Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 158 of 290
Found at i:50937144 original size:82 final size:81
Alignment explanation
Indices: 50936973--50937153 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
50936963 GATTAAATTG
* * * *
50936973 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50937038 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
50937054 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50937118 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
50937136 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50937154 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:50949115 original size:19 final size:19
Alignment explanation
Indices: 50949074--50949116 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
50949064 CTGAATTAAG
*
50949074 AACTATTAATTTTCCCGAG
1 AACTATTAATTTTCCCGAA
* *
50949093 AACTATTAATTTTCTCTAA
1 AACTATTAATTTTCCCGAA
50949112 AACTA
1 AACTA
50949117 AACTCACATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.40
Consensus pattern (19 bp):
AACTATTAATTTTCCCGAA
Found at i:50960683 original size:20 final size:16
Alignment explanation
Indices: 50960642--50960678 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
50960632 TCTGAATTAC
50960642 CAGTCCAGCCTAAATT
1 CAGTCCAGCCTAAATT
50960658 CAGTCCAGCCTAAATT
1 CAGTCCAGCCTAAATT
50960674 CAGTC
1 CAGTC
50960679 AGTCCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (16 bp):
CAGTCCAGCCTAAATT
Found at i:50963030 original size:20 final size:21
Alignment explanation
Indices: 50963007--50963045 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
50962997 CATATCATAT
50963007 AAATAAC-ATTAAGTTACTTA
1 AAATAACAATTAAGTTACTTA
* *
50963027 AAATGACAATTATGTTACT
1 AAATAACAATTAAGTTACT
50963046 ACATTTACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (21 bp):
AAATAACAATTAAGTTACTTA
Found at i:50963258 original size:30 final size:30
Alignment explanation
Indices: 50963210--50963268 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
50963200 TCATTGACTC
50963210 AAACTTTTAAAAAATTACA-TTTTTGCCCCT
1 AAACTTTTAAAAAATTACACTTTTT-CCCCT
* * *
50963240 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTTAAAAAATTACACTTTTTCCCC
50963269 AAGGCTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.42
Consensus pattern (30 bp):
AAACTTTTAAAAAATTACACTTTTTCCCCT
Found at i:50965861 original size:50 final size:50
Alignment explanation
Indices: 50965785--50965913 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 50
50965775 GCATAGTTGG
* * *
50965785 CTGCACTTAGTACTACACATGCGACCTAACAATCTAG-TACATGTAGCAGC
1 CTGCACTTAGTACTACACACGTGACCTAACAATC-AGATACACGTAGCAGC
* *
50965835 CTGCACTTAGTACTACACACGTGACCTAACCATCAGATACACGTAGTAGC
1 CTGCACTTAGTACTACACACGTGACCTAACAATCAGATACACGTAGCAGC
50965885 CTGCACTTAGTACTACACACGTGACCTAA
1 CTGCACTTAGTACTACACACGTGACCTAA
50965914 AACTATTTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
49 2 0.03
50 71 0.97
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (50 bp):
CTGCACTTAGTACTACACACGTGACCTAACAATCAGATACACGTAGCAGC
Found at i:50978888 original size:27 final size:27
Alignment explanation
Indices: 50978858--50978911 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
50978848 TGTCATGTGA
* *
50978858 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
50978885 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
50978912 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:50982815 original size:50 final size:50
Alignment explanation
Indices: 50982733--50982969 Score: 262
Period size: 50 Copynumber: 4.7 Consensus size: 50
50982723 ACTGAAGCTC
* * * *
50982733 TCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * *
50982783 TCTGGTAAACGTAGTAGCCTGCACTAAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
* * * * * *
50982833 TC-GGATACATGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGG-TACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CAA
* * * * *
50982884 TCAGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
50982934 TCTGGTACACGTAAG-AGCCTGCACTTAGTACTACAC
1 TCTGGTACACGT-AGTAGCCTGCACTTAGTACTACAC
50982970 TTGACCTAAA
Statistics
Matches: 154, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.01
50 111 0.72
51 39 0.25
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAA
Found at i:50991681 original size:26 final size:26
Alignment explanation
Indices: 50991651--50991700 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
50991641 AAATATAATT
50991651 TTATATTTTACTATTTAATTTAATCA
1 TTATATTTTACTATTTAATTTAATCA
*
50991677 TTATATTTTATTATTTAATTTAAT
1 TTATATTTTACTATTTAATTTAAT
50991701 TATGCATGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATATTTTACTATTTAATTTAATCA
Found at i:50991697 original size:13 final size:14
Alignment explanation
Indices: 50991650--50991703 Score: 51
Period size: 13 Copynumber: 4.1 Consensus size: 14
50991640 AAAATATAAT
* *
50991650 TTTATATTTTACTA
1 TTTATATTTAATTA
*
50991664 TTTA-ATTTAATCA
1 TTTATATTTAATTA
*
50991677 -TTATATTTTATTA
1 TTTATATTTAATTA
50991690 TTTA-ATTTAATTA
1 TTTATATTTAATTA
50991703 T
1 T
50991704 GCATGGCCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
12 3 0.09
13 22 0.69
14 7 0.22
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTATATTTAATTA
Found at i:51017169 original size:32 final size:32
Alignment explanation
Indices: 51017128--51017225 Score: 108
Period size: 34 Copynumber: 2.9 Consensus size: 32
51017118 GTATGTATTT
* *
51017128 CTGATACTGTACTGAAATTGGCTAAGCCCATA
1 CTGATACTGTACTGATATTGGCTAAGCCCACA
*
51017160 CTGATACTGTTACTG-TATTGGGCCAAGGCCCACA
1 CTGATACTG-TACTGATATT-GGCTAA-GCCCACA
*
51017194 CTGATACTGTGACTGATATGGGCTTAAGCCCA
1 CTGATACTGT-ACTGATATTGGC-TAAGCCCA
51017226 GATTGTTCAA
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
32 12 0.22
33 11 0.20
34 27 0.49
35 5 0.09
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (32 bp):
CTGATACTGTACTGATATTGGCTAAGCCCACA
Found at i:51024808 original size:82 final size:81
Alignment explanation
Indices: 51024695--51024850 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
51024685 AAATTGTACA
* * * * *
51024695 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTACGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
51024759 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51024776 GCACTAAGTGTACGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTACGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
51024841 TGCGAGTTGA
65 TGCGAATTGA
51024851 TTGTATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTACGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51024852 original size:27 final size:27
Alignment explanation
Indices: 51024695--51024850 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
51024685 AAATTGTACA
*
51024695 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
51024722 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
51024749 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
51024776 GCACTAAGTGTACGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
51024804 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
51024831 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
51024851 TTGTATAGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
27 82 0.77
28 24 0.23
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:51024861 original size:27 final size:27
Alignment explanation
Indices: 51024687--51024871 Score: 92
Period size: 27 Copynumber: 6.8 Consensus size: 27
51024677 GCGGGATTAA
*
51024687 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
51024714 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
51024741 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * * *
51024768 ACCATGCGGCACTAAGTGTACGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
51024796 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
51024823 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
51024850 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
51024872 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 26, Indels: 16
0.75 0.16 0.10
Matches are distributed among these distances:
26 1 0.01
27 95 0.77
28 25 0.20
29 3 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:51024862 original size:82 final size:81
Alignment explanation
Indices: 51024687--51024868 Score: 195
Period size: 82 Copynumber: 2.2 Consensus size: 81
51024677 GCGGGATTAA
* * * * *
51024687 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTACGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
51024752 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
51024768 ACCATGCGGCACTAAGTGTACGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTACGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
51024832 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
51024850 ATTGTATAGCACTGAGTGT
1 ATTGTACAGCACTAAGTGT
51024869 GCGGGCTCAA
Statistics
Matches: 78, Mismatches: 21, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
81 20 0.26
82 58 0.74
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTACGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:51032779 original size:27 final size:26
Alignment explanation
Indices: 51032749--51032924 Score: 151
Period size: 27 Copynumber: 6.5 Consensus size: 26
51032739 AAATTGTACA
51032749 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
51032776 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
51032803 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
51032830 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* *
51032858 GCACTAAGTGTGCGATTTGATTACG-T
1 GCACTAAGTGTGCGA-TTGACTATGTT
51032884 GCACTAAGTGTGCGAGTTGA-T-TGTAT
1 GCACTAAGTGTGCGA-TTGACTATGT-T
*
51032910 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
51032925 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.01
25 1 0.01
26 21 0.17
27 76 0.62
28 24 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:51032889 original size:81 final size:81
Alignment explanation
Indices: 51032749--51032903 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
51032739 AAATTGTACA
* * * *
51032749 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
51032814 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
51032830 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
51032894 TGCGAGTTGA
65 TGCGAATTGA
51032904 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
81 37 0.57
82 28 0.43
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51032915 original size:81 final size:81
Alignment explanation
Indices: 51032741--51032924 Score: 217
Period size: 81 Copynumber: 2.3 Consensus size: 81
51032731 GCGGGATTAA
* * * *
51032741 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
51032806 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
51032822 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGC
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGATGC
*
51032886 ACTAAGTGTGCGAGTTG
65 ACTAAGTGTGCGAATTG
* *
51032903 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
51032925 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 54 0.66
82 28 0.34
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:51040481 original size:21 final size:21
Alignment explanation
Indices: 51040432--51040472 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
51040422 TTAGTTTTAT
*
51040432 ATTTTATTTTACCGTATTTTG
1 ATTTTATTTTACCGTATTGTG
51040453 ATTTTATTTTACCGTATTGT
1 ATTTTATTTTACCGTATTGT
51040473 CTTCTTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.61
Consensus pattern (21 bp):
ATTTTATTTTACCGTATTGTG
Found at i:51044127 original size:46 final size:46
Alignment explanation
Indices: 51044074--51044246 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
51044064 TTGGGCATCT
51044074 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
51044120 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * ***
51044167 AAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACACCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
51044213 GAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51044247 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:51053880 original size:47 final size:47
Alignment explanation
Indices: 51053768--51054243 Score: 772
Period size: 47 Copynumber: 10.1 Consensus size: 47
51053758 GAAATGATAG
*
51053768 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
51053817 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51053864 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51053911 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51053958 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
51054005 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51054052 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51054099 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51054146 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * * *
51054193 CGAGGCCGAGTGGCCAACGTGATGATTGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51054240 TAAG
1 TAAG
51054244 TCCCGAAGGG
Statistics
Matches: 406, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
47 370 0.91
49 36 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51054419 original size:38 final size:37
Alignment explanation
Indices: 51054362--51054441 Score: 108
Period size: 38 Copynumber: 2.1 Consensus size: 37
51054352 CTGAGCTCTA
* *
51054362 AAGACCCGATGACTACGTGTGG-GAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-A-TTATGTCCGGGT
*
51054400 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51054437 AAGAC
1 AAGAC
51054442 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 16 0.42
38 21 0.55
39 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51054441 original size:37 final size:38
Alignment explanation
Indices: 51054362--51054441 Score: 110
Period size: 37 Copynumber: 2.1 Consensus size: 38
51054352 CTGAGCTCTA
* *
51054362 AAGACCCGATGACTACGTGTGGGAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGAATTTATGTCCGGGT
*
51054400 AAGACCCGATAACTTCGTGT-GGAGA-TTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTTATGTCCGGGT
51054437 AAGAC
1 AAGAC
51054442 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 19 0.50
38 19 0.50
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (38 bp):
AAGACCCGATAACTACGTGTGGGAATTTATGTCCGGGT
Found at i:51067450 original size:15 final size:16
Alignment explanation
Indices: 51067430--51067459 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51067420 ATGTTCAATT
51067430 GGAAAT-CATTATGTA
1 GGAAATGCATTATGTA
51067445 GGAAATGCATTATGT
1 GGAAATGCATTATGT
51067460 GATCTAGGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (16 bp):
GGAAATGCATTATGTA
Found at i:51070780 original size:68 final size:67
Alignment explanation
Indices: 51070708--51070857 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
51070698 CATCATGTGT
* * * *
51070708 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
51070770 ATGTAG
62 ATGTAG
** * *
51070776 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
51070841 AG
66 AG
51070843 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
51070858 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:51070813 original size:64 final size:64
Alignment explanation
Indices: 51070732--51070915 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
51070722 AGACATTATG
* *
51070732 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
51070796 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
51070861 AA
63 AA
* * * *
51070863 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
51070916 CAAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51078895 original size:28 final size:28
Alignment explanation
Indices: 51078827--51078908 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
51078817 GTCACGATAT
*
51078827 ACAGATA-TTGTGGCAGAGCCACCAG-A
1 ACAGATATTTGTGGCATAGCCACCAGAA
*
51078853 ATAGATATTTGTGGCATAGCCACCAGAA
1 ACAGATATTTGTGGCATAGCCACCAGAA
51078881 ACAGATATTTGTGGCATAGCCACCAGAA
1 ACAGATATTTGTGGCATAGCCACCAGAA
51078909 TGCTTCCTCC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
26 6 0.12
27 17 0.33
28 28 0.55
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (28 bp):
ACAGATATTTGTGGCATAGCCACCAGAA
Found at i:51080514 original size:30 final size:30
Alignment explanation
Indices: 51080480--51080541 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
51080470 ATGTAGCAAA
*
51080480 AAGAGAGTCCTTCGCATGCACAGCAGCTCG
1 AAGAGAGTCCTTCGCACGCACAGCAGCTCG
* *
51080510 AAGAGAGTCCTTCGTACGCACAGCTGCTCG
1 AAGAGAGTCCTTCGCACGCACAGCAGCTCG
51080540 AA
1 AA
51080542 CCTGGGTCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.18
Consensus pattern (30 bp):
AAGAGAGTCCTTCGCACGCACAGCAGCTCG
Found at i:51082980 original size:27 final size:26
Alignment explanation
Indices: 51082911--51083025 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 26
51082901 AGCATGGCTG
* *
51082911 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
51082937 CAAAATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
51082964 CCAGAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* * *
51082991 -CTGAAACAGATATTTGTGGTATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
51083018 CCAGAACA
1 CCAGAACA
51083026 TTTCCTCCAT
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 11 0.15
27 60 0.82
28 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:51084495 original size:298 final size:298
Alignment explanation
Indices: 51083959--51084558 Score: 1200
Period size: 298 Copynumber: 2.0 Consensus size: 298
51083949 CTTAGTGTAG
51083959 AAAAGTTTCAATTTAAAAGAAAGGATGAGAGGTACGGCTTCAATGGAGATTCGGCTTTAACGAAA
1 AAAAGTTTCAATTTAAAAGAAAGGATGAGAGGTACGGCTTCAATGGAGATTCGGCTTTAACGAAA
51084024 AGATGAGTAAAAGTAAAAGAGATCAGCACAAGGGGAAAACAAAAGTTGCGGTTTCGGATTTGTGA
66 AGATGAGTAAAAGTAAAAGAGATCAGCACAAGGGGAAAACAAAAGTTGCGGTTTCGGATTTGTGA
51084089 GTGATCGGCTAAGGTGATTTAATGGGAGAGGTTTTTTCTTTAAGATTGGTGAAGTATAGAAGATG
131 GTGATCGGCTAAGGTGATTTAATGGGAGAGGTTTTTTCTTTAAGATTGGTGAAGTATAGAAGATG
51084154 GGAAGATGACGATAAAAGAAAGGAGAGGAATGGGTTAATGGCCTCGACTTGAAGAACTAAGAGAG
196 GGAAGATGACGATAAAAGAAAGGAGAGGAATGGGTTAATGGCCTCGACTTGAAGAACTAAGAGAG
51084219 TGAGAGAATGAAAGAAGAGAAAATGAGCAAAAAGAACA
261 TGAGAGAATGAAAGAAGAGAAAATGAGCAAAAAGAACA
51084257 AAAAGTTTCAATTTAAAAGAAAGGATGAGAGGTACGGCTTCAATGGAGATTCGGCTTTAACGAAA
1 AAAAGTTTCAATTTAAAAGAAAGGATGAGAGGTACGGCTTCAATGGAGATTCGGCTTTAACGAAA
51084322 AGATGAGTAAAAGTAAAAGAGATCAGCACAAGGGGAAAACAAAAGTTGCGGTTTCGGATTTGTGA
66 AGATGAGTAAAAGTAAAAGAGATCAGCACAAGGGGAAAACAAAAGTTGCGGTTTCGGATTTGTGA
51084387 GTGATCGGCTAAGGTGATTTAATGGGAGAGGTTTTTTCTTTAAGATTGGTGAAGTATAGAAGATG
131 GTGATCGGCTAAGGTGATTTAATGGGAGAGGTTTTTTCTTTAAGATTGGTGAAGTATAGAAGATG
51084452 GGAAGATGACGATAAAAGAAAGGAGAGGAATGGGTTAATGGCCTCGACTTGAAGAACTAAGAGAG
196 GGAAGATGACGATAAAAGAAAGGAGAGGAATGGGTTAATGGCCTCGACTTGAAGAACTAAGAGAG
51084517 TGAGAGAATGAAAGAAGAGAAAATGAGCAAAAAGAACA
261 TGAGAGAATGAAAGAAGAGAAAATGAGCAAAAAGAACA
51084555 AAAA
1 AAAA
51084559 TATAAATTTG
Statistics
Matches: 302, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
298 302 1.00
ACGTcount: A:0.41, C:0.08, G:0.29, T:0.22
Consensus pattern (298 bp):
AAAAGTTTCAATTTAAAAGAAAGGATGAGAGGTACGGCTTCAATGGAGATTCGGCTTTAACGAAA
AGATGAGTAAAAGTAAAAGAGATCAGCACAAGGGGAAAACAAAAGTTGCGGTTTCGGATTTGTGA
GTGATCGGCTAAGGTGATTTAATGGGAGAGGTTTTTTCTTTAAGATTGGTGAAGTATAGAAGATG
GGAAGATGACGATAAAAGAAAGGAGAGGAATGGGTTAATGGCCTCGACTTGAAGAACTAAGAGAG
TGAGAGAATGAAAGAAGAGAAAATGAGCAAAAAGAACA
Found at i:51091603 original size:45 final size:44
Alignment explanation
Indices: 51091518--51091603 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 44
51091508 TATGTGATCT
*
51091518 GAACTCATTGAGTTGTGTATGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGTATGAGTTCATGATATATATGACATCC
* * *
51091562 GAACTTATTGAGTTGTGGTCTGAGTT-AGTGATATGTATGACA
1 GAACTCATTGAGTTGT-GTATGAGTTCA-TGATATATATGACA
51091604 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 16 0.44
45 20 0.56
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (44 bp):
GAACTCATTGAGTTGTGTATGAGTTCATGATATATATGACATCC
Found at i:51110958 original size:45 final size:45
Alignment explanation
Indices: 51110904--51111277 Score: 190
Period size: 45 Copynumber: 8.3 Consensus size: 45
51110894 TTAGCCACTA
* * * *
51110904 TCTTCTTTATTTCCA--ATATGATACCATAGTGTTTTTCAACTATGT
1 TCTTATTTATTTCCATCATAT--TACCATAATGTCTTTCAACTATGG
*
51110949 TCTTATTTATTTCCATCATATTTCCATAATGTCTTTCAACTATGG
1 TCTTATTTATTTCCATCATATTACCATAATGTCTTTCAACTATGG
* *** * * * **
51110994 TCTTATTCAATTTTGGT-ATAGTGCTATGTTGTCTTTCAACTATGG
1 TCTTATT-TATTTCCATCATATTACCATAATGTCTTTCAACTATGG
* *** * *
51111039 TCTTATTCGATTTTGGT-ATATTGCCATATTGTCTTTCAACTATGG
1 TCTTATT-TATTTCCATCATATTACCATAATGTCTTTCAACTATGG
* * * ** *
51111084 TTTTATTCGT-TTTCAAT-ATAGTGTCATAGTGTCTTTCAACTATGG
1 TCTTATT--TATTTCCATCATATTACCATAATGTCTTTCAACTATGG
* * ** * *
51111129 TCTTATTCATTTCCAGT-ATAGTGTCATAGTTTCTTTCAACTATGG
1 TCTTATTTATTTCCA-TCATATTACCATAATGTCTTTCAACTATGG
* * * * ** *
51111174 TCTTATTCATTTTC-TGTATAGTGTCATAGTGTCTTTCAACTATGG
1 TCTTATTTATTTCCAT-CATATTACCATAATGTCTTTCAACTATGG
* ** * **
51111219 TCTTATTCATTTTCGGT-ATAGTGTCATAATGTCTTTCAACTATGG
1 TCTTATTTA-TTTCCATCATATTACCATAATGTCTTTCAACTATGG
*
51111264 TCTTATTCATTTCC
1 TCTTATTTATTTCC
51111278 TGTAACACCC
Statistics
Matches: 282, Mismatches: 37, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
43 1 0.00
44 9 0.03
45 259 0.92
46 8 0.03
47 5 0.02
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.49
Consensus pattern (45 bp):
TCTTATTTATTTCCATCATATTACCATAATGTCTTTCAACTATGG
Found at i:51111090 original size:22 final size:22
Alignment explanation
Indices: 51111065--51111270 Score: 88
Period size: 22 Copynumber: 9.2 Consensus size: 22
51111055 TATATTGCCA
*
51111065 TATTGTCTTTCAACTATGGTTT
1 TATTGTCTTTCAACTATGGTCT
*
51111087 TATTCGT-TTTCAA-TATAGTGTCA
1 TATT-GTCTTTCAACTAT-G-GTCT
*
51111110 TAGTGTCTTTCAACTATGGTCT
1 TATTGTCTTTCAACTATGGTCT
* * *
51111132 TA-T-TCATTTCCAGTATAGTGTCA
1 TATTGTC-TTTCAACTAT-G-GTCT
51111155 TAGTT-TCTTTCAACTATGGTCT
1 TA-TTGTCTTTCAACTATGGTCT
* ** *
51111177 TATTCAT-TTTC-TGTATAGTGTCA
1 TATT-GTCTTTCAACTAT-G-GTCT
*
51111200 TAGTGTCTTTCAACTATGGTCT
1 TATTGTCTTTCAACTATGGTCT
* ** *
51111222 TATTCAT-TTTC-GGTATAGTGTCA
1 TATT-GTCTTTCAACTAT-G-GTCT
*
51111245 TAATGTCTTTCAACTATGGTCT
1 TATTGTCTTTCAACTATGGTCT
51111267 TATT
1 TATT
51111271 CATTTCCTGT
Statistics
Matches: 134, Mismatches: 29, Indels: 42
0.65 0.14 0.20
Matches are distributed among these distances:
20 2 0.01
21 20 0.15
22 48 0.36
23 44 0.33
24 17 0.13
25 3 0.02
ACGTcount: A:0.21, C:0.16, G:0.15, T:0.49
Consensus pattern (22 bp):
TATTGTCTTTCAACTATGGTCT
Found at i:51111117 original size:135 final size:136
Alignment explanation
Indices: 51110927--51111277 Score: 457
Period size: 135 Copynumber: 2.6 Consensus size: 136
51110917 CAATATGATA
* * * * *
51110927 CCATAGTGTTTTTCAACTATGTTCTTATTTA-TTTCCATCATA-TTTCCATAATGTCTTTCAACT
1 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCAAT-ATAGTGT-CATAATGTCTTTCAACT
**
51110990 ATGGTCTTATTCAATTT-TGGTATAGTG-C-TATGTTGTCTTTCAACTATGGTCTTATTCGATTT
64 ATGGTCTTATTCAATTTCCAGTATAGTGTCATA-GTT-TCTTTCAACTATGGTCTTATTC-ATTT
*
51111052 T-GGTATATTG
126 TCGGTATAGTG
* * * *
51111062 CCATATTGTCTTTCAACTATGGTTTTATTCGTTTTCAATATAGTGTCATAGTGTCTTTCAACTAT
1 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCAATATAGTGTCATAATGTCTTTCAACTAT
*
51111127 GGTCTTATTC-ATTTCCAGTATAGTGTCATAGTTTCTTTCAACTATGGTCTTATTCATTTTCTGT
66 GGTCTTATTCAATTTCCAGTATAGTGTCATAGTTTCTTTCAACTATGGTCTTATTCATTTTCGGT
51111191 ATAGTG
131 ATAGTG
* **
51111197 TCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGTATAGTGTCATAATGTCTTTCAACTAT
1 CCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCAATATAGTGTCATAATGTCTTTCAACTAT
51111262 GGTCTTATTC-ATTTCC
66 GGTCTTATTCAATTTCC
51111278 TGTAACACCC
Statistics
Matches: 190, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
134 9 0.05
135 167 0.88
136 12 0.06
137 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (136 bp):
CCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCAATATAGTGTCATAATGTCTTTCAACTAT
GGTCTTATTCAATTTCCAGTATAGTGTCATAGTTTCTTTCAACTATGGTCTTATTCATTTTCGGT
ATAGTG
Found at i:51111281 original size:90 final size:90
Alignment explanation
Indices: 51110928--51111281 Score: 441
Period size: 90 Copynumber: 3.9 Consensus size: 90
51110918 AATATGATAC
* * * ** *
51110928 CATAGTGTTTTTCAACTATGTTCTTATTTA-TTTCCATCATA-TTTCCATAATGTCTTTCAACTA
1 CATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGT-ATAGTGT-CATAATGTCTTTCAACTA
*
51110991 TGGTCTTATTCAATTTT-GGTATAGTG-
64 TGGTCTTATTC-ATTTTCTGTATAGTGT
* * *
51111017 C-TATGTTGTCTTTCAACTATGGTCTTATTCGATTTT-GGTATATTGCCATATTGTCTTTCAACT
1 CATA-G-TGTCTTTCAACTATGGTCTTATTC-ATTTTCGGTATAGTGTCATAATGTCTTTCAACT
* * **
51111080 ATGGTTTTATTCGTTTTCAATATAGTGT
63 ATGGTCTTATTCATTTTCTGTATAGTGT
* * * *
51111108 CATAGTGTCTTTCAACTATGGTCTTATTCATTTCCAGTATAGTGTCATAGTTTCTTTCAACTATG
1 CATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGTATAGTGTCATAATGTCTTTCAACTATG
51111173 GTCTTATTCATTTTCTGTATAGTGT
66 GTCTTATTCATTTTCTGTATAGTGT
51111198 CATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGTATAGTGTCATAATGTCTTTCAACTATG
1 CATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGTATAGTGTCATAATGTCTTTCAACTATG
*
51111263 GTCTTATTCATTTCCTGTA
66 GTCTTATTCATTTTCTGTA
51111282 ACACCCTTAA
Statistics
Matches: 229, Mismatches: 27, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
88 2 0.01
89 10 0.04
90 207 0.90
91 5 0.02
92 5 0.02
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (90 bp):
CATAGTGTCTTTCAACTATGGTCTTATTCATTTTCGGTATAGTGTCATAATGTCTTTCAACTATG
GTCTTATTCATTTTCTGTATAGTGT
Found at i:51113544 original size:47 final size:47
Alignment explanation
Indices: 51113466--51113917 Score: 741
Period size: 47 Copynumber: 9.6 Consensus size: 47
51113456 CCCTTCGGGA
* * * * * *
51113466 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51113512 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51113560 CTCATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113606 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113653 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113700 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113747 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113798 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113847 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113894 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
51113918 CACAATTATC
Statistics
Matches: 387, Mismatches: 10, Indels: 19
0.93 0.02 0.05
Matches are distributed among these distances:
45 7 0.02
46 47 0.12
47 237 0.61
48 2 0.01
49 47 0.12
51 47 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51113718 original size:140 final size:141
Alignment explanation
Indices: 51113466--51113917 Score: 741
Period size: 140 Copynumber: 3.2 Consensus size: 141
51113456 CCCTTCGGGA
* * * * * * *
51113466 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATACA
*
51113530 CTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
51113595 CGG-CATTAGGC
130 CGGCCATTAGGC
51113606 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51113671 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
51113736 GGCCATTAGGC
131 GGCCATTAGGC
51113747 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TAT
51113812 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
60 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCAT
51113877 CACATCGGCCATTAGGC
125 CACATCGGCCATTAGGC
51113894 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
51113918 CACAATTATC
Statistics
Matches: 296, Mismatches: 8, Indels: 15
0.93 0.03 0.05
Matches are distributed among these distances:
140 121 0.41
141 25 0.08
143 9 0.03
145 48 0.16
147 93 0.31
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:51113953 original size:194 final size:190
Alignment explanation
Indices: 51113466--51113917 Score: 702
Period size: 194 Copynumber: 2.4 Consensus size: 190
51113456 CCCTTCGGGA
* * * * * * *
51113466 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATACA
*
51113530 CTTTCACATTCATCACATCGGCCATTAGGCC-TCATCAC----ATATATACACTTTCACATTCAT
65 C-TTCACATTCATCACATCAGCCATTAGGCCAT-ATCACATATATATATACACTTTCACATTCAT
51113590 CACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
128 CACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113653 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
51113718 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
66 -TTCACATTCATCACATCAGCCATTAGGCCATATCACATATATATATACACTTTCACATTCATCA
51113783 CATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CATCGG-CATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
51113847 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
51113911 TTCACAT
66 TTCACAT
51113918 CACAATTATC
Statistics
Matches: 249, Mismatches: 7, Indels: 13
0.93 0.03 0.05
Matches are distributed among these distances:
187 90 0.36
188 3 0.01
191 30 0.12
192 24 0.10
194 102 0.41
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTCACATTCATCACATCAGCCATTAGGCCATATCACATATATATATACACTTTCACATTCATCAC
ATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51116891 original size:34 final size:34
Alignment explanation
Indices: 51116853--51116917 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
51116843 TTATATACAT
51116853 GATATAATTTACTTATCAAACACAGCATTTATGC
1 GATATAATTTACTTATCAAACACAGCATTTATGC
51116887 GATATAATTTACTTATCAAACACAGCATTTA
1 GATATAATTTACTTATCAAACACAGCATTTA
51116918 GGCCAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (34 bp):
GATATAATTTACTTATCAAACACAGCATTTATGC
Found at i:51125357 original size:27 final size:27
Alignment explanation
Indices: 51125310--51125361 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
51125300 ATAATTCAAT
*
51125310 TTCCAATCAATATACAATTTCAATCCA
1 TTCCAATCAATACACAATTTCAATCCA
*
51125337 TTCCAATTCAATACAC-TTTTCAATC
1 TTCCAA-TCAATACACAATTTCAATC
51125362 ATACACATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (27 bp):
TTCCAATCAATACACAATTTCAATCCA
Found at i:51126128 original size:18 final size:17
Alignment explanation
Indices: 51126096--51126130 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51126086 CTTTTCCATC
*
51126096 CTTTTGTTTCTTTATTT
1 CTTTTATTTCTTTATTT
51126113 CTTTTATTTACTTTATTT
1 CTTTTATTT-CTTTATTT
51126131 TATGTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.74
Consensus pattern (17 bp):
CTTTTATTTCTTTATTT
Found at i:51131344 original size:11 final size:11
Alignment explanation
Indices: 51131328--51131353 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51131318 TATTCTTACC
51131328 CCGATCAAGAT
1 CCGATCAAGAT
51131339 CCGATCAAGAT
1 CCGATCAAGAT
51131350 CCGA
1 CCGA
51131354 ATCACGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.31, G:0.19, T:0.15
Consensus pattern (11 bp):
CCGATCAAGAT
Found at i:51132409 original size:21 final size:21
Alignment explanation
Indices: 51132360--51132414 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
51132350 CACACACTCG
*
51132360 TGTGGTAAATCCACATGCCTG
1 TGTGGTAAATCCACATGCCTA
*
51132381 TGTGGTAAATCCACATGTCTA
1 TGTGGTAAATCCACATGCCTA
*
51132402 TGTTGTAACATCC
1 TGTGGTAA-ATCC
51132415 CAAATTAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (21 bp):
TGTGGTAAATCCACATGCCTA
Found at i:51133763 original size:48 final size:49
Alignment explanation
Indices: 51133625--51133763 Score: 133
Period size: 48 Copynumber: 2.9 Consensus size: 49
51133615 ATGAGATCCC
*
51133625 GTGTAAGACCATGTCTGGGATATGGA-ATCAGCATCTGAG-ATG-AGAGCCA
1 GTGTAAGACCATGTCTGGGATAT-GACATCGGCAT-TG-GTATGTAGAGCCA
* * * * * * * *
51133674 GTGTAAGACCATGTCTGGGACAAGGCATCGACGTTGATATGTA-TGCTA
1 GTGTAAGACCATGTCTGGGATATGACATCGGCATTGGTATGTAGAGCCA
*
51133722 GTGTAAGACCATATCTGGGATATGACATCGGCATTGGTATGT
1 GTGTAAGACCATGTCTGGGATATGACATCGGCATTGGTATGT
51133764 GGTTTCATGT
Statistics
Matches: 71, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
48 44 0.62
49 27 0.38
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (49 bp):
GTGTAAGACCATGTCTGGGATATGACATCGGCATTGGTATGTAGAGCCA
Found at i:51137034 original size:22 final size:21
Alignment explanation
Indices: 51136992--51137035 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
51136982 ATGCATATTG
*
51136992 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
51137013 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
51137035 A
1 A
51137036 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:51137694 original size:39 final size:40
Alignment explanation
Indices: 51137599--51137821 Score: 246
Period size: 39 Copynumber: 5.7 Consensus size: 40
51137589 TTGAATGATG
*
51137599 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC--AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
51137637 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
51137678 TCCGGGCTAAG-CCCGAAGGCATTTGTTCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51137717 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
51137756 TCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51137795 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51137822 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 16, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
39 92 0.57
40 65 0.41
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51137745 original size:78 final size:80
Alignment explanation
Indices: 51137599--51137821 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
51137589 TTGAATGATG
* * *
51137599 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-ATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
51137660 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* *
51137678 TCCGGGCTAAG-CCCGAAGGCATTTGTTCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATT
*
51137740 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
51137756 TCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
51137821 G
66 G
51137822 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 46 0.37
79 62 0.50
80 16 0.13
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:51137843 original size:79 final size:79
Alignment explanation
Indices: 51137692--51137844 Score: 177
Period size: 79 Copynumber: 1.9 Consensus size: 79
51137682 GGCTAAGCCC
* * ** *
51137692 GAAGGCATTTGTTCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
*
51137757 CTGGGTTAAGTCCT
66 CTCGGTTAAGTCCT
* *
51137771 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTA
*
51137834 TATC-CGGTTAA
63 AATCTCGGTTAA
51137845 ATTCCGAAGG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
78 2 0.03
79 36 0.58
80 24 0.39
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
CTCGGTTAAGTCCT
Found at i:51137854 original size:79 final size:78
Alignment explanation
Indices: 51137651--51137854 Score: 175
Period size: 79 Copynumber: 2.6 Consensus size: 78
51137641 GGACTAAGAT
** * * * *
51137651 CCGAAGGCATTTGTGCGAGAT-ACTAATTC-CGGGCTAAGCCCGAAGGCATTTGTTCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCTC-GGTTAAGTCCGAAGGCATTTGTGCGAGATACT
*
51137714 AATTCCGGGCTAAGC
64 AATACCGGGCTAAGC
** * * *
51137729 CCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCTCGGTTAAGTCC-GAAGGCATTTGTGCGAGATACTA
*
51137793 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
* *
51137809 CCGAAGGCATTTGAACGAG-GAGCTATATC-CGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCTCGGTT-AAGTCCGAAGG
51137855 TACGTGATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 36 0.34
79 39 0.37
80 29 0.28
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCTCGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:51145340 original size:22 final size:21
Alignment explanation
Indices: 51145298--51145341 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
51145288 ATGCATATTG
*
51145298 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
51145319 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
51145341 A
1 A
51145342 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:51145999 original size:42 final size:41
Alignment explanation
Indices: 51145907--51146096 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 41
51145897 TTGAATGATG
* *
51145907 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* *
51145947 TCCGGACTAAGAT-CCGAAGGCATTTGGTGCGAAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTT-GTGCG-AGTTACTAATA
51145989 TCCGGGCTAAG-CCCGAAAGGCACTATTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCG-AAGGCA-T-TTGTGCGAGTTACTAATA
* *
51146031 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
51146071 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51146097 AACAAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 24
0.78 0.07 0.15
Matches are distributed among these distances:
39 1 0.01
40 55 0.44
41 8 0.06
42 47 0.37
43 13 0.10
44 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:51147589 original size:47 final size:47
Alignment explanation
Indices: 51147514--51147868 Score: 602
Period size: 47 Copynumber: 7.5 Consensus size: 47
51147504 TTCGGGACTC
* * * * * * *
51147514 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
51147561 GTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
51147608 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
51147655 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
51147702 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
51147749 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
51147796 ATCACATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
51147845 ATCACATATATACACTTTCACATT
1 ATCACATATATACACTTTCACATT
51147869 TATTCAAATA
Statistics
Matches: 294, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 248 0.84
49 46 0.16
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:51152768 original size:38 final size:38
Alignment explanation
Indices: 51152691--51152840 Score: 176
Period size: 38 Copynumber: 3.9 Consensus size: 38
51152681 GATTTATCGA
* *** * * *
51152691 CACAAAGCCTGCTAGATGCTAAGCCTGTACAACATCGG
1 CACAAAGCCTACTAGGCACTAAGCCTGAATAACACCGG
51152729 CACGAAA-CCTACTAGGCACTAAGCCTGAATAACACCGG
1 CAC-AAAGCCTACTAGGCACTAAGCCTGAATAACACCGG
* *
51152767 CACAAAGCCTACTAGGCATTAAGCCTGAATAACACCAG
1 CACAAAGCCTACTAGGCACTAAGCCTGAATAACACCGG
* * *
51152805 CACAAAGCCTGCTAAGCACTAAGCCTCAATAACACC
1 CACAAAGCCTACTAGGCACTAAGCCTGAATAACACC
51152841 CAATTTGAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
37 3 0.03
38 91 0.94
39 3 0.03
ACGTcount: A:0.37, C:0.31, G:0.17, T:0.15
Consensus pattern (38 bp):
CACAAAGCCTACTAGGCACTAAGCCTGAATAACACCGG
Found at i:51152774 original size:22 final size:22
Alignment explanation
Indices: 51152743--51152815 Score: 59
Period size: 22 Copynumber: 3.6 Consensus size: 22
51152733 AAACCTACTA
*
51152743 GGCACTAAGCCTGAATAACACC
1 GGCACAAAGCCTGAATAACACC
*
51152765 GGCACAAAGCCT-ACT---A--
1 GGCACAAAGCCTGAATAACACC
**
51152781 GGCATTAAGCCTGAATAACACC
1 GGCACAAAGCCTGAATAACACC
*
51152803 AGCACAAAGCCTG
1 GGCACAAAGCCTG
51152816 CTAAGCACTA
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
16 10 0.27
17 2 0.05
18 1 0.03
20 1 0.03
21 2 0.05
22 21 0.57
ACGTcount: A:0.37, C:0.30, G:0.19, T:0.14
Consensus pattern (22 bp):
GGCACAAAGCCTGAATAACACC
Found at i:51156300 original size:17 final size:19
Alignment explanation
Indices: 51156280--51156324 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
51156270 GATAAAATTA
51156280 TATAAAAAT-TA-TGAAAT
1 TATAAAAATATAGTGAAAT
51156297 TATAAAAGATATAGTGAAAT
1 TATAAAA-ATATAGTGAAAT
51156317 T-TAAAAAT
1 TATAAAAAT
51156325 GGTTTTGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 7 0.28
20 7 0.28
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (19 bp):
TATAAAAATATAGTGAAAT
Found at i:51165461 original size:29 final size:29
Alignment explanation
Indices: 51165419--51165477 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
51165409 GAGTTTTTCA
*
51165419 AAAAATGACCTATTCTA-ATAATTTTGTTT
1 AAAAATGACATATTC-ACATAATTTTGTTT
* *
51165448 AAAATTGACATATTCACATAATTTTTTTT
1 AAAAATGACATATTCACATAATTTTGTTT
51165477 A
1 A
51165478 CATTTATTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (29 bp):
AAAAATGACATATTCACATAATTTTGTTT
Found at i:51167171 original size:14 final size:13
Alignment explanation
Indices: 51167134--51167199 Score: 68
Period size: 14 Copynumber: 5.2 Consensus size: 13
51167124 TTTTTTTTAT
*
51167134 TTTAATTTTGAT-
1 TTTAATTTTGTTG
*
51167146 TTTGATTTTGTTG
1 TTTAATTTTGTTG
51167159 TTTAATGTTTGTTG
1 TTTAAT-TTTGTTG
51167173 -TT--TTTTGTTG
1 TTTAATTTTGTTG
51167183 TTTAATATTTGTTG
1 TTTAAT-TTTGTTG
51167197 TTT
1 TTT
51167200 TTCGTGAACA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
10 7 0.16
11 3 0.07
12 10 0.22
13 8 0.18
14 17 0.38
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.70
Consensus pattern (13 bp):
TTTAATTTTGTTG
Found at i:51167180 original size:24 final size:24
Alignment explanation
Indices: 51167151--51167201 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
51167141 TTGATTTTGA
*
51167151 TTTTGTTGTTTAATGTTTGTTGTT
1 TTTTGTTGTTTAATATTTGTTGTT
51167175 TTTTGTTGTTTAATATTTGTTGTT
1 TTTTGTTGTTTAATATTTGTTGTT
51167199 TTT
1 TTT
51167202 CGTGAACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.10, C:0.00, G:0.18, T:0.73
Consensus pattern (24 bp):
TTTTGTTGTTTAATATTTGTTGTT
Found at i:51168364 original size:23 final size:23
Alignment explanation
Indices: 51168311--51168364 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
51168301 TTTATTTTAA
51168311 AATATATT-AAATAATAAAATATT
1 AATAT-TTAAAATAATAAAATATT
*
51168334 ATTATTTAAAATAATAAAATATAT
1 AATATTTAAAATAATAAAATAT-T
51168358 AAT-TTTA
1 AATATTTA
51168365 TATTTTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.07
23 22 0.81
24 3 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AATATTTAAAATAATAAAATATT
Found at i:51171401 original size:53 final size:53
Alignment explanation
Indices: 51171316--51171511 Score: 131
Period size: 53 Copynumber: 3.6 Consensus size: 53
51171306 TTCATTTTTA
* * * * *
51171316 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGTCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
51171369 AACTCACCATTGTCGTGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * * * * * *** * *
51171423 TAGTTTATCAATGCCATGTCTAGATATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * *
51171478 AACTTACCAATGCCATGCCTTGGCTTGGTCTTAC
1 AACTCACCATTGCCATGCCTTGACATGGTCTTAC
51171512 TTGATATCCT
Statistics
Matches: 106, Mismatches: 35, Indels: 3
0.74 0.24 0.02
Matches are distributed among these distances:
53 43 0.41
54 27 0.25
55 36 0.34
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:51176807 original size:47 final size:45
Alignment explanation
Indices: 51176616--51176930 Score: 180
Period size: 47 Copynumber: 6.7 Consensus size: 45
51176606 AGGCCAATGC
* * * *
51176616 CATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTATACGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACTC-ACTCTAC--GCTGATG
* * *
51176665 CATGACCCAGACATGTCTTACACTAGCA-TGAAACT-TA-G-TCGATG
1 CATGTCCCAGACATGTCTTACACTGGCACT--CACTCTACGCT-GATG
* * * * **
51176709 CATGTCCTAGACACGTCTTACACTGGCTAACATCA-TCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGC--AC-TCACTCTACGCTGATG
51176756 CATGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCACTCA-CTCTACGCTGATG
* * * *
51176802 CCATGTCCCAGACGTGGTCTTACACGGGCTA-TCA-TGATACGGTTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGC-ACTCACT-CTAC-GCTGATG
* * *
51176850 CATGTCCCAAACATGTCTTACACTAGCCCTCATCTCAATAC-C-GATG
1 CATGTCCCAGACATGTCTTACACTGGCACTCA-CTC--TACGCTGATG
* *
51176896 CCATGTCCCAGACATGGTCTTATACTGGCTCTCAC
1 -CATGTCCCAGACAT-GTCTTACACTGGCACTCAC
51176931 GTAACCCCTT
Statistics
Matches: 209, Mismatches: 33, Indels: 50
0.72 0.11 0.17
Matches are distributed among these distances:
43 1 0.00
44 31 0.15
45 3 0.01
46 30 0.14
47 74 0.35
48 53 0.25
49 17 0.08
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCACTCTACGCTGATG
Found at i:51176850 original size:141 final size:139
Alignment explanation
Indices: 51176601--51176917 Score: 329
Period size: 141 Copynumber: 2.3 Consensus size: 139
51176591 TGGTTATCTC
* **
51176601 CATCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTATACGTGCTGATGC
1 CATCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACCTATACG-GCTGATGC
* *
51176666 ATGACCCAGACATGTCTTACACTAGCATGAAACTTAGTCGATGCATGTCCTAGACACGTCTTACA
65 ATGACCCAGACATGTCTTACACTAGCATGAAAC-TAGTCGATGCATGTCCCAAACACGTCTTACA
51176731 CTGGCTAACAT
129 CTGGCTAACAT
* *
51176742 CATCGAGGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCACCTCTAC-GCTGATGCC
1 CATCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACCTATACGGCTGATG-C
* * * * * * *
51176804 ATGTCCCAGACGTGGTCTTACACGGGCTATCATGATAC-GGTTGATGCATGTCCCAAACATGTCT
65 ATGACCCAGACAT-GTCTTACA----CTAGCATGAAACTAGTCGATGCATGTCCCAAACACGTCT
* ***
51176868 TACACTAGCCCTCAT
125 TACACTGGCTAACAT
* ** *
51176883 C-TCAATACCGATGCCATGTCCCAGACATGGTCTTA
1 CATCGAGGCCAATGCCATGTCCCAGACATGGTCTTA
51176918 TACTGGCTCT
Statistics
Matches: 146, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
137 7 0.05
138 12 0.08
139 28 0.19
140 22 0.15
141 61 0.42
142 6 0.04
143 10 0.07
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (139 bp):
CATCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACCTATACGGCTGATGCA
TGACCCAGACATGTCTTACACTAGCATGAAACTAGTCGATGCATGTCCCAAACACGTCTTACACT
GGCTAACAT
Found at i:51178775 original size:27 final size:27
Alignment explanation
Indices: 51178745--51178863 Score: 112
Period size: 27 Copynumber: 4.4 Consensus size: 27
51178735 GAGTTTGTTG
* *
51178745 CAAAGGCGTTCCTTTCATATTGTGCCA
1 CAAAGGCATTCCTTTCATATTGCGCCA
** * * **
51178772 CAAATACATTCTTTTAATATTGCGTTA
1 CAAAGGCATTCCTTTCATATTGCGCCA
*** *
51178799 CAAAGATGTTCTTTTCATATTGCGCCA
1 CAAAGGCATTCCTTTCATATTGCGCCA
* *
51178826 CAAAGGCACTCCTTTCATATTGCACCA
1 CAAAGGCATTCCTTTCATATTGCGCCA
51178853 CAAAGGCATTC
1 CAAAGGCATTC
51178864 ATTATCTGTC
Statistics
Matches: 71, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (27 bp):
CAAAGGCATTCCTTTCATATTGCGCCA
Found at i:51181150 original size:48 final size:48
Alignment explanation
Indices: 51181087--51181310 Score: 228
Period size: 48 Copynumber: 4.8 Consensus size: 48
51181077 TGGTAGGATA
* * *
51181087 CCAATGCCATATCCCAGATATGGTCCTACATGGGATCACATATCAATC
1 CCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCAATG
* * ** * *
51181135 CCAATGCCATGTCCCAGACATAGTCTTACATGGGATCGTAAATCGATG
1 CCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCAATG
* *
51181183 CCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATAT-AGATG
1 CCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCA-ATG
** * **
51181231 CCAAT---A-G-CCCA-ACTATGGTCTTACATGAAATTACATATCGGTG
1 CCAATGCCATGTCCCAGA-TATGGTCTTACATGGGATCACATATCAATG
*
51181274 CCAAAGCCATGTCCCAGATATGGTCTTACATGGGATC
1 CCAATGCCATGTCCCAGATATGGTCTTACATGGGATC
51181311 GCACATAACC
Statistics
Matches: 141, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
42 1 0.01
43 30 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 105 0.74
49 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCAATG
Found at i:51182747 original size:30 final size:30
Alignment explanation
Indices: 51182711--51182772 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
51182701 CTTGCCTTAG
51182711 AAGAAGGAAGAAGAGAACTCTCATTTCCCA
1 AAGAAGGAAGAAGAGAACTCTCATTTCCCA
51182741 AAGAAGGAAGAAGAGAACTCTCATTTCCCA
1 AAGAAGGAAGAAGAGAACTCTCATTTCCCA
51182771 AA
1 AA
51182773 CTTGAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.16
Consensus pattern (30 bp):
AAGAAGGAAGAAGAGAACTCTCATTTCCCA
Found at i:51185801 original size:15 final size:15
Alignment explanation
Indices: 51185777--51185825 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
51185767 TAATTCAAAA
51185777 AATTTCACTTTATTC
1 AATTTCACTTTATTC
*
51185792 AATTTGACTTTAAATTTC
1 AATTTCACTTT--A-TTC
51185810 -ATTTCACTTTATTC
1 AATTTCACTTTATTC
51185824 AA
1 AA
51185826 CTTAACACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 3 0.11
15 12 0.43
17 10 0.36
18 3 0.11
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTTCACTTTATTC
Found at i:51194495 original size:16 final size:16
Alignment explanation
Indices: 51194476--51194508 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51194466 TATTAATGTT
51194476 AAATTTT-ATAATTAAA
1 AAATTTTAAT-ATTAAA
51194492 AAATTTTAATATTAAA
1 AAATTTTAATATTAAA
51194508 A
1 A
51194509 TAACTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATTTTAATATTAAA
Found at i:51196197 original size:15 final size:16
Alignment explanation
Indices: 51196177--51196209 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
51196167 AATTGGTTCT
*
51196177 AATAATTGA-AAATTA
1 AATAATTCATAAATTA
51196192 AATAATTCATAAATTA
1 AATAATTCATAAATTA
51196208 AA
1 AA
51196210 AAGAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATTCATAAATTA
Found at i:51200448 original size:23 final size:23
Alignment explanation
Indices: 51200422--51200485 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 23
51200412 TAAGCACTGT
51200422 TGAGCTGAAATGGTAAGCTCTAA
1 TGAGCTGAAATGGTAAGCTCTAA
*
51200445 TGAGCTGAAATGGTAAGCTCTAG
1 TGAGCTGAAATGGTAAGCTCTAA
*
51200468 TGAGCTGAGAATAGTAAG
1 TGAGCTGA-AATGGTAAG
51200486 TTCTTACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 30 0.79
24 8 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAATGGTAAGCTCTAA
Found at i:51204204 original size:27 final size:28
Alignment explanation
Indices: 51204120--51204217 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
51204110 CATGAGATTG
* * * *
51204120 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51204149 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51204177 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51204204 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51204218 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51204228 original size:27 final size:27
Alignment explanation
Indices: 51204148--51204230 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
51204138 TAAATTGTAC
* *
51204148 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
51204176 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
51204203 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
51204230 A
1 A
51204231 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:51204231 original size:29 final size:27
Alignment explanation
Indices: 51204120--51204231 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
51204110 CATGAGATTG
** * *
51204120 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
51204149 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
51204177 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
51204204 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
51204232 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:51206137 original size:40 final size:40
Alignment explanation
Indices: 51206067--51206311 Score: 395
Period size: 40 Copynumber: 6.2 Consensus size: 40
51206057 CGGATGATAA
* *
51206067 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
51206107 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
51206147 CGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTAC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
51206187 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
51206227 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
51206267 CGAAGGCATTTGTGCGAGGTACTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
51206306 CGAAGG
1 CGAAGG
51206312 TACTTGGTTT
Statistics
Matches: 194, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.07
40 179 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:51210302 original size:28 final size:28
Alignment explanation
Indices: 51210239--51210389 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
51210229 ATATTAAGTC
*
51210239 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51210266 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51210294 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51210322 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51210350 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51210379 CGCACACTTAG
1 CGCACACTTAG
51210390 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51217992 original size:40 final size:40
Alignment explanation
Indices: 51217861--51218102 Score: 377
Period size: 40 Copynumber: 6.2 Consensus size: 40
51217851 CGGATGATAA
* *
51217861 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
51217901 CGAAGGCATTTGT--GAGTTACTATATCCGGGCTAAGT-C
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
51217938 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
51217978 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
51218018 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
51218058 CGAAGGCATTTGTGCGAGCTACTATATTC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
51218097 CGAAGG
1 CGAAGG
51218103 TACTTGGTTT
Statistics
Matches: 192, Mismatches: 6, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
37 14 0.07
38 19 0.10
39 38 0.20
40 121 0.63
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:51229802 original size:129 final size:125
Alignment explanation
Indices: 51229501--51229809 Score: 352
Period size: 125 Copynumber: 2.4 Consensus size: 125
51229491 TAAATCACAT
* * * * *
51229501 CCCAGCACGATTGGGCACGATTTATCGAATTTCCAAATACAAAATATTGCCTCATTCTAATTTAA
1 CCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
* *
51229566 GAAAACATGGATGAAATGTCAAAAGGATTTCCCATATCTTAGTCGAATGAAAAATCGAAA
66 GAAAACATGGACGAAATGTCAAAAAGATTTCCCATATCTTAGTCGAATGAAAAATCGAAA
* * * * * *
51229626 CCCAGCACGATTGGGCACGATCTCTCAAGCTTCCAAACACGAGATATTGCTTCATTTTAGTTTAA
1 CCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
* ** * *
51229691 GAAAACATGGACGAAATTTCAAAAAAAAAGATATT-CTGTATTTTAGTTGAATGAAAAAAT-GAA
66 GAAAACATGGACGAAATGTC----AAAAAGAT-TTCCCATATCTTAGTCGAATG-AAAAATCGAA
51229754 A
125 A
* * * *
51229755 CCCAGCACGATTGGGCACAATCTCTCAAACTTCTAGATACGAAATATTTCCTCAT
1 CCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCAT
51229810 GTTGAGAGGG
Statistics
Matches: 152, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
125 72 0.47
129 72 0.47
130 8 0.05
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (125 bp):
CCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
GAAAACATGGACGAAATGTCAAAAAGATTTCCCATATCTTAGTCGAATGAAAAATCGAAA
Found at i:51230527 original size:18 final size:18
Alignment explanation
Indices: 51230504--51230547 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
51230494 CACGTAAAAT
51230504 ATTAAAATAGA-TAAATAA
1 ATTAAAA-AGAGTAAATAA
* *
51230522 ATTAAAAAGAGTGAATGA
1 ATTAAAAAGAGTAAATAA
51230540 ATTAAAAA
1 ATTAAAAA
51230548 ACTAAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (18 bp):
ATTAAAAAGAGTAAATAA
Found at i:51231942 original size:133 final size:133
Alignment explanation
Indices: 51231772--51232069 Score: 499
Period size: 133 Copynumber: 2.2 Consensus size: 133
51231762 AATAGCTAGG
* * * *
51231772 ATCTGTTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTCCAGTCTGCTTTTTGCAATTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTCCAATCTGCTTTCTGCAACTTC
*
51231837 A-AGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTTCCTCAGAGAGATAAGGCCGGTGGC
66 AGA-AAGATAAGACTTGTATCTTCAACCTGCTCTCCTGCTTCCTCAGAGAGATAAGGCCGGTGGC
51231901 TAAA
130 TAAA
*
51231905 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAAATTTCCAATCTGCTTTCTGCAACTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTCCAATCTGCTTTCTGCAACTTC
*
51231970 AGAAAGATAAGACTTGTATCTTCAACCTGCTCTCCTGCTTCCTCAGAGAGATAAGGCTGGTGGCT
66 AGAAAGATAAGACTTGTATCTTCAACCTGCTCTCCTGCTTCCTCAGAGAGATAAGGCCGGTGGCT
51232035 AAA
131 AAA
* *
51232038 ATCTGCTCGATAGCCTATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
51232070 CTCGCCATCT
Statistics
Matches: 154, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
133 153 0.99
134 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTCCAATCTGCTTTCTGCAACTTC
AGAAAGATAAGACTTGTATCTTCAACCTGCTCTCCTGCTTCCTCAGAGAGATAAGGCCGGTGGCT
AAA
Found at i:51232393 original size:177 final size:177
Alignment explanation
Indices: 51231905--51232515 Score: 922
Period size: 177 Copynumber: 3.4 Consensus size: 177
51231895 GGTGGCTAAA
* * * *
51231905 ATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAAATTTCCAATCTGCTTTCTGCAACTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT-AATTTTCAGTCTGCTTCCTGCAACTTC
* *
51231970 AGAAAGATAAGACTTGTATCTTCAACCTGCTCTCCTGCTTCCTCAGAGAGATAAGGCTGGTGGCT
65 AGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * * *
51232035 AAAATCTGCTCGATAGCCTATACATGGAGATAAGACTCGCCATCTTCG
130 AAAATCTGCTCCATAGCCTATACATAGAGATAAGACTCGCCATTTTTG
*
51232083 ATCTGCTCCATAGCCGATACATGGAGCTAAGATCTGTAAGTCTTT-AGTCTGCTTCCTGCAACTT
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-T-TTTCAGTCTGCTTCCTGCAACTT
* *
51232147 CAGGAAGATAAGATTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGC
64 CAGAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGC
* * * *
51232212 TAAAATTTACTCCAT-GACCTATACATAGAGATAAGACTCGTCATTTTTT
129 TAAAATCTGCTCCATAG-CCTATACATAGAGATAAGACTCGCCATTTTTG
*
51232261 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
*
51232326 -AGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGGTACCTCAGAGAGATAAGGCTGGTGGCT
66 GA-AAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCT
* * * * * *
51232390 AAAATCTGCTTCATAGTCGATAAATAGAGATAAGACTCGGCATTTCTG
130 AAAATCTGCTCCATAGCCTATACATAGAGATAAGACTCGCCATTTTTG
*
51232438 ATCTGCTCCATAGCCGATACATGGAGATAAGATATGTAATTTTCAGTCTGCTTCCTGCAACTTCA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
51232503 GAAAGATAAGACT
66 GAAAGATAAGACT
51232516 AGTGACTAGA
Statistics
Matches: 393, Mismatches: 33, Indels: 15
0.89 0.07 0.03
Matches are distributed among these distances:
176 3 0.01
177 196 0.50
178 192 0.49
179 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (177 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCA
GAAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
AAATCTGCTCCATAGCCTATACATAGAGATAAGACTCGCCATTTTTG
Found at i:51232488 original size:45 final size:45
Alignment explanation
Indices: 51232394--51232735 Score: 129
Period size: 45 Copynumber: 7.7 Consensus size: 45
51232384 GTGGCTAAAA
* * * * * ** *
51232394 TCTGCTTCATAGTCGATAAATAGAGATAAGACT-CGGCATTTCTG
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTATGTAATTTCAG
51232438 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TATGTAATTTTCAG
1 -TCTGCTCCATAGCCGATACATGGAGATAAGACTATGTAA-TTTCAG
* * * * * ** *
51232484 TCTGCTTCC-T-G-CAACTTCA-GAAAGATAAGACTA-GTGACTAGAA
1 TCTGC-TCCATAGCCGA-TACATG-GAGATAAGACTATGTAATTTCAG
* ** *
51232527 TCTGCTCCATAGCCGATACATGGAGATAAGACT-CGCCATTTCTG
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTATGTAATTTCAG
* * *
51232571 ATCTGTTCTATAGCCGATACATGGAGATAAGA-TCTGTAATTTTCAG
1 -TCTGCTCCATAGCCGATACATGGAGATAAGACTATGTAA-TTTCAG
** * * *** ** *
51232617 TCTGCTTCC-T-G-TAACTTCA-GGAAGATAAAACTA-GTGGCTAAAA
1 TCTGC-TCCATAGCCGA-TACATGG-AGATAAGACTATGTAATTTCAG
* * * ** *
51232660 TCTGCTCCATAGTCGATACATAGAGATAAGACTCTCCATTTTC-G
1 TCTGCTCCATAGCCGATACATGGAGATAAGACTATGTAATTTCAG
51232704 ATCTGCTCCATAGCCGATACATGGAGATAAGA
1 -TCTGCTCCATAGCCGATACATGGAGATAAGA
51232736 TCTGTAAATT
Statistics
Matches: 212, Mismatches: 61, Indels: 48
0.66 0.19 0.15
Matches are distributed among these distances:
42 6 0.03
43 22 0.10
44 60 0.28
45 109 0.51
46 15 0.07
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (45 bp):
TCTGCTCCATAGCCGATACATGGAGATAAGACTATGTAATTTCAG
Found at i:51232531 original size:133 final size:133
Alignment explanation
Indices: 51232367--51232783 Score: 602
Period size: 133 Copynumber: 3.1 Consensus size: 133
51232357 TCTTGGTACC
* * * * * *
51232367 TCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTTCATAGTCGATAAATAGAGATAAGACTCGGCA
1 TCAGAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGTCGATACATAGAGATAAGACTCGCCA
*
51232432 TTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATATGTAATTTTCAGTCTGCTTCCTGCA
66 TTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCA
51232497 ACT
131 ACT
* * * *
51232500 TCAGAAAGATAAGACTAGTGACTAGAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA
1 TCAGAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGTCGATACATAGAGATAAGACTCGCCA
* * *
51232565 TTTCTGATCTGTTCTATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGTA
66 TTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCA
51232630 ACT
131 ACT
* * *
51232633 TCAGGAAGATAAAACTAGTGGCTAAAATCTGCTCCATAGTCGATACATAGAGATAAGACTCTCCA
1 TCAGAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGTCGATACATAGAGATAAGACTCGCCA
* *
51232698 TTT-TCGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTTAATCTGCTTCCTT
66 TTTCT-GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT-AATTTTCAGTCTGCTTCC-T
* *
51232762 GCTACC
128 GCAACT
*
51232768 TCAGGAAGATAAGACT
1 TCAGAAAGATAAGACT
51232784 CGTATCTTCA
Statistics
Matches: 252, Mismatches: 29, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
132 1 0.00
133 216 0.86
134 16 0.06
135 19 0.08
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (133 bp):
TCAGAAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGTCGATACATAGAGATAAGACTCGCCA
TTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCA
ACT
Found at i:51244182 original size:125 final size:126
Alignment explanation
Indices: 51244062--51244361 Score: 388
Period size: 125 Copynumber: 2.4 Consensus size: 126
51244052 TAAATCACAT
* * *
51244062 CCCAGCATGATTGGGCACGATTTATCGAATTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
1 CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
**
51244127 GAAAACATGGATGAAATGTC-AAAAGGAT-TTCCCATATCTTAGTCGAATGAAAAATCGAAA
66 GAAAACATGGATGAAATGTCAAAAAAAATATT-CCATATCTTAGTCGAATGAAAAATCGAAA
* * * * * * * *
51244187 CCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAGATATTTCTTCATTTTAGTTTAA
1 CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
* * * *
51244252 GAAAACATGGATGAAATTTCAAAAAAAAATATTCCGTATTTTAGTCGAATGAAAAACCGAAA
66 GAAAACATGGATGAAATGTC-AAAAAAAATATTCCATATCTTAGTCGAATGAAAAATCGAAA
* * *
51244314 CCCAGCATGATTGGGCACAATCTCTCAAATTTCTAGATACGAAATATT
1 CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATT
51244362 TCCTTATGTT
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
125 73 0.49
127 73 0.49
128 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (126 bp):
CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
GAAAACATGGATGAAATGTCAAAAAAAATATTCCATATCTTAGTCGAATGAAAAATCGAAA
Found at i:51244362 original size:127 final size:125
Alignment explanation
Indices: 51244062--51244365 Score: 394
Period size: 127 Copynumber: 2.4 Consensus size: 125
51244052 TAAATCACAT
* * * *
51244062 CCCAGCATGATTGGGCACGATTTATCGAATTTCCAAATACGAAATATTGCCTCATTCTAATTTAA
1 CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTTCCTCATTCTAATTTAA
** *
51244127 GAAAACATGGATGAAATGTCAAAAGGATTTCCCATATCTTAGTCGAATGAAAAATCGAAA
66 GAAAACATGGATGAAATGTCAAAAAAATTTCCCATATCTTAGTCGAATGAAAAACCGAAA
* * * * * * *
51244187 CCCAGCACGATTGGGCACGATCTCTCAAACTTCCAAACACGAGATATTTCTTCATTTTAGTTTAA
1 CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTTCCTCATTCTAATTTAA
* * *
51244252 GAAAACATGGATGAAATTTCAAAAAAAAATATT-CCGTATTTTAGTCGAATGAAAAACCGAAA
66 GAAAACATGGATGAAATGTC--AAAAAAAT-TTCCCATATCTTAGTCGAATGAAAAACCGAAA
* * *
51244314 CCCAGCATGATTGGGCACAATCTCTCAAATTTCTAGATACGAAATATTTCCT
1 CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTTCCT
51244366 TATGTTGAGA
Statistics
Matches: 151, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
125 73 0.48
127 76 0.50
128 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (125 bp):
CCCAGCATGATTGGGCACGATCTCTCAAATTTCCAAATACGAAATATTTCCTCATTCTAATTTAA
GAAAACATGGATGAAATGTCAAAAAAATTTCCCATATCTTAGTCGAATGAAAAACCGAAA
Found at i:51248837 original size:22 final size:22
Alignment explanation
Indices: 51248780--51248874 Score: 75
Period size: 22 Copynumber: 4.2 Consensus size: 22
51248770 CCTAAGCTGA
* **
51248780 TGAACAATAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTAACGAGC
* *
51248802 TAAAACGGTAAGCTCTAACGAGC
1 T-GAACAGTAAGCTCTAACGAGC
* *
51248825 TGTACAGTAAGCTC-ATACGAGA
1 TGAACAGTAAGCTCTA-ACGAGC
*
51248847 TGAGAACAGTAAGCTCTTACGAGC
1 T--GAACAGTAAGCTCTAACGAGC
51248871 TGAA
1 TGAA
51248875 ATTCATTCAT
Statistics
Matches: 56, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
21 1 0.02
22 20 0.36
23 17 0.30
24 18 0.32
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAACGAGC
Found at i:51248898 original size:11 final size:11
Alignment explanation
Indices: 51248882--51248907 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51248872 GAAATTCATT
51248882 CATAACCAAGC
1 CATAACCAAGC
51248893 CATAACCAAGC
1 CATAACCAAGC
51248904 CATA
1 CATA
51248908 TCACATGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.35, G:0.08, T:0.12
Consensus pattern (11 bp):
CATAACCAAGC
Found at i:51249503 original size:43 final size:43
Alignment explanation
Indices: 51249437--51249582 Score: 142
Period size: 43 Copynumber: 3.4 Consensus size: 43
51249427 AGCTTGTACA
* *
51249437 ATGCCAAC-GTCCTAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACTGTCCTAGACAG-GGTCTTACACGAAATCAAATA-CG
51249480 ATGCC-ACTGTCCTAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAACTGTCCTAGACAGGGTCTTACACGAAATCAAATACG
* * * *
51249522 ATGCCGA-TGTCTTAGACATGGTCTTACACCTAAATCATAAGT-CG
1 ATGCCAACTGTCCTAGACAGGGTCTTACA-CGAAATCA-AA-TACG
*
51249566 ATGCCAA-TGTCCCAGAC
1 ATGCCAACTGTCCTAGAC
51249583 GTGGCCTTAC
Statistics
Matches: 89, Mismatches: 8, Indels: 11
0.82 0.07 0.10
Matches are distributed among these distances:
42 28 0.31
43 41 0.46
44 19 0.21
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACTGTCCTAGACAGGGTCTTACACGAAATCAAATACG
Found at i:51252657 original size:48 final size:48
Alignment explanation
Indices: 51252592--51252988 Score: 695
Period size: 48 Copynumber: 8.2 Consensus size: 48
51252582 GCTGAAATTG
*
51252592 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
51252640 ATGTATGAGATATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
51252690 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
51252738 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
51252786 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
51252834 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
51252882 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
51252930 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
51252978 ATGTAGGAGAT
1 ATATATGAGAT
51252989 GTGTGTATAT
Statistics
Matches: 337, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 291 0.86
50 46 0.14
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:51257479 original size:44 final size:43
Alignment explanation
Indices: 51257429--51257584 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 43
51257419 TGTGATATCG
51257429 TGTAAGACCACGTCTGGGACATTGGCATCGACT-TTTGTTTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTG-TTTACA
* ** *
51257473 TGTAAGACCATGTCTGGGACATTGGCATCG-TATCTAATTT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATAT-TTGTTTACA
* * * *
51257515 TGTAAGACC-CTGTCTGGGACAGTGGCATCAATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGTTTACA
* *
51257558 TGTAAGACTACGTCTGGGACGTTGGCA
1 TGTAAGACCACGTCTGGGACATTGGCA
51257585 GTGTATATGC
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 31 0.34
43 29 0.32
44 31 0.34
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGTTTACA
Found at i:51257530 original size:86 final size:85
Alignment explanation
Indices: 51257426--51257584 Score: 223
Period size: 86 Copynumber: 1.9 Consensus size: 85
51257416 ATATGTGATA
* * * *
51257426 TCGTGTAAGACCACGTCTGGGACATTGGCATCGACT-TTTGTTTTACATGTAAGACCATGTCTGG
1 TCGTGTAAGACCACGTCTGGGACAGTGGCATC-AATGTTTG-ATTACATGTAAGACCACGTCTGG
51257490 GACATTGGCATCGTATCTAATT
64 GACATTGGCATCGTATCTAATT
*
51257512 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCAATGTTTGATTACATGTAAGACTACGTCTGGG
1 TCGTGTAAGACCAC-GTCTGGGACAGTGGCATCAATGTTTGATTACATGTAAGACCACGTCTGGG
*
51257576 ACGTTGGCA
65 ACATTGGCA
51257585 GTGTATATGC
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
85 32 0.49
86 33 0.51
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCACGTCTGGGACAGTGGCATCAATGTTTGATTACATGTAAGACCACGTCTGGGA
CATTGGCATCGTATCTAATT
Found at i:51257532 original size:42 final size:42
Alignment explanation
Indices: 51257426--51257543 Score: 132
Period size: 44 Copynumber: 2.8 Consensus size: 42
51257416 ATATGTGATA
* **
51257426 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCGACTTTTGTTT
1 TCGTGTAAGACC-CTGTCTGGGACATTGGCATCGAC-TCTAATT
* *
51257469 TACATGTAAGACCATGTCTGGGACATTGGCATCGTA-TCTAATT
1 T-CGTGTAAGACCCTGTCTGGGACATTGGCATCG-ACTCTAATT
*
51257512 TCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 TCGTGTAAGACCCTGTCTGGGACATTGGCATC
51257544 AATGTTTGAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 28 0.44
43 6 0.09
44 29 0.45
45 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCCTGTCTGGGACATTGGCATCGACTCTAATT
Found at i:51257599 original size:85 final size:86
Alignment explanation
Indices: 51257426--51257592 Score: 216
Period size: 85 Copynumber: 2.0 Consensus size: 86
51257416 ATATGTGATA
* * * *
51257426 TCGTGTAAGACCACGTCTGGGACATTGGCATCGACTTTTGTTTTACATGTAAGACCATGTCTGGG
1 TCGTGTAAGACCACGTCTGGGACAGTGGCATCGAATTTTGTATTACATGTAAGACCACGTCTGGG
*
51257491 ACATTGGCATCGTATCTAATT
66 ACATTGGCATCGTATATAATT
*
51257512 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATC-AATGTTTG-ATTACATGTAAGACTACGTCTG
1 TCGTGTAAGACCAC-GTCTGGGACAGTGGCATCGAAT-TTTGTATTACATGTAAGACCACGTCTG
*
51257574 GGACGTTGGCAGT-GTATAT
64 GGACATTGGCA-TCGTATAT
51257593 GCTTTCGAGC
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
85 37 0.52
86 34 0.48
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (86 bp):
TCGTGTAAGACCACGTCTGGGACAGTGGCATCGAATTTTGTATTACATGTAAGACCACGTCTGGG
ACATTGGCATCGTATATAATT
Found at i:51264855 original size:22 final size:21
Alignment explanation
Indices: 51264816--51264857 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51264806 GTCTATCTTG
* *
51264816 CTTTTTTAACTTTTTCACTTC
1 CTTTTTTAACTATCTCACTTC
51264837 CTTTTTTAACTCATCTCACTT
1 CTTTTTTAACT-ATCTCACTT
51264858 AAGAATGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (21 bp):
CTTTTTTAACTATCTCACTTC
Found at i:51266844 original size:38 final size:38
Alignment explanation
Indices: 51266802--51266881 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51266792 GTTCTTATTA
* *
51266802 TGCCTGCAATTTAACCTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
* * * *
51266840 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
51266878 TGCC
1 TGCC
51266882 ATGTGTCCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
Found at i:51268264 original size:38 final size:38
Alignment explanation
Indices: 51268222--51268301 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51268212 GTTCTTATTA
* *
51268222 TGCCTGCAATTTAACCTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
* * * *
51268260 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
51268298 TGCC
1 TGCC
51268302 ATGTGTCCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
Found at i:51269682 original size:38 final size:38
Alignment explanation
Indices: 51269640--51269719 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51269630 GTTCTTATTA
* *
51269640 TGCCTGCAATTTAACCTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
* * * *
51269678 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
51269716 TGCC
1 TGCC
51269720 ATGTGTCCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
Found at i:51271102 original size:38 final size:38
Alignment explanation
Indices: 51271060--51271139 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51271050 GTTCTTATTA
* *
51271060 TGCCTGCAATTTAACCTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
* * * *
51271098 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
51271136 TGCC
1 TGCC
51271140 ATGTGTCCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
Found at i:51272522 original size:38 final size:38
Alignment explanation
Indices: 51272480--51272559 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51272470 GTTCTTATTA
* *
51272480 TGCCTGCAATTTAAACTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAAACTTTGTTAATGACAAAAGAGGGT
* * * *
51272518 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAAACTTTGTTAATGACAAAAGAGGGT
51272556 TGCC
1 TGCC
51272560 ATGTGTCCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAAACTTTGTTAATGACAAAAGAGGGT
Found at i:51273941 original size:38 final size:38
Alignment explanation
Indices: 51273899--51273978 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51273889 GTTCTTATTA
* *
51273899 TGCCTGCAATTTAACCTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
* * * *
51273937 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
51273975 TGCC
1 TGCC
51273979 ATGTGTCCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
Found at i:51275359 original size:38 final size:38
Alignment explanation
Indices: 51275317--51275396 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51275307 GTTCTTATTA
* *
51275317 TGCCTGCAATTTAACCTTTGTTGATGACAAAAGAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
* * * *
51275355 TGCCTACAGTTTAATCTTTGTTAATGATAAAATAGGGT
1 TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
51275393 TGCC
1 TGCC
51275397 ATGTGTCCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TGCCTACAATTTAACCTTTGTTAATGACAAAAGAGGGT
Found at i:51277082 original size:17 final size:16
Alignment explanation
Indices: 51277060--51277110 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
51277050 TGAACTGAGG
51277060 TAAGTTTATATGATTAA
1 TAAGTTTATATG-TTAA
51277077 TAAGTTTA-ATGTTACA
1 TAAGTTTATATGTTA-A
**
51277093 TGTGTTTATATGCTTAA
1 TAAGTTTATATG-TTAA
51277110 T
1 T
51277111 GTTACTTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
15 3 0.10
16 10 0.34
17 13 0.45
18 3 0.10
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (16 bp):
TAAGTTTATATGTTAA
Found at i:51277114 original size:24 final size:24
Alignment explanation
Indices: 51277082--51277132 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
51277072 ATTAATAAGT
51277082 TTAATGTTACATGTGTTTATATGC
1 TTAATGTTACATGTGTTTATATGC
*
51277106 TTAATGTTACTTGTGTTTATATGC
1 TTAATGTTACATGTGTTTATATGC
51277130 TTA
1 TTA
51277133 CATATTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.53
Consensus pattern (24 bp):
TTAATGTTACATGTGTTTATATGC
Found at i:51282839 original size:27 final size:28
Alignment explanation
Indices: 51282796--51282852 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
51282786 GGATGTTTCC
*
51282796 ATTGATGAATATGTATGAA-CTTTAATG
1 ATTGATGAAGATGTATGAATCTTTAATG
*
51282823 ATTGATGATAGAT-TATGAATGTTTAATG
1 ATTGATGA-AGATGTATGAATCTTTAATG
51282851 AT
1 AT
51282853 AGTTATACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (28 bp):
ATTGATGAAGATGTATGAATCTTTAATG
Found at i:51282843 original size:21 final size:20
Alignment explanation
Indices: 51282819--51282858 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51282809 TATGAACTTT
*
51282819 AATGATTGATGATAGATTATG
1 AATGATTAATGATAG-TTATG
*
51282840 AATGTTTAATGATAGTTAT
1 AATGATTAATGATAGTTAT
51282859 ACTAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (20 bp):
AATGATTAATGATAGTTATG
Found at i:51288178 original size:41 final size:40
Alignment explanation
Indices: 51288073--51288179 Score: 110
Period size: 41 Copynumber: 2.7 Consensus size: 40
51288063 AATAATTCAT
* *
51288073 CGGCATAAAGCCTGCTAGGCCT-AAGCTTGTATTACACAC
1 CGGCACAAAGCCTGCTAGGCATAAAGCTTGTATTACACAC
* * * * * *
51288112 CGGCACAAGGCCTGCTAGACTTAAAGTTTGATTTTATACAC
1 CGGCACAAAGCCTGCTAGGCATAAAGCTTG-TATTACACAC
51288153 CGGCA-ATAAGCCTGCTAGGCATAAAGC
1 CGGCACA-AAGCCTGCTAGGCATAAAGC
51288180 CGGGTTTAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
39 18 0.33
40 7 0.13
41 29 0.54
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
CGGCACAAAGCCTGCTAGGCATAAAGCTTGTATTACACAC
Found at i:51290633 original size:126 final size:126
Alignment explanation
Indices: 51290387--51290694 Score: 410
Period size: 126 Copynumber: 2.5 Consensus size: 126
51290377 AACATAAGGA
* * * *
51290387 AATATTTCGTGTTT-GAGAGTTCGAGAGGTCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTC
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTC
* * *
51290451 AACTAAAATACGAAATATCCTTTGGAAATTTCATCCATGCTTTTTGAAATTGAAATGAGGT
66 AACTAAAATACGAAATATCCTTTGAAAATTTCATCCATGCTTTTTGAAATTAAAATGAGGC
*
51290512 AATATTTCGTATTTGGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTC
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTC
* *
51290577 AACTAAAATAC-AGGATATCCTTTTAAAATTTCATCCATG-TTTCCTT-AAATTAAAATGAGGC
66 AACTAAAATACGA-AATATCCTTTGAAAATTTCATCCATGCTTT--TTGAAATTAAAATGAGGC
** ** * *
51290638 AATATTTCGTATTTGGCCA-AATGACAAATCGTGCCCAATCGTGCTGGGTTTCGATTT
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTT
51290695 ACCGTTTGGC
Statistics
Matches: 163, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
125 51 0.31
126 110 0.67
127 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (126 bp):
AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTC
AACTAAAATACGAAATATCCTTTGAAAATTTCATCCATGCTTTTTGAAATTAAAATGAGGC
Found at i:51290732 original size:126 final size:126
Alignment explanation
Indices: 51290415--51290735 Score: 391
Period size: 126 Copynumber: 2.5 Consensus size: 126
51290405 GTTCGAGAGG
* *
51290415 TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAACTAAAATACGAAATATCCTTTGGAAAT
1 TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAACTAAAATACCAAATATCCTTTTGAAAT
* * ** ** * *
51290480 TTCATCCATGCTTTTTGAAATTGAAATGAGGTAATATTTCGTATTTGGGGAGTTTGAGAGA
66 TTCATCCATGCTTTTTGAAATTAAAATGAGGCAATATTTCGTATTTGGCCAGAATGACAAA
* * *
51290541 TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCAACTAAAATA-CAGGATATCCTTTTAAAA
1 TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAACTAAAATACCA-AATATCCTTTTGAAA
51290605 TTTCATCCATG-TTTCCTT-AAATTAAAATGAGGCAATATTTCGTATTTGGCCA-AATGACAAA
65 TTTCATCCATGCTTT--TTGAAATTAAAATGAGGCAATATTTCGTATTTGGCCAGAATGACAAA
** *** *
51290666 TCGTGCCCAATCGTGCTGGGTTTCGATTTACCGTTTGGC-CAAATAGCCAAATATCCTTTTTGAA
1 TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAACTAAAATA-CCAAATATCC-TTTTGAA
51290730 ATTTCA
64 ATTTCA
51290736 AATGTATGAG
Statistics
Matches: 167, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
124 5 0.03
125 48 0.29
126 112 0.67
127 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (126 bp):
TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAACTAAAATACCAAATATCCTTTTGAAAT
TTCATCCATGCTTTTTGAAATTAAAATGAGGCAATATTTCGTATTTGGCCAGAATGACAAA
Found at i:51299548 original size:25 final size:25
Alignment explanation
Indices: 51299519--51299597 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
51299509 TCAATGGCCG
51299519 ATGTGATGAATGTGAAAGTGTATAC
1 ATGTGATGAATGTGAAAGTGTATAC
* *** **
51299544 ATGTGAT-AAGGCCTAA-TG--GCC
1 ATGTGATGAATGTGAAAGTGTATAC
51299565 GATGTGATGAATGTGAAAGTGTATAC
1 -ATGTGATGAATGTGAAAGTGTATAC
51299591 ATGTGAT
1 ATGTGAT
51299598 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
21 1 0.03
22 7 0.19
23 7 0.19
24 7 0.19
25 14 0.38
26 1 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAC
Found at i:51299565 original size:47 final size:47
Alignment explanation
Indices: 51299511--51300171 Score: 915
Period size: 49 Copynumber: 13.9 Consensus size: 47
51299501 TGAATTATTC
* *
51299511 AATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
51299558 AATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
51299605 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
51299654 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
51299703 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
51299752 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
51299801 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
* *
51299850 AATGGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
51299897 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATA--TGTGATAAGGCCT
* * *
51299946 AATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCT
* * *
51299993 AATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCT
* *
51300040 AATGGCCAATGTGATGAATGTGAACA-TG--CATA--T-ATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCT
* *
51300082 AATGGCCAATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
51300129 AATGGCCAATGTGATGGATGTGGAAGTGTATAAATGTGATAAG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51300172 TCCCGAAGGG
Statistics
Matches: 586, Mismatches: 17, Indels: 22
0.94 0.03 0.04
Matches are distributed among these distances:
42 35 0.06
43 1 0.00
44 3 0.01
45 2 0.00
46 1 0.00
47 261 0.45
49 282 0.48
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
Found at i:51300005 original size:38 final size:39
Alignment explanation
Indices: 51299962--51300053 Score: 105
Period size: 47 Copynumber: 2.2 Consensus size: 39
51299952 CAATGTGATG
51299962 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGA
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC------A
51300007 TGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC-
1 --AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
51300047 AATGTGA
1 AATGTGA
51300054 TGAATGTGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
38 7 0.16
47 38 0.84
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.27
Consensus pattern (39 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
Found at i:51300364 original size:37 final size:37
Alignment explanation
Indices: 51300290--51300368 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
51300280 CCGAGCTCTA
* * * *
51300290 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTCTGGAGATTATGTCCGGGT
* *
51300327 AAGACCCGATAACTTCGTCTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTCTGGAGATTATGTCCGGGT
51300364 AAGAC
1 AAGAC
51300369 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTCTGGAGATTATGTCCGGGT
Found at i:51302051 original size:27 final size:27
Alignment explanation
Indices: 51302010--51302065 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
51302000 ATCTCATATC
* * *
51302010 TGTAGGCTAGTATTACTGAAATGCCCT
1 TGTAGGCTAGAATTACTAAAATACCCT
*
51302037 TGTAGGGTAGAATTACTAAAATACCCT
1 TGTAGGCTAGAATTACTAAAATACCCT
51302064 TG
1 TG
51302066 ATTTACAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (27 bp):
TGTAGGCTAGAATTACTAAAATACCCT
Found at i:51302077 original size:27 final size:27
Alignment explanation
Indices: 51302047--51302362 Score: 193
Period size: 27 Copynumber: 11.7 Consensus size: 27
51302037 TGTAGGGTAG
*
51302047 AATTACTAAAATACCCTTGATTTACAA
1 AATTACTAAAATACCCTTGATTTATAA
* *
51302074 AATTA-TTAAATACCCTTGGTTTATAA
1 AATTACTAAAATACCCTTGATTTATAA
* * *
51302100 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACTAAAATACCCTTGA-TTTATAA
* *
51302127 AATTACCAAAATACACC-TGATTTATGA
1 AATTACTAAAATAC-CCTTGATTTATAA
* *
51302154 AATTA-TCGAAATA-CCTTCGATTTGTAA
1 AATTACT-AAAATACCCTT-GATTTATAA
* * ***
51302181 AATTACCAAAATACCCATGATTTGGGA
1 AATTACTAAAATACCCTTGATTTATAA
* * **
51302208 AATTACCAAAATACCATTGATTTGGAA
1 AATTACTAAAATACCCTTGATTTATAA
*
51302235 AATTAC-AGAAATACCTTTGATTTATAA
1 AATTACTA-AAATACCCTTGATTTATAA
51302262 AATTA-TAGAAATACCCTTGACTTT-TAAA
1 AATTACTA-AAATACCCTTGA-TTTAT-AA
* * **
51302290 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACTA-AAATACCCTTGATTTATAA
* * * *
51302317 AATTA-TCGAAATACCCTTGGTTTGTAG
1 AATTACT-AAAATACCCTTGATTTATAA
* * *
51302344 ATTTACCAAAACACCCTTG
1 AATTACTAAAATACCCTTG
51302363 TAAGGTGAAA
Statistics
Matches: 236, Mismatches: 37, Indels: 32
0.77 0.12 0.10
Matches are distributed among these distances:
25 2 0.01
26 25 0.11
27 180 0.76
28 29 0.12
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGATTTATAA
Found at i:51302360 original size:82 final size:81
Alignment explanation
Indices: 51302047--51302362 Score: 286
Period size: 81 Copynumber: 3.9 Consensus size: 81
51302037 TGTAGGGTAG
* * * * * *
51302047 AATTACTAAAATACCCTTGATTTACAAAATTAT-TAAATACCCTTGGTTTATAAAATTACCAAAA
1 AATTACCAAAATACCATTGATTTGCAAAATTATCGAAATACCCTTGATTTGTAAAATTACCAAAA
* *
51302111 TACCCCT-AGTTTGTAA
66 TACCCTTGA-TTTGAAA
* ***
51302127 AATTACCAAAATA-CACCTGATTTATGAAATTATCGAAATA-CCTTCGATTTGTAAAATTACCAA
1 AATTACCAAAATACCA-TTGATTTGCAAAATTATCGAAATACCCTT-GATTTGTAAAATTACCAA
* **
51302190 AATACCCATGATTTGGGA
64 AATACCCTTGATTTGAAA
* * * *
51302208 AATTACCAAAATACCATTGATTTGGAAAATTA-CAGAAATACCTTTGATTTATAAAATTA-TAGA
1 AATTACCAAAATACCATTGATTTGCAAAATTATC-GAAATACCCTTGATTTGTAAAATTACCA-A
*
51302271 AATACCCTTGACTTTTAAA
64 AATACCCTTGA-TTTGAAA
* * * * *
51302290 AATTA-TAGAAATACCATTGGTTTGCAAAATTATCGAAATACCCTTGGTTTGTAGATTTACCAAA
1 AATTACCA-AAATACCATTGATTTGCAAAATTATCGAAATACCCTTGATTTGTAAAATTACCAAA
*
51302354 ACACCCTTG
65 ATACCCTTG
51302363 TAAGGTGAAA
Statistics
Matches: 192, Mismatches: 32, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
79 1 0.01
80 32 0.17
81 90 0.47
82 67 0.35
83 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (81 bp):
AATTACCAAAATACCATTGATTTGCAAAATTATCGAAATACCCTTGATTTGTAAAATTACCAAAA
TACCCTTGATTTGAAA
Found at i:51302834 original size:22 final size:22
Alignment explanation
Indices: 51302782--51302846 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
51302772 TCCAATTATT
* *
51302782 TTGATTATGGCTTTACGCCAAC
1 TTGATTATGGCTATATGCCAAC
* * *
51302804 CT-ACATATGGCTCTATGCCAAC
1 TTGA-TTATGGCTATATGCCAAC
*
51302826 TTGATTATGGCTATGTGCCAA
1 TTGATTATGGCTATATGCCAA
51302847 ACATATTTTC
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (22 bp):
TTGATTATGGCTATATGCCAAC
Found at i:51303007 original size:32 final size:32
Alignment explanation
Indices: 51302945--51303016 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
51302935 TACTCTAGTT
* * *
51302945 GATGGCTATGTGCCTAACATAATACAGTTACC
1 GATGGCTTTGTGCCTAAAATAAGACAGTTACC
* *
51302977 GATGGCTTTGTGCC-AATAATAAGACCGTTACT
1 GATGGCTTTGTGCCTAA-AATAAGACAGTTACC
*
51303009 GAAGGCTT
1 GATGGCTT
51303017 AAAGTCGTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 2 0.06
32 31 0.94
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (32 bp):
GATGGCTTTGTGCCTAAAATAAGACAGTTACC
Found at i:51306476 original size:39 final size:39
Alignment explanation
Indices: 51306397--51306497 Score: 114
Period size: 39 Copynumber: 2.6 Consensus size: 39
51306387 TTGATGTAAT
* **
51306397 TCCGGACTTAAGGTCTGCAGGCTATGTGCTAGAATTATA
1 TCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAAAAATA
*
51306436 TCCGGACTTAAGGTCCGCAGGCTACT-TGCTGGAAAAATA
1 TCCGGACTTAAGGTCCGCAGGCTA-TGTGCTAGAAAAATA
* * * *
51306475 TCTGGACTAAAGTTCCGTAGGCT
1 TCCGGACTTAAGGTCCGCAGGCT
51306498 TCGAGCTGGT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 52 0.98
40 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (39 bp):
TCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAAAAATA
Found at i:51307268 original size:30 final size:30
Alignment explanation
Indices: 51307232--51307291 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
51307222 GTAGGCTGAG
51307232 TATACACTCAATGGTATTTCTATAATCTAA
1 TATACACTCAATGGTATTTCTATAATCTAA
51307262 TATACACTCAATGGTATTTCTATAATCTAA
1 TATACACTCAATGGTATTTCTATAATCTAA
51307292 ACACTTAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (30 bp):
TATACACTCAATGGTATTTCTATAATCTAA
Found at i:51307490 original size:18 final size:18
Alignment explanation
Indices: 51307469--51307603 Score: 74
Period size: 18 Copynumber: 7.3 Consensus size: 18
51307459 GAACAATTAT
*
51307469 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAA
* *
51307487 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAA
* * ** *
51307505 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAA
* ***
51307523 TTATTCAGTATCAATTGATTGG
1 TTATTCAGTAAC-A--G-TCAA
*
51307545 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
51307563 TTATTC-GATAACAGTCAA
1 TTATTCAG-TAACAGTCAA
* * *
51307581 TTATTCAGAAATAATCAA
1 TTATTCAGTAACAGTCAA
51307599 TTATT
1 TTATT
51307604 TTATACCTTT
Statistics
Matches: 87, Mismatches: 24, Indels: 12
0.71 0.20 0.10
Matches are distributed among these distances:
17 1 0.01
18 71 0.82
19 3 0.03
21 1 0.01
22 11 0.13
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:51307509 original size:36 final size:36
Alignment explanation
Indices: 51307460--51307588 Score: 96
Period size: 36 Copynumber: 3.5 Consensus size: 36
51307450 TAACAATCAG
* *
51307460 AACAATTATTTATTCAGTAACAGTCAGTTATTCGGT
1 AACAATCAATTATTCAGTAACAGTCAGTTATTCGGT
* * ** *
51307496 AACAATCAATTATTCAATAATAACCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAGTCAGTTATTCGGT
* * * * * *
51307532 ATCAATTGATTGGTTATCCAGTAACAGTCAATTATTCGAT
1 AACAA-TCA---ATTATTCAGTAACAGTCAGTTATTCGGT
*
51307572 AACAGTCAATTATTCAG
1 AACAATCAATTATTCAG
51307589 AAATAATCAA
Statistics
Matches: 66, Mismatches: 23, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
36 40 0.61
37 2 0.03
39 2 0.03
40 22 0.33
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.36
Consensus pattern (36 bp):
AACAATCAATTATTCAGTAACAGTCAGTTATTCGGT
Found at i:51307833 original size:45 final size:45
Alignment explanation
Indices: 51307773--51307881 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 45
51307763 CCGAAACAGA
* *
51307773 AACAGTAACAATAACAGTATTCAACACACAAAGTGCTGAATCGAT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCAGAATCGAT
* * *
51307818 AACGGTAACAGTAACAGTATTCGACACACAAAGTGCAGAATCGGT
1 AACAGTAACAGTAACAGTATTCAACACACAAAGTGCAGAATCGAT
*
51307863 AACAGTAACGGTAACAGTA
1 AACAGTAACAGTAACAGTA
51307882 ACAGTAGTCG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.18
Consensus pattern (45 bp):
AACAGTAACAGTAACAGTATTCAACACACAAAGTGCAGAATCGAT
Done.