Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 157 of 290
Found at i:50620992 original size:48 final size:48
Alignment explanation
Indices: 50620934--50621036 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 48
50620924 TCTCTAATCG
* * *
50620934 TTGACTGTTACTGAATAATAAAGATTAATTGATCGCTACTAAAAAATA
1 TTGATTGTTACTGAATAATAAAGATAAATTGATCGATACTAAAAAATA
* ** * * *
50620982 TTGATTGTTACTGAATGATATTGATAAATTGATTGATATTGAAAAATA
1 TTGATTGTTACTGAATAATAAAGATAAATTGATCGATACTAAAAAATA
50621030 TTGATTG
1 TTGATTG
50621037 ATATTGAGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.39
Consensus pattern (48 bp):
TTGATTGTTACTGAATAATAAAGATAAATTGATCGATACTAAAAAATA
Found at i:50621013 original size:28 final size:28
Alignment explanation
Indices: 50620981--50621034 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
50620971 ACTAAAAAAT
* **
50620981 ATTGATTGTTACTGAATGATATTGATAA
1 ATTGATTGATACTGAAAAATATTGATAA
*
50621009 ATTGATTGATATTGAAAAATATTGAT
1 ATTGATTGATACTGAAAAATATTGAT
50621035 TGATATTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.43
Consensus pattern (28 bp):
ATTGATTGATACTGAAAAATATTGATAA
Found at i:50621034 original size:20 final size:19
Alignment explanation
Indices: 50620997--50621043 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
50620987 TGTTACTGAA
*
50620997 TGATATTG-ATAAATTGAT
1 TGATATTGAAAAAATTGAT
50621015 TGATATTGAAAAATATTGAT
1 TGATATTGAAAAA-ATTGAT
50621035 TGATATTGA
1 TGATATTGA
50621044 GCTTGGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.31
19 3 0.12
20 15 0.58
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (19 bp):
TGATATTGAAAAAATTGAT
Found at i:50621040 original size:10 final size:10
Alignment explanation
Indices: 50620979--50621043 Score: 53
Period size: 10 Copynumber: 6.7 Consensus size: 10
50620969 CTACTAAAAA
50620979 ATATTGATTG
1 ATATTGATTG
* * *
50620989 TTACTGAATG
1 ATATTGATTG
50620999 ATATTGA-T-
1 ATATTGATTG
*
50621007 AAATTGATTG
1 ATATTGATTG
***
50621017 ATATTGAAAA
1 ATATTGATTG
50621027 ATATTGATTG
1 ATATTGATTG
50621037 ATATTGA
1 ATATTGA
50621044 GCTTGGAATA
Statistics
Matches: 40, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
8 6 0.15
9 2 0.05
10 32 0.80
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (10 bp):
ATATTGATTG
Found at i:50622728 original size:18 final size:19
Alignment explanation
Indices: 50622707--50622742 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
50622697 AGAAGAATAC
*
50622707 AAAGATTAAGAAA-GAAAG
1 AAAGATAAAGAAATGAAAG
50622725 AAAGATAAAGAAATGAAA
1 AAAGATAAAGAAATGAAA
50622743 AGAAGATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.11
Consensus pattern (19 bp):
AAAGATAAAGAAATGAAAG
Found at i:50623840 original size:22 final size:23
Alignment explanation
Indices: 50623794--50623845 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
50623784 TTTTTTTCAC
50623794 TATT-TTGCTACATTTTTACTAT
1 TATTGTTGCTACATTTTTACTAT
* *
50623816 TA-TGTTGCTAC-TATTTTATTGT
1 TATTGTTGCTACAT-TTTTACTAT
50623838 TATTGTTG
1 TATTGTTG
50623846 GATATTGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 2 0.08
22 18 0.72
23 5 0.20
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.60
Consensus pattern (23 bp):
TATTGTTGCTACATTTTTACTAT
Found at i:50624528 original size:8 final size:8
Alignment explanation
Indices: 50624506--50624539 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
50624496 ATTCATGTTA
50624506 TTTATTTT
1 TTTATTTT
* *
50624514 ATAATTTT
1 TTTATTTT
50624522 TTTATTTT
1 TTTATTTT
50624530 TTTATTTT
1 TTTATTTT
50624538 TT
1 TT
50624540 ATCATGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTATTTT
Found at i:50625957 original size:15 final size:15
Alignment explanation
Indices: 50625937--50625965 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50625927 TGAAGCTCCA
50625937 TCGACGCCTTCGCCT
1 TCGACGCCTTCGCCT
50625952 TCGACGCCTTCGCC
1 TCGACGCCTTCGCC
50625966 CTCTAAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.48, G:0.21, T:0.24
Consensus pattern (15 bp):
TCGACGCCTTCGCCT
Found at i:50628591 original size:79 final size:79
Alignment explanation
Indices: 50628447--50628668 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 79
50628437 GAATCACATA
* * *
50628447 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGAACTTAACCGGATATAGCTACTCGCTCAAATGCCTTCAGGACATAGCCCGGATATAGT
50628512 AACTCGCACAAATG
66 AACTCGCACAAATG
* * * *
50628526 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCTCCAATGCCTTCAGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAA-CCGGATATAGCT-ACTCGCTCAAATGCCTTCAGGACATAGCCCGGATA-T
*
50628588 AGTAAGTCGCACAAATG
63 AGTAACTCGCACAAATG
* * * * * *
50628605 CCTTC-GAATCTTAGTCCGGATATAG-TCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGAA-CTTA-ACCGGATATAGCT-AC-TCGCTCAAATGCCTTCAGGACATAGCCCGGATA
50628668 T
62 T
50628669 CATTCGAATA
Statistics
Matches: 118, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
78 3 0.03
79 60 0.51
80 42 0.36
81 12 0.10
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGCTCAAATGCCTTCAGGACATAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:50628605 original size:39 final size:40
Alignment explanation
Indices: 50628473--50628666 Score: 214
Period size: 40 Copynumber: 4.8 Consensus size: 40
50628463 GGATATAGCT
* *
50628473 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
50628513 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
50628553 ACTCGCTCCAATGCCTTCAGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * * *
50628592 AGTCGCACAAATGCCTTC-GAATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
50628632 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
50628667 ATCATTCGAA
Statistics
Matches: 128, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.24
40 67 0.52
41 27 0.21
42 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:50631943 original size:12 final size:12
Alignment explanation
Indices: 50631928--50631967 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
50631918 TATTAAGAAT
50631928 TTTATTAAATTA
1 TTTATTAAATTA
50631940 TTTATT--ATT-
1 TTTATTAAATTA
50631949 TTTATTAAATTA
1 TTTATTAAATTA
50631961 TTT-TTAA
1 TTTATTAA
50631968 TAATAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
9 6 0.24
10 3 0.12
11 7 0.28
12 9 0.36
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTATTAAATTA
Found at i:50631974 original size:17 final size:14
Alignment explanation
Indices: 50631943--50631984 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
50631933 TAAATTATTT
50631943 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
50631957 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
* *
50631970 ATAAATTTTATTAA
1 ATTATTTTTATTAA
50631984 A
1 A
50631985 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:50632177 original size:16 final size:16
Alignment explanation
Indices: 50632158--50632199 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
50632148 ATTACAGTTG
*
50632158 TATTTTATTACAACTC
1 TATTCTATTACAACTC
50632174 TATTCTATTACAACTC
1 TATTCTATTACAACTC
*
50632190 TATTCCATTA
1 TATTCTATTA
50632200 TAACGAACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTCTATTACAACTC
Found at i:50632327 original size:6 final size:6
Alignment explanation
Indices: 50632316--50632344 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
50632306 GATAATTAAA
50632316 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
50632345 AGGTAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:50639011 original size:38 final size:37
Alignment explanation
Indices: 50638969--50639097 Score: 161
Period size: 38 Copynumber: 3.4 Consensus size: 37
50638959 ATAGAGTGAA
50638969 ACCATGAGAATAGTTATCTATTAGCTCTACGAAGCAAC
1 ACCATGAGAATAGTTATCTATT-GCTCTACGAAGCAAC
* * * *
50639007 ACCATGAGAATGGTTAACTACTGGCTCTACGGAGCAAC
1 ACCATGAGAATAGTTATCTA-TTGCTCTACGAAGCAAC
*
50639045 ACCATGAGAAT-GATTATCTATTGCCTCTACGAAGCGAC
1 ACCATGAGAATAG-TTATCTATTG-CTCTACGAAGCAAC
*
50639083 ACCATGAAAATAGTT
1 ACCATGAGAATAGTT
50639098 TACAGGTTCT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
37 3 0.04
38 73 0.94
39 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.25
Consensus pattern (37 bp):
ACCATGAGAATAGTTATCTATTGCTCTACGAAGCAAC
Found at i:50639064 original size:76 final size:76
Alignment explanation
Indices: 50638938--50639089 Score: 202
Period size: 76 Copynumber: 2.0 Consensus size: 76
50638928 CGGCATCGTG
* * *
50638938 GAATGGTTATCTACTAGCTCTATAGAGTGAAACCATGAGAATAGTTATCTATTAG-CTCTACGAA
1 GAATGGTTAACTACTAGCTCTACAGAGTCAAACCATGAGAATAGTTATCTATT-GCCTCTACGAA
50639002 GCAACACCATGA
65 GCAACACCATGA
* *
50639014 GAATGGTTAACTACTGGCTCTACGGAG-CAACACCATGAGAAT-GATTATCTATTGCCTCTACGA
1 GAATGGTTAACTACTAGCTCTACAGAGTCAA-ACCATGAGAATAG-TTATCTATTGCCTCTACGA
*
50639077 AGCGACACCATGA
64 AGCAACACCATGA
50639090 AAATAGTTTA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
75 4 0.06
76 63 0.94
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (76 bp):
GAATGGTTAACTACTAGCTCTACAGAGTCAAACCATGAGAATAGTTATCTATTGCCTCTACGAAG
CAACACCATGA
Found at i:50645054 original size:49 final size:50
Alignment explanation
Indices: 50644974--50645219 Score: 298
Period size: 49 Copynumber: 4.9 Consensus size: 50
50644964 ATCTATTGTG
* *
50644974 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * * *
50645024 -GGTCGCATGTGTAATACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * **
50645074 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
50645124 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
50645174 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
50645220 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 36 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:50645111 original size:28 final size:28
Alignment explanation
Indices: 50645079--50645162 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
50645069 AACTTCGATC
50645079 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
50645107 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
50645129 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
50645157 ACGTGT
1 ACGTGT
50645163 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:50650597 original size:27 final size:28
Alignment explanation
Indices: 50650434--50650584 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
50650424 GAGATTGGCG
* * * *
50650434 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
50650463 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50650491 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50650519 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50650547 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50650574 CTGAGTGTGCG
1 CTAAGTGTGCG
50650585 GACTTAATAT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 24 0.21
28 78 0.67
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:50650598 original size:84 final size:85
Alignment explanation
Indices: 50650434--50650598 Score: 228
Period size: 83 Copynumber: 2.0 Consensus size: 85
50650424 GAGATTGGCG
* *
50650434 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
* *
50650499 GCGAGTTTGATTATATAGCA
66 GCGAGCTTAATTATATAGCA
* * *
50650519 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
50650582 GCG-GACTTAATATATAT
66 GCGAG-CTTAAT-TATAT
50650599 TTTTGAATCA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
82 1 0.01
83 28 0.39
84 27 0.38
85 15 0.21
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (85 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGT
GCGAGCTTAATTATATAGCA
Found at i:50656596 original size:49 final size:50
Alignment explanation
Indices: 50656516--50656748 Score: 299
Period size: 49 Copynumber: 4.7 Consensus size: 50
50656506 ATCTATTGTG
*
50656516 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * * *
50656566 -GGTCGCATGTGTAATACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * **
50656616 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
50656666 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
50656716 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
50656749 TGCGTACCAG
Statistics
Matches: 155, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 71 0.46
50 48 0.31
51 36 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:50656653 original size:28 final size:28
Alignment explanation
Indices: 50656621--50656704 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
50656611 AACTTCGATC
50656621 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
50656649 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
50656671 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
50656699 ACGTGT
1 ACGTGT
50656705 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:50660191 original size:40 final size:40
Alignment explanation
Indices: 50660135--50660392 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
50660125 CGGATGATAA
* *
50660135 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
50660175 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50660215 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50660255 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50660295 CCGGGCTAGGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50660335 CCGGGCTAAGTCCCGAAGGGATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
50660375 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50660393 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 17 0.08
40 184 0.91
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50663733 original size:68 final size:68
Alignment explanation
Indices: 50663618--50663806 Score: 236
Period size: 68 Copynumber: 2.8 Consensus size: 68
50663608 ATGGGAAATT
* * * * *
50663618 ATGACACCATATTGTGTAAGACCATAGCTAGGTTAGGGCAACATATGAAGTTCACTAAGACAGTA
1 ATGACACCATATTGTGTAAGACCATAGCTAGGCTATGGCAACATATGAAGTCCACCAAGAAAGTA
50663683 AAC
66 AAC
* * * *
50663686 ATGACACCATATTGTGTAAGACTATAG-TAGAGCTATGACAACCTATGAAATCCACCAAGAAAGT
1 ATGACACCATATTGTGTAAGACCATAGCTAG-GCTATGGCAACATATGAAGTCCACCAAGAAAGT
50663750 AAAC
65 AAAC
* * * * *
50663754 ATAACATCATATAGTGTAAGACCATAGTTAGGCTCTGGCAACATATGAAGTCC
1 ATGACACCATATTGTGTAAGACCATAGCTAGGCTATGGCAACATATGAAGTCC
50663807 GCCAGGACAG
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
67 3 0.03
68 96 0.94
69 3 0.03
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.24
Consensus pattern (68 bp):
ATGACACCATATTGTGTAAGACCATAGCTAGGCTATGGCAACATATGAAGTCCACCAAGAAAGTA
AAC
Found at i:50665978 original size:5 final size:5
Alignment explanation
Indices: 50665968--50666004 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
50665958 CGAGTAAAAA
50665968 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
50666005 GGTTGGCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:50666675 original size:13 final size:15
Alignment explanation
Indices: 50666645--50666676 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
50666635 GAAATTTTTG
50666645 AAATGTATGTACTAT
1 AAATGTATGTACTAT
50666660 AAATGTA-GTA-TAT
1 AAATGTATGTACTAT
50666673 AAAT
1 AAAT
50666677 TTCAGCTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 3 0.18
15 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (15 bp):
AAATGTATGTACTAT
Found at i:50671638 original size:47 final size:47
Alignment explanation
Indices: 50671564--50671876 Score: 475
Period size: 47 Copynumber: 6.7 Consensus size: 47
50671554 GGTTGTTACA
*
50671564 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
50671611 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
50671658 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATA
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* *
50671705 TGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
*
50671752 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* * * * * * * *
50671799 TG-TGAATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
* * *
50671845 TGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
50671877 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 39 0.16
47 207 0.84
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
Found at i:50672051 original size:37 final size:37
Alignment explanation
Indices: 50671995--50672073 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
50671985 CCGAGCTCTA
* *
50671995 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
50672032 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50672069 AAGAC
1 AAGAC
50672074 TTCATAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50677920 original size:24 final size:24
Alignment explanation
Indices: 50677893--50677939 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
50677883 AAGGCTGTCA
*
50677893 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATGTAGGAGCTGATAAG
*
50677917 GGAGAGGATGTAGGAGCTGATAA
1 GGAGAAGATGTAGGAGCTGATAA
50677940 TGTAACACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.04, G:0.40, T:0.19
Consensus pattern (24 bp):
GGAGAAGATGTAGGAGCTGATAAG
Found at i:50679332 original size:27 final size:27
Alignment explanation
Indices: 50679302--50679457 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
50679292 TGCTATTCAC
* *
50679302 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
50679329 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
50679356 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
50679384 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
50679411 TCCTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
50679438 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
50679458 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:50679373 original size:55 final size:55
Alignment explanation
Indices: 50679307--50679458 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
50679297 TTCACTCAAC
* * *
50679307 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTACAT
* ** * * *
50679362 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
* *
50679416 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
50679459 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
Found at i:50687421 original size:27 final size:27
Alignment explanation
Indices: 50687391--50687544 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
50687381 TGCTATTCAC
* *
50687391 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * *
50687418 TCAAATCGCAC-CTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
50687444 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
50687472 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
* *
50687499 TCATTTCGCACACTTAGTGCAACAT-A
1 TCAATTCGCACACTTAGTGCCACATAA
50687525 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
50687545 TGTACAATTT
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
26 32 0.30
27 58 0.55
28 15 0.14
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:50687454 original size:54 final size:54
Alignment explanation
Indices: 50687370--50687545 Score: 175
Period size: 54 Copynumber: 3.3 Consensus size: 54
50687360 ATATTGAACC
* * * *
50687370 CGCACACTCAGTGCTAT--TCACTCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCAT-ATTCAATTCGCACACTTAGTGCCACAT-ATCAAAT
* * *
50687424 CGCAC-CTTAGTGCTA-CATAGTT-AGATTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ATTCGCACACTTAGTGCCACAT-ATCAAAT
* * *
50687478 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATATCGAAT
1 CGCACACTTAGTGCTATCATATTCAATTCGCACACTTAGTGCCACATATCAAAT
50687531 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50687546 GTACAATTTA
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
53 29 0.29
54 58 0.58
55 13 0.13
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTATCATATTCAATTCGCACACTTAGTGCCACATATCAAAT
Found at i:50689360 original size:24 final size:24
Alignment explanation
Indices: 50689327--50689384 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
50689317 GGCTGTTACA
*
50689327 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAAGGAGAAGATTTAGGAGCT
50689351 GATAAAGGAGAAGATTTAGGAGCT
1 GATAAAGGAGAAGATTTAGGAGCT
* *
50689375 AATCAAGGAG
1 GATAAAGGAG
50689385 CAGGAGTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.41, C:0.05, G:0.34, T:0.19
Consensus pattern (24 bp):
GATAAAGGAGAAGATTTAGGAGCT
Found at i:50693904 original size:29 final size:29
Alignment explanation
Indices: 50693862--50693920 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
50693852 TGTTATCGGC
50693862 TTTAAGGGCTGAGAAACTGATGCGTGACA
1 TTTAAGGGCTGAGAAACTGATGCGTGACA
50693891 TTTAAGGGCTGAGAAACTGATGCGTGACA
1 TTTAAGGGCTGAGAAACTGATGCGTGACA
50693920 T
1 T
50693921 ACTTGGCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.25
Consensus pattern (29 bp):
TTTAAGGGCTGAGAAACTGATGCGTGACA
Found at i:50697310 original size:47 final size:48
Alignment explanation
Indices: 50697241--50697345 Score: 158
Period size: 47 Copynumber: 2.2 Consensus size: 48
50697231 AAAGGTTGTC
* * *
50697241 AGGAGAAGATTTAGGAGCTGATAAGGGAGAGGATTTAGGAGCTGAT-A
1 AGGAGAGGATTTAGGAGCTGATAAAGGAGAAGATTTAGGAGCTGATCA
*
50697288 AGGAGAGGATTTCGGAGCTGATAAAGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAGGATTTAGGAGCTGATAAAGGAGAAGATTTAGGAGCTGATCA
50697336 AGGAGCAGGA
1 AGGAG-AGGA
50697346 GTTGGCCGGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 42 0.81
48 6 0.12
49 4 0.08
ACGTcount: A:0.36, C:0.07, G:0.38, T:0.19
Consensus pattern (48 bp):
AGGAGAGGATTTAGGAGCTGATAAAGGAGAAGATTTAGGAGCTGATCA
Found at i:50697339 original size:24 final size:23
Alignment explanation
Indices: 50697241--50697340 Score: 146
Period size: 24 Copynumber: 4.2 Consensus size: 23
50697231 AAAGGTTGTC
50697241 AGGAGAAGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
*
50697264 AGGGAGAGGATTTAGGAGCTGATA
1 A-GGAGAAGATTTAGGAGCTGATA
* *
50697288 AGGAGAGGATTTCGGAGCTGATAA
1 AGGAGAAGATTTAGGAGCTGAT-A
50697312 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
50697336 AGGAG
1 AGGAG
50697341 CAGGAGTTGG
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
23 21 0.30
24 49 0.70
ACGTcount: A:0.36, C:0.06, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:50702131 original size:39 final size:38
Alignment explanation
Indices: 50702068--50702242 Score: 226
Period size: 38 Copynumber: 4.5 Consensus size: 38
50702058 ATTTGATGTG
* * * *
50702068 TATCCGGGCTTAAAGACCCACAGGCTAT-ATGCTGGAAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCATGCTGGTATTA
50702108 TATCCGGGTTAAAATCCCGCAGGCTTCATGCTGGTATTA
1 TATCCGGGTT-AAATCCCGCAGGCTTCATGCTGGTATTA
* * *
50702147 TATCTGGGTTAAATCCCGCAGGCCTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
* *
50702185 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
50702223 TATCCGGGTTAAATCCCGCA
1 TATCCGGGTTAAATCCCGCA
50702243 AGTTTTGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
38 83 0.67
39 30 0.24
40 11 0.09
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
Found at i:50702178 original size:38 final size:38
Alignment explanation
Indices: 50702097--50702256 Score: 230
Period size: 38 Copynumber: 4.2 Consensus size: 38
50702087 ACAGGCTATA
* * *
50702097 TGCTGGAAATATATCCGGGTTAAAATCCCGCAGGCTTCA
1 TGCTGGTATTATATCCGGGTT-AAATCCCGCAGGCTTCG
* *
50702136 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCCTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
50702174 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
50702212 TGCTGGTATTATATCCGGGTTAAATCCCGCAAGTTTTG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
50702250 TGCTGGT
1 TGCTGGT
50702257 GACTGGATTC
Statistics
Matches: 111, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 93 0.84
39 18 0.16
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:50708601 original size:38 final size:38
Alignment explanation
Indices: 50708492--50708681 Score: 184
Period size: 38 Copynumber: 4.9 Consensus size: 38
50708482 ATTTGATGTG
* * * * * *
50708492 TATCCGGGCTTAAAGACCCTCAGGCTATATGCTGGAAATA
1 TATCCGGG-TTAAA-TCCCACAGGCTTTGTGCTGGTATTA
* * *
50708532 TATCCGGGTTAAAATCCTACAGGATTCGTGCTGGTATTA
1 TATCCGGGTT-AAATCCCACAGGCTTTGTGCTGGTATTA
50708571 TATCCGGGTTAAATCCCACAGGCTTTGTGCTGGTATTA
1 TATCCGGGTTAAATCCCACAGGCTTTGTGCTGGTATTA
* *
50708609 TATCCGGGTTAAATCCCATAGGCCTT-TGCTGGTATTA
1 TATCCGGGTTAAATCCCACAGGCTTTGTGCTGGTATTA
* * ** *
50708646 TATCTGAGCTTAAAGTCCCGTAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAA-TCCCACAGGCTTTGTGCTGGT
50708682 GATTGGATTC
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
37 16 0.13
38 55 0.43
39 38 0.30
40 18 0.14
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCACAGGCTTTGTGCTGGTATTA
Found at i:50713591 original size:20 final size:18
Alignment explanation
Indices: 50713557--50713652 Score: 65
Period size: 18 Copynumber: 5.2 Consensus size: 18
50713547 ATGGTAAAAT
* *
50713557 AAATATAATATATATAGTAA
1 AAATATAA-ACATATAAT-A
50713577 AAATATATAACATATAATA
1 AAATATA-AACATATAATA
50713596 AAATATAAACA-A-AATA
1 AAATATAAACATATAATA
* * *
50713612 GAATGA-ATAATATATATTA
1 AAAT-ATA-AACATATAATA
50713631 AAA-ATATAACATATAATA
1 AAATATA-AACATATAATA
50713649 AAAT
1 AAAT
50713653 TTATAAAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 15
0.73 0.10 0.18
Matches are distributed among these distances:
16 8 0.13
17 6 0.10
18 19 0.31
19 13 0.21
20 14 0.23
21 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (18 bp):
AAATATAAACATATAATA
Found at i:50713601 original size:53 final size:50
Alignment explanation
Indices: 50713551--50713679 Score: 136
Period size: 53 Copynumber: 2.5 Consensus size: 50
50713541 ATGAATATGG
50713551 TAAAATAAATATAATATATATAGTAAAAATATATAACATATAATAAAATATAAA
1 TAAAATAAATATAATATATATA-T-AAAA-ATATAACATATAATAAAATAT-AA
* *
50713605 CAAAATAGAATGAATAATATATAT-TAAAAATATAACATATAATAAAAT-TTA
1 TAAAATA-AAT--ATAATATATATATAAAAATATAACATATAATAAAATATAA
**
50713656 TAAAAATGTATATAATATATATAT
1 T-AAAATAAATATAATATATATAT
50713680 TATTTTATAT
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
49 11 0.17
50 1 0.02
51 3 0.05
52 6 0.09
53 19 0.29
54 10 0.15
55 4 0.06
57 11 0.17
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.33
Consensus pattern (50 bp):
TAAAATAAATATAATATATATATAAAAATATAACATATAATAAAATATAA
Found at i:50718033 original size:50 final size:49
Alignment explanation
Indices: 50717924--50718053 Score: 172
Period size: 50 Copynumber: 2.6 Consensus size: 49
50717914 CTGGTACGCA
* * * **
50717924 TAGTAGCCTGCATTTAGTACTACACATGTGACCAATAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
50717973 TAGTAGCCTGCACTTAATACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
50718023 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
50718054 TCATAGTTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
49 28 0.39
50 40 0.56
51 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:50718107 original size:101 final size:99
Alignment explanation
Indices: 50717924--50718110 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
50717914 CTGGTACGCA
* * *
50717924 TAGTAGCCTGCATTTAGTACTACACATGTGACCAATAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAGTCTGGTACACATAGTAGCCTGCACTTA
*
50717989 ATACTACACACGTGACCTCACCATCTAATACACG
66 ATACTACACACGCGACCTCACCATCTAATACACG
* * *
50718023 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTCGAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAG-TCT-G-GTACACATAGTAGCCTGCAC
* * *
50718087 TTAGTACTATACATGCGACCTCAC
63 TTAATACTACACACGCGACCTCAC
50718111 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 32 0.43
100 1 0.01
101 38 0.51
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATAGTCTGGTACACATAGTAGCCTGCACTTA
ATACTACACACGCGACCTCACCATCTAATACACG
Found at i:50725863 original size:15 final size:15
Alignment explanation
Indices: 50725843--50725878 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
50725833 CTATCTTCTA
50725843 TCCTCAACTCAAATT
1 TCCTCAACTCAAATT
50725858 TCCTCAACTCAAATT
1 TCCTCAACTCAAATT
50725873 TCCTCA
1 TCCTCA
50725879 TTCATTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.33
Consensus pattern (15 bp):
TCCTCAACTCAAATT
Found at i:50726546 original size:13 final size:13
Alignment explanation
Indices: 50726528--50726552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50726518 CACAACATGT
50726528 ATGTTTTAATTTA
1 ATGTTTTAATTTA
50726541 ATGTTTTAATTT
1 ATGTTTTAATTT
50726553 CCCACCCGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (13 bp):
ATGTTTTAATTTA
Found at i:50729490 original size:28 final size:28
Alignment explanation
Indices: 50729450--50729504 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
50729440 AGCATGCAGT
* ** *
50729450 AACAGTCTAGGCCTTAGCCCTATACAGA
1 AACAGTATAGGCCCAAGCCCAATACAGA
*
50729478 AACAGTATGGGCCCAAGCCCAATACAG
1 AACAGTATAGGCCCAAGCCCAATACAG
50729505 TATCAGTACA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.35, C:0.29, G:0.20, T:0.16
Consensus pattern (28 bp):
AACAGTATAGGCCCAAGCCCAATACAGA
Found at i:50729706 original size:27 final size:26
Alignment explanation
Indices: 50729674--50729753 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
50729664 AGAAACATTG
* *
50729674 AATGTGGCAAAGGCACCAGTATCAGT
1 AATGTGGCATAGCCACCAGTATCAGT
50729700 AATTGTGGCATAGCCACCAGTATCAGT
1 AA-TGTGGCATAGCCACCAGTATCAGT
* *
50729727 GAATGTGACATAGTCACCAGTA-CAGT
1 -AATGTGGCATAGCCACCAGTATCAGT
50729753 A
1 A
50729754 CTTCCTCCAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 1 0.02
26 6 0.12
27 39 0.81
28 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (26 bp):
AATGTGGCATAGCCACCAGTATCAGT
Found at i:50729947 original size:26 final size:26
Alignment explanation
Indices: 50729890--50729949 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
50729880 GGGCATACTT
*
50729890 ATCATTTTACCTTACAAGGGCATTAC
1 ATCATTTTACCCTACAAGGGCATTAC
* *
50729916 AGTCATTTTACCCTATAAGGG-ATTATG
1 A-TCATTTTACCCTACAAGGGCATTA-C
50729943 ATCATTT
1 ATCATTT
50729950 CTATCCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 11 0.38
27 18 0.62
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (26 bp):
ATCATTTTACCCTACAAGGGCATTAC
Found at i:50736361 original size:41 final size:40
Alignment explanation
Indices: 50736304--50736383 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 40
50736294 AGGTTTTTAC
*
50736304 ACACGGGCTAGGACACGGGCGTGT-CATGGCCGTGTGAAGG
1 ACACGGGCAAGGACACGGGCGTGTCCA-GGCCGTGTGAAGG
*
50736344 ACACGGGCCAAGGACACGGGTGTGTGCCAGGCCGTGTGAA
1 ACACGGG-CAAGGACACGGGCGTGT-CCAGGCCGTGTGAA
50736384 AACCCCTGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 7 0.20
41 15 0.43
42 11 0.31
43 2 0.06
ACGTcount: A:0.21, C:0.24, G:0.41, T:0.14
Consensus pattern (40 bp):
ACACGGGCAAGGACACGGGCGTGTCCAGGCCGTGTGAAGG
Found at i:50736541 original size:20 final size:21
Alignment explanation
Indices: 50736502--50736541 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
50736492 GTTGAAATGG
*
50736502 CCACACGGGCATGTTGCCCTT
1 CCACACAGGCATGTTGCCCTT
*
50736523 CCACACAGGCGTG-TGCCCT
1 CCACACAGGCATGTTGCCCT
50736542 ATTTCAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACAGGCATGTTGCCCTT
Found at i:50739829 original size:37 final size:37
Alignment explanation
Indices: 50739788--50739944 Score: 192
Period size: 37 Copynumber: 4.2 Consensus size: 37
50739778 GGTAGGTTAA
50739788 CTCTTATGAGCATTTGGCATGTTATCAAGTGGATTAG
1 CTCTTATGAGCATTTGGCATGTTATCAAGTGGATTAG
* *
50739825 CTCTTATGAGCATTTGGCGTGTTATCAGGTGGATTAG
1 CTCTTATGAGCATTTGGCATGTTATCAAGTGGATTAG
** * *
50739862 CTCTTATGAGCATTTGGCATGTTAT-TGGATGGATGAT
1 CTCTTATGAGCATTTGGCATGTTATCAAG-TGGATTAG
** * *
50739899 CTCTTATGAGCATTTGGTGTTTTATTC-AGTGGTTTAG
1 CTCTTATGAGCATTTGGCATGTTA-TCAAGTGGATTAG
50739936 CTCTTATGA
1 CTCTTATGA
50739945 TTGATTGGCG
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
36 2 0.02
37 100 0.96
38 2 0.02
ACGTcount: A:0.20, C:0.13, G:0.25, T:0.41
Consensus pattern (37 bp):
CTCTTATGAGCATTTGGCATGTTATCAAGTGGATTAG
Found at i:50739883 original size:74 final size:73
Alignment explanation
Indices: 50739762--50739944 Score: 226
Period size: 74 Copynumber: 2.5 Consensus size: 73
50739752 ATACTCCCTG
* * * *
50739762 ATTTGGTGTGATATCGGGTAGGTTAACTCTTATGAGCATTTGGCATGTTATCAAG-TGGATTAGC
1 ATTTGGTGTGTTATCAGGT-GGTTAGCTCTTATGAGCATTTGGCATGTTAT-AAGATGGATGAGC
50739826 TCTTATGAGC
64 TCTTATGAGC
* ** *
50739836 ATTTGGCGTGTTATCAGGTGGATTAGCTCTTATGAGCATTTGGCATGTTATTGGATGGATGATCT
1 ATTTGGTGTGTTATCAGGTGG-TTAGCTCTTATGAGCATTTGGCATGTTATAAGATGGATGAGCT
50739901 CTTATGAGC
65 CTTATGAGC
*
50739910 ATTTGGTGTTTTATTCA-GTGGTTTAGCTCTTATGA
1 ATTTGGTGTGTTA-TCAGGTGG-TTAGCTCTTATGA
50739945 TTGATTGGCG
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
73 3 0.03
74 89 0.94
75 3 0.03
ACGTcount: A:0.21, C:0.11, G:0.27, T:0.41
Consensus pattern (73 bp):
ATTTGGTGTGTTATCAGGTGGTTAGCTCTTATGAGCATTTGGCATGTTATAAGATGGATGAGCTC
TTATGAGC
Found at i:50742780 original size:47 final size:47
Alignment explanation
Indices: 50742723--50742947 Score: 330
Period size: 47 Copynumber: 4.8 Consensus size: 47
50742713 ATGTATCATA
* * *
50742723 AGCCAGTGTAAGA-CATGTTTTGGGACAT-GCATCGGCTACGAGATGAT-
1 AGCCAGTGTAAGACCATG-TCTGGGACATGGCATCGACT-TGAGATG-TG
*
50742770 AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTG
* *
50742817 AGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTG
* *
50742864 AGCCAATGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTG
50742911 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
50742948 ACTTTACCTA
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 151 0.92
48 12 0.07
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTG
Found at i:50745421 original size:26 final size:26
Alignment explanation
Indices: 50745372--50745422 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
50745362 AATGGTAGTT
*
50745372 AAATGTTAAATTTATATGTTGTTATG
1 AAATGTTAAATTTATATGTGGTTATG
50745398 AAATGTTAGAATTTATAT-TGGTTAT
1 AAATGTTA-AATTTATATGTGGTTAT
50745423 TACTAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (26 bp):
AAATGTTAAATTTATATGTGGTTATG
Found at i:50753756 original size:26 final size:25
Alignment explanation
Indices: 50753707--50753759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 25
50753697 AATGGTAGTT
50753707 AAATGTTAAATTTATATGCTGTTATG
1 AAATGTTAAATTTATATGC-GTTATG
50753733 AAATGTTAGAATTTATATTG-GTTATG
1 AAATGTTA-AATTTATA-TGCGTTATG
50753759 A
1 A
50753760 CTAAATATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.60
27 8 0.32
28 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (25 bp):
AAATGTTAAATTTATATGCGTTATG
Found at i:50760072 original size:25 final size:25
Alignment explanation
Indices: 50760038--50760087 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
50760028 CTGTTGAAGC
50760038 TGTGATGGGTCAAAGAAGAAACAAA
1 TGTGATGGGTCAAAGAAGAAACAAA
50760063 TGTGATGGGTCAAAGAAGAAACAAA
1 TGTGATGGGTCAAAGAAGAAACAAA
50760088 GTGTTTCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.28, T:0.16
Consensus pattern (25 bp):
TGTGATGGGTCAAAGAAGAAACAAA
Found at i:50762077 original size:47 final size:47
Alignment explanation
Indices: 50762005--50762127 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
50761995 ATCCATAAGT
* *
50762005 GAACTCAGACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
50762052 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* *
50762099 GAGCTCGGACTCAACTCAACGAGCTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
50762128 ACTCAAATAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50773924 original size:12 final size:12
Alignment explanation
Indices: 50773907--50773931 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50773897 AACACCGTAG
50773907 TTTTCAACCCAT
1 TTTTCAACCCAT
50773919 TTTTCAACCCAT
1 TTTTCAACCCAT
50773931 T
1 T
50773932 AACTCAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (12 bp):
TTTTCAACCCAT
Found at i:50780026 original size:16 final size:16
Alignment explanation
Indices: 50780005--50780059 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
50779995 TGAATTACTT
50780005 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* *
50780021 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
* *
50780037 AATACAGCTCTATTTC
1 ATTACAGCTCTATTCC
50780053 ATTACAG
1 ATTACAG
50780060 TGAACCAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:50784576 original size:122 final size:123
Alignment explanation
Indices: 50784359--50784604 Score: 422
Period size: 122 Copynumber: 2.0 Consensus size: 123
50784349 GAATGATACA
* * *
50784359 ATAAAAATAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCTGGATTGAAACATACT
1 ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTAAAACATACT
*
50784424 CTAAAATATCAAAACTTCCTCCCAACCATAATTCCAAGAAGACAA-CTTTAATCTTAT
66 CTAAAATATCAAAACTTCCTCCCAACCATAATTCCAAGAAGACAACCTTAAATCTTAT
* *
50784481 ATAAAAAAATATATGGAAGGTTAGTTCACTCTTTCTCTAAGGTTTTACCCGGATTAAAACATACT
1 ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTAAAACATACT
*
50784546 CTAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACCTTAAATCTTAT
66 CTAAAATATCAAAACTTCCTCCCAACCATAATTCCAAGAAGACAACCTTAAATCTTAT
50784604 A
1 A
50784605 GAGTATCTAT
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
122 104 0.90
123 12 0.10
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (123 bp):
ATAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTAAAACATACT
CTAAAATATCAAAACTTCCTCCCAACCATAATTCCAAGAAGACAACCTTAAATCTTAT
Found at i:50786355 original size:62 final size:61
Alignment explanation
Indices: 50786289--50786412 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 61
50786279 GAGACCTTAT
50786289 AAACATGGTCACAAGAAGGGTCTCGCAATGAGAAAAAAAAAAGAGGGAAAGATAAGTGAGGA
1 AAACATGGTCACAAGAAGGGTCTCGCAATGAG-AAAAAAAAAGAGGGAAAGATAAGTGAGGA
50786351 AAACATGGTCACAAGAAGGGTCTCGCAATGAGAAAAAAAAAGAGGGAAAGATAAGTGAGGA
1 AAACATGGTCACAAGAAGGGTCTCGCAATGAGAAAAAAAAAGAGGGAAAGATAAGTGAGGA
50786412 A
1 A
50786413 GGGGAAGAAA
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
61 30 0.48
62 32 0.52
ACGTcount: A:0.50, C:0.10, G:0.29, T:0.11
Consensus pattern (61 bp):
AAACATGGTCACAAGAAGGGTCTCGCAATGAGAAAAAAAAAGAGGGAAAGATAAGTGAGGA
Found at i:50786429 original size:62 final size:61
Alignment explanation
Indices: 50786298--50786412 Score: 196
Period size: 61 Copynumber: 1.9 Consensus size: 61
50786288 TAAACATGGT
**
50786298 CACAAGAAGGGTCTCGCAATGAGAAAAAAAAAAGAGGGAAAGATAAGTGAGGAAAACATGG
1 CACAAGAAGGGTCTCGCAATGAGAAAAAAAAAAGAGGGAAAGATAAGTGAGGAAAACAAAG
50786359 TCACAAGAAGGGTCTCGCAATGAG-AAAAAAAAAGAGGGAAAGATAAGTGAGGAA
1 -CACAAGAAGGGTCTCGCAATGAGAAAAAAAAAAGAGGGAAAGATAAGTGAGGAA
50786413 GGGGAAGAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
61 30 0.57
62 23 0.43
ACGTcount: A:0.50, C:0.10, G:0.30, T:0.10
Consensus pattern (61 bp):
CACAAGAAGGGTCTCGCAATGAGAAAAAAAAAAGAGGGAAAGATAAGTGAGGAAAACAAAG
Found at i:50787054 original size:110 final size:108
Alignment explanation
Indices: 50786523--50787339 Score: 730
Period size: 110 Copynumber: 7.7 Consensus size: 108
50786513 TTATTAATTA
** * * *
50786523 TTATAAATTGTTTGTGTTTAGTTTGGTG-TT-TTGTGATTTTTT-T---TATAAA-TGTTATTTT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTT
* *
50786581 TTTAATTATTTGAAAGTAATTTTGTTAATAATTTATGATTAGG
66 TTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * * * ** * *
50786624 TTATAAATTGTTTGTATTTAGTTTAGTG-TT-TTATGAATTAATATTAATGTAAA---ATTTTTT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTT
* ** * * *
50786684 TTAAAAAAATT-ATAGTTATTTTGTTAATAATTTATGATTAGG
66 TTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * * *
50786726 TTATAAATTATTTGTGTTCAGTTTAGTG-TT-TTGTGA-TTTTTATGAATGTAAA-TTTTTTATT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTT
* * *
50786787 TTTAATTATTTTATAGTTATTCTGTTAGTAATTTATGATTAGG
66 TTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * *
50786830 TTATAAATTTTTTGTGTTTAGTTT-A-GTTTTTTGTGATTTTTCATGAATGTAATTATTTTTTTT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAA--A---TTTTT
** * *
50786893 TTGTATTTTTAAAATTATTTGAAAGACATTTTGATAGTAATTTATGGTTAGG
61 TT-T-TTTTT--AATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* *
50786945 TTATAAATTGTTTGTATTTAATTTAATGTTTATTGTGATTTTTTATGAATGTAAAATTTTTTGTT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGT-AAATTTTTT-TT
* * *
50787010 TTTTTTATTATTTGAAAGTTATTTTATTAGTAATTTCTGATTAGG
64 TTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * **
50787055 TTATAAATTATTTGTATTTAGTTT-AT-TTTATTGTGA-TTTTT-T--AT-T-AA-TTTAATTTT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTT
* *
50787111 TTAAATTATTTTG-AAGTTATTTTGTTAGTAATTTATTATTAGG
66 TTTAATTA-TTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* * ** * *
50787154 TTATAAATTGTTTGTGTTTAGTTTAGTGTTTAATGTGACCTGTTATAAATGT-AATTTTTTGTGT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTT-T-T
*
50787218 TTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGG
64 TTTTT-AATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
* *
50787264 TTATAAATT-TTT-TGTTTAGTTTAATGTGTATTGTGATTTGTTAT-AATGT-AATTTTATTTGT
1 TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTT-TTT-T
* *
50787325 TTTTGATTTATTTGA
64 TTTTTAATTATTTGA
50787340 TAATTTTTTT
Statistics
Matches: 596, Mismatches: 82, Indels: 71
0.80 0.11 0.09
Matches are distributed among these distances:
99 59 0.10
100 8 0.01
101 60 0.10
102 66 0.11
103 28 0.05
104 59 0.10
105 21 0.04
106 12 0.02
107 27 0.05
108 40 0.07
109 13 0.02
110 98 0.16
111 6 0.01
112 5 0.01
113 12 0.02
114 1 0.00
115 54 0.09
116 2 0.00
117 23 0.04
118 2 0.00
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.58
Consensus pattern (108 bp):
TTATAAATTGTTTGTGTTTAGTTTAATGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTT
TTTAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGG
Found at i:50787111 original size:99 final size:99
Alignment explanation
Indices: 50787008--50787318 Score: 333
Period size: 99 Copynumber: 3.0 Consensus size: 99
50786998 AAATTTTTTG
* * *
50787008 TTTTTTTTATTATTTGAAAGTTATTTTATTAGTAATTTCTGATTAGGTTATAAATTATTTGTATT
1 TTTTTTTTATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT-TTTGTGTT
50787073 TAGTTTAT-TTTATTGTGATTTTTTATTAATTTAA
65 TAGTTTATGTTTATTGTGATTTTTTATTAATTTAA
** *
50787107 TTTTTTAAATTATTTTG-AAGTTATTTTGTTAGTAATTTATTATTAGGTTATAAATTGTTTGTGT
1 TTTTTTTTATTA-TTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATT-TTTGTGT
* ** **
50787171 TTAGTTTAGTGTTTAATGTGACCTGTTATAAATGTAATTTTT
64 TTAGTTTA-TGTTTATTGTGA--T-TT-TTTAT-TAATTTAA
*
50787213 TGTGTTTTTTAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTTTT-T
1 T-T-TTTTTT--ATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTTTTGT
* * *
50787277 GTTTAGTTTAATGTGTATTGTGATTTGTTA-TAATGTAA
62 GTTTAGTTT-ATGTTTATTGTGATTTTTTATTAATTTAA
50787315 TTTT
1 TTTT
50787319 ATTTGTTTTT
Statistics
Matches: 174, Mismatches: 24, Indels: 27
0.77 0.11 0.12
Matches are distributed among these distances:
99 60 0.34
100 7 0.04
101 10 0.06
102 6 0.03
103 1 0.01
104 3 0.02
105 5 0.03
106 8 0.05
107 1 0.01
108 24 0.14
109 7 0.04
110 42 0.24
ACGTcount: A:0.27, C:0.01, G:0.14, T:0.59
Consensus pattern (99 bp):
TTTTTTTTATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTTTTGTGTTT
AGTTTATGTTTATTGTGATTTTTTATTAATTTAA
Found at i:50787167 original size:209 final size:208
Alignment explanation
Indices: 50786897--50787318 Score: 557
Period size: 209 Copynumber: 2.0 Consensus size: 208
50786887 TTTTTTTTGT
*
50786897 ATTTTTAAAATTATTTGAAAGACATTTTGATAGTAATTTATGGTTAGGTTATAAATTGTTTGTAT
1 ATTTTTAAAATTATTTGAAAGACATTTTGATAGTAATTTATGATTAGGTTATAAATTGTTTGTAT
* ** * * *
50786962 TTAATTTAATGTTTATTGTGATTTTTTATGAATGTAAAATTTTTTGT-TTTTTT-TATTATTTGA
66 TTAATTTAATGTTTAATGTGACCTGTTATAAATGT--AATTTTTTGTGTTTTTTAAATTATTTGA
* *
50787025 AAGTTATTTTATTAGTAATTTCTGATTAGGTTATAAATTATTTGTATTTAGTTT-AT-TTTATTG
129 AAGTTATTTTATTAGTAATTTATGATTAGGTTATAAATT-TTT-TATTTAGTTTAATGTGTATTG
* *
50787088 TGATTTTTTATTAATTTA
192 TGATTTGTTA-TAATGTA
* ** * * *
50787106 ATTTTTTAAATTATTTTG-AAGTTATTTTGTTAGTAATTTATTATTAGGTTATAAATTGTTTGTG
1 ATTTTTAAAATTA-TTTGAAAGACATTTTGATAGTAATTTATGATTAGGTTATAAATTGTTTGTA
* * *
50787170 TTTAGTTTAGTGTTTAATGTGACCTGTTATAAATGTAATTTTTTGTGTTTTTTAAATTATTTTAA
65 TTTAATTTAATGTTTAATGTGACCTGTTATAAATGTAATTTTTTGTGTTTTTTAAATTATTTGAA
* *
50787235 AGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTTTTTGTTTAGTTTAATGTGTATTGTGA
130 AGTTATTTTATTAGTAATTTATGATTAGGTTATAAATTTTTTATTTAGTTTAATGTGTATTGTGA
50787300 TTTGTTATAATGTA
195 TTTGTTATAATGTA
50787314 ATTTT
1 ATTTT
50787319 ATTTGTTTTT
Statistics
Matches: 186, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
207 19 0.10
208 22 0.12
209 141 0.76
210 4 0.02
ACGTcount: A:0.28, C:0.01, G:0.14, T:0.57
Consensus pattern (208 bp):
ATTTTTAAAATTATTTGAAAGACATTTTGATAGTAATTTATGATTAGGTTATAAATTGTTTGTAT
TTAATTTAATGTTTAATGTGACCTGTTATAAATGTAATTTTTTGTGTTTTTTAAATTATTTGAAA
GTTATTTTATTAGTAATTTATGATTAGGTTATAAATTTTTTATTTAGTTTAATGTGTATTGTGAT
TTGTTATAATGTA
Found at i:50790447 original size:15 final size:15
Alignment explanation
Indices: 50790427--50790458 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50790417 TATAGGATTG
*
50790427 AATGAAAAGGAAGTA
1 AATGAAAAAGAAGTA
50790442 AATGAAAAAGAAGTA
1 AATGAAAAAGAAGTA
50790457 AA
1 AA
50790459 CTTGTAAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.22, T:0.12
Consensus pattern (15 bp):
AATGAAAAAGAAGTA
Found at i:50802874 original size:29 final size:28
Alignment explanation
Indices: 50802842--50802896 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
50802832 ATGAGATAAA
50802842 CTGATTTGGATTCAGGCCATGCATATCGG
1 CTGATTTGGATTCAGGCCATG-ATATCGG
*
50802871 CTGATTTGGCTTCAGGCCATGATATC
1 CTGATTTGGATTCAGGCCATGATATC
50802897 AGTACTTCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGATTTGGATTCAGGCCATGATATCGG
Found at i:50808113 original size:94 final size:94
Alignment explanation
Indices: 50807952--50808139 Score: 322
Period size: 94 Copynumber: 2.0 Consensus size: 94
50807942 AATGTGACCG
*
50807952 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGCG
* *
50808017 GAATTAAATGTCACTTTGTATGCAGATTT
66 GAATTAAATGGCACTATGTATGCAGATTT
* *
50808046 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGCG
*
50808111 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGGCACTATGTATGCAGATTT
50808140 GAATGTCGAT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGCG
GAATTAAATGGCACTATGTATGCAGATTT
Found at i:50808200 original size:24 final size:24
Alignment explanation
Indices: 50808168--50808229 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
50808158 GAAAATTTCA
* *
50808168 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
50808192 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
50808216 AGCACTATGTGTGC
1 GGCACTATGTGTGC
50808230 AAATTTGGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 29 0.85
25 5 0.15
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.34
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:50814976 original size:94 final size:90
Alignment explanation
Indices: 50814817--50815000 Score: 262
Period size: 94 Copynumber: 2.0 Consensus size: 90
50814807 AATGTGACCG
50814817 TATATGCTATTTGAATTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGACGAAT
1 TATATGCTATTTGAATTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGACGAAT
* *
50814882 TAAATGTCACTTTGTATGCAGATTT
66 TAAATGGCACTATGTATGCAGATTT
* *
50814907 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTG-C
1 TATATGCTATTTGAATTAAG----TTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGAC
* *
50814971 GGAATTAAATGGCACTATGTGTGCTGATTT
62 -GAATTAAATGGCACTATGTATGCAGATTT
50815001 GAATGTCGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
90 20 0.24
93 1 0.01
94 62 0.75
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (90 bp):
TATATGCTATTTGAATTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGGGACGAAT
TAAATGGCACTATGTATGCAGATTT
Found at i:50816977 original size:30 final size:30
Alignment explanation
Indices: 50816955--50817032 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
50816945 CACGAGTGAT
*
50816955 CCACACACCCGTGTGTCACACACGGGTAGA
1 CCACACGCCCGTGTGTCACACACGGGTAGA
50816985 CCACACGCCCGTGTGTCACACACGGGTAGA
1 CCACACGCCCGTGTGTCACACACGGGTAGA
*
50817015 CCACACGCCCATGTGTCA
1 CCACACGCCCGTGTGTCA
50817033 TGACCATGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.24, C:0.38, G:0.23, T:0.14
Consensus pattern (30 bp):
CCACACGCCCGTGTGTCACACACGGGTAGA
Found at i:50818808 original size:41 final size:41
Alignment explanation
Indices: 50818748--50818827 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
50818738 TGCTACGAGG
* * *
50818748 ATCAATCACCACTTGGGAACAAATGATCGAAAATTTTTTTA
1 ATCAATCACCACTTAGGAACAAATGATCAAAAAATTTTTTA
50818789 ATCAATCACCACTTAGGAACAAATGATCAAAAAATTTTT
1 ATCAATCACCACTTAGGAACAAATGATCAAAAAATTTTT
50818828 ACTTAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.30
Consensus pattern (41 bp):
ATCAATCACCACTTAGGAACAAATGATCAAAAAATTTTTTA
Found at i:50828667 original size:30 final size:30
Alignment explanation
Indices: 50828611--50828668 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
50828601 TAGGCACTTC
*
50828611 CACACGGGTGAGCCACACGCCCGTGTGTGA
1 CACACGGGTGAGCCACACACCCGTGTGTGA
* *
50828641 CACACGGGT-AGACCACACATCTGTGTGT
1 CACACGGGTGAG-CCACACACCCGTGTGT
50828669 CATGGCCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (30 bp):
CACACGGGTGAGCCACACACCCGTGTGTGA
Found at i:50839303 original size:27 final size:27
Alignment explanation
Indices: 50839273--50839428 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
50839263 TGCTATTCAC
* *
50839273 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
50839300 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
50839327 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
50839355 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
50839382 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
50839409 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
50839429 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:50839344 original size:55 final size:55
Alignment explanation
Indices: 50839278--50839429 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
50839268 TTCACTCAAC
* *
50839278 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
50839333 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
50839387 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
50839430 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:50847366 original size:27 final size:27
Alignment explanation
Indices: 50847336--50847491 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
50847326 TGCTATTCAC
* *
50847336 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
50847363 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
50847390 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
50847418 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
50847445 TCTTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
50847472 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
50847492 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:50847407 original size:55 final size:55
Alignment explanation
Indices: 50847341--50847492 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
50847331 TTCACTCAAC
* *
50847341 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTAGAT
* ** * ***
50847396 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCTTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
* *
50847450 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
50847493 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTAGAT
Found at i:50856397 original size:46 final size:45
Alignment explanation
Indices: 50856344--50856519 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
50856334 TATTTGGGCA
*
50856344 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
50856390 TCCGAACTTGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
50856437 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
50856483 CCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50856520 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:50856499 original size:93 final size:93
Alignment explanation
Indices: 50856340--50856511 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
50856330 AGGATATTTG
* * * **
50856340 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
50856405 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
50856433 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
50856498 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50856512 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:50859335 original size:57 final size:58
Alignment explanation
Indices: 50859206--50859350 Score: 177
Period size: 57 Copynumber: 2.5 Consensus size: 58
50859196 TTGCTGATAT
* * **
50859206 GATTTAGCCTGGATTGGTAATCCTAATATAATCCCTTCCGAGCATATGTTACAATTAG
1 GATTTAGCCTGGACTGGTAATCCTAATATAATCCCTTCCGAGCATATATTACAAAAAG
* * *
50859264 GATTTAGCCTGGACTGGTAATCCTAAT-TGAGT-TCTTCTGAGCATATATTACAAAAAG
1 GATTTAGCCTGGACTGGTAATCCTAATAT-AATCCCTTCCGAGCATATATTACAAAAAG
* * *
50859321 GATTTAGCCAGGACTAGTAATCCTATTATA
1 GATTTAGCCTGGACTGGTAATCCTAATATA
50859351 TGTTATAAGG
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 46 0.61
58 29 0.39
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (58 bp):
GATTTAGCCTGGACTGGTAATCCTAATATAATCCCTTCCGAGCATATATTACAAAAAG
Found at i:50860131 original size:24 final size:24
Alignment explanation
Indices: 50860104--50860150 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
50860094 TAAAATTTGC
50860104 TTGAATCA-AATGCTTGAATTGGTA
1 TTGAAT-ATAATGCTTGAATTGGTA
*
50860128 TTGAATATAATGCTTGGATTGGT
1 TTGAATATAATGCTTGAATTGGT
50860151 TGGTATTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.40
Consensus pattern (24 bp):
TTGAATATAATGCTTGAATTGGTA
Found at i:50863878 original size:377 final size:378
Alignment explanation
Indices: 50863126--50863883 Score: 1313
Period size: 377 Copynumber: 2.0 Consensus size: 378
50863116 GGATTTTGTG
*
50863126 TTAGAATTGACTGTGACTCCAAGAAAGAAAGATTCGATCTAGGTGATTGAGGAAAAGATTGACAA
1 TTAGAACTGACTGTGACTCCAAGAAAGAAAGATTCGATCTAGGTGATTGAGGAAAAGATTGACAA
* * * *
50863191 AATCAACATATTTTATTCTGGTCAGAACAAACTTTTCATTTGAGAAGTTAGCGGAGTTGTATATG
66 AATCAACACATTTTATTCTGGTCAAAACAAACTTTTCACTTGAGAAGTTAGCGAAGTTGTATATG
50863256 TCTAAGATTGTGAGACTACATGGGGTTCCAACATCCATTATCTCAGATTGACATCCGAGGTTTAC
131 TCTAAGATTGTGAGACTACATGGGGTTCCAACATCCATTATCTCAGATTGACATCCGAGGTTTAC
**
50863321 ATCGAGGTTTTGGAGTAAATTACAAAAAGCCCTAGGTACTAAGTTGAATTTCAGCACATCTTTTC
196 ATCGAGGTTTTGGAGTAAATTACAAAAAGCCCTAGGTACTAAGTTGAATTTCAGCACAGATTTTC
*
50863386 ATCCTCAGACTGATGGACAATCAGAACTAGTGATTCAAATTTTAGAAGATATGTTGAGATGTTGT
261 ATCCTCAGACTGATGGACAATCAGAACGAGTGATTCAAATTTTAGAAGATATGTTGAGATGTTGT
50863451 ATACTCGAGTTTGGAGATAGTTGGGAAAGGTACTTACCAGTGGCCGAATTTGC
326 ATACTCGAGTTTGGAGATAGTTGGGAAAGGTACTTACCAGTGGCCGAATTTGC
* *
50863504 TTAGAACTGACTGTGACTCCAAGAAAGAAAGATTTGATCTAGGTGATTGTA-G-ACAGATTGACA
1 TTAGAACTGACTGTGACTCCAAGAAAGAAAGATTCGATCTAGGTGATTG-AGGAAAAGATTGACA
* *
50863567 AAATCAACACATTTTTTTCTGGTCAAAACAAACTTTTCACTTGTGAAGTTAGCGAAGTTGTATAT
65 AAATCAACACATTTTATTCTGGTCAAAACAAACTTTTCACTTGAGAAGTTAGCGAAGTTGTATAT
* * *
50863632 GTCTAAGATTGTGAGACTACATGGGGTTCCAACATCCATTATCTTAGATTGAGATCCTAGGTTTA
130 GTCTAAGATTGTGAGACTACATGGGGTTCCAACATCCATTATCTCAGATTGACATCCGAGGTTTA
*
50863697 CATCGAGGTTTTGGAGTAAATTGCAAAAAGCCCTAGGTACTAAGTTGAATTTCAGCACAGATTTT
195 CATCGAGGTTTTGGAGTAAATTACAAAAAGCCCTAGGTACTAAGTTGAATTTCAGCACAGATTTT
* *
50863762 CATCCTCAGACTGATGGGCAATCAGAACGGGTGATTCAAATTTTAGAAGATATGTTGAGATGTTG
260 CATCCTCAGACTGATGGACAATCAGAACGAGTGATTCAAATTTTAGAAGATATGTTGAGATGTTG
* *
50863827 TATACTCGAGTTTGGAGATAGTTGGGAAAGGTACTTACCATTGGTCGAATTTGC
325 TATACTCGAGTTTGGAGATAGTTGGGAAAGGTACTTACCAGTGGCCGAATTTGC
50863881 TTA
1 TTA
50863884 TAATAATAGT
Statistics
Matches: 359, Mismatches: 20, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
377 310 0.86
378 48 0.13
379 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (378 bp):
TTAGAACTGACTGTGACTCCAAGAAAGAAAGATTCGATCTAGGTGATTGAGGAAAAGATTGACAA
AATCAACACATTTTATTCTGGTCAAAACAAACTTTTCACTTGAGAAGTTAGCGAAGTTGTATATG
TCTAAGATTGTGAGACTACATGGGGTTCCAACATCCATTATCTCAGATTGACATCCGAGGTTTAC
ATCGAGGTTTTGGAGTAAATTACAAAAAGCCCTAGGTACTAAGTTGAATTTCAGCACAGATTTTC
ATCCTCAGACTGATGGACAATCAGAACGAGTGATTCAAATTTTAGAAGATATGTTGAGATGTTGT
ATACTCGAGTTTGGAGATAGTTGGGAAAGGTACTTACCAGTGGCCGAATTTGC
Found at i:50865391 original size:46 final size:48
Alignment explanation
Indices: 50865304--50865474 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 48
50865294 GCCCATAAAC
* ** * *
50865304 GAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCATACATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACATAAGT
* * * *
50865350 GAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAG-TTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACA--TAAGT
* * * *
50865397 GAACACGGACTCAACTCAACGAGTTCGGA--CATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACATAAGT
*
50865443 GAACTCGGAATCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
50865475 TCAACCATCC
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.03
46 59 0.60
47 32 0.32
48 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (48 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCACTAGCATACATAAGT
Found at i:50865461 original size:93 final size:93
Alignment explanation
Indices: 50865302--50865474 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
50865292 CCGCCCATAA
* * * * *
50865302 ACGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATACATGAGTGAACTCAGACTCAACTC
1 ACGAACACGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGAATCAACTC
50865367 AACGAGTTCGGATGCCTAGTTACATCTC
66 AACGAGTTCGGATGCCTAGTTACATCTC
* * * *
50865395 ACGAACACGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGAATCAACTC
1 ACGAACACGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGAATCAACTC
50865460 AACGAGTTCGGATGC
66 AACGAGTTCGGATGC
50865475 TCAACCATCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (93 bp):
ACGAACACGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGAATCAACTC
AACGAGTTCGGATGCCTAGTTACATCTC
Found at i:50868778 original size:11 final size:11
Alignment explanation
Indices: 50868762--50868792 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
50868752 TGTGAACAAA
50868762 AGACCATGGTT
1 AGACCATGGTT
50868773 AGACCATGGTT
1 AGACCATGGTT
50868784 AGACCATGG
1 AGACCATGG
50868793 AAGTACATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (11 bp):
AGACCATGGTT
Found at i:50868856 original size:37 final size:36
Alignment explanation
Indices: 50868809--50868942 Score: 109
Period size: 37 Copynumber: 3.8 Consensus size: 36
50868799 ATGTGTGTAC
* *
50868809 GTGTATGACCATAGTTGGGCTATGGCATCGTAATAAA
1 GTGTAAGACCATAG-TGGGCTATGGCATCGTAATAAT
* * *
50868846 GTGTAAGACCATAGCGAGGCTATGGCATTGTGAT-AT
1 GTGTAAGACCATAGTG-GGCTATGGCATCGTAATAAT
* *
50868882 GTGTAAGA-C-T-GT-GGC-AAGGTCATGGTAATATAT
1 GTGTAAGACCATAGTGGGCTATGG-CATCGTAATA-AT
*
50868915 GTGTAAGACCATAGTTGGGCAATGGCAT
1 GTGTAAGACCATAG-TGGGCTATGGCAT
50868943 TAAGCAAATG
Statistics
Matches: 77, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
30 3 0.04
31 10 0.13
33 11 0.14
34 2 0.03
35 2 0.03
36 11 0.14
37 29 0.38
38 6 0.08
39 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (36 bp):
GTGTAAGACCATAGTGGGCTATGGCATCGTAATAAT
Found at i:50873305 original size:262 final size:262
Alignment explanation
Indices: 50872811--50873335 Score: 962
Period size: 261 Copynumber: 2.0 Consensus size: 262
50872801 TTCATGACCC
*
50872811 TTCCATAACACTTTTTGCATCTTTTGATTTACGGTAATAAGGTGTTGAACAATTTCTTCTTCTGG
1 TTCCATAACACTTTTTGCATCTTTTGATTTACGGTAATAAGGTGTTGAACAATGTCTTCTTCTGG
*
50872876 TTTCATTTTGTAATCTTGCAATTCTGTCATCATCTTATCAACTTTCTCCCTTCATGTTGAAGTTG
66 TTTCATTTTGTAATCTTGCAATTCTCTCATCATCTTATCAACTTTCTCCCTTCATGTTGAAGTTG
* *
50872941 TTATCTGATCAGGCAATATCAGATTTATTGCTATTTCTACCAATATCTATGATAGAAAATAAATT
131 TTATCTCATCAGACAATATCAGATTTATTGCTATTTCTACCAATATCTATGATAGAAAATAAATT
*
50873006 TTTTCTCGATTTTCATTATTTATCTATTTTTCTCTGGTGTCATCACAAACTAATAATTAATTTAT
196 TTTTCTCGATTTTCATTATTCATCTATTTTTCTCTGGTGTCATCACAAACTAATAATTAATTTAT
50873071 AA
261 AA
*
50873073 TTCCATAACACTTTTTGCATCTTTTGATTTACGGTAATAAGGTGTTGAA-AATGTCTTCTTTTGG
1 TTCCATAACACTTTTTGCATCTTTTGATTTACGGTAATAAGGTGTTGAACAATGTCTTCTTCTGG
*
50873137 TTTCATTTTGTAATCTTGCAATTCTCTCATCATCTTATTAACTTTCTCCCTTCATGTTGAAGTTG
66 TTTCATTTTGTAATCTTGCAATTCTCTCATCATCTTATCAACTTTCTCCCTTCATGTTGAAGTTG
50873202 TTATCTCATCAGACAATATCAGATTTATTGCTATTTCTACCAATATCTATGATAGAAAATAAATT
131 TTATCTCATCAGACAATATCAGATTTATTGCTATTTCTACCAATATCTATGATAGAAAATAAA-T
*
50873267 TTTTTCTCGATTTTTATTATTCATCTATTTTTCTCTGGTGTCATCACAAACTAATAATTAATTTA
195 TTTTTCTCGATTTTCATTATTCATCTATTTTTCTCTGGTGTCATCACAAACTAATAATTAATTTA
50873332 TAA
260 TAA
50873335 T
1 T
50873336 AGTTACTAAC
Statistics
Matches: 254, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
261 137 0.54
262 117 0.46
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.46
Consensus pattern (262 bp):
TTCCATAACACTTTTTGCATCTTTTGATTTACGGTAATAAGGTGTTGAACAATGTCTTCTTCTGG
TTTCATTTTGTAATCTTGCAATTCTCTCATCATCTTATCAACTTTCTCCCTTCATGTTGAAGTTG
TTATCTCATCAGACAATATCAGATTTATTGCTATTTCTACCAATATCTATGATAGAAAATAAATT
TTTTCTCGATTTTCATTATTCATCTATTTTTCTCTGGTGTCATCACAAACTAATAATTAATTTAT
AA
Found at i:50873527 original size:107 final size:107
Alignment explanation
Indices: 50873338--50873534 Score: 290
Period size: 106 Copynumber: 1.8 Consensus size: 107
50873328 TTTATAATAG
* * * *
50873338 TTACTAACAAAATAACGTTCAAATAAATTAAAAAATATTAAAGATTACATTCATAACCTAACAAA
1 TTACTAACAAAATAACGTTAAAAGAAATTAAAAAATAATAAAAATTACATTCATAACCTAACAAA
50873403 TCACAATAAATCCTAAAC-AAACAATTAACCTAATCACAAAC
66 TCACAATAAATCCTAAACTAAACAATTAACCTAATCACAAAC
* * *
50873444 TTACTAACAAAATAACTTTAAAAGAAATTAAAAATTAATAAAAATTAATATTCATAACCTAACAA
1 TTACTAACAAAATAACGTTAAAAGAAATTAAAAAATAATAAAAATT-ACATTCATAACCTAACAA
*
50873509 ATCACAATAAA-CATTAAACTAAACAA
65 ATCACAATAAATC-CTAAACTAAACAA
50873535 ATAATTTGTA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
106 41 0.51
107 33 0.41
108 6 0.08
ACGTcount: A:0.57, C:0.16, G:0.02, T:0.25
Consensus pattern (107 bp):
TTACTAACAAAATAACGTTAAAAGAAATTAAAAAATAATAAAAATTACATTCATAACCTAACAAA
TCACAATAAATCCTAAACTAAACAATTAACCTAATCACAAAC
Found at i:50873696 original size:26 final size:26
Alignment explanation
Indices: 50873667--50873716 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
50873657 AAAAAAAATA
50873667 TCTTATCCTTC-TGTTTTCTTCTCCTT
1 TCTT-TCCTTCTTGTTTTCTTCTCCTT
* *
50873693 TCTTTCTTTCTTTTTTTCTTCTCC
1 TCTTTCCTTCTTGTTTTCTTCTCC
50873717 ATCGCTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.02, C:0.30, G:0.02, T:0.66
Consensus pattern (26 bp):
TCTTTCCTTCTTGTTTTCTTCTCCTT
Found at i:50873955 original size:22 final size:22
Alignment explanation
Indices: 50873930--50873976 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
50873920 TGGTACCACT
*
50873930 AAAT-AAAATAATATTTTTTAAA
1 AAATAAAAATAA-ATTTATTAAA
50873952 AAATAAAAATAAATTTATTAAA
1 AAATAAAAATAAATTTATTAAA
50873974 AAA
1 AAA
50873977 AATGGTAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATAAAAATAAATTTATTAAA
Found at i:50873975 original size:23 final size:22
Alignment explanation
Indices: 50873930--50873977 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
50873920 TGGTACCACT
*
50873930 AAATAAAATAATATTTTTTAAA
1 AAATAAAATAATATTTTTAAAA
50873952 AAATAAAAATAA-ATTTATTAAAA
1 AAAT-AAAATAATATTT-TTAAAA
50873975 AAA
1 AAA
50873978 ATGGTAGTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATAAAATAATATTTTTAAAA
Found at i:50876673 original size:14 final size:16
Alignment explanation
Indices: 50876650--50876688 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
50876640 AAGAAAATGA
*
50876650 TGATACATGAAA-A-G
1 TGATATATGAAATATG
50876664 TGATATATGAAATATG
1 TGATATATGAAATATG
50876680 TGATATATG
1 TGATATATG
50876689 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.33
Consensus pattern (16 bp):
TGATATATGAAATATG
Found at i:50877072 original size:49 final size:49
Alignment explanation
Indices: 50877000--50877183 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 49
50876990 GTCACGTGTC
*
50877000 TAGTACTAAATGCAGGCTACTATGTGAACCAGATAATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTATGTGAACCAGATAATTGGTCGCATGTG
* * * * * *
50877049 TAGTACTAAGTGCAGGCTACTATG-CATACCCGAAAACTGTGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTATGTGA-ACCAGATAA-T-TGGTCGCATGTG
* * * * *
50877100 TAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCATATG
1 TAGTACTAAGTGCAGGCTACTATGTGAACCAGATAATTGGTCGCATGTG
* *
50877149 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGTACTAAGTGCAGGCTACTATGTGAACCAGATA
50877184 GCTTCGGCTA
Statistics
Matches: 109, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 1 0.01
49 69 0.63
50 2 0.02
51 37 0.34
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (49 bp):
TAGTACTAAGTGCAGGCTACTATGTGAACCAGATAATTGGTCGCATGTG
Found at i:50877164 original size:100 final size:100
Alignment explanation
Indices: 50876991--50877178 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
50876981 TATTGTGAGG
* *
50876991 TCACGTGTCTAGTACTAAATGCAGGCTACTATGTGAACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTCTAGTACTAAATGCAGGCTACTACGTGAACCAGATAATTGGTCGCATATGTAGTACT
50877056 AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
* * * * *
50877091 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCATATGTAGTACT
1 TCACGTGTCTAGTACTAAATGCAGGCTACTACGTGAACCAGATAATTGGTCGCATATGTAGTACT
*
50877156 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCATACC
50877179 AGATAGCTTC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACGTGTCTAGTACTAAATGCAGGCTACTACGTGAACCAGATAATTGGTCGCATATGTAGTACT
AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
Found at i:50882301 original size:49 final size:49
Alignment explanation
Indices: 50882229--50882416 Score: 243
Period size: 49 Copynumber: 3.8 Consensus size: 49
50882219 TGAGGTAACG
* * *
50882229 TGTGTCGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * * * * *
50882278 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCGCA
*
50882329 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
*
50882378 TGTGTAGTACTAAGTGCAGGCTACAATGCT-TACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATG-TGTACCAGATA
50882417 GCTTCGGCTA
Statistics
Matches: 119, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
49 75 0.63
50 3 0.03
51 41 0.34
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:50882399 original size:100 final size:100
Alignment explanation
Indices: 50882226--50882411 Score: 318
Period size: 100 Copynumber: 1.9 Consensus size: 100
50882216 TTGTGAGGTA
* *
50882226 ACGTGTGTCGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAA
*
50882291 GTGCAGGCTACTATGCGTACCCGAAAACTGTGATC
66 GTGCAGGCTACAATGCGTACCCGAAAACTGTGATC
* *
50882326 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAA
*
50882391 GTGCAGGCTACAATGCTTACC
66 GTGCAGGCTACAATGCGTACC
50882412 AGATAGCTTC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (100 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAA
GTGCAGGCTACAATGCGTACCCGAAAACTGTGATC
Found at i:50885188 original size:27 final size:27
Alignment explanation
Indices: 50885158--50885443 Score: 374
Period size: 27 Copynumber: 10.6 Consensus size: 27
50885148 TGTAAGGTAG
*
50885158 AATTATCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * * *
50885185 AATTACTAGAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
50885212 AATCACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* **
50885239 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
50885266 AATTACCAAAATACCTCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * * *
50885293 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
50885320 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
50885347 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
50885374 AATTATCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * *
50885401 AATTACCAAAATACCCCTGATTTTTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
50885428 AATTACTAAAATACCC
1 AATTACCAAAATACCC
50885444 TCGACCTGTA
Statistics
Matches: 220, Mismatches: 39, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 220 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:50885250 original size:81 final size:81
Alignment explanation
Indices: 50885158--50885500 Score: 393
Period size: 81 Copynumber: 4.2 Consensus size: 81
50885148 TGTAAGGTAG
* * * * *
50885158 AATTATCAAAATACCCCTGGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATCACCAAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
50885223 TACCCCTAGTTTGTAA
66 TACCCCTAGTTTGTAA
* ** *
50885239 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCTCTGGTTTGTAAAATTACTAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-TGGTTTGTAAAATTACCAAA
* * *
50885303 ATACCCTTTGTTTATAA
65 ATACCCCTAGTTTGTAA
* * *
50885320 AATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
50885385 TACCCCTAGTTTGTAA
66 TACCCCTAGTTTGTAA
* * * * * *** ***
50885401 AATTACCAAAATACCCCTGATTTTTGAAATTACTAAAATACCCTCGACCTGTAAAATTATTGAAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
**
50885466 TA-CCCTCAACTTGTAA
66 TACCCCT-AGTTTGTAA
*
50885482 AATTACCAAAGTACCCCTG
1 AATTACCAAAATACCCCTG
50885501 ATTTACAGAA
Statistics
Matches: 222, Mismatches: 37, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
80 7 0.03
81 213 0.96
82 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
TACCCCTAGTTTGTAA
Found at i:50885457 original size:27 final size:27
Alignment explanation
Indices: 50885158--50885552 Score: 277
Period size: 27 Copynumber: 14.6 Consensus size: 27
50885148 TGTAAGGTAG
* *
50885158 AATTATCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTGTAA
* * * * *
50885185 AATTACTAGAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCGATTTGTAA
* *
50885212 AATCACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
* * **
50885239 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
50885266 AATTACCAAAATA-CCTCTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTGTAA
* * *
50885293 AATTACTAAAATACCCTTTG-TTTATAA
1 AATTACCAAAATACCC-TCGATTTGTAA
*
50885320 AATTACCAAAATACCACT-GGTTTGTAA
1 AATTACCAAAATACC-CTCGATTTGTAA
*
50885347 AATTACCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTGTAA
* *
50885374 AATTATCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
* *
50885401 AATTACCAAAATACCC-CTGATTTTTGA
1 AATTACCAAAATACCCTC-GATTTGTAA
* **
50885428 AATTACTAAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
*** * *
50885455 AATTATTGAAATACCCTCAACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
* ** *
50885482 AATTACCAAAGTACCC-CTGATTTACAG
1 AATTACCAAAATACCCTC-GATTTGTAA
*** **
50885509 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
50885536 AATTACCGAAATACCCT
1 AATTACCAAAATACCCT
50885553 TGTAGGGTAG
Statistics
Matches: 294, Mismatches: 59, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
26 6 0.02
27 280 0.95
28 7 0.02
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:50885574 original size:27 final size:27
Alignment explanation
Indices: 50885544--50885701 Score: 210
Period size: 27 Copynumber: 5.9 Consensus size: 27
50885534 AAAATTACCG
* * *
50885544 AAATACCCTTGTAGGGTAGAAATACTT
1 AAATACCCCTGTAGGGTAGAATTACTA
*
50885571 AAATACCCCTGTAGAGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
* **
50885598 AAATACCCATGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTA
* **
50885625 AAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACTA
*
50885652 AAATA-CCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTA
50885678 AAATACCCCTGTAGGGTAGAATTA
1 AAATACCCCTGTAGGGTAGAATTA
50885702 TCGAGATACC
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 22 0.19
27 93 0.81
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTA
Found at i:50885594 original size:54 final size:54
Alignment explanation
Indices: 50885536--50885729 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 54
50885526 CGATTTACAA
* * *
50885536 AATTACCGAAATACCCTTGTAGGGTAGAAATACTTAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
** * **
50885590 AATTACTAAAATACCCATGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
* *
50885644 AAATACCGAAATACCC-TATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
* * ** *
50885697 AATTATCGAGATACCCTTGCGGGGTAAAATTAC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTAC
50885730 CATTTTGCCC
Statistics
Matches: 119, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
53 47 0.39
54 72 0.61
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
Found at i:50885710 original size:27 final size:26
Alignment explanation
Indices: 50885536--50885712 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 26
50885526 CGATTTACAA
*
50885536 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* * *
50885563 AAATACTTAAATACCCCTGTAGAGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* *
50885590 AATTACTAAAATACCCATGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
50885617 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* *
50885644 AAATACCGAAATA-CCCTATAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
50885670 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
50885697 AATTATCGAGATACCC
1 AATTA-CGAAATACCC
50885713 TTGCGGGGTA
Statistics
Matches: 128, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.01
26 22 0.17
27 103 0.80
28 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (26 bp):
AATTACGAAATACCCCTGTAGGGTAG
Found at i:50885722 original size:80 final size:81
Alignment explanation
Indices: 50885536--50885715 Score: 281
Period size: 80 Copynumber: 2.2 Consensus size: 81
50885526 CGATTTACAA
** *
50885536 AATTACCGAAATACCCTTGTAGGGTAGAAATACTTAAATACCCCTGTAGAGTAGAATTACTAAAA
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGAGTAGAATTACTAAAA
50885601 TACCCATGTAGGGTAG
66 TACCCATGTAGGGTAG
* *
50885617 AATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATA-CCCTATAGGGTAGAATTACTAAAA
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGAGTAGAATTACTAAAA
*
50885681 TACCCCTGTAGGGTAG
66 TACCCATGTAGGGTAG
* *
50885697 AATTATCGAGATACCCTTG
1 AATTACCGAAATACCCTTG
50885716 CGGGGTAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 53 0.59
81 37 0.41
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGAGTAGAATTACTAAAA
TACCCATGTAGGGTAG
Found at i:50886163 original size:6 final size:6
Alignment explanation
Indices: 50886132--50886219 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
50886122 TTGCATTCAC
* *
50886132 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
50886181 -TCACGTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
50886220 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 55 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:50886170 original size:31 final size:31
Alignment explanation
Indices: 50886132--50886210 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
50886122 TTGCATTCAC
* *
50886132 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
50886163 ATTCTGATTCTGATTCTGTCACGTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
50886194 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
50886211 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:50894010 original size:39 final size:40
Alignment explanation
Indices: 50893967--50894189 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
50893957 GCTCCTCGTT
* *
50893967 CAAATGCCTTCGGGACATAGCCCGGTTATAGTA-ATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATATCGCA
* *
50894006 CAAATGCCTTCGGGACTTAACCCGGATTTAGTA-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATA-TCGCA
*
50894046 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTATATCGCA
* *
50894085 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTATATCGCA
* * *
50894124 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACT-TAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TATCGCA
50894165 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50894190 CATCATTCAA
Statistics
Matches: 163, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 2 0.01
39 100 0.61
40 48 0.29
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATATCGCA
Found at i:50894085 original size:79 final size:77
Alignment explanation
Indices: 50893967--50894189 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 77
50893957 GCTCCTCGTT
* * * *
50893967 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
50894032 TTTAGTAACTCGCA
65 -TTAGTAACTCGCA
*
50894046 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTA-CTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
50894109 GATTAGTATCTCGCA
63 GATTAGTAACTCGCA
* * * *
50894124 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
50894188 GA
63 GA
50894190 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 42 0.34
79 69 0.55
80 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TAGTAACTCGCA
Found at i:50894149 original size:118 final size:119
Alignment explanation
Indices: 50893967--50894189 Score: 285
Period size: 118 Copynumber: 1.9 Consensus size: 119
50893957 GCTCCTCGTT
*
50893967 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
50894032 TTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 TATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
50894085 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTA-ATCGCACAAATGCCTTCGGGA-CTTAACCC
* *
50894147 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
50894190 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
117 11 0.12
118 60 0.67
119 19 0.21
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:50902021 original size:79 final size:80
Alignment explanation
Indices: 50901893--50902077 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 80
50901883 GCTCCTCGTT
* *
50901893 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAG-AATTCGCACAAATGCCTTC-GGATCTTAACCC
50901956 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
**
50901973 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAG-ATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGAAT-TCGCACAAATGCCTTCGGATCTTAACCCG
*
50902036 GATTTAGTATCTCGCA
65 GATTTAGTAACTCGCA
*
50902052 CAAATGCCTTC-GGATCTTAGTCCGGA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA
50902078 TATGGTCACT
Statistics
Matches: 95, Mismatches: 6, Indels: 9
0.86 0.05 0.08
Matches are distributed among these distances:
78 8 0.08
79 59 0.62
80 27 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGAATTCGCACAAATGCCTTCGGATCTTAACCCGG
ATTTAGTAACTCGCA
Found at i:50902077 original size:119 final size:119
Alignment explanation
Indices: 50901893--50902117 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 119
50901883 GCTCCTCGTT
50901893 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
50901958 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGATCTCGCA
* * **
50902012 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* *
50902073 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
50902118 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
118 8 0.09
119 75 0.81
120 10 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGATCTCGCA
Found at i:50902117 original size:40 final size:40
Alignment explanation
Indices: 50901893--50902117 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
50901883 GCTCCTCGTT
* *
50901893 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
* * *
50901933 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
50901973 CAAATGCCTTCGGGACTTAGCCCGGA-AT--TAGATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTA-AT-TCGCA
* *
50902012 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAT-TCGCA
* * * *
50902052 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-AATTCGCA
50902093 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50902118 CATCATTCAA
Statistics
Matches: 161, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
37 2 0.01
38 4 0.02
39 27 0.17
40 115 0.71
41 11 0.07
42 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
Found at i:50911257 original size:17 final size:17
Alignment explanation
Indices: 50911231--50911279 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
50911221 GTTAGTGCAC
50911231 ATTGTCATTGCATTTCT
1 ATTGTCATTGCATTTCT
*
50911248 ATTTTCATTGCATTTCT
1 ATTGTCATTGCATTTCT
50911265 ATTGTCATTGCATTT
1 ATTGTCATTGCATTT
50911280 TAATTTTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.18, C:0.16, G:0.10, T:0.55
Consensus pattern (17 bp):
ATTGTCATTGCATTTCT
Found at i:50911286 original size:34 final size:33
Alignment explanation
Indices: 50911231--50911294 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
50911221 GTTAGTGCAC
*
50911231 ATTGTCATTGCATTTCTATTTTCATTGCATTTCT
1 ATTGTCATTGCATTTCTATTTT-AGTGCATTTCT
50911265 ATTGTCATTGCATTT-TAATTTTAGTGCATT
1 ATTGTCATTGCATTTCT-ATTTTAGTGCATT
50911295 GAAGACAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 8 0.29
34 20 0.71
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (33 bp):
ATTGTCATTGCATTTCTATTTTAGTGCATTTCT
Found at i:50917029 original size:14 final size:13
Alignment explanation
Indices: 50917003--50917046 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
50916993 AAGAAAAAGC
50917003 AAAAAGGAAGAAA
1 AAAAAGGAAGAAA
*
50917016 AAAAATGGAGGAAA
1 AAAAA-GGAAGAAA
*
50917030 AAGAGAGGAAGAAA
1 AA-AAAGGAAGAAA
50917044 AAA
1 AAA
50917047 TCGGTACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 6 0.23
14 18 0.69
15 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.02
Consensus pattern (13 bp):
AAAAAGGAAGAAA
Found at i:50919429 original size:28 final size:27
Alignment explanation
Indices: 50919389--50919460 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 27
50919379 GATGTCTCGT
50919389 ACACTAAGTGCCATACTCAATATCTTTC
1 ACACTAAGTGCCATA-TCAATATCTTTC
* * *
50919417 ACACCAAGTGCCATTATTAATATTTTTC
1 ACACTAAGTGCCA-TATCAATATCTTTC
*
50919445 ACACTAAGTTCCATAT
1 ACACTAAGTGCCATAT
50919461 ACATATATAG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 3 0.08
28 33 0.87
29 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (27 bp):
ACACTAAGTGCCATATCAATATCTTTC
Found at i:50919513 original size:40 final size:40
Alignment explanation
Indices: 50919468--50919543 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
50919458 TATACATATA
50919468 TAGCCGAAGCTATCTCCAATCACACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCCAATCACACACCAAGTGCCACATT
* ** * *
50919508 TAGCCGAAGCTATTTTGAATCGCACACTAAGTGCCA
1 TAGCCGAAGCTATCTCCAATCACACACCAAGTGCCA
50919544 TTTTTTTAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCCAATCACACACCAAGTGCCACATT
Found at i:50930975 original size:26 final size:27
Alignment explanation
Indices: 50930910--50930977 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
50930900 CTACTTTGTT
* *
50930910 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAAATGAACATGAC
* * *
50930937 GCACTAAGAGTGCGAATTGACCAT-AC
1 GCACTAAGTGTGCGAAATGAACATGAC
*
50930963 GGACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
50930978 GTCTAACTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 14 0.41
27 20 0.59
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (27 bp):
GCACTAAGTGTGCGAAATGAACATGAC
Found at i:50931046 original size:26 final size:26
Alignment explanation
Indices: 50930989--50931056 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
50930979 TCTAACTATG
* *
50930989 TAGCACTAAGTGTGCGATTGATTACG
1 TAGCACTAAGTGTGCGAGTGATTACA
* * *
50931015 TGGCACTAAATGTGCGAGTGATTATA
1 TAGCACTAAGTGTGCGAGTGATTACA
*
50931041 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
50931057 GGCTCAATAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGCACTAAGTGTGCGAGTGATTACA
Found at i:50937143 original size:27 final size:27
Alignment explanation
Indices: 50936976--50937153 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
50936966 TAAATTGTAC
*
50936976 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
50937003 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
50937029 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
50937057 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
50937085 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
50937112 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
50937139 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50937154 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Done.