Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 159 of 290
Found at i:51307876 original size:12 final size:12
Alignment explanation
Indices: 51307859--51307883 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51307849 AGTGCAGAAT
51307859 CGGTAACAGTAA
1 CGGTAACAGTAA
51307871 CGGTAACAGTAA
1 CGGTAACAGTAA
51307883 C
1 C
51307884 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:51309647 original size:13 final size:13
Alignment explanation
Indices: 51309629--51309653 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51309619 CATTTCTTTT
51309629 ATTTCTTTATTTC
1 ATTTCTTTATTTC
51309642 ATTTCTTTATTT
1 ATTTCTTTATTT
51309654 TATTATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTCTTTATTTC
Found at i:51312164 original size:20 final size:20
Alignment explanation
Indices: 51312139--51312184 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 20
51312129 TACGGGGAAT
51312139 GCTAGTGGCAGTCAGAGAGG
1 GCTAGTGGCAGTCAGAGAGG
51312159 GCTAGTGGCAGTCAGAGAGG
1 GCTAGTGGCAGTCAGAGAGG
51312179 GTCTAG
1 G-CTAG
51312185 AGATGCTACG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.24, C:0.15, G:0.43, T:0.17
Consensus pattern (20 bp):
GCTAGTGGCAGTCAGAGAGG
Found at i:51317809 original size:39 final size:39
Alignment explanation
Indices: 51317750--51317889 Score: 210
Period size: 39 Copynumber: 3.6 Consensus size: 39
51317740 TTGATGCGAT
*
51317750 TCCGGACTTAAGGTCTGCAGGCTATGTGCTGGAATTATA
1 TCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATA
*
51317789 TCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTATA
1 TCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATA
*
51317828 TCCGGACTTAAGGTCCGCAGGCTACT-TGCTGGAAATATA
1 TCCGGACTTAAGGTCCGCAGGCTA-TGTGCTGGAATTATA
* * *
51317867 TCTGGACTAAAGTTCCGCAGGCT
1 TCCGGACTTAAGGTCCGCAGGCT
51317890 TCGAGCTGGT
Statistics
Matches: 93, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 92 0.99
40 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.28
Consensus pattern (39 bp):
TCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATA
Found at i:51324539 original size:47 final size:47
Alignment explanation
Indices: 51324488--51324757 Score: 407
Period size: 47 Copynumber: 5.7 Consensus size: 47
51324478 TTAGGATTCT
* * *
51324488 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
51324535 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51324582 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
51324629 ATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
51324676 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
51324723 ACGTGATGGATGTGAAAGTGTGTAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51324758 TCCCGAAGGG
Statistics
Matches: 206, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 205 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51324563 original size:25 final size:25
Alignment explanation
Indices: 51324535--51324613 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
51324525 CTAATGGCCG
51324535 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
51324560 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
51324582 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
51324607 ATGTGAT
1 ATGTGAT
51324614 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:51324932 original size:37 final size:37
Alignment explanation
Indices: 51324876--51324954 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51324866 CCGAGCTCTA
* *
51324876 AAGACCCGATGACTACGTGTAGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGT-GGAGATTATGTCCGGGT
*
51324913 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51324950 AAGAC
1 AAGAC
51324955 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51327602 original size:34 final size:36
Alignment explanation
Indices: 51327563--51327645 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 36
51327553 GCCCACACGC
*
51327563 CCGTGTGG-C-CCACATAGCCTAGAAATGGCCTTGG
1 CCGTGTGGACACCACATAGCCCAGAAATGGCCTTGG
51327597 CCGTGTGGATTACATCCACATAGCCCAGAAATGGCCTTGG
1 CCGTGTGG---ACA-CCACATAGCCCAGAAATGGCCTTGG
*
51327637 CCATGTGGA
1 CCGTGTGGA
51327646 TTACATAGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
34 8 0.20
37 1 0.02
38 1 0.02
40 31 0.76
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (36 bp):
CCGTGTGGACACCACATAGCCCAGAAATGGCCTTGG
Found at i:51327627 original size:40 final size:40
Alignment explanation
Indices: 51327572--51327651 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
51327562 CCCGTGTGGC
* *
51327572 CCACATAGCCTAGAAATGGCCTTGGCCGTGTGGATTACAT
1 CCACATAGCCCAGAAATGGCCTTGGCCATGTGGATTACAT
51327612 CCACATAGCCCAGAAATGGCCTTGGCCATGTGGATTACAT
1 CCACATAGCCCAGAAATGGCCTTGGCCATGTGGATTACAT
51327652 AGCTTGGCCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
CCACATAGCCCAGAAATGGCCTTGGCCATGTGGATTACAT
Found at i:51335452 original size:28 final size:29
Alignment explanation
Indices: 51335400--51335459 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
51335390 GATGGGCAAC
* *
51335400 ATGAATGTGATTTGGGCCTAATAGGCCAT
1 ATGAATGAGATTTGGGCCTAATAGGACAT
*
51335429 ATGAATGAGA-TTGGGCCTAGTAGGACAT
1 ATGAATGAGATTTGGGCCTAATAGGACAT
51335457 ATG
1 ATG
51335460 CATGTATGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (29 bp):
ATGAATGAGATTTGGGCCTAATAGGACAT
Found at i:51338428 original size:4 final size:4
Alignment explanation
Indices: 51338419--51338454 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
51338409 AGGTTTGTAT
51338419 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
51338455 GTATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:51339637 original size:28 final size:29
Alignment explanation
Indices: 51339576--51339644 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
51339566 TTCAGGCCAC
*
51339576 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
51339605 ATGGGCCATATGACTGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
51339633 GTGGGCCATATG
1 ATGGGCCATATG
51339645 CATGTATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:51340572 original size:40 final size:39
Alignment explanation
Indices: 51340495--51340580 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
51340485 TAACGACTTA
* **
51340495 TCGGCTGAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
51340534 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
*
51340574 TCCGCTA
1 TCGGCTA
51340581 TATATATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 9 0.23
40 30 0.77
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:51343901 original size:49 final size:48
Alignment explanation
Indices: 51343845--51344303 Score: 696
Period size: 49 Copynumber: 9.6 Consensus size: 48
51343835 TATTTGAATA
51343845 AATGTGAAAGTGTATATGTATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATAT-TATGTGATAAGGCCGAATGGCCAATGTGATG
51343894 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATAT-TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51343943 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATAT-TATGTGATAAGGCCGAATGGCCAATGTGATG
51343992 AATGTGAAAGTGTATA-TATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATTATGTGATAAGGCCGAATGGCCAATGTGATG
51344039 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATAT-TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51344088 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATAT-TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
51344137 AATGTGAAAGTGTATA-TATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATTATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51344184 AATGTGAAAGTGTATA-TATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATTATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
51344231 AATGTGAAAGTGTATA-TATGTGA-CAGGGCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATTATGTGATAAGGCCGAATGGCCAATGTGATG
* *
51344277 GATGTGAAAGTGTATA-AATGTGATAAG
1 AATGTGAAAGTGTATATTATGTGATAAG
51344304 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 38 0.10
47 146 0.38
49 205 0.53
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (48 bp):
AATGTGAAAGTGTATATTATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:51344024 original size:145 final size:145
Alignment explanation
Indices: 51343845--51344303 Score: 748
Period size: 145 Copynumber: 3.2 Consensus size: 145
51343835 TATTTGAATA
51343845 AATGTGAAAGTGTATATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATA--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
51343910 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
51343975 TAATGGCCGATGTGATG
129 TAATGGCCGATGTGATG
51343992 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
51344057 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
51344122 ATGGCCGATGTGATG
131 ATGGCCGATGTGATG
* * *
51344137 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * *
51344200 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA-CAGGGCGA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
* * *
51344262 GTGGCCAACGTGATG
131 ATGGCCGATGTGATG
* *
51344277 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
51344304 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 13, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
140 42 0.14
141 11 0.04
143 45 0.15
145 185 0.62
147 16 0.05
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (145 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATG
Found at i:51346936 original size:43 final size:42
Alignment explanation
Indices: 51346888--51346980 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
51346878 CTAGATGTTT
* * *
51346888 TCTTACATGTAATCAAATATCGTTG-CCACTGTCCCAGACAGGG
1 TCTTACACGAAATCAAATA-CGATGTCCA-TGTCCCAGACAGGG
* * *
51346931 TCTTACACGAAATCATATACGATGTCGATGTCCCAGACATGG
1 TCTTACACGAAATCAAATACGATGTCCATGTCCCAGACAGGG
51346973 TCTTACAC
1 TCTTACAC
51346981 TTAAATCTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
TCTTACACGAAATCAAATACGATGTCCATGTCCCAGACAGGG
Found at i:51348132 original size:13 final size:13
Alignment explanation
Indices: 51348114--51348140 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51348104 CACAAACGAT
51348114 AAAATTTTCACAC
1 AAAATTTTCACAC
51348127 AAAATTTTCACAC
1 AAAATTTTCACAC
51348140 A
1 A
51348141 TATTAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:51349586 original size:16 final size:18
Alignment explanation
Indices: 51349561--51349601 Score: 61
Period size: 16 Copynumber: 2.4 Consensus size: 18
51349551 AAACCATAAA
51349561 ATTA-TTATTTTT-AAAT
1 ATTATTTATTTTTGAAAT
51349577 ATT-TTTATTTTTGAAAT
1 ATTATTTATTTTTGAAAT
51349594 ATTATTTA
1 ATTATTTA
51349602 CCCATTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 11 0.50
17 7 0.32
18 4 0.18
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTATTTATTTTTGAAAT
Found at i:51351468 original size:43 final size:43
Alignment explanation
Indices: 51351421--51351515 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
51351411 TAGCCCAATT
* * *
51351421 ATGGTCTTACACAAAATCAAATAACGATGCCAATGTCTCAGAC
1 ATGGTCTTACACAAAATCAAATAACAATGACAATGTCCCAGAC
* ** * *
51351464 ATGGTTTTACACGTAATCACATAATAATGACAATGTCCCAGAC
1 ATGGTCTTACACAAAATCAAATAACAATGACAATGTCCCAGAC
51351507 ATGGTCTTA
1 ATGGTCTTA
51351516 TAGATAATCA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCAAATAACAATGACAATGTCCCAGAC
Found at i:51355637 original size:40 final size:39
Alignment explanation
Indices: 51355553--51355737 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
51355543 TTGAATGATG
* * * *
51355553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51355593 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51355633 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
51355672 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51355713 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
51355738 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 36 0.29
40 79 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51355688 original size:79 final size:81
Alignment explanation
Indices: 51355553--51355735 Score: 239
Period size: 79 Copynumber: 2.3 Consensus size: 81
51355543 TTGAATGATG
* *
51355553 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51355617 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * ** *
51355632 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAGTTCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAT
51355695 TTGTGCGAGTTACTATA
65 TTGTGCGAGTTACTATA
* *
51355712 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51355736 TGAACGAGGA
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 60 0.67
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:51355759 original size:79 final size:78
Alignment explanation
Indices: 51355583--51355770 Score: 218
Period size: 79 Copynumber: 2.4 Consensus size: 78
51355573 CTTTGTGCTA
* * * *
51355583 AGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCG
1 AGTGACTATATCCGG-TTAAGTTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCG
**
51355648 AAGGCATTGGTGCG
65 AAGGCATTGGAACG
* * *
51355662 AGTTACTAAATCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCC
1 AGTGACTATATCC-GGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CC
*
51355726 CGAAGGCATTTGAACG
63 CGAAGGCATTGGAACG
*
51355742 AG-GAGCTATATCCGGTTAAATTCCGAAGG
1 AGTGA-CTATATCCGGTTAAGTTCCGAAGG
51355771 TACGTCATTT
Statistics
Matches: 92, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 64 0.70
80 26 0.28
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
AGTGACTATATCCGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGA
AGGCATTGGAACG
Found at i:51361299 original size:27 final size:27
Alignment explanation
Indices: 51361242--51361314 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
51361232 ATCAGTCATT
* *
51361242 GAAGGGCCAAACAGTCA-TTTACCCTA
1 GAAGGGCAAAATAGTCATTTTACCCTA
51361268 GAAGGGCAAAATAGTCATTTTACCAC-A
1 GAAGGGCAAAATAGTCATTTTACC-CTA
* *
51361295 TAAGGGAAAAATAGTCATTT
1 GAAGGGCAAAATAGTCATTT
51361315 ATCAATTTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 15 0.37
27 25 0.61
28 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (27 bp):
GAAGGGCAAAATAGTCATTTTACCCTA
Found at i:51365327 original size:17 final size:19
Alignment explanation
Indices: 51365288--51365327 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
51365278 CATAATGTGG
*
51365288 GCCCATGTGGGCCCATACA
1 GCCCATGTGGGCCCACACA
51365307 -CCCATGT-GGCCCACA-A
1 GCCCATGTGGGCCCACACA
51365323 GCCCA
1 GCCCA
51365328 AATTTGGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
16 1 0.05
17 11 0.58
18 7 0.37
ACGTcount: A:0.23, C:0.42, G:0.23, T:0.12
Consensus pattern (19 bp):
GCCCATGTGGGCCCACACA
Found at i:51374073 original size:40 final size:40
Alignment explanation
Indices: 51373979--51374203 Score: 208
Period size: 40 Copynumber: 5.6 Consensus size: 40
51373969 TATTCGAATG
* * *
51373979 ATATCCGGGCTAAG-TCCCGAAGTCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * *
51374020 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
*
51374060 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGCGACT
* *
51374100 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * * * *
51374140 ATATCCGGTCTACG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
*
51374180 ACATCCGGGCTAAGA-CCTGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
51374204 CTTGCGCAAG
Statistics
Matches: 152, Mismatches: 24, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
39 4 0.03
40 118 0.78
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:51374161 original size:80 final size:80
Alignment explanation
Indices: 51373979--51374239 Score: 258
Period size: 80 Copynumber: 3.3 Consensus size: 80
51373969 TATTCGAATG
* * * * *
51373979 ATATCCGGGCTAAGTCCCGAAGTCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
51374044 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
51374060 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
51374125 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * * * *
51374140 ATATCCGGTCTACGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCTGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
51374205 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
51374219 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
51374240 ATTACTTGAG
Statistics
Matches: 146, Mismatches: 32, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
78 12 0.08
79 13 0.09
80 91 0.62
81 30 0.21
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:51374193 original size:120 final size:121
Alignment explanation
Indices: 51373979--51374203 Score: 278
Period size: 120 Copynumber: 1.9 Consensus size: 121
51373969 TATTCGAATG
** * * *
51373979 ATATCCGGGCTAAGTCCCGAAGTCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * *
51374044 ATTCGTGCGAGTTGCTATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCT-GAAGGCATTTGTGCTAGCGATT
* * *
51374100 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGTCTACG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
51374163 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCTGAAGGC
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCTGAAGGC
51374204 CTTGCGCAAG
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
119 3 0.03
120 53 0.60
121 32 0.36
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCTGAAGGCATTTGTGCTAGCGATT
Found at i:51382279 original size:40 final size:40
Alignment explanation
Indices: 51382185--51382409 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
51382175 TATTCGAATG
* *
51382185 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
51382226 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
51382266 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
51382306 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
51382346 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
51382386 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
51382410 CTTGCGCAAG
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:51382365 original size:80 final size:80
Alignment explanation
Indices: 51382185--51382445 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
51382175 TATTCGAATG
* * * *
51382185 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
51382250 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
51382266 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
51382331 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
51382346 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
51382411 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
51382425 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
51382446 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.08
80 95 0.62
81 32 0.21
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:51395661 original size:28 final size:28
Alignment explanation
Indices: 51395621--51395685 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
51395611 ATGTACTAGA
*
51395621 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
51395649 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
51395677 ATACCCCTA
1 ATACCCCTA
51395686 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:51395849 original size:27 final size:27
Alignment explanation
Indices: 51395791--51395880 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
51395781 AGGAAGCGTC
51395791 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
51395819 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
51395846 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
51395875 CTGGTG
1 CTGGTG
51395881 ACTCAGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:51395891 original size:29 final size:28
Alignment explanation
Indices: 51395802--51395891 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 28
51395792 TGGTGGCTAT
* * * *
51395802 GCCACAAATTATCTGTTCTGGTGGCCCT
1 GCCACAAAATATCTGTTCTGGTGACACA
* * *
51395830 GCCAC-ATATATCTGTTCTGGTGGCACT
1 GCCACAAAATATCTGTTCTGGTGACACA
*
51395857 GCCACAAAATATCTGTATCTGGTGACTCA
1 GCCACAAAATATCTGT-TCTGGTGACACA
*
51395886 GTCACA
1 GCCACA
51395892 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
27 24 0.46
28 14 0.27
29 14 0.27
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (28 bp):
GCCACAAAATATCTGTTCTGGTGACACA
Found at i:51395899 original size:55 final size:56
Alignment explanation
Indices: 51395791--51395905 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
51395781 AGGAAGCGTC
* * *
51395791 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCAGCCACATATATCTGTAT
* * *
51395846 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCAGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCAGCCACATATATCTGTAT
51395902 CTGG
1 CTGG
51395906 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCAGCCACATATATCTGTAT
Found at i:51396369 original size:19 final size:19
Alignment explanation
Indices: 51396345--51396383 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
51396335 TTTTAATTAT
* *
51396345 TTTTATTGTTTTGTTTTAC
1 TTTTATTATTTTATTTTAC
51396364 TTTTATTATTTTATTTTAC
1 TTTTATTATTTTATTTTAC
51396383 T
1 T
51396384 ATGATGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (19 bp):
TTTTATTATTTTATTTTAC
Found at i:51397558 original size:43 final size:43
Alignment explanation
Indices: 51397412--51397562 Score: 141
Period size: 43 Copynumber: 3.5 Consensus size: 43
51397402 TATCCCAAAT
** * *
51397412 ATGGTCTTACATGTTATCACAT-ATCGATGCTGATAG-CCCA-AC
1 ATGGTCTTACACATAATCACATAAT-GATGCTAAT-GTCCCAGAC
* * *
51397454 TATGGTCTTACATGA-AATCAAATAACT-ATGCCAATGTCCCAGAC
1 -ATGGTCTTACA-CATAATCACATAA-TGATGCTAATGTCCCAGAC
* *
51397498 ATGGTTTTACACGTAATCACATAATGATGCTAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAATGATGCTAATGTCCCAGAC
51397541 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
51397563 CTCATTAATC
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.02
43 82 0.93
44 3 0.03
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAATGATGCTAATGTCCCAGAC
Found at i:51400975 original size:42 final size:42
Alignment explanation
Indices: 51400852--51400975 Score: 160
Period size: 42 Copynumber: 2.9 Consensus size: 42
51400842 AGTATCGTAC
* *
51400852 CAATGCCATATCCCATATATGGTCTTACATGTAATCTCATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCATAT
* * * *
51400894 CAATGCCAAAAGCCTAGGTATGGTCTTACACG-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATAT
*
51400937 CGATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
51400976 GTAACCCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGTAATCTCATAT
Found at i:51404448 original size:13 final size:13
Alignment explanation
Indices: 51404430--51404461 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
51404420 TCATACACAA
51404430 CCGTGTCCCTAAC
1 CCGTGTCCCTAAC
51404443 CCGTGTCCCTAAC
1 CCGTGTCCCTAAC
51404456 CCGTGT
1 CCGTGT
51404462 AATTCTCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.44, G:0.19, T:0.25
Consensus pattern (13 bp):
CCGTGTCCCTAAC
Found at i:51405016 original size:310 final size:314
Alignment explanation
Indices: 51404441--51405021 Score: 884
Period size: 310 Copynumber: 1.8 Consensus size: 314
51404431 CGTGTCCCTA
51404441 ACCCGTGTCCCTAACCCGTGTAATTCTCTATTTTGCAAAGCATGAACAAATTGAAGCCACATGGC
1 ACCCGTGTCCCTAACCCGTGTAATTCTCTATTTTGCAAAGCATGAACAAATT--------ATGG-
*
51404506 CAAGTCACACCCCCGTGTGCTAGACTGCATGGTTAATTTAATTTTCATAAAATAGGTGCAGACTT
57 CAAGTCACACCCCCGTGTCCTAGACTGCATGGTTAATTTAATTTTCATAAAATAGGTGCAGACTT
* *
51404571 CACACGGTCGGGACACACGCCCGTACTTGAGACCGTGTCCCTCAACGGTTGAGACACACACTCGT
122 CACACAGTCGGGACACACGCCCGTACTTGAGACCGTGTCCCTCAACGGCTGAGACACACACTCGT
* * *
51404636 GTCTCTGCCCGTGTGGTCAATTCTGAGCATTCTCTTTCTCAAAATTAAGGTGCAGTGGACACACG
187 GTCTCTACCCATGTGGTCAATTCTGAGCATTCTCTTTCTCAAAATTAAGGTGCAGGGGACACACG
51404701 GCTGAAACACACGTTCATATGGTTTGGGACACGCCTGTATGGGTAGCCCGTGTGGTCACACAC
252 GCTGAAACACACGTTCATATGGTTTGGGACACGCCTGTATGGGTAGCCCGTGTGGTCACACAC
51404764 ACCCGTGTCCCTAACCCGTGTAATTCTCTATTTTGCAAAGCATGAACAAA-T-T-G-AAGTCACA
1 ACCCGTGTCCCTAACCCGTGTAATTCTCTATTTTGCAAAGCATGAACAAATTATGGCAAGTCACA
* * * * * *
51404825 CGCTCTTGTCCTAGACTGCATGGTTAATTTAATTTTCATAAAATAGGTGTAGACTTCATATAGTC
66 CCCCCGTGTCCTAGACTGCATGGTTAATTTAATTTTCATAAAATAGGTGCAGACTTCACACAGTC
* * *
51404890 GGGACACACGCCTGTACTTGAGACTGTGTCCCTCAACGGCTGAGACACACGC-CTGTGTCTCTAC
131 GGGACACACGCCCGTACTTGAGACCGTGTCCCTCAACGGCTGAGACACACACTC-GTGTCTCTAC
* *
51404954 TCATGTGGTCAATTTTGAGCATTCTCTTTCTCAAAATTAAGGTGCAGGGGACACACGGCTGAAAC
195 CCATGTGGTCAATTCTGAGCATTCTCTTTCTCAAAATTAAGGTGCAGGGGACACACGGCTGAAAC
51405019 ACA
260 ACA
51405022 TGCCCGTGGG
Statistics
Matches: 240, Mismatches: 17, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
309 1 0.00
310 186 0.77
312 1 0.00
313 1 0.00
322 1 0.00
323 50 0.21
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (314 bp):
ACCCGTGTCCCTAACCCGTGTAATTCTCTATTTTGCAAAGCATGAACAAATTATGGCAAGTCACA
CCCCCGTGTCCTAGACTGCATGGTTAATTTAATTTTCATAAAATAGGTGCAGACTTCACACAGTC
GGGACACACGCCCGTACTTGAGACCGTGTCCCTCAACGGCTGAGACACACACTCGTGTCTCTACC
CATGTGGTCAATTCTGAGCATTCTCTTTCTCAAAATTAAGGTGCAGGGGACACACGGCTGAAACA
CACGTTCATATGGTTTGGGACACGCCTGTATGGGTAGCCCGTGTGGTCACACAC
Found at i:51419972 original size:18 final size:18
Alignment explanation
Indices: 51419951--51419994 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
51419941 CAATGAAAAT
*
51419951 AATAATAATAATTTAAGA
1 AATAATAATAATTCAAGA
*
51419969 AATAATAATAATTCAAGT
1 AATAATAATAATTCAAGA
51419987 AATAATAA
1 AATAATAA
51419995 CATAATGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (18 bp):
AATAATAATAATTCAAGA
Found at i:51420904 original size:28 final size:29
Alignment explanation
Indices: 51420862--51420975 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
51420852 TACCTACATC
* * *
51420862 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
51420890 TGGCCCATTAGGCCCAAATCATC-TGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CAT-TCATA
*
51420919 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
51420948 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
51420976 CTATCACATA
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:51425794 original size:47 final size:47
Alignment explanation
Indices: 51425687--51426168 Score: 784
Period size: 47 Copynumber: 10.1 Consensus size: 47
51425677 GAAATGATAG
51425687 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
51425736 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51425783 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51425830 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
51425879 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51425926 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51425973 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
51426022 TAGGGCCTAATGGCAGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
51426069 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
51426118 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
51426165 TAAG
1 TAAG
51426169 TCCCGAAGGG
Statistics
Matches: 409, Mismatches: 18, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
47 243 0.59
49 166 0.41
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51425872 original size:96 final size:95
Alignment explanation
Indices: 51425687--51426168 Score: 797
Period size: 96 Copynumber: 5.0 Consensus size: 95
51425677 GAAATGATAG
51425687 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
51425752 ATGTGATGAATGTGAAAGTGTATATATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
51425783 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
51425847 TGTGATGAATGTGAAAGTGTATATATATGTGA
66 TGTGATGAATGTGAAAGTG--TATATATGTGA
51425879 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
51425943 TGTGATGAATGTGAAAGTGTATATATGTGA
66 TGTGATGAATGTGAAAGTGTATATATGTGA
* *
51425973 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
51426038 ATGTGATGAATGTGAAAGTGTATATATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
51426069 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCG
* * *
51426134 ACGTGATGGATGTGAAAGTGTATAAATGTGA
65 ATGTGATGAATGTGAAAGTGTATATATGTGA
51426165 TAAG
1 TAAG
51426169 TCCCGAAGGG
Statistics
Matches: 369, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 93 0.25
96 276 0.75
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51425945 original size:143 final size:143
Alignment explanation
Indices: 51425687--51426168 Score: 833
Period size: 143 Copynumber: 3.4 Consensus size: 143
51425677 GAAATGATAG
51425687 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
51425752 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51425817 TGTATATATGTGA
131 TGTATATATGTGA
*
51425830 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
51425895 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51425960 TGTATATATGTGA
131 TGTATATATGTGA
* *
51425973 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
51426038 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
51426103 TGTATATATATGTGA
131 TG--TATATATGTGA
* * * * * * *
51426118 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51426169 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
143 279 0.86
144 1 0.00
145 44 0.14
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:51426343 original size:37 final size:37
Alignment explanation
Indices: 51426287--51426365 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51426277 CCGAGCTCTA
* * *
51426287 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51426324 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51426361 AAGAC
1 AAGAC
51426366 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51429375 original size:29 final size:29
Alignment explanation
Indices: 51429312--51429419 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
51429302 TTCACATACC
* * * *
51429312 TGTATCTGGCCCACTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
51429340 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
51429369 TGTATATGGCCCATTAGGTCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
51429398 TTTATATGGCCTATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
51429420 GTTACATTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.24
29 49 0.73
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:51429414 original size:58 final size:57
Alignment explanation
Indices: 51429309--51429419 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
51429299 AATTTCACAT
* * *
51429309 ACCTGTATCTGGCCCACTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCACTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
51429366 ACCTGTATATGGCCCATTAGGTCCAAATCACATTTATATGGCCTATTAGGCCCA
1 ACCTGTATATGGCCCACTAAG-CCAAATCACATTCATATGGCCCATTAGGCCCA
51429420 GTTACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTGTATATGGCCCACTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:51429660 original size:8 final size:8
Alignment explanation
Indices: 51429643--51429677 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
51429633 ATAGCCAAAC
51429643 TTTCGGCT
1 TTTCGGCT
*
51429651 TTTTGGCT
1 TTTCGGCT
*
51429659 TTTCGGCA
1 TTTCGGCT
51429667 TTTCGGCT
1 TTTCGGCT
51429675 TTT
1 TTT
51429678 GCTGATGCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.54
Consensus pattern (8 bp):
TTTCGGCT
Found at i:51432159 original size:40 final size:39
Alignment explanation
Indices: 51432082--51432326 Score: 325
Period size: 40 Copynumber: 6.2 Consensus size: 39
51432072 AAACCAAGTA
* * * *
51432082 CCTTCGGGATTTA-ACCGGATATAGCTACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
*
51432121 CCTTCGGGACTTAGCCTGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
51432161 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
51432201 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
* *
51432241 CCTTCGGGACTTAGCCTGGGAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCC-CGGATATAGT-ACTCGCACAAATG
*
51432281 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
51432321 CCTTCG
1 CCTTCG
51432327 TTATCATCCG
Statistics
Matches: 190, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
39 17 0.09
40 168 0.88
41 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:51434487 original size:8 final size:8
Alignment explanation
Indices: 51434476--51434528 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
51434466 AAATAAAGAA
51434476 ATTTTGGG
1 ATTTTGGG
*
51434484 ATTTTGAG
1 ATTTTGGG
*
51434492 ATTTTTGG
1 ATTTTGGG
* *
51434500 AGTTTGAG
1 ATTTTGGG
*
51434508 ATTTTTGG
1 ATTTTGGG
*
51434516 ATTTCGGG
1 ATTTTGGG
51434524 ATTTT
1 ATTTT
51434529 TGGGGCGTTA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.53
Consensus pattern (8 bp):
ATTTTGGG
Found at i:51434505 original size:16 final size:15
Alignment explanation
Indices: 51434476--51434531 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 15
51434466 AAATAAAGAA
*
51434476 ATTTTGGGATTTTGAG
1 ATTTTTGGA-TTTGAG
51434492 ATTTTTGGAGTTTGAG
1 ATTTTTGGA-TTTGAG
*
51434508 ATTTTTGGATTTCGGG
1 ATTTTTGGATTT-GAG
51434524 ATTTTTGG
1 ATTTTTGG
51434532 GGCGTTACAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
15 3 0.08
16 33 0.92
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.52
Consensus pattern (15 bp):
ATTTTTGGATTTGAG
Found at i:51437870 original size:23 final size:23
Alignment explanation
Indices: 51437840--51437888 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
51437830 GAAAGTAAGT
*
51437840 TATTATGTATAAGTCGGCATAGG
1 TATTATGTATAAGTCGGCACAGG
51437863 TATTATGTATAAGTCGGCACAGG
1 TATTATGTATAAGTCGGCACAGG
51437886 TAT
1 TAT
51437889 GTACATCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (23 bp):
TATTATGTATAAGTCGGCACAGG
Found at i:51438794 original size:148 final size:148
Alignment explanation
Indices: 51438526--51438985 Score: 805
Period size: 148 Copynumber: 3.1 Consensus size: 148
51438516 ACACGGCCTT
* * *
51438526 AGGACATGGACGTGTGCCCAAGCCGTGTGAAGTCTGTACTTAATTTTTGGAATTTAATTCGCCAC
1 AGGACAAGGGCGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCAC
*
51438591 ACTGCCTAAGCACACGGGCGTGTGACTTGGCCGTGTGGCCTTATTTGCTTGATAACGTCATAGTC
66 ACTGCCTAAGCACACGGGCGTGTGACTTGGCCATGTGGCCTTATTTGCTTGATAACGTCATAGTC
* *
51438656 AAAGAGTTACACAAACTG
131 AGAGAGTTACACAAGCTG
*
51438674 AGGACAAGGGCGTGTGCCCAAGCCGTGTGAAGTCTACACTTAATTTTTGGAATTTAATTCGCCAC
1 AGGACAAGGGCGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCAC
51438739 ACTGCCTAAGCACACGGGCGTGTGACTTGGCCATGTGGCCTTATTTGCTTGATAACGTCATAGTC
66 ACTGCCTAAGCACACGGGCGTGTGACTTGGCCATGTGGCCTTATTTGCTTGATAACGTCATAGTC
*
51438804 AGAGAGTTACACAAGCTA
131 AGAGAGTTACACAAGCTG
51438822 AGGACACA-GGCGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCA
1 AGGACA-AGGGCGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCA
* *
51438886 CACTACCTAAGCACACGGGCGTGTGACTTGGCCATGTGGCCTTATTTGCTTGATAATGTCATAGT
65 CACTGCCTAAGCACACGGGCGTGTGACTTGGCCATGTGGCCTTATTTGCTTGATAACGTCATAGT
51438951 CAGAGAGTTACACAAGCTG
130 CAGAGAGTTACACAAGCTG
*
51438970 AGGACACGGGCGTGTG
1 AGGACAAGGGCGTGTG
51438986 ACTCTCCAAA
Statistics
Matches: 297, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
148 296 1.00
149 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (148 bp):
AGGACAAGGGCGTGTGCCCAAGCCGTGTGAAGTCTGCACTTAATTTTTGGAATTTAATTCGCCAC
ACTGCCTAAGCACACGGGCGTGTGACTTGGCCATGTGGCCTTATTTGCTTGATAACGTCATAGTC
AGAGAGTTACACAAGCTG
Found at i:51451063 original size:9 final size:9
Alignment explanation
Indices: 51451049--51451073 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
51451039 AGTTGATTTG
51451049 TTGTTATTC
1 TTGTTATTC
51451058 TTGTTATTC
1 TTGTTATTC
51451067 TTGTTAT
1 TTGTTAT
51451074 AGTAGTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.08, G:0.12, T:0.68
Consensus pattern (9 bp):
TTGTTATTC
Found at i:51459548 original size:39 final size:39
Alignment explanation
Indices: 51459504--51459768 Score: 458
Period size: 39 Copynumber: 6.8 Consensus size: 39
51459494 TATCAGGACA
* * *
51459504 AAGCCTGCGGGACTTTAACCCAGATACATTTCCAACACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
51459543 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
51459582 AAGCCTGCGGGACTTTAGTCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
51459621 AAGCCTGCGGGACTTTAGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
51459660 AAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
51459699 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
51459738 AAGCCTGCGGGACTTTGGCCCGGATACATTT
1 AAGCCTGCGGGACTTTAGCCCGGATACATTT
51459769 TCAGTGTCTT
Statistics
Matches: 214, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 214 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:51464999 original size:57 final size:57
Alignment explanation
Indices: 51464898--51465013 Score: 137
Period size: 57 Copynumber: 2.0 Consensus size: 57
51464888 ATTGCATGAC
* * * *
51464898 TACGAATGTGTTTGGGCCGAATGGGCCCTATAAATGGCATTTGGGCCTAATGGGCCA
1 TACGAATATGTTTAGGCCGAATGGGCCATATAAATGGCATTTGGGCCTAATAGGCCA
* * *
51464955 TACGAATATGATTTAGGCCTAATGGGCCATATGAAT-G-ATATTGGGCCTAGTAGGCCA
1 TACGAATATG-TTTAGGCCGAATGGGCCATATAAATGGCAT-TTGGGCCTAATAGGCCA
51465012 TA
1 TA
51465014 TGCATGTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
56 2 0.04
57 27 0.54
58 21 0.42
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (57 bp):
TACGAATATGTTTAGGCCGAATGGGCCATATAAATGGCATTTGGGCCTAATAGGCCA
Found at i:51465010 original size:28 final size:29
Alignment explanation
Indices: 51464908--51465015 Score: 107
Period size: 29 Copynumber: 3.8 Consensus size: 29
51464898 TACGAATGTG
* *
51464908 TTTGGGCCGAATGGGCCCTAT-AA-ATGGCA
1 TTTGGGCCTAATGGGCCATATGAATAT-G-A
*
51464937 TTTGGGCCTAATGGGCCATACGAATATGA
1 TTTGGGCCTAATGGGCCATATGAATATGA
*
51464966 TTTAGGCCTAATGGGCCATATG-A-ATGA
1 TTTGGGCCTAATGGGCCATATGAATATGA
* *
51464993 TATTGGGCCTAGTAGGCCATATG
1 T-TTGGGCCTAATGGGCCATATG
51465016 CATGTATGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
27 5 0.07
28 19 0.28
29 39 0.57
30 3 0.04
31 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (29 bp):
TTTGGGCCTAATGGGCCATATGAATATGA
Found at i:51467876 original size:27 final size:27
Alignment explanation
Indices: 51467856--51468013 Score: 147
Period size: 27 Copynumber: 5.9 Consensus size: 27
51467846 ATTACCAAAG
* ***
51467856 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
51467883 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTT
*
51467910 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCATTT
* *
51467937 TA-CCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTT
* * * ***
51467963 TACCCTTGACTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCATTT
* * *
51467990 TACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTATAAAATTACCA
51468014 AAATACCCCT
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
26 25 0.22
27 87 0.78
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCATTT
Found at i:51467949 original size:26 final size:27
Alignment explanation
Indices: 51467856--51467986 Score: 156
Period size: 27 Copynumber: 4.9 Consensus size: 27
51467846 ATTACCAAAG
* * ***
51467856 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
51467883 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
51467910 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
51467937 TA-CCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
51467963 TACCCTTGACTTGTAAAATTACCA
1 TACCCTCGATTTATAGAATTACCA
51467987 AAATACCCTT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 25 0.27
27 67 0.73
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:51467965 original size:53 final size:54
Alignment explanation
Indices: 51467856--51467986 Score: 165
Period size: 53 Copynumber: 2.4 Consensus size: 54
51467846 ATTACCAAAG
* *** *
51467856 TACCCTCGATTTACAAAATTATTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* *
51467910 TACCCTCGATTTATAGAATTACCATTTTA-CCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
* * *
51467963 TACCCTTGACTTGTAAAATTACCA
1 TACCCTCGATTTATAAAATTACCA
51467987 AAATACCCTT
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 42 0.64
54 24 0.36
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
Found at i:51468036 original size:27 final size:27
Alignment explanation
Indices: 51468006--51468282 Score: 329
Period size: 27 Copynumber: 10.3 Consensus size: 27
51467996 TGGTTTACAA
*
51468006 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51468033 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51468060 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
51468087 AATTACCAAAATACCTTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51468114 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
51468141 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51468168 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51468195 AATTACCGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51468222 AAATATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
51468249 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
51468276 AATTACC
1 AATTACC
51468283 ATTTTGCACT
Statistics
Matches: 217, Mismatches: 33, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51468420 original size:11 final size:11
Alignment explanation
Indices: 51468394--51468468 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
51468384 ATATTGTTAT
*
51468394 ACATGATA-GG
1 ACATGATATGC
51468404 ACATGATATGC
1 ACATGATATGC
51468415 ACATGATATG-
1 ACATGATATGC
**
51468425 TTATGATATGC
1 ACATGATATGC
51468436 ACATGATATGC
1 ACATGATATGC
* *
51468447 -TATGATATAC
1 ACATGATATGC
* *
51468457 TCATTATATGC
1 ACATGATATGC
51468468 A
1 A
51468469 TGGGTTGGGT
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
10 24 0.47
11 27 0.53
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:51468420 original size:21 final size:21
Alignment explanation
Indices: 51468394--51468443 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
51468384 ATATTGTTAT
51468394 ACATGATAGGACATGATATGC
1 ACATGATAGGACATGATATGC
* **
51468415 ACATGATATGTTATGATATGC
1 ACATGATAGGACATGATATGC
51468436 ACATGATA
1 ACATGATA
51468444 TGCTATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (21 bp):
ACATGATAGGACATGATATGC
Found at i:51468467 original size:21 final size:21
Alignment explanation
Indices: 51468406--51468454 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
51468396 ATGATAGGAC
*
51468406 ATGATATGCACATGATATGTT
1 ATGATATGCACATGATATGCT
51468427 ATGATATGCACATGATATGCT
1 ATGATATGCACATGATATGCT
51468448 ATGATAT
1 ATGATAT
51468455 ACTCATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:51468536 original size:25 final size:25
Alignment explanation
Indices: 51468502--51468571 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
51468492 AGGAAGGGCT
* *
51468502 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
51468527 AAAAGGGCTTTGCCCGAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
51468552 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
51468572 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:51468584 original size:24 final size:24
Alignment explanation
Indices: 51468501--51468584 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
51468491 GAGGAAGGGC
* *
51468501 TAAAAGGGCTTTGCCCTAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
51468526 GAAAAGGGCTTTGCCCGAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
51468550 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
51468574 TAAAAGAGGCT
1 TAAAAG-GGCT
51468585 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 38 0.75
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:51471761 original size:17 final size:17
Alignment explanation
Indices: 51471739--51471774 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51471729 CAGGGTTTGG
* *
51471739 AACCAATGCGAGTAAGC
1 AACCAATCCAAGTAAGC
51471756 AACCAATCCAAGTAAGC
1 AACCAATCCAAGTAAGC
51471773 AA
1 AA
51471775 GCCTCCAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.11
Consensus pattern (17 bp):
AACCAATCCAAGTAAGC
Found at i:51491321 original size:47 final size:48
Alignment explanation
Indices: 51491265--51491491 Score: 195
Period size: 46 Copynumber: 4.8 Consensus size: 48
51491255 GGTAAGTTGC
51491265 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCAT-ATCTC-AAAT
1 CGATGCCATGTCCCAGACATG-TCTTACACTGGCTCATCATCTCGAAAT
* * * * * * **
51491312 CAATGCCATGTCTCAAACATGGTCTTACAGTGACT-ATCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAAAT
* * * **
51491360 CGATG-CATGTCCTAGACATGTCTTACACTGGCTTA-CGTCTCGAGGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAAT
* * *
51491406 CGATG-CATGTCCTAGACATGTCTTACACTAGCTC-TCGTCTC--AAT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAAT
51491450 GCTGATGCCATGTCCCAGACATGATCTTACACTGGCTC-TCAT
1 -C-GATGCCATGTCCCAGACATG-TCTTACACTGGCTCATCAT
51491492 AATGTGGCCG
Statistics
Matches: 146, Mismatches: 25, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 63 0.43
47 59 0.40
48 22 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAAAT
Found at i:51491401 original size:46 final size:46
Alignment explanation
Indices: 51491263--51491533 Score: 185
Period size: 46 Copynumber: 5.8 Consensus size: 46
51491253 TGGGTAAGTT
* * *
51491263 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATG-CATGTCCTAGACATG-TCTTACACTGGCTC-TCGTCTCGAG
** * * * * * *
51491310 ATCAATGCCATGT-CTCAAACATGGTCTTACAGTGACTATCATCTCGTA-
1 GCCGATG-CATGTCCT-AGACAT-GTCTTACACTGGCTCTCGTCTCG-AG
51491358 GCCGATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT-CGTCTCGAG
* * * *
51491404 GTCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCGTCTCGAG
* * * * *
51491450 GCTGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCTAGACATG-TCTTACACTGGCTCTCGT-CTCGAG
* * * *
51491498 GCCGATGCATATCCCAGATATGTCTTACACTAGCTC
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTC
51491534 ACACTCAAAT
Statistics
Matches: 180, Mismatches: 32, Indels: 25
0.76 0.14 0.11
Matches are distributed among these distances:
45 2 0.01
46 78 0.43
47 69 0.38
48 29 0.16
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCGTCTCGAG
Found at i:51491523 original size:140 final size:141
Alignment explanation
Indices: 51491265--51491528 Score: 322
Period size: 140 Copynumber: 1.9 Consensus size: 141
51491255 GGTAAGTTGC
* *
51491265 CGATGCCATGTCCCAGACATGATCTTACACTGGCTCATATCTCAAATCAATGCCATGTCTCAAAC
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCATATCTCAAATCAATGCCATGTCCCAAAC
* * * * *
51491330 ATGGTCTTACAGTGACTATCATCTCGTAGCCGATGCATGTCCTAGACATGTCTTACACTGGCTTA
66 ATGATCTTACACTGACTATCATATCGTAGCCGATGCATATCCCAGACATGTCTTACACTGGCTTA
51491395 CGTCTCGAGGT
131 CGTCTCGAGGT
* * *
51491406 CGATG-CATGTCCTAGACATG-TCTTACACTAGCTC-TCGTCTC-AATGCTGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGATCTTACACTAGCTCAT-ATCTCAAAT-C-AATGCCATGTCCCA
* * * * *
51491467 GACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGCATATCCCAGATATGTCTTACACT
63 AACATGATCTTACACTGACTATCAT-ATCGTAGCCGATGCATATCCCAGACATGTCTTACACT
51491529 AGCTCACACT
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 4 0.04
139 18 0.17
140 76 0.73
141 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGATCTTACACTAGCTCATATCTCAAATCAATGCCATGTCCCAAAC
ATGATCTTACACTGACTATCATATCGTAGCCGATGCATATCCCAGACATGTCTTACACTGGCTTA
CGTCTCGAGGT
Found at i:51526326 original size:27 final size:27
Alignment explanation
Indices: 51526296--51526357 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
51526286 ATTTACTAAA
*
51526296 ATACCCCTAAGTATG-AAAATTACCTTT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
51526323 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
51526349 ATACCCCTA
1 ATACCCCTA
51526358 GGGATAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.29
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:51534356 original size:27 final size:27
Alignment explanation
Indices: 51534298--51534378 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
51534288 GAGGAAGCGT
* *
51534298 TCTGGTGGCTCTGCCACAAATATCTATT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
51534326 TCTGGTGGCTTTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
51534353 TCTGGTGACTCTGTCACAATATCTGT
1 TCTGGTGGCTCTGCCACAATATCTGT
51534379 TCTAGCAGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 31 0.66
28 16 0.34
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:51536466 original size:29 final size:28
Alignment explanation
Indices: 51536423--51536500 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
51536413 TCATGAGATT
51536423 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
51536453 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
51536480 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
51536501 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:51536718 original size:174 final size:174
Alignment explanation
Indices: 51536453--51536780 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
51536443 AAATTGTACA
* *
51536453 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
51536518 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
51536583 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
*
51536627 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
51536692 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
51536757 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
51536781 ACCTTGGGTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
Found at i:51541500 original size:18 final size:17
Alignment explanation
Indices: 51541474--51541509 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51541464 TGGGCCTACG
51541474 GCTCATGTGGGCCCATAC
1 GCTCATGT-GGCCCATAC
*
51541492 GCTCGTGTGGCCCATAC
1 GCTCATGTGGCCCATAC
51541509 G
1 G
51541510 GCCCATAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.14, C:0.33, G:0.31, T:0.22
Consensus pattern (17 bp):
GCTCATGTGGCCCATAC
Found at i:51548787 original size:38 final size:38
Alignment explanation
Indices: 51548736--51548815 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 38
51548726 ATTTGATGTG
* * * * *
51548736 TATTCAGGTTAAATCCTGCAGGCTTCGTGCTGGTATTA
1 TATTCAGGATAAATCCCGCAGGCCTAGTCCTGGTATTA
*
51548774 TATTCGGGATAAATCCCGCAGGCCTAGTCCTGGTATTA
1 TATTCAGGATAAATCCCGCAGGCCTAGTCCTGGTATTA
51548812 TATT
1 TATT
51548816 TGGGCTTTCG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (38 bp):
TATTCAGGATAAATCCCGCAGGCCTAGTCCTGGTATTA
Found at i:51548870 original size:43 final size:43
Alignment explanation
Indices: 51548812--51549022 Score: 350
Period size: 43 Copynumber: 4.9 Consensus size: 43
51548802 CCTGGTATTA
* *
51548812 TATTTGGGCTTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
51548855 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
51548898 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
51548941 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
51548984 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
51549023 AATGATATGT
Statistics
Matches: 158, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 158 1.00
ACGTcount: A:0.11, C:0.23, G:0.35, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:51558718 original size:28 final size:29
Alignment explanation
Indices: 51558678--51558740 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
51558668 TTCACATACC
* *
51558678 TTTATATGGCCCACTAGG-CCTAATCACA
1 TTTATATGACCCACTAGGCCCAAATCACA
*
51558706 TTTATATGACCCATTAGGCCCAAATCACA
1 TTTATATGACCCACTAGGCCCAAATCACA
51558735 TTTATA
1 TTTATA
51558741 GTCATGCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (29 bp):
TTTATATGACCCACTAGGCCCAAATCACA
Found at i:51564738 original size:11 final size:11
Alignment explanation
Indices: 51564724--51564799 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
51564714 CAATATTGAT
51564724 ATGATATGCAC
1 ATGATATGCAC
*
51564735 ATGATATG--T
1 ATGATATGCAC
51564744 ATGATATGCAC
1 ATGATATGCAC
*
51564755 ATGATAT--AT
1 ATGATATGCAC
*
51564764 ACGATATGCAC
1 ATGATATGCAC
*
51564775 ATGATATG--T
1 ATGATATGCAC
51564784 ATGATATGCAC
1 ATGATATGCAC
51564795 ATGAT
1 ATGAT
51564800 GTATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51564748 original size:20 final size:20
Alignment explanation
Indices: 51564723--51564799 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
51564713 ACAATATTGA
51564723 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
51564743 TATGATATGCACATGATATA
1 TATGATATGCACATGATATG
*
51564763 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
51564783 TATGATATGCACATGAT
1 TATGATATGCACATGAT
51564800 GTATTCATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:51564927 original size:52 final size:49
Alignment explanation
Indices: 51564849--51564959 Score: 177
Period size: 52 Copynumber: 2.2 Consensus size: 49
51564839 CAGGAAGTGC
51564849 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCG-AAAGGGCTTATGCCCCAG-TTATT
*
51564900 GAAAAGGGCTTATGCCCCAGTTTACCGAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTTACCGAAAGGGCTTATGCCCCAGTTATT
51564950 AAAAGAGGCT
1 AAAAG-GGCT
51564960 AGGCCTCCAG
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
49 5 0.09
50 9 0.16
51 17 0.30
52 26 0.46
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAGGGCTTATGCCCCAGTTATT
Found at i:51564940 original size:25 final size:26
Alignment explanation
Indices: 51564849--51564946 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
51564839 CAGGAAGTGC
51564849 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
51564875 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
51564901 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
51564927 -AAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
51564947 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 19 0.28
26 48 0.72
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:51564959 original size:25 final size:25
Alignment explanation
Indices: 51564849--51564959 Score: 134
Period size: 26 Copynumber: 4.4 Consensus size: 25
51564839 CAGGAAGTGC
*
51564849 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTA-CT
*
51564875 AAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACT
*
51564900 GAAAAGGGCTTATGCCCCAGTTTACC
1 -AAAAGGGCTTATGCCCCAGTTTACT
* * *
51564926 GAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTATGCCCCAGTTTACT
51564950 AAAAGAGGCT
1 AAAAG-GGCT
51564960 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.09
25 21 0.28
26 46 0.62
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTACT
Found at i:51565585 original size:18 final size:18
Alignment explanation
Indices: 51565562--51565599 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51565552 TAGACATAAG
*
51565562 ACTTGTTTTCAAAACGAC
1 ACTTGTTTTCAAAACAAC
*
51565580 ACTTGTTTTCCAAACAAC
1 ACTTGTTTTCAAAACAAC
51565598 AC
1 AC
51565600 AACGTTACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (18 bp):
ACTTGTTTTCAAAACAAC
Found at i:51577686 original size:24 final size:24
Alignment explanation
Indices: 51577647--51577720 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
51577637 GAGCCAACAT
* *
51577647 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTATGCGGATTTGAA
* * * *
51577671 TGGCACTATGTATGCGAAATCGAT
1 TGGCACTATGTATGCGGATTTGAA
51577695 TGGCACTATGTATGCTGG-TTTGAA
1 TGGCACTATGTATGC-GGATTTGAA
51577719 TG
1 TG
51577721 TCATTAAATG
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
24 38 0.97
25 1 0.03
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTATGCGGATTTGAA
Found at i:51583501 original size:46 final size:45
Alignment explanation
Indices: 51583451--51583622 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
51583441 TGGGCATCCA
51583451 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*** * *
51583497 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
* *
51583544 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
* *
51583590 AGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51583623 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.60
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:51583602 original size:93 final size:93
Alignment explanation
Indices: 51583443--51583614 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
51583433 AGGATGTTTG
* * *
51583443 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
51583508 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
51583536 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
51583601 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
51583615 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51586938 original size:24 final size:25
Alignment explanation
Indices: 51586886--51586950 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
51586876 GAATTTCCAA
*
51586886 AGCACTATGTGTGCG-GTTTAGCAT
1 AGCACTATGTGTGCGAATTTAGCAT
*
51586910 GGCACTATGTGTGCGAATTT-G-ATT
1 AGCACTATGTGTGCGAATTTAGCA-T
51586934 AGCACTATGTGTGCGAA
1 AGCACTATGTGTGCGAA
51586951 ATCGGTTGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 1 0.03
24 32 0.89
25 3 0.08
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.32
Consensus pattern (25 bp):
AGCACTATGTGTGCGAATTTAGCAT
Found at i:51589255 original size:18 final size:18
Alignment explanation
Indices: 51589232--51589266 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
51589222 ACGATGTGCC
51589232 AAACTATTTTCGTGCTTG
1 AAACTATTTTCGTGCTTG
51589250 AAACTATTTTCGTGCTT
1 AAACTATTTTCGTGCTT
51589267 CTTATTCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (18 bp):
AAACTATTTTCGTGCTTG
Found at i:51602119 original size:200 final size:199
Alignment explanation
Indices: 51601770--51602168 Score: 737
Period size: 200 Copynumber: 2.0 Consensus size: 199
51601760 AAAAGTGAAA
51601770 ATGTAAAGAAATGATGGTATCTACGATTACTTGAGTCGAGCAAAATTTAAGGATGAAATTCTTTT
1 ATGTAAAGAAATGATGGTATCTACGATTACTTGAGTCGAGCAAAATTTAAGGATGAAATTCTTTT
51601835 AAGAAGGGAGAAATGTAACATCCCTAAAACCACTATGGTATATAAGTGAAGAGTTATATCAAGAA
66 AAGAAGGGAGAAATGTAACATCCCTAAAACCACTATGGTATATAAGTGAAGAGTTATATCAAGAA
51601900 GATGCATAGTGGAATTTCTCAATTAAAAGAAATGTAATATATTAGTTATAGTAAAGAAAGGTATT
131 GATGCATAGTGGAATTTCTCAATTAAAAG-AATGTAATATATTAGTTATAGTAAAGAAAGGTATT
51601965 TGATG
195 TGATG
* *
51601970 ATGTAAAGAAATGATGGTATCTATGATTACTTGAGTCGAG-AAAATTTTGAGGATGAAATTCTTT
1 ATGTAAAGAAATGATGGTATCTACGATTACTTGAGTCGAGCAAAA-TTTAAGGATGAAATTCTTT
*
51602034 TAAGAAGGGAGAAATGTAACATCCCTAAAACTACTATGGTATATAAGTGAAGAGTTATATCAAGA
65 TAAGAAGGGAGAAATGTAACATCCCTAAAACCACTATGGTATATAAGTGAAGAGTTATATCAAGA
*
51602099 AGATGCATAGTGGGATTTCTCAATTAAAAGAATGTAATATATTAGTTATAGTAAAGAAAGGTATT
130 AGATGCATAGTGGAATTTCTCAATTAAAAGAATGTAATATATTAGTTATAGTAAAGAAAGGTATT
51602164 TGATG
195 TGATG
51602169 CTGGAGAAAG
Statistics
Matches: 194, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
199 44 0.23
200 150 0.77
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (199 bp):
ATGTAAAGAAATGATGGTATCTACGATTACTTGAGTCGAGCAAAATTTAAGGATGAAATTCTTTT
AAGAAGGGAGAAATGTAACATCCCTAAAACCACTATGGTATATAAGTGAAGAGTTATATCAAGAA
GATGCATAGTGGAATTTCTCAATTAAAAGAATGTAATATATTAGTTATAGTAAAGAAAGGTATTT
GATG
Found at i:51604419 original size:29 final size:28
Alignment explanation
Indices: 51604354--51604421 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
51604344 TTTAATTTCA
* *
51604354 ACAC-CCGTGTGTCACACACAGCTGTGT
1 ACACGCCGTGTGTCACACACAGCTGAGC
*
51604381 ACATGACCGTGTGTCACACAC-GACTGAGAC
1 ACACG-CCGTGTGTCACACACAG-CTGAG-C
51604411 ACACGCCGTGT
1 ACACGCCGTGT
51604422 CTCTGCCCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
27 3 0.09
28 1 0.03
29 25 0.76
30 4 0.12
ACGTcount: A:0.25, C:0.32, G:0.24, T:0.19
Consensus pattern (28 bp):
ACACGCCGTGTGTCACACACAGCTGAGC
Found at i:51613884 original size:25 final size:25
Alignment explanation
Indices: 51613851--51613905 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
51613841 TGATGTGTTG
*
51613851 AAAAAAATTATCTCGGTTGAGGTTA
1 AAAAAAATTATCTCGGCTGAGGTTA
*
51613876 AAAAAAATTGTCTCGGCTGAGGTTA
1 AAAAAAATTATCTCGGCTGAGGTTA
51613901 AAAAA
1 AAAAA
51613906 GGAATTCGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAAAATTATCTCGGCTGAGGTTA
Found at i:51621496 original size:40 final size:40
Alignment explanation
Indices: 51621452--51621625 Score: 208
Period size: 40 Copynumber: 4.3 Consensus size: 40
51621442 GCCTTCAGAT
* *
51621452 CTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGA
1 CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
* * *
51621492 CTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGT
1 CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
* *
51621532 CTCAGCCCGGATATAG-CAACTCGCACAAATGCCTTC-GGA
1 CTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGA
* * * * *
51621571 TCTTAGTCTGGATATAGTCACTAGCATAAAAGCCTTCGGAA
1 -CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
51621612 CTTAGCCCGGATAT
1 CTTAGCCCGGATAT
51621626 CATGCACATA
Statistics
Matches: 111, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.03
40 105 0.95
41 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA
Found at i:51621544 original size:80 final size:78
Alignment explanation
Indices: 51621407--51621625 Score: 235
Period size: 80 Copynumber: 2.8 Consensus size: 78
51621397 ACCCAAGTAT
* * * * * *
51621407 CTTCGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCAGATCTTAGCCCGGATATGGTC-
1 CTTCGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAG-CA
*
51621470 ACTAGCATAAATGC
65 ACTAGCACAAATGC
* * * *
51621484 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTCAGCCCGGATATAGC
1 CTTC-GGACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAGC
*
51621549 AACTCGCACAAATGC
64 AACTAGCACAAATGC
* * * *
51621564 CTTCGGATCTTAGTCTGGATATAGTCACTAGCATAAAAGCCTTCGGAACTTAGCCCGGATAT
1 CTTCGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGATCTTAGCCCGGATAT
51621626 CATGCACATA
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 4 0.03
78 7 0.06
79 21 0.18
80 85 0.73
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
CTTCGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAGCAA
CTAGCACAAATGC
Found at i:51628723 original size:40 final size:40
Alignment explanation
Indices: 51628640--51628859 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
51628630 ACCCAAGTAT
** * *
51628640 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51628678 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
51628718 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
51628758 CTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
51628798 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
51628838 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
51628860 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 123 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:51645476 original size:15 final size:15
Alignment explanation
Indices: 51645437--51645514 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
51645427 GTATCTTGGG
*
51645437 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
51645452 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
51645467 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
* *
51645480 GTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
51645495 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
51645509 TTTCTT
1 TTTCTT
51645515 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
12 2 0.04
13 6 0.12
14 12 0.24
15 29 0.57
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51645503 original size:28 final size:29
Alignment explanation
Indices: 51645428--51645507 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 29
51645418 CATAGTATCG
* * *
51645428 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATCTCTC
*
51645458 TAT-TCTGGATTTCTTTATTCGGGT-TCTC
1 TATCT-TGGATTTCTTTATTCGGATCTCTC
51645486 TATCTTGGATTTCTTTATTCGG
1 TATCTTGGATTTCTTTATTCGG
51645508 TTTTCTTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
28 23 0.52
29 5 0.11
30 16 0.36
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.54
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATCTCTC
Found at i:51651314 original size:26 final size:26
Alignment explanation
Indices: 51651278--51651406 Score: 186
Period size: 26 Copynumber: 5.0 Consensus size: 26
51651268 AACACGTCAA
51651278 GAAAGAAAGCCTGTGTGGTGTAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATAT
*
51651304 GAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATAT
*
51651330 GAAAGAAAGCTTGTGTGGTGTAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATAT
* * **
51651356 AAAAGAAAGCCTGTGAGGCATAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATAT
* *
51651382 GAAAGAAAGCCTATGTGGTATAATA
1 GAAAGAAAGCCTGTGTGGTGTAATA
51651407 CAGTAGCCCG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 91 1.00
ACGTcount: A:0.39, C:0.09, G:0.28, T:0.25
Consensus pattern (26 bp):
GAAAGAAAGCCTGTGTGGTGTAATAT
Found at i:51656932 original size:42 final size:42
Alignment explanation
Indices: 51656879--51657028 Score: 158
Period size: 42 Copynumber: 3.5 Consensus size: 42
51656869 AAGATTACCA
* * *
51656879 GTAAGACCATATCTGGGATATGGAATCTATATGAGATTTTGT
1 GTAAGACCATATCTGGGATATGGAATCGATATGAGACTTTAT
* *
51656921 GTAAGATCATATCTGGGATATGGTATCGATATGAGACTTTAT
1 GTAAGACCATATCTGGGATATGGAATCGATATGAGACTTTAT
* * * * * *
51656963 GTAAGACCATAGCTGGGCTGTTGGCATCGATACGAGA-TTACAT
1 GTAAGACCATATCTGGGAT-ATGGAATCGATATGAGACTT-TAT
**
51657006 GTAAGACCATATCTAAGATATGG
1 GTAAGACCATATCTGGGATATGG
51657029 CATTGGTATA
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 58 0.65
43 31 0.35
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGAATCGATATGAGACTTTAT
Found at i:51659709 original size:12 final size:12
Alignment explanation
Indices: 51659692--51659723 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
51659682 AGAATTGAGC
*
51659692 ACATGGGTAGAG
1 ACATGGGCAGAG
51659704 ACATGGGCAGAG
1 ACATGGGCAGAG
51659716 ACATGGGC
1 ACATGGGC
51659724 GTGTGTCCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.16, G:0.41, T:0.12
Consensus pattern (12 bp):
ACATGGGCAGAG
Found at i:51662573 original size:40 final size:40
Alignment explanation
Indices: 51662426--51662609 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
51662416 TCGAATGATG
* * * *
51662426 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
51662466 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51662505 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51662544 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51662585 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51662610 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 71 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51662641 original size:78 final size:78
Alignment explanation
Indices: 51662479--51662634 Score: 199
Period size: 78 Copynumber: 2.0 Consensus size: 78
51662469 GGACTAAGAT
** **
51662479 CCGAAGGCATTTGTGCGAGTTACTAATTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
*
51662544 TCCGGGTTAAGTC
66 TCCGGGTTAAATC
* *
51662557 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
*
51662621 ATATCC-GGTTAAAT
63 AAATCCGGGTTAAAT
51662635 TCGAAGGTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 25 0.37
79 18 0.27
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:51670615 original size:39 final size:39
Alignment explanation
Indices: 51670569--51670682 Score: 176
Period size: 39 Copynumber: 2.9 Consensus size: 39
51670559 GGACTAATAT
* * *
51670569 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGC
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGC
*
51670608 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGC
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGC
51670647 CCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTA
1 CCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTA
51670683 TGTCTCGAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
39 67 0.97
40 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGC
Found at i:51670721 original size:78 final size:78
Alignment explanation
Indices: 51670569--51670722 Score: 170
Period size: 78 Copynumber: 2.0 Consensus size: 78
51670559 GGACTAATAT
* ** * **
51670569 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTGGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
51670634 ATCCGGGTTAAGC
66 ATCCGGGTTAAGC
* * *
51670647 CCGAAGGCATTGGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGAATTTGAACGAG-TAGC
1 CCGAAGGCATTGGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGAATTGGAACGAGTTA-C
*
51670710 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
51670723 ATTCCGAAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
77 2 0.03
78 39 0.62
79 22 0.35
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTGGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGAATTGGAACGAGTTACTAA
ATCCGGGTTAAGC
Found at i:51679859 original size:34 final size:34
Alignment explanation
Indices: 51679816--51679889 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
51679806 AGCGCCACGA
51679816 TTCACAACTC-AGTATGGAAACACCATACCTACGT
1 TTCACAACTCGA-TATGGAAACACCATACCTACGT
*
51679850 TTCACAACTCGATATGGAAATACCATACCTACGT
1 TTCACAACTCGATATGGAAACACCATACCTACGT
51679884 TTCACA
1 TTCACA
51679890 CTGTGCCATG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (34 bp):
TTCACAACTCGATATGGAAACACCATACCTACGT
Found at i:51679974 original size:27 final size:27
Alignment explanation
Indices: 51679944--51680008 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
51679934 GATCACTGAA
* * *
51679944 CACTTTGCTATGTTTGTCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
* *
51679971 CACTTTTCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
51679998 CACTTTGCCAT
1 CACTTTGCCAT
51680009 AGTTCAACTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.42
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:51680152 original size:31 final size:31
Alignment explanation
Indices: 51680073--51680183 Score: 96
Period size: 31 Copynumber: 3.5 Consensus size: 31
51680063 GTGCAGCTAA
* ** *
51680073 AGCTACCACTTATCACTTGTCAATTGTAGCCGA
1 AGCTACCACTTTTCACTAATCAA--GTAGCCGG
* * * * *
51680106 AACTACCACTATTCACTAATTAATTAGCTGG
1 AGCTACCACTTTTCACTAATCAAGTAGCCGG
* * *
51680137 AGCTACTACTTTTCACTGATCAGGTAGCCGG
1 AGCTACCACTTTTCACTAATCAAGTAGCCGG
51680168 AGCTACCACTTTTCAC
1 AGCTACCACTTTTCAC
51680184 ATTGTACACA
Statistics
Matches: 60, Mismatches: 18, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
31 43 0.72
33 17 0.28
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (31 bp):
AGCTACCACTTTTCACTAATCAAGTAGCCGG
Found at i:51680259 original size:33 final size:33
Alignment explanation
Indices: 51680176--51680287 Score: 138
Period size: 33 Copynumber: 3.4 Consensus size: 33
51680166 GGAGCTACCA
** *
51680176 CTTTTCACA-TTGTACACACAGGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
51680209 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
51680241 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
51680274 CTTTTCCAGTTGTA
1 CTTTTCAAGTTGTA
51680288 TATTTTAGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
32 28 0.41
33 40 0.59
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:51684555 original size:34 final size:34
Alignment explanation
Indices: 51684512--51684585 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 34
51684502 AGCGCCATGA
51684512 TTCACAACTCAGTATGGAAACACCATACCTACGT
1 TTCACAACTCAGTATGGAAACACCATACCTACGT
* *
51684546 TTCACAACTCGGTATGGAAATACCATACCTACGT
1 TTCACAACTCAGTATGGAAACACCATACCTACGT
51684580 TTCACA
1 TTCACA
51684586 CTGTGCCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAACACCATACCTACGT
Found at i:51684670 original size:27 final size:27
Alignment explanation
Indices: 51684640--51684704 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
51684630 GATCACTGAA
* * *
51684640 CACTTTGCTATGTTTGTCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
51684667 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
51684694 CACTTTGCCAT
1 CACTTTGCCAT
51684705 AGTTCAACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:51684818 original size:33 final size:32
Alignment explanation
Indices: 51684768--51684879 Score: 122
Period size: 31 Copynumber: 3.5 Consensus size: 32
51684758 AGTGTAGCTA
*
51684768 AAGCTACCACTTATCACTTG-TCAATTGTAGCCG
1 AAGCTACCACTTTTCAC-TGATCAA-TGTAGCCG
* * *
51684801 AAGCTACCACTATTCACTGATTAAT-TAGCTG
1 AAGCTACCACTTTTCACTGATCAATGTAGCCG
* * *
51684832 GAGCTACTACTTTTCACTGATC-AGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAATGTAGCCG
51684863 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
51684880 ATTGTACACA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
30 1 0.02
31 43 0.66
32 3 0.05
33 18 0.28
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (32 bp):
AAGCTACCACTTTTCACTGATCAATGTAGCCG
Found at i:51684956 original size:33 final size:33
Alignment explanation
Indices: 51684872--51684983 Score: 147
Period size: 33 Copynumber: 3.4 Consensus size: 33
51684862 GAAGCTACCA
* *
51684872 CTTTTCACA-TTGTACACACAAGGCGTACATTTC
1 CTTTTCA-AGTTGTACACACAAAGTGTACATTTC
*
51684905 CTTTTCAAG-TGTACACACAAAGTGTACGTTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
* *
51684937 CTTTTTAAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACAAAGTGTACATTTC
*
51684970 CTTTTCCAGTTGTA
1 CTTTTCAAGTTGTA
51684984 TATTTTAGGT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
32 29 0.42
33 40 0.58
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (33 bp):
CTTTTCAAGTTGTACACACAAAGTGTACATTTC
Found at i:51687831 original size:25 final size:26
Alignment explanation
Indices: 51687802--51687851 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
51687792 TCATGTATTT
*
51687802 ACTC-ATATAACATAACATTTATCAG
1 ACTCAATATAACAAAACATTTATCAG
*
51687827 ACTCAAATATAATAAAACATTTATC
1 ACTC-AATATAACAAAACATTTATC
51687852 CGTACCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
27 17 0.81
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (26 bp):
ACTCAATATAACAAAACATTTATCAG
Found at i:51689926 original size:79 final size:81
Alignment explanation
Indices: 51689825--51690009 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
51689815 GCTACTCGTT
* *
51689825 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51689888 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
51689905 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
51689969 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
51689985 CAAA-GCCTTCGGGACTTATCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51690010 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51690009 original size:40 final size:40
Alignment explanation
Indices: 51689825--51690009 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
51689815 GCTACTCGTT
* *
51689825 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51689865 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51689905 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
51689944 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
51689985 CAAA-GCCTTCGGGACTTATCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51690010 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51691979 original size:34 final size:34
Alignment explanation
Indices: 51691930--51692003 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
51691920 AACGCCACGA
*
51691930 TTCACAACTCAGTATGAAAACACCATACCTACGT
1 TTCACAACTCAGTATGAAAACACCACACCTACGT
* * * *
51691964 TTCACAGCTCGGTATGGAAATACCACACCTACGT
1 TTCACAACTCAGTATGAAAACACCACACCTACGT
51691998 TTCACA
1 TTCACA
51692004 CTTTGCCATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.24
Consensus pattern (34 bp):
TTCACAACTCAGTATGAAAACACCACACCTACGT
Found at i:51692088 original size:27 final size:27
Alignment explanation
Indices: 51692058--51692122 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
51692048 GATCACTGAA
* * *
51692058 CACTTTGCTATGTTTGTCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
51692085 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
51692112 CACTTTGCCAT
1 CACTTTGCCAT
51692123 AGTTCAACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:51692258 original size:31 final size:31
Alignment explanation
Indices: 51692179--51692359 Score: 188
Period size: 31 Copynumber: 5.8 Consensus size: 31
51692169 TCAGATAAGT
* * *
51692179 GTAGCTAAAGCTACCACTTATCACTTG-TCATTT
1 GTAGCTGAAGCTACCACTTTTCAC-TGATCA--G
* *
51692212 GTAGCCGAAGCTACCA-TTATTCAGTGATCAG
1 GTAGCTGAAGCTACCACTT-TTCACTGATCAG
* * *
51692243 ATAGCTGGAGCTACCACTTTTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
51692274 GTAGCCGAAGCTACTACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
51692305 GTAG-TCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCT-GAAGCTACCACTTTTCACTGATCAG
**
51692336 GTAGCCAAAGCTACCACTTTTCAC
1 GTAGCTGAAGCTACCACTTTTCAC
51692360 ATTGTACACA
Statistics
Matches: 124, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
31 98 0.79
32 6 0.05
33 20 0.16
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:51692304 original size:62 final size:62
Alignment explanation
Indices: 51692212--51692359 Score: 210
Period size: 62 Copynumber: 2.4 Consensus size: 62
51692202 CTTGTCATTT
* *
51692212 GTAGCCGAAGCTACCA-TTATTCAGTGATCAGATAG-CTGGAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTT-TTCACTGATCAGATAGTC-GAAGCTACCACTTTTCACTAATCAG
* * *
51692274 GTAGCCGAAGCTACTACTTTTCACTGATCAGGTAGTCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGATAGTCGAAGCTACCACTTTTCACTAATCAG
*
51692336 GTAGCCAAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCAC
51692360 ATTGTACACA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
62 74 0.96
63 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGATAGTCGAAGCTACCACTTTTCACTAATCAG
Found at i:51692461 original size:33 final size:32
Alignment explanation
Indices: 51692352--51692463 Score: 122
Period size: 33 Copynumber: 3.4 Consensus size: 32
51692342 AAAGCTACCA
* *
51692352 CTTTTCACA-TTGTACACACAAGGCGTACCTTTC
1 CTTTTCA-AGTTGTACACACAA-GTGTACATTTC
*
51692385 CTTTTCAAG-TGTACACACAAAGTGTACGTTTCC
1 CTTTTCAAGTTGTACACAC-AAGTGTACATTT-C
51692418 CTTTT-AAGTTGTACACACACAGTGTACATTTC
1 CTTTTCAAGTTGTACACACA-AGTGTACATTTC
*
51692450 CTTTTCCAGTTGTA
1 CTTTTCAAGTTGTA
51692464 TCTTTTAGGT
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
32 28 0.41
33 41 0.59
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (32 bp):
CTTTTCAAGTTGTACACACAAGTGTACATTTC
Found at i:51694161 original size:11 final size:11
Alignment explanation
Indices: 51694145--51694197 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
51694135 TATACAAAAT
51694145 AAATAATAATA
1 AAATAATAATA
51694156 AAATAATAAT-
1 AAATAATAATA
* *
51694166 AAATATCTCATTA
1 AAATA-AT-AATA
*
51694179 AAATATTAATA
1 AAATAATAATA
51694190 AAATAATA
1 AAATAATA
51694198 TTTATCTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 5 0.15
11 21 0.62
12 3 0.09
13 5 0.15
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (11 bp):
AAATAATAATA
Done.