGATCAAGAAA
50337190 CAAAGAAAAC
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (89 bp):
TGTAAACCGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
TTTGAATTTATATAGATCAAGAAA
Found at i:50345396 original size:15 final size:15
Alignment explanation
Indices: 50345358--50345423 Score: 80
Period size: 15 Copynumber: 4.3 Consensus size: 15
50345348 ATTTCACTAT
50345358 AGTTTCATAATCTATA
1 AGTTTCATAATCTA-A
50345374 TA-TTTCATAATCTAA
1 -AGTTTCATAATCTAA
* *
50345389 AGTTTCATAGTCTAT
1 AGTTTCATAATCTAA
*
50345404 AGTTTCACAATCTAA
1 AGTTTCATAATCTAA
50345419 AGTTT
1 AGTTT
50345424 TAGTATATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
14 1 0.02
15 29 0.67
16 12 0.28
17 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (15 bp):
AGTTTCATAATCTAA
Found at i:50345416 original size:30 final size:31
Alignment explanation
Indices: 50345358--50345423 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 31
50345348 ATTTCACTAT
*
50345358 AGTTTCATAATCTATATATTTCATAATCTAA
1 AGTTTCATAATCTATATATTTCACAATCTAA
* *
50345389 AGTTTCATAGTCTATA-GTTTCACAATCTAA
1 AGTTTCATAATCTATATATTTCACAATCTAA
50345419 AGTTT
1 AGTTT
50345424 TAGTATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 17 0.53
31 15 0.47
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.44
Consensus pattern (31 bp):
AGTTTCATAATCTATATATTTCACAATCTAA
Found at i:50348055 original size:39 final size:39
Alignment explanation
Indices: 50347976--50348229 Score: 383
Period size: 39 Copynumber: 6.6 Consensus size: 39
50347966 AAACCAAGTA
** * *
50347976 CCTTCGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
50348014 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
50348053 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCAC-AATG
1 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
50348091 CCTTCGGGACTT-GCCCGGTTATAGTAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATG
50348130 CCTTCGGACTTAGCCCGG-TATAGTAACTCGCACAAATG
1 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
50348168 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
50348208 CCTTCGGGCTTAGCCCGGTTAT
1 CCTTCGGACTTAGCCCGGTTAT
50348230 CAATCCGAAT
Statistics
Matches: 201, Mismatches: 8, Indels: 13
0.91 0.04 0.06
Matches are distributed among these distances:
38 73 0.36
39 103 0.51
40 25 0.12
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:50348107 original size:77 final size:79
Alignment explanation
Indices: 50347976--50348229 Score: 394
Period size: 77 Copynumber: 3.3 Consensus size: 79
50347966 AAACCAAGTA
** * *
50347976 CCTTCGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTC-GGACTTAGCCCGGTTATAG
1 CCTTCGGACTTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
50348038 TAACTCGCACAATTG
65 TAACTCGCACAAATG
50348053 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTT-GCCCGGTTATAGT
1 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
50348116 AACTCGCACAAATG
66 AACTCGCACAAATG
*
50348130 CCTTCGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
50348194 AACTCGCACAAATG
66 AACTCGCACAAATG
*
50348208 CCTTCGGGCTTAGCCCGGTTAT
1 CCTTCGGACTTAGCCCGGTTAT
50348230 CAATCCGAAT
Statistics
Matches: 164, Mismatches: 7, Indels: 10
0.91 0.04 0.06
Matches are distributed among these distances:
76 15 0.09
77 81 0.49
78 65 0.40
79 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGT
AACTCGCACAAATG
Found at i:50356150 original size:40 final size:40
Alignment explanation
Indices: 50356081--50356300 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
50356071 AAACCAAGTA
* * *
50356081 CCTTCGGG-TTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
50356119 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
50356159 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
50356199 CCTTCGGGACTTGGCCTGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
50356239 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
50356279 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
50356301 CAATCCGAAT
Statistics
Matches: 164, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 8 0.05
39 17 0.10
40 139 0.85
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:50359948 original size:28 final size:28
Alignment explanation
Indices: 50359896--50359950 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
50359886 TATATTAATA
*
50359896 AAATATGTATTATTTAATATTTAAGTAT
1 AAATATGTATTATTAAATATTTAAGTAT
50359924 AAATAT-TA-TATTAAATTATTATAAGTA
1 AAATATGTATTATTAAA-TATT-TAAGTA
50359951 AATGAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 6 0.25
27 6 0.25
28 12 0.50
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (28 bp):
AAATATGTATTATTAAATATTTAAGTAT
Found at i:50359993 original size:19 final size:20
Alignment explanation
Indices: 50359971--50360009 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
50359961 TAAATAACAT
50359971 AAAAACAATT-AAAAGAAAC
1 AAAAACAATTGAAAAGAAAC
*
50359990 -AAAAGAATTGAAAAGAAAC
1 AAAAACAATTGAAAAGAAAC
50360009 A
1 A
50360010 GAAGGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 3
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (20 bp):
AAAAACAATTGAAAAGAAAC
Found at i:50360293 original size:28 final size:28
Alignment explanation
Indices: 50360261--50360324 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
50360251 AATTGAAGAA
50360261 TAAATTGTAAATTTTGAGTAATAGGGAC
1 TAAATTGTAAATTTTGAGTAATAGGGAC
50360289 TAAATTGTAAATTTTGAGTAATAGGGAC
1 TAAATTGTAAATTTTGAGTAATAGGGAC
50360317 TAAATTGT
1 TAAATTGT
50360325 GAAAAATATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.38
Consensus pattern (28 bp):
TAAATTGTAAATTTTGAGTAATAGGGAC
Found at i:50361023 original size:37 final size:38
Alignment explanation
Indices: 50360923--50361025 Score: 100
Period size: 37 Copynumber: 2.7 Consensus size: 38
50360913 AACTTCAAGT
* **
50360923 CGATGAGACACTAGGTGTCAATTTACTACTTTAGATTAATT
1 CGATGAGACACTAGGTGTCAA-TT--TACTTCAGATTAAGC
* * * * *
50360964 CGATGAGGCAGTAAGTGCCAATTTACTTCAG-TTTAGC
1 CGATGAGACACTAGGTGTCAATTTACTTCAGATTAAGC
50361001 CGATGAGACACTAGGTGTCAATTTA
1 CGATGAGACACTAGGTGTCAATTTA
50361026 TTACTTCAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 24 0.48
38 7 0.14
40 2 0.04
41 17 0.34
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (38 bp):
CGATGAGACACTAGGTGTCAATTTACTTCAGATTAAGC
Found at i:50361044 original size:40 final size:40
Alignment explanation
Indices: 50360923--50361057 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 40
50360913 AACTTCAAGT
* * *
50360923 CGATGAGACACTAGGTGTCAATTTACTACTTTAGATTAATT
1 CGATGAGACACTAGGTGTCAATTTATTACTTCAGATT-ATC
* * * * * *
50360964 CGATGAGGCAGTAAGTGCCAA--T-TTACTTCAGTTTAGC
1 CGATGAGACACTAGGTGTCAATTTATTACTTCAGATTATC
*
50361001 CGATGAGACACTAGGTGTCAATTTATTACTTCAAATTATC
1 CGATGAGACACTAGGTGTCAATTTATTACTTCAGATTATC
* *
50361041 CGATGTGGCACTAGGTG
1 CGATGAGACACTAGGTG
50361058 CCAAACTGAT
Statistics
Matches: 73, Mismatches: 18, Indels: 7
0.74 0.18 0.07
Matches are distributed among these distances:
37 18 0.25
38 9 0.12
39 2 0.03
40 27 0.37
41 17 0.23
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAATTTATTACTTCAGATTATC
Found at i:50367792 original size:25 final size:26
Alignment explanation
Indices: 50367744--50367802 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
50367734 TTTAATTCAC
* *
50367744 AAAATTTATTAATAATTCAGTAAACTG
1 AAAATTTA-TAATAATTCAATAAAATG
* *
50367771 AAAATTTA-AATAATTGAATAAAATT
1 AAAATTTATAATAATTCAATAAAATG
50367796 AAAATTT
1 AAAATTT
50367803 GGGAGAAAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 20 0.71
27 8 0.29
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.37
Consensus pattern (26 bp):
AAAATTTATAATAATTCAATAAAATG
Found at i:50369251 original size:46 final size:46
Alignment explanation
Indices: 50369198--50369334 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
50369188 TATATATACA
* *
50369198 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
* *
50369244 CATCTCATACATGTTTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
50369290 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
50369335 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.35
Consensus pattern (46 bp):
CATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:50369370 original size:47 final size:47
Alignment explanation
Indices: 50369314--50369549 Score: 303
Period size: 47 Copynumber: 4.9 Consensus size: 47
50369304 TTCGCATTAG
* *
50369314 CCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGC
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGC
* * *
50369361 CCATTCGGCCTTATCTCATATATGCATGTCCACATTCATCACATTGG
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGC
* *
50369408 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT-C
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGC
* * * *
50369454 GCCATTCGGCTTTATCACGCATATATATACAGGTTCACATTCATCACATTGG
1 -CCATTCGGCCTTATCA--C--ATATATGCATGTTCACATTCATCACATTGC
* *
50369506 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
50369550 AAAATCCTAA
Statistics
Matches: 162, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
47 121 0.75
49 2 0.01
51 39 0.24
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGC
Found at i:50369517 original size:98 final size:94
Alignment explanation
Indices: 50369308--50369549 Score: 342
Period size: 98 Copynumber: 2.5 Consensus size: 94
50369298 ACACATTTCG
* * * **
50369308 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGCCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGCCCATTCGGCCTT
* * *
50369373 ATCTCATATATGCATGTCCACATTCATCA
66 ATCGCATATATACAGGTCCACATTCATCA
*
50369402 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT-CGCCATTCGGCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGC-CCATTCGGCCT
*
50369466 TATCACGCATATATATACAGGTTCACATTCATCA
65 TAT--CGC--ATATATACAGGTCCACATTCATCA
50369500 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
50369550 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
93 1 0.01
94 59 0.44
96 2 0.02
98 71 0.53
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGCCCATTCGGCCTT
ATCGCATATATACAGGTCCACATTCATCA
Found at i:50381593 original size:159 final size:159
Alignment explanation
Indices: 50381312--50381629 Score: 609
Period size: 159 Copynumber: 2.0 Consensus size: 159
50381302 TTACTTCAGC
50381312 CTATTACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTA
1 CTATTACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTA
* *
50381377 TCGACAAGTAAGAAAATTGTTGTTTGGGTGATTGTTGATCGACTTACGAAATCGGCTCATTTTAT
66 TCGACAAGTAAGAAAAATGCTGTTTGGGTGATTGTTGATCGACTTACGAAATCGGCTCATTTTAT
50381442 TGCAGTCAGGATTGATTGGTCACTTCATT
131 TGCAGTCAGGATTGATTGGTCACTTCATT
50381471 CTATTACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTA
1 CTATTACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTA
*
50381536 TCGGCAAGTAAGAAAAATGCTGTTTGGGTGATTGTTGATCGACTTACGAAATCGGCTCATTTTAT
66 TCGACAAGTAAGAAAAATGCTGTTTGGGTGATTGTTGATCGACTTACGAAATCGGCTCATTTTAT
50381601 TGCAGTCAGGATTGATTGGTCACTTCATT
131 TGCAGTCAGGATTGATTGGTCACTTCATT
50381630 TATATTCAAG
Statistics
Matches: 156, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
159 156 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.36
Consensus pattern (159 bp):
CTATTACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTA
TCGACAAGTAAGAAAAATGCTGTTTGGGTGATTGTTGATCGACTTACGAAATCGGCTCATTTTAT
TGCAGTCAGGATTGATTGGTCACTTCATT
Found at i:50383979 original size:43 final size:43
Alignment explanation
Indices: 50383929--50384085 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
50383919 TATCCCAGAT
* * *
50383929 ATGGTCTTACATGTTATAACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACACGTAATAACATATCGATGCCAATGTCCTAGAC
* * *
50383972 AGGGTCTTACACGAAATCAA-TTAAT-GATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAAT-AACAT-ATCGATGCCAATGTCCTAGAC
** * *
50384015 ATGGTCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATAACATAT-CGATGCCAATGTCCTAGAC
* * *
50384058 ATGGTCTTACATGTAATCACATCTCGAT
1 ATGGTCTTACACGTAATAACATATCGAT
50384086 AACCTAATGT
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.02
43 84 0.92
44 5 0.05
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGTAATAACATATCGATGCCAATGTCCTAGAC
Found at i:50385532 original size:45 final size:45
Alignment explanation
Indices: 50385471--50385562 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
50385461 TAGGATTCTG
*
50385471 ATATATGTTTTCGTGTAAGACCACGTCTAGGATGTTGGCATCGAT
1 ATATATGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
* *
50385516 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATATGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
50385561 AT
1 AT
50385563 TACGAGTAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (45 bp):
ATATATGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
Found at i:50388460 original size:14 final size:14
Alignment explanation
Indices: 50388441--50388468 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50388431 CTTTATTCCT
50388441 TCCCATGAGTGACA
1 TCCCATGAGTGACA
50388455 TCCCATGAGTGACA
1 TCCCATGAGTGACA
50388469 CTATCGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (14 bp):
TCCCATGAGTGACA
Found at i:50390721 original size:46 final size:46
Alignment explanation
Indices: 50390671--50390846 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50390661 TGGTTGAGCA
50390671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50390717 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
50390762 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50390810 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50390847 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50390827 original size:93 final size:93
Alignment explanation
Indices: 50390668--50390839 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50390658 GGATGGTTGA
* *
50390668 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50390733 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
50390761 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50390826 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
50390840 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50394964 original size:46 final size:46
Alignment explanation
Indices: 50394914--50395089 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50394904 TGGTTGAGCA
50394914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50394960 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
50395005 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50395053 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50395090 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50395070 original size:93 final size:93
Alignment explanation
Indices: 50394911--50395082 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50394901 GGATGGTTGA
* *
50394911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50394976 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
50395004 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50395069 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
50395083 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50399187 original size:46 final size:46
Alignment explanation
Indices: 50399137--50399312 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
50399127 TGGTTGAGCA
50399137 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50399183 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
50399228 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50399276 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50399313 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 63 0.56
47 29 0.26
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50399293 original size:93 final size:93
Alignment explanation
Indices: 50399134--50399305 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
50399124 GGATGGTTGA
*
50399134 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
50399199 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
50399227 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
50399292 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
50399306 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50412055 original size:27 final size:27
Alignment explanation
Indices: 50411926--50412081 Score: 138
Period size: 27 Copynumber: 5.8 Consensus size: 27
50411916 ACCCCCGACC
** * **
50411926 TGTAAAATTATTGAAATACCCCCGGGT
1 TGTAAAATTATCAAAATACCCTCGATT
*
50411953 TGTAAAATTA-CTAAAATACCTTCGATT
1 TGTAAAATTATC-AAAATACCCTCGATT
* * * * *
50411980 TGTGAAATTTTCCAAATACCCCCGACT
1 TGTAAAATTATCAAAATACCCTCGATT
50412007 TGTAAAATTA-CTAAAATACCCTCGATT
1 TGTAAAATTATC-AAAATACCCTCGATT
* *
50412034 TGTAAAATTATCAAAATACCCT-TATAG
1 TGTAAAATTATCAAAATACCCTCGAT-T
*
50412061 TGTAAAATTACCAAAATACCC
1 TGTAAAATTATCAAAATACCC
50412082 CTATATGGTA
Statistics
Matches: 104, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.03
27 99 0.95
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TGTAAAATTATCAAAATACCCTCGATT
Found at i:50412069 original size:81 final size:80
Alignment explanation
Indices: 50411916--50412082 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 80
50411906 GGTCGTTAAG
* * * *
50411916 ACCCCCGACCTGTAAAATTATTGAAATACCCCCGGGTTGTAAAATTACTAAAATACCTTCGATTT
1 ACCCCCGACCTGTAAAATTACTAAAATACCCCCGAGTTGTAAAATTACTAAAATACCTTC-ATGT
* *
50411981 GTGAAATTTTCC-AAAT
65 GT-AAAATTACCAAAAT
* * *
50411997 ACCCCCGACTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTA-TCAAAATACCCTT-ATA
1 ACCCCCGACCTGTAAAATTACTAAAATACCCCCGAGTTGTAAAATTACT-AAAATA-CCTTCAT-
50412060 GTGTAAAATTACCAAAAT
63 GTGTAAAATTACCAAAAT
50412078 ACCCC
1 ACCCC
50412083 TATATGGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
80 10 0.14
81 59 0.81
82 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (80 bp):
ACCCCCGACCTGTAAAATTACTAAAATACCCCCGAGTTGTAAAATTACTAAAATACCTTCATGTG
TAAAATTACCAAAAT
Found at i:50412081 original size:54 final size:54
Alignment explanation
Indices: 50411926--50412054 Score: 186
Period size: 54 Copynumber: 2.4 Consensus size: 54
50411916 ACCCCCGACC
** ** *
50411926 TGTAAAATTATTGAAATACCCCCGGGTTGTAAAATTACTAAAATACCTTCGATT
1 TGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
* * *
50411980 TGTGAAATTTTCCAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
1 TGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
50412034 TGTAAAATTATCAAAATACCC
1 TGTAAAATTATCAAAATACCC
50412055 TTATAGTGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAATACCCTCGATT
Found at i:50412086 original size:27 final size:26
Alignment explanation
Indices: 50412007--50412095 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 26
50411997 ACCCCCGACT
* * *
50412007 TGTAAAATTACTAAAATACCCTCGATT
1 TGTAAAATTACCAAAATACCC-CTATA
* *
50412034 TGTAAAATTATCAAAATACCCTTATA
1 TGTAAAATTACCAAAATACCCCTATA
50412060 GTGTAAAATTACCAAAATACCCCTATA
1 -TGTAAAATTACCAAAATACCCCTATA
50412087 TGGTAAAAT
1 T-GTAAAAT
50412096 AATTGTTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (26 bp):
TGTAAAATTACCAAAATACCCCTATA
Found at i:50424878 original size:28 final size:28
Alignment explanation
Indices: 50424832--50424885 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
50424822 ACAGTAATAA
* * * *
50424832 AATAGTTTGGGCTTTAGCCCTATACAGT
1 AATAGTGTGGGCCTAAGCCCAATACAGT
50424860 AATAGTGTGGGCCTAAGCCCAATACA
1 AATAGTGTGGGCCTAAGCCCAATACA
50424886 ATATCAGTAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (28 bp):
AATAGTGTGGGCCTAAGCCCAATACAGT
Found at i:50425114 original size:27 final size:26
Alignment explanation
Indices: 50425049--50425129 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 26
50425039 ATCTAGCAGA
* * *
50425049 AACAGTAAATGTGGCA-AACCTCTAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
*
50425075 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
50425102 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
50425129 A
1 A
50425130 GAGTACTTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.04
26 12 0.27
27 29 0.64
28 2 0.04
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:50425304 original size:27 final size:27
Alignment explanation
Indices: 50425274--50425330 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
50425264 ATAATTGCCT
*
50425274 TTTTACCATACAAGGGTATTACGGTCA
1 TTTTACCATACAAGGGTATTACAGTCA
* *
50425301 TTTTACCCTACAGGGGTATTACAGTCA
1 TTTTACCATACAAGGGTATTACAGTCA
50425328 TTT
1 TTT
50425331 CACAAACTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
TTTTACCATACAAGGGTATTACAGTCA
Found at i:50425482 original size:54 final size:52
Alignment explanation
Indices: 50425313--50425482 Score: 171
Period size: 54 Copynumber: 3.2 Consensus size: 52
50425303 TTACCCTACA
* * * * * *
50425313 GGGGTATTACAGTCATTTCACAAACTAGGGGTATTTTAGTAA-TTCACAAATT
1 GGGGTATTTCAATAATTTCACAAATTAGGGGTA-TTTGGTAATTTTACAAATT
* * * * *
50425365 AGTGGTATTTCGATAATTTTACAAATTAGGGGTATTTCGGTAATTTTACAAGTC
1 -GGGGTATTTCAATAATTTCACAAATTAGGGGTATTT-GGTAATTTTACAAATT
*
50425419 GGGCCTATTTCAATAATTTCACAAATTAGGGGGTATTTGGTAATTTTACAAATT
1 GGG-GTATTTCAATAATTTCACAAATTA-GGGGTATTTGGTAATTTTACAAATT
50425473 GGAGGTATTT
1 GG-GGTATTT
50425483 TGGTAGTTTT
Statistics
Matches: 94, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
52 3 0.03
53 32 0.34
54 49 0.52
55 10 0.11
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (52 bp):
GGGGTATTTCAATAATTTCACAAATTAGGGGTATTTGGTAATTTTACAAATT
Found at i:50425484 original size:27 final size:26
Alignment explanation
Indices: 50425313--50425503 Score: 134
Period size: 27 Copynumber: 7.2 Consensus size: 26
50425303 TTACCCTACA
* * * * *
50425313 GGGGTATTACAGTCATTTCACAAACTA
1 GGGGTATTTCGGTAATTTTACAAA-TT
** *
50425340 GGGGTATTTTAGTAA-TTCACAAATT
1 GGGGTATTTCGGTAATTTTACAAATT
* *
50425365 AGTGGTATTTCGATAATTTTACAAATT
1 -GGGGTATTTCGGTAATTTTACAAATT
* *
50425392 AGGGGTATTTCGGTAATTTTACAAGTC
1 -GGGGTATTTCGGTAATTTTACAAATT
* ** *
50425419 GGGCCTATTTCAATAATTTCACAAATT
1 GGG-GTATTTCGGTAATTTTACAAATT
50425446 AGGGGGTATTT-GGTAATTTTACAAATT
1 --GGGGTATTTCGGTAATTTTACAAATT
* * *
50425473 GGAGGTATTTTGGTAGTTTTACAAATC
1 GG-GGTATTTCGGTAATTTTACAAATT
50425500 GGGG
1 GGGG
50425504 CCTTAACGAC
Statistics
Matches: 132, Mismatches: 25, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
25 3 0.02
26 31 0.23
27 90 0.68
28 5 0.04
29 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGGTATTTCGGTAATTTTACAAATT
Found at i:50429025 original size:44 final size:43
Alignment explanation
Indices: 50428962--50429084 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 43
50428952 TATCACATAT
* * * * * *
50428962 CGATGCCACTATCCTAGACAAGGTCTTACATGAAAT-TGACTTAA
1 CGATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCA-AT-A
* *
50429006 CGATGCCAATGTCCCAGACATGGT-TTACACGTAATCTCAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCAATA
* * *
50429048 CAATGCCAATGTTCCAGACATGGTCTTACATGTAATC
1 CGATGCCAATGTCCCAGACATGGTCTTACATGAAATC
50429085 ATATCTCGAT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
42 23 0.35
43 21 0.32
44 22 0.33
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACATGAAATCTCAATA
Found at i:50430241 original size:61 final size:63
Alignment explanation
Indices: 50430102--50430241 Score: 164
Period size: 60 Copynumber: 2.3 Consensus size: 63
50430092 AACTTTACTG
* * *
50430102 GGCCTAAGCCCTATT-CAGAAATCAGAGTTAACTAGGCCTTAGCCCATATCAATATTAATCTG
1 GGCCTTAGCCCTATTACAGAAATCAGAGTTAACTAGGCCTTAGCCCATATCAATATCAATCTA
* * * * *
50430164 GGCCATAGCCC-CTTACAG-TATCAGAG-TATACTAGGCC-TAGCCCATGTCAGTATCAATCTA
1 GGCCTTAGCCCTATTACAGAAATCAGAGTTA-ACTAGGCCTTAGCCCATATCAATATCAATCTA
50430224 GGCCTTAGCCCTATTACA
1 GGCCTTAGCCCTATTACA
50430242 AGTCGAGATA
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
60 31 0.48
61 22 0.34
62 12 0.18
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (63 bp):
GGCCTTAGCCCTATTACAGAAATCAGAGTTAACTAGGCCTTAGCCCATATCAATATCAATCTA
Found at i:50430288 original size:20 final size:20
Alignment explanation
Indices: 50430263--50430302 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50430253 ATTGGGCCTT
50430263 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
50430283 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
50430303 CCGATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:50434240 original size:61 final size:63
Alignment explanation
Indices: 50434165--50434318 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 63
50434155 CTATTCAGAA
* * * *
50434165 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATTTAGGCCATAGCCC-CTTAC-AGT
1 ATCAGAGTAT-ACTGGGCCTTAGCCCATATCAACATCAATATAGGCCATAGCCCTATTACAAGT
* * *
50434226 ATCAGAGTATACTGGGCC-TAGCCCATGTCAGCATCAATATAGGCCGTAGCCCTATTACAAGT
1 ATCAGAGTATACTGGGCCTTAGCCCATATCAACATCAATATAGGCCATAGCCCTATTACAAGT
* * *
50434288 -TGAGA-TATATTGGGCCTT-GCCCATATTAACA
1 ATCAGAGTATACTGGGCCTTAGCCCATATCAACA
50434319 AGTTGGGCCC
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
60 48 0.62
61 25 0.32
62 4 0.05
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (63 bp):
ATCAGAGTATACTGGGCCTTAGCCCATATCAACATCAATATAGGCCATAGCCCTATTACAAGT
Found at i:50443164 original size:40 final size:40
Alignment explanation
Indices: 50443075--50443297 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
50443065 GCTCCTCGTT
*
50443075 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50443114 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50443154 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
50443194 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
50443232 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50443273 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50443298 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 25 0.15
39 50 0.30
40 78 0.48
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50443178 original size:79 final size:79
Alignment explanation
Indices: 50443075--50443297 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
50443065 GCTCCTCGTT
* *
50443075 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
50443140 TTTAGTAACTCGCA
66 ATTAGTAACTCGCA
*
50443154 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAC-AATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAA-TCGCACAAATGCCTTCGGGACTTAGCCCG
*
50443216 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
* * * * *
50443232 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-A-ATCGCACAAATGCCTTCGGGACTTAGCCC
50443295 GGA
63 GGA
50443298 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
77 4 0.03
78 44 0.35
79 56 0.45
80 21 0.17
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:50443257 original size:118 final size:118
Alignment explanation
Indices: 50443077--50443297 Score: 288
Period size: 118 Copynumber: 1.9 Consensus size: 118
50443067 TCCTCGTTCA
* *
50443077 AATGCCTTCGGGACATAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGATA
*
50443142 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 TAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
50443195 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTA-ATCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
50443257 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
50443298 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
116 1 0.01
117 17 0.19
118 63 0.71
119 8 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGATA
TAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:50453713 original size:28 final size:27
Alignment explanation
Indices: 50453663--50453715 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
50453653 CTATTCAGAA
* *
50453663 ATCAGTGTTAACTGGGCCTTAGCCCAT
1 ATCAGTATTAACTGGGCCATAGCCCAT
50453690 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTGGGCCATAGCCC
50453716 TATTACAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTGGGCCATAGCCCAT
Found at i:50460111 original size:40 final size:40
Alignment explanation
Indices: 50460051--50460218 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
50460041 CCTTTGGGGT
* *
50460051 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGAGCC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGAGAC
* * *
50460090 TTAGCCCGGTTATAGTAACTCGCACAATTTCCTTC-AGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGA-GAC
* *
50460130 TTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
* * *
50460170 TTAGCCTGGAAATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
50460210 TTAGCCCGG
1 TTAGCCCGG
50460219 TTATCATCCG
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 6 0.05
40 107 0.95
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGAC
Found at i:50468297 original size:38 final size:39
Alignment explanation
Indices: 50468197--50468405 Score: 309
Period size: 39 Copynumber: 5.4 Consensus size: 39
50468187 CAACCAAGTA
* * * *
50468197 CCTTCGGG-TTTAGCCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGAAATAG-TAACTCGCACAAATG
** *
50468235 CCTTCGGGACTTAGCCCGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
50468274 CCTTC-GGACTTAGCCCGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
50468312 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GAAATAGTAACTCGCACAAATG
50468352 CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
50468391 CCTTC-GGACTTAGCC
1 CCTTCGGGACTTAGCC
50468406 GGTTATCATC
Statistics
Matches: 159, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
38 54 0.34
39 66 0.42
40 39 0.25
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGAAATAGTAACTCGCACAAATG
Found at i:50470507 original size:14 final size:14
Alignment explanation
Indices: 50470477--50470514 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
50470467 CATAAGTTAT
50470477 TTGTTATTT-TTTA
1 TTGTTATTTATTTA
50470490 -TGTTATTTATTTA
1 TTGTTATTTATTTA
*
50470503 TTGTTATATATT
1 TTGTTATTTATT
50470515 CGCATGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 8 0.36
13 4 0.18
14 10 0.45
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (14 bp):
TTGTTATTTATTTA
Found at i:50480332 original size:44 final size:44
Alignment explanation
Indices: 50480284--50480936 Score: 756
Period size: 44 Copynumber: 14.8 Consensus size: 44
50480274 CCGATAGCCA
* * * * *
50480284 ATTTGGCGTCACCGTATTATCAGAGAGTAGATCGAAGATAATAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* *
50480328 ATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATATCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* * **
50480372 ATTTGGTGTCTCTGTATTGAT-AGAGAGCACATCGAAGATATTAG
1 ATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATAACAG
* * *
50480416 A-TTGGATGTCTCTGTATTGAT-AGAGAGCAGATCAAAGATGACAG
1 ATTTGG-CGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATAACAG
* * *
50480460 ATTTGGCGTCTTTGTATTGTCAGAGAGCAGATCGAAGATAGCTG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
*
50480504 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTGAAGATAACAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* * * * * * * *
50480548 ATTTGGTGTCTCTATTTTTTTAGAGAGTAGATCGAAAGATAGCTG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCG-AAGATAACAG
* * ***
50480593 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAAAGAGGTG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* * * * * *
50480637 ATTTGGCCTCTCTGTATTGTCAGAGAGCAGACCAAAAATAGCAA
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* *
50480681 ATTTAGTGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* *
50480725 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATTGAAGATATCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
*
50480769 ATTTGGCGTCTCTGTATTGAT-AGAGAGCAGATCGAAGATGACAG
1 ATTTGGCGTCTCTGTATTG-TCAGAGAGCAGATCGAAGATAACAG
* * * *
50480813 ATTTGGGGTCTCTGTATTGTTAGAGAGCAGATCGAAAATAGCAG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* * * * *
50480857 ATTTGGTGTCTCTGTATTGTCAGAGAGTAGATCGAAAATAGCGG
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
* *
50480901 ATTTGGCGTCTCCGTATTGTCAGAGAGCAAATCGAA
1 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
50480937 CATTTCGGTT
Statistics
Matches: 524, Mismatches: 78, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
43 6 0.01
44 476 0.91
45 42 0.08
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAG
Found at i:50483186 original size:14 final size:14
Alignment explanation
Indices: 50483154--50483191 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
50483144 CATAAGCTAT
50483154 TTGTTATTT-TTTA
1 TTGTTATTTATTTA
50483167 -TGTTATTTATTTA
1 TTGTTATTTATTTA
*
50483180 TTGTTATATATT
1 TTGTTATTTATT
50483192 CGCATGCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 8 0.36
13 4 0.18
14 10 0.45
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (14 bp):
TTGTTATTTATTTA
Found at i:50484673 original size:43 final size:43
Alignment explanation
Indices: 50484617--50484700 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
50484607 ATACCGTACA
* * *
50484617 ATGCCAATGTCCCAGATATGATCTTACATGTAATCACATATTG
1 ATGCCAATATCCCAGACATGATCTTACACGTAATCACATATTG
* * *
50484660 ATGCCACTATCCCAGACATGGTCTTACACGTAATCCCATAT
1 ATGCCAATATCCCAGACATGATCTTACACGTAATCACATAT
50484701 CGATCATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGATCTTACACGTAATCACATATTG
Found at i:50484824 original size:43 final size:43
Alignment explanation
Indices: 50484775--50484948 Score: 294
Period size: 43 Copynumber: 4.0 Consensus size: 43
50484765 ATACCGTACA
*
50484775 ATGCCAACGTCCCAGACATGGTCTTACACATAATTACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATTACATATCG
* *
50484818 ATGCCAACATCCCAGACGTGGTCTTACACATAATTACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATTACATATCG
* *
50484861 ATGCCAATGTCCCAGACGTGGTTTTACACATAATTACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATTACATATCG
*
50484904 ATGCCAACGTCCCAAACGTGGTCTTACACATAATTACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATAATTACATATCG
50484947 AT
1 AT
50484949 ATCACATATA
Statistics
Matches: 121, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 121 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATAATTACATATCG
Found at i:50484830 original size:158 final size:158
Alignment explanation
Indices: 50484542--50484851 Score: 514
Period size: 158 Copynumber: 2.0 Consensus size: 158
50484532 GATTACACAT
50484542 TCGATCATAACTTATCATTGCCCGTTGAACCACTCAAAATTAATAGGATACTCTAATAATCACAC
1 TCGATCATAACTTATCATTGCCCGTTGAACCACTCAAAATTAATAGGATACTCTAATAATCACAC
* * ** *
50484607 ATACCGTACAATGCCAATGTCCCAGATATGATCTTACATGTAATCACATATTGATGCCACTATCC
66 ATACCGTACAATGCCAACGTCCCAGACATGATCTTACACATAATCACATATCGATGCCACTATCC
*
50484672 CAGACATGGTCTTACACGTAATCCCATA
131 CAGACATGGTCTTACACATAATCCCATA
*
50484700 TCGATCATAACTTATCATTGCCCGTTGAACCACTCGAAATTAATAGGATACTCTAATAATCACAC
1 TCGATCATAACTTATCATTGCCCGTTGAACCACTCAAAATTAATAGGATACTCTAATAATCACAC
* *
50484765 ATACCGTACAATGCCAACGTCCCAGACATGGTCTTACACATAATTACATATCGATGCCAAC-ATC
66 ATACCGTACAATGCCAACGTCCCAGACATGATCTTACACATAATCACATATCGATGCC-ACTATC
*
50484829 CCAGACGTGGTCTTACACATAAT
130 CCAGACATGGTCTTACACATAAT
50484852 TACATATTGA
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
158 139 0.99
159 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (158 bp):
TCGATCATAACTTATCATTGCCCGTTGAACCACTCAAAATTAATAGGATACTCTAATAATCACAC
ATACCGTACAATGCCAACGTCCCAGACATGATCTTACACATAATCACATATCGATGCCACTATCC
CAGACATGGTCTTACACATAATCCCATA
Found at i:50488283 original size:19 final size:19
Alignment explanation
Indices: 50488259--50488296 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
50488249 TTCGGAACAA
50488259 GTGTAGATATAAGGGAAAC
1 GTGTAGATATAAGGGAAAC
50488278 GTGTAGATATAAGGGAAAC
1 GTGTAGATATAAGGGAAAC
50488297 ATGTGGATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.32, T:0.21
Consensus pattern (19 bp):
GTGTAGATATAAGGGAAAC
Found at i:50497383 original size:27 final size:26
Alignment explanation
Indices: 50497335--50497394 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
50497325 GCGAGGCTAC
* *
50497335 CAGATATTGTGACAAAGTCACCAGATG
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
50497362 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
50497388 CAGATAT
1 CAGATAT
50497395 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:50498222 original size:27 final size:27
Alignment explanation
Indices: 50498179--50498256 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
50498169 TCTACCTTAC
* *
50498179 AAGGGTATTTCT-ATAATTTCACAAA-T
1 AAGGGTATTT-TGGTAATTTTACAAACT
*
50498205 CAGAGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAACT
50498233 AAGGGTATTTTGGTAATTTTACAA
1 AAGGGTATTTTGGTAATTTTACAA
50498257 CTTATCCACT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
26 3 0.07
27 39 0.87
28 3 0.07
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:50498608 original size:41 final size:41
Alignment explanation
Indices: 50498563--50498645 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
50498553 AGTTTAAAAC
50498563 CAACACCAACTCTTGCCATCCCAACATAGCAAAATAATCAA
1 CAACACCAACTCTTGCCATCCCAACATAGCAAAATAATCAA
50498604 CAACACCAACTCTTGCCATCCCAACATAGCAAAATAATCAA
1 CAACACCAACTCTTGCCATCCCAACATAGCAAAATAATCAA
50498645 C
1 C
50498646 CTTTGCATGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.43, C:0.35, G:0.05, T:0.17
Consensus pattern (41 bp):
CAACACCAACTCTTGCCATCCCAACATAGCAAAATAATCAA
Found at i:50504573 original size:27 final size:27
Alignment explanation
Indices: 50504543--50504604 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
50504533 TAGGGGCAAA
* * *
50504543 TCAGTAGTCCTACCCTATAGGGGTATT
1 TCAGTAATCCTACCCTACAAGGGTATT
* *
50504570 TCAGTAATTCTACCTTACAAGGGTATT
1 TCAGTAATCCTACCCTACAAGGGTATT
*
50504597 TCTGTAAT
1 TCAGTAAT
50504605 TTCACAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
TCAGTAATCCTACCCTACAAGGGTATT
Found at i:50504620 original size:27 final size:27
Alignment explanation
Indices: 50504590--50504686 Score: 142
Period size: 27 Copynumber: 3.6 Consensus size: 27
50504580 TACCTTACAA
* *
50504590 GGGTATTTCT-GTAATTTCACAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
50504617 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
50504644 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
50504671 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
50504687 CAACAACTTA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
26 1 0.02
27 64 0.98
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:50507073 original size:28 final size:28
Alignment explanation
Indices: 50507033--50507116 Score: 150
Period size: 28 Copynumber: 3.0 Consensus size: 28
50507023 GGAGGAAGCA
50507033 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
50507061 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
50507089 TTCTGGTAGCTCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
50507117 ATCTAGTGAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:50507136 original size:56 final size:54
Alignment explanation
Indices: 50507033--50507152 Score: 141
Period size: 56 Copynumber: 2.2 Consensus size: 54
50507023 GGAGGAAGCA
* * * * *
50507033 TTCTGGTGGCTCTGCCACAAATATCTGTTTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTAGCTCTGCCACAAATATCTGTATCTAGTGACTCTACCAC-AATATCT-T
* * *
50507089 TTCTGGTAGCTCTGCCACAATTATCTGTATCTAGTGACTTTATCACAATATCTT
1 TTCTGGTAGCTCTGCCACAAATATCTGTATCTAGTGACTCTACCACAATATCTT
*
50507143 TTTTGGTAGC
1 TTCTGGTAGC
50507153 CATGCTGCAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 10 0.18
55 7 0.13
56 38 0.69
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (54 bp):
TTCTGGTAGCTCTGCCACAAATATCTGTATCTAGTGACTCTACCACAATATCTT
Found at i:50516389 original size:30 final size:30
Alignment explanation
Indices: 50516355--50516418 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
50516345 TATGAGCATG
50516355 TGTGTAGTAAACATCTGATTTAATGAAAAA
1 TGTGTAGTAAACATCTGATTTAATGAAAAA
*
50516385 TGTGTAGTAAACATCTGATTTAATGAAAAC
1 TGTGTAGTAAACATCTGATTTAATGAAAAA
50516415 TGTG
1 TGTG
50516419 GGCTGATATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (30 bp):
TGTGTAGTAAACATCTGATTTAATGAAAAA
Found at i:50519185 original size:21 final size:21
Alignment explanation
Indices: 50519159--50519200 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
50519149 TTAGGAAAGA
50519159 GAGAGCAAATATTCTT-TGAAT
1 GAGAGCAAATATT-TTCTGAAT
50519180 GAGAGCAAATATTTTCTGAAT
1 GAGAGCAAATATTTTCTGAAT
50519201 TTCTTGTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (21 bp):
GAGAGCAAATATTTTCTGAAT
Found at i:50521783 original size:18 final size:18
Alignment explanation
Indices: 50521760--50521796 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
50521750 TATCTTCATA
*
50521760 TAAGATAGTTGGTATCTT
1 TAAGATAGTTGGCATCTT
50521778 TAAGATAGTTGGCATCTT
1 TAAGATAGTTGGCATCTT
50521796 T
1 T
50521797 TCTTCTATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (18 bp):
TAAGATAGTTGGCATCTT
Found at i:50539245 original size:42 final size:42
Alignment explanation
Indices: 50539082--50539247 Score: 140
Period size: 42 Copynumber: 3.9 Consensus size: 42
50539072 AATCATACCA
* * * * *
50539082 ATGCCATATCCCAGATATGATCTTACATAGGATCTTAT-ATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAACTCATAATCG
* * ** * *
50539124 ATGCCAATAGCCCAGCTATGGTCTTACACGATTCCCAT-ATCA
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAACTCATAATCG
* * * *
50539166 ATGCCATGTCCCAAACATGGTCCTACACGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAA-CTCATAATCG
50539208 ATGCCATATCCCAGATATGGTCTTACACGTAAACTCATAA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAACTCATAA
50539248 CCCTAATGTC
Statistics
Matches: 97, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
41 19 0.20
42 54 0.56
43 24 0.25
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAACTCATAATCG
Found at i:50541853 original size:28 final size:28
Alignment explanation
Indices: 50541813--50541867 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
50541803 TGTTGAGTAC
*
50541813 TCAATGTCTCGCACACTAAGTGCCATAA
1 TCAATATCTCGCACACTAAGTGCCATAA
50541841 TCAATATCTCGCACACTAAGTGCCATA
1 TCAATATCTCGCACACTAAGTGCCATA
50541868 CATAGCCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (28 bp):
TCAATATCTCGCACACTAAGTGCCATAA
Found at i:50541905 original size:40 final size:40
Alignment explanation
Indices: 50541852--50541985 Score: 196
Period size: 40 Copynumber: 3.4 Consensus size: 40
50541842 CAATATCTCG
* *
50541852 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATATCGAATCA
* * * *
50541892 CACACTAAATGCCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATATCGAATCA
* *
50541932 CACACTAAGTACCATACATAGCCGAAGCTATATCGTATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATATCGAATCA
50541972 CACACTAAGTGCCA
1 CACACTAAGTGCCA
50541986 CAAATAACTG
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATATCGAATCA
Found at i:50547594 original size:16 final size:16
Alignment explanation
Indices: 50547573--50547623 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
50547563 TTTCTAGTAT
*
50547573 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
50547589 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
50547605 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
50547621 TTT
1 TTT
50547624 TCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:50550272 original size:16 final size:16
Alignment explanation
Indices: 50550253--50550303 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 16
50550243 ATAAATATAT
50550253 ATAATAATATATAAAA
1 ATAATAATATATAAAA
*
50550269 ATAATATTAATATATAAAT
1 AT-A-A-TAATATATAAAA
*
50550288 ATAAAAATATATAAAA
1 ATAATAATATATAAAA
50550304 TATTTAGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 12 0.41
17 2 0.07
18 2 0.07
19 13 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAATAATATATAAAA
Found at i:50550355 original size:22 final size:22
Alignment explanation
Indices: 50550219--50550366 Score: 76
Period size: 23 Copynumber: 6.7 Consensus size: 22
50550209 TTTGTATTGT
*
50550219 ATATAATGTATACAA-AAAATAG
1 ATATAATATATA-AATAAAATAG
* *
50550241 AAATAAATATATATAATAATATATAA
1 ATAT-AATATATA-AATAA-A-ATAG
* * *
50550267 AAATAATAT-T-AAT-ATATAA
1 ATATAATATATAAATAAAATAG
* * *
50550286 ATATAA-AAATATATAAAATAT
1 ATATAATATATAAATAAAATAG
* *
50550307 TTAGAATATATATAATAAAATAG
1 ATATAATATATA-AATAAAATAG
*
50550330 ATATAATATATAAAT-AAATTG
1 ATATAATATATAAATAAAATAG
50550351 AATATAATAT-TAAATA
1 -ATATAATATATAAATA
50550367 GATAAATAAA
Statistics
Matches: 97, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
18 1 0.01
19 10 0.10
20 2 0.02
21 19 0.20
22 22 0.23
23 27 0.28
24 3 0.03
25 6 0.06
26 7 0.07
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (22 bp):
ATATAATATATAAATAAAATAG
Found at i:50551452 original size:16 final size:17
Alignment explanation
Indices: 50551412--50551461 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 17
50551402 TAGAATATTA
50551412 ATTCTATTATATATTTATCT
1 ATTCTATTATATA--TA-CT
50551432 ATTCTATTATATATA-T
1 ATTCTATTATATATACT
*
50551448 ATTCTAATATATAT
1 ATTCTATTATATAT
50551462 TAGTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
18 2 0.07
20 13 0.45
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTCTATTATATATACT
Found at i:50553034 original size:79 final size:80
Alignment explanation
Indices: 50552866--50553050 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
50552856 GCTACTCATT
* * *
50552866 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGAGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
50552930 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
50552947 CAATGCCTTCGAG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
50553010 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
50553026 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGAGACTTAGCCCGGA
50553051 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:50553050 original size:40 final size:40
Alignment explanation
Indices: 50552866--50553050 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
50552856 GCTACTCATT
* *
50552866 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
50552906 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
50552946 CCAATGCCTTCGAG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
50552985 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
50553026 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50553051 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 79 0.64
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:50556509 original size:18 final size:18
Alignment explanation
Indices: 50556488--50556524 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50556478 AATTCGACGC
* *
50556488 AGTGGATAAATTAGATAA
1 AGTGGAAAAATGAGATAA
50556506 AGTGGAAAAATGAGATAA
1 AGTGGAAAAATGAGATAA
50556524 A
1 A
50556525 CCAGCTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22
Consensus pattern (18 bp):
AGTGGAAAAATGAGATAA
Found at i:50559337 original size:63 final size:63
Alignment explanation
Indices: 50559238--50559364 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
50559228 GTAAGAATAA
50559238 AGTAAGATAATAAAGAAAGTGGATTATCTTATCATATACATCTATTTTATTTGATTTAAAAAG
1 AGTAAGATAATAAAGAAAGTGGATTATCTTATCATATACATCTATTTTATTTGATTTAAAAAG
50559301 AGTAAGATAATAAAGAAAGTGGATTATCTTATCATATACATCTATTTTATTTGATTTAAAAAG
1 AGTAAGATAATAAAGAAAGTGGATTATCTTATCATATACATCTATTTTATTTGATTTAAAAAG
50559364 A
1 A
50559365 TGGGCAAGTC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (63 bp):
AGTAAGATAATAAAGAAAGTGGATTATCTTATCATATACATCTATTTTATTTGATTTAAAAAG
Found at i:50559457 original size:17 final size:17
Alignment explanation
Indices: 50559435--50559468 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50559425 ATAGATTCAC
*
50559435 TTAGATATACTTAGTAT
1 TTAGATATAATTAGTAT
50559452 TTAGATATAATTAGTAT
1 TTAGATATAATTAGTAT
50559469 AATATACGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGATATAATTAGTAT
Found at i:50562914 original size:28 final size:28
Alignment explanation
Indices: 50562857--50562915 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
50562847 TGTCGTTGAG
* * * *
50562857 TACTCACTATCTCGCACATTAAGTGGCA
1 TACTCAATATCCCGCACACTAAGTGCCA
*
50562885 TACTCAATATCCCGCACACTATGTGCCA
1 TACTCAATATCCCGCACACTAAGTGCCA
50562913 TAC
1 TAC
50562916 ATAACCGAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (28 bp):
TACTCAATATCCCGCACACTAAGTGCCA
Found at i:50562943 original size:40 final size:40
Alignment explanation
Indices: 50562899--50563043 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
50562889 CAATATCCCG
* * *
50562899 CACACTATGTGCCATACATAACCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
* * *
50562939 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
1 CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
* * *
50562979 CACACTAAGTGCCATATATAGCCGAAGCTATATCATATCG
1 CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
*
50563019 CACACTAAGTGCCATAAATAACCGA
1 CACACTAAGTGCCATATATAACCGA
50563044 TTTTTCGTCG
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
Found at i:50567561 original size:40 final size:40
Alignment explanation
Indices: 50567463--50567725 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
50567453 TCCTCGTTCA
* * * * *
50567463 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
50567502 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
50567542 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
50567582 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
50567622 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
50567662 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
50567702 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50567726 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:50571387 original size:24 final size:24
Alignment explanation
Indices: 50571355--50571403 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50571345 TTGCTTGGGT
50571355 CAACTCGAATACCCGATGCGGATA
1 CAACTCGAATACCCGATGCGGATA
50571379 CAACTCGAATACCCGATGCGGATA
1 CAACTCGAATACCCGATGCGGATA
50571403 C
1 C
50571404 CACATGACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.16
Consensus pattern (24 bp):
CAACTCGAATACCCGATGCGGATA
Found at i:50575462 original size:40 final size:40
Alignment explanation
Indices: 50575414--50575641 Score: 359
Period size: 40 Copynumber: 5.7 Consensus size: 40
50575404 GCTACTCACT
* *
50575414 CAAATGCCTTCGTGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
50575454 CAATTGCCTTCGGGACTTAGCCCGGTTATAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
50575494 CAATTGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
50575534 CAAATGCCTTCGGGACTTGGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
50575574 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
50575614 CAAATACCTTCGGG-CTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
50575642 CAATCCGAAT
Statistics
Matches: 175, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 13 0.07
40 162 0.93
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:50584798 original size:48 final size:48
Alignment explanation
Indices: 50584739--50585066 Score: 390
Period size: 48 Copynumber: 6.8 Consensus size: 48
50584729 TTAGGTTCCT
* * * * * * * *
50584739 GTGTAAGACCATGTCTAGAACATAGCATCGGCGATAATATGTATGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCA
* * *
50584787 GTGTAAGACCATGTCTGGGACATGGCAACGGTGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCA
*
50584835 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATGTATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCA
* * * *
50584883 ATGTAAGACCATGACTGGGACATGGCAT-A-TGCAATGATGTATGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTG--ATGATATATGTGCCA
* *** *
50584931 ATGTAAGACCATGTCTGGGACATGGCATCAACAATGATGTATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCA
* *
50584979 GTGTAAGACCATGTTTGGCACATGGCATCAGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCA
* * *
50585027 GTGTAAGACCATGTCTAGGACATGGAATCGGTGATGATAT
1 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATAT
50585067 GTGGATTCAT
Statistics
Matches: 246, Mismatches: 30, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
46 2 0.01
47 1 0.00
48 242 0.98
49 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATATATGTGCCA
Found at i:50590552 original size:43 final size:42
Alignment explanation
Indices: 50590505--50590671 Score: 183
Period size: 43 Copynumber: 3.9 Consensus size: 42
50590495 GTTATCGAGA
*
50590505 TGTGATTACATGTAAGACCATGTCTGGGACATCGGTATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAT-GGCATTGTAT
* * *
50590548 TGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTAT
* * * **
50590591 TATGATTTCATGTAAGACCCTGTCTGGGACAGTGGCGCTG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTAT
* * *
50590633 ATGTGATAACATGTAAGACCATATCTGGGATATGGCATT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATGGCATT
50590672 ATTCACTCTT
Statistics
Matches: 101, Mismatches: 21, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
42 7 0.07
43 93 0.92
44 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGTAT
Found at i:50598245 original size:42 final size:43
Alignment explanation
Indices: 50598198--50598300 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
50598188 TAATCGAGAA
50598198 GTGATTACATGTAAGACCATCT-TGGGACATTGGCATTGTATT
1 GTGATTACATGTAAGACCATCTCTGGGACATTGGCATTGTATT
* *
50598240 GTGATTACATGTAAGACCATGTCTGGGGCATTGGCATTGTATT
1 GTGATTACATGTAAGACCATCTCTGGGACATTGGCATTGTATT
* * *
50598283 ATGATTTCGTGTAAGACC
1 GTGATTACATGTAAGACC
50598301 CTGTGTAACA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 21 0.38
43 34 0.62
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
GTGATTACATGTAAGACCATCTCTGGGACATTGGCATTGTATT
Found at i:50599891 original size:18 final size:18
Alignment explanation
Indices: 50599868--50599938 Score: 81
Period size: 18 Copynumber: 3.9 Consensus size: 18
50599858 CTTGGCCCAT
* *
50599868 TGCAGTAATAGTAAATAA
1 TGCAGTAACAGTAAACAA
*
50599886 TGCAGTAACAGTAAACAG
1 TGCAGTAACAGTAAACAA
50599904 TGCAGTAACCA-TAAACAA
1 TGCAGTAA-CAGTAAACAA
* *
50599922 TGCAGTACCAATAAACA
1 TGCAGTAACAGTAAACA
50599939 GTATGCAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
17 2 0.04
18 42 0.91
19 2 0.04
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAAACAA
Found at i:50600382 original size:26 final size:27
Alignment explanation
Indices: 50600279--50600393 Score: 169
Period size: 27 Copynumber: 4.3 Consensus size: 27
50600269 CATCTTACCA
* *
50600279 TCATTTTACCCCATAAGGGCAAAACAA
1 TCATTTTACCCCATAAGGGCAAAATAG
50600306 TCATTTTACCCCATAAGGGCAAAATAG
1 TCATTTTACCCCATAAGGGCAAAATAG
* *
50600333 TCATTTTATCACATAAGGGCAAAATAG
1 TCATTTTACCCCATAAGGGCAAAATAG
*
50600360 TCATTTTA-CCCATAAGGGAAAAATAG
1 TCATTTTACCCCATAAGGGCAAAATAG
*
50600386 TTATTTTA
1 TCATTTTA
50600394 TCGATTAATG
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
26 23 0.28
27 58 0.72
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (27 bp):
TCATTTTACCCCATAAGGGCAAAATAG
Found at i:50605064 original size:46 final size:43
Alignment explanation
Indices: 50604983--50605103 Score: 143
Period size: 46 Copynumber: 2.7 Consensus size: 43
50604973 CGAGTGCTAG
*
50604983 TGTAAAACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-CTCGAGACGT--GCCAA
* ** *
50605029 TGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCT-CGAGACGTGCCAA
50605073 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
50605104 ACAGATATGC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
44 9 0.13
45 16 0.24
46 42 0.63
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (43 bp):
TGTAAGACATGTCTGGGACATGCATCGGCTCGAGACGTGCCAA
Found at i:50612694 original size:46 final size:46
Alignment explanation
Indices: 50612548--50612769 Score: 193
Period size: 46 Copynumber: 4.8 Consensus size: 46
50612538 TCACTTGTGT
* ** *
50612548 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGA
* * **
50612594 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGACGA
* * **
50612642 GTGCTAGTGTAAGACATGTTTGGGACATGCATCAACCTCAAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACG-A
* * * *
50612689 -AGCTAGTGTAAGACATATCTGGAACATGCATTGG-CT-ACGA-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGA
*
50612731 TGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 -GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
50612770 ATAGATATGC
Statistics
Matches: 139, Mismatches: 28, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 13 0.09
45 14 0.10
46 58 0.42
47 28 0.20
48 23 0.17
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGA
Found at i:50614012 original size:20 final size:21
Alignment explanation
Indices: 50613974--50614012 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50613964 TTGAAATGGG
50613974 CACACAGGCGTGTTGCCCTTC
1 CACACAGGCGTGTTGCCCTTC
*
50613995 CACACTGGCGTG-TGCCCT
1 CACACAGGCGTGTTGCCCT
50614013 GTTTCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.26, T:0.23
Consensus pattern (21 bp):
CACACAGGCGTGTTGCCCTTC
Done.