Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 169 of 290
Found at i:55220618 original size:50 final size:50
Alignment explanation
Indices: 55220184--55220624 Score: 401
Period size: 50 Copynumber: 8.7 Consensus size: 50
55220174 ATTGTGAGAA
* * *
55220184 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGATAGGT
* * * * *
55220236 TACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* * *
55220286 CACATGTGTAGTACTAAGTGCAAGCTACTATGCGTA-C---TTGATAGTTT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG-GT
* * * * *
55220333 CGATCATGTGTATAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGT
1 C-A-CATGTG--TAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* * * * *
55220387 CACGTGTTTAGTACTAAATGCAGGCTACTACGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* * * * * *
55220437 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAAATTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT-GA-TAGGT
* ** * * *
55220488 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
* * *
55220538 CACGTATGTAGTACTAAGTGCAGGTTACTATGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
*
55220588 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
55220625 ACGAGAGCTT
Statistics
Matches: 315, Mismatches: 60, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
46 6 0.02
47 1 0.00
48 4 0.01
49 12 0.04
50 187 0.59
51 61 0.19
52 36 0.11
53 1 0.00
54 2 0.01
55 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGT
Found at i:55231179 original size:16 final size:16
Alignment explanation
Indices: 55231158--55231189 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
55231148 AGAATGGAGT
55231158 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
55231174 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
55231190 CAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:55234188 original size:29 final size:28
Alignment explanation
Indices: 55234134--55234227 Score: 109
Period size: 28 Copynumber: 3.3 Consensus size: 28
55234124 AAAGCATGAT
* * *
55234134 TATGAATGTGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTTGGGCCTAGGGGCCA
55234162 TATGAATGTGATTTGGGCCTAAGGGGCCA
1 TATGAATGTGATTTGGGCCT-AGGGGCCA
* *
55234191 TATGAATGAGA-TTGGACCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAG-GGGCCA
*
55234219 TATGCATGT
1 TATGAATGT
55234228 ATGTACACTT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 2 0.04
28 38 0.67
29 17 0.30
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTTGGGCCTAGGGGCCA
Found at i:55236619 original size:44 final size:47
Alignment explanation
Indices: 55236514--55236621 Score: 132
Period size: 47 Copynumber: 2.4 Consensus size: 47
55236504 CTTTGACATA
** * *
55236514 GACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAAATATG
1 GACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAATATG
* * *
55236561 GGCTTACATGGCTCATTCCTGTCTCCAAAGCCATA-A-CT-GATATG
1 GACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAATATG
55236605 GACTTACATGGCTCATT
1 GACTTACATGGCTCATT
55236622 TTTCTGTCCT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 21 0.40
45 1 0.02
46 1 0.02
47 30 0.57
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (47 bp):
GACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAATATG
Found at i:55240949 original size:46 final size:49
Alignment explanation
Indices: 55240846--55240962 Score: 134
Period size: 48 Copynumber: 2.5 Consensus size: 49
55240836 CTTCGACATA
** * *
55240846 GACTTACATGAATTATTCTTGTCTCCAATGCCATATATATATAATATAG
1 GACTTACATGGCTTATTCCTGTCTCCAAAGCCATATATATATAATATAG
* * *
55240895 G-CTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGATAT-G
1 GACTTACATGGCTTATTCCTGTCTCCAAAGCCATATATATATAATATAG
*
55240940 GACTTACATGGCTTATTTCTGTC
1 GACTTACATGGCTTATTCCTGTC
55240963 CTGTCTTGTC
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.03
46 24 0.41
47 1 0.02
48 30 0.52
49 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (49 bp):
GACTTACATGGCTTATTCCTGTCTCCAAAGCCATATATATATAATATAG
Found at i:55242300 original size:17 final size:18
Alignment explanation
Indices: 55242265--55242300 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
55242255 ATTCTAAGGA
55242265 AAGGTTTTCAATGAAAAC
1 AAGGTTTTCAATGAAAAC
*
55242283 AAGGTTTTTAAT-AAAAC
1 AAGGTTTTCAATGAAAAC
55242300 A
1 A
55242301 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (18 bp):
AAGGTTTTCAATGAAAAC
Found at i:55248842 original size:29 final size:29
Alignment explanation
Indices: 55248787--55248909 Score: 135
Period size: 29 Copynumber: 4.3 Consensus size: 29
55248777 AAAGCATGAC
* * *
55248787 TATGAATGTGATTGGGGCC-GATAGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
55248815 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
55248844 TATGAATGTGATTTAGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
** * *
55248873 TACAAATAG-GA-TTGGGCCTAGTGGACCA
1 TATGAAT-GTGATTTGGGCCTAATGGGCCA
*
55248901 TATGCATGT
1 TATGAATGT
55248910 ATGTAGACTT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 36 0.45
29 42 0.52
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:55250067 original size:17 final size:18
Alignment explanation
Indices: 55250034--55250067 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
55250024 TCTAAGGAAG
55250034 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
55250052 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
55250068 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:55250687 original size:27 final size:27
Alignment explanation
Indices: 55250625--55250707 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
55250615 TAATTTGATG
* * *
55250625 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGTCCTTATATGGTA
55250652 AAATGACTGTTTTGTCCTTATATGGTA
1 AAATGACTGTTTTGTCCTTATATGGTA
*** *
55250679 AAATGACTGAAATGTCCTTACATGGTA
1 AAATGACTGTTTTGTCCTTATATGGTA
55250706 AA
1 AA
55250708 TTGGCTGCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.37
Consensus pattern (27 bp):
AAATGACTGTTTTGTCCTTATATGGTA
Found at i:55254765 original size:12 final size:12
Alignment explanation
Indices: 55254744--55254779 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
55254734 GGCAAAAATG
55254744 TAAA-TGTGTTT
1 TAAAGTGTGTTT
55254755 TAAAGTGTGTTT
1 TAAAGTGTGTTT
55254767 TAAAGTGTGTTT
1 TAAAGTGTGTTT
55254779 T
1 T
55254780 GGACTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.25, C:0.00, G:0.22, T:0.53
Consensus pattern (12 bp):
TAAAGTGTGTTT
Found at i:55257688 original size:40 final size:40
Alignment explanation
Indices: 55257644--55257778 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 40
55257634 CTACTATGTT
* ** *
55257644 TGGCACTTCGTGTGCGTTTTGAGATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGAATTGAGATAGCTTTGGCTATATA
* *
55257684 TGGCACTTAGTGTGCAAATTG-GAATAGCTTTGGATATATA
1 TGGCACTTAGTGTGCGAATTGAG-ATAGCTTTGGCTATATA
* *
55257724 TAGCACTTAGTGTGCGACGTTGAGATAGCTTTGGCTATGA-A
1 TGGCACTTAGTGTGCGA-ATTGAGATAGCTTTGGCTAT-ATA
*
55257765 AGGCACTTAGTGTG
1 TGGCACTTAGTGTG
55257779 TGAGATTATA
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 47 0.59
41 29 0.37
42 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGAATTGAGATAGCTTTGGCTATATA
Found at i:55267836 original size:93 final size:93
Alignment explanation
Indices: 55267723--55267894 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
55267713 CGCCCATAAG
* *
55267723 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
55267788 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
55267816 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
55267881 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
55267895 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:55267891 original size:46 final size:46
Alignment explanation
Indices: 55267716--55267891 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
55267706 TGTAACCCGC
* *
55267716 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
55267762 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
55267812 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
55267855 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
55267892 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:55279655 original size:358 final size:358
Alignment explanation
Indices: 55278998--55279728 Score: 1363
Period size: 358 Copynumber: 2.0 Consensus size: 358
55278988 GAGAAATTTG
*
55278998 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTTTTTTGAGATAGAGAATTATTA
1 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATAGAGAATTATTA
* *
55279063 CCCATGTAATTTAACTGCTCGTTATCCATGTTGTGGCCATAAGGTTGGTATTCTGAATTGCTTGA
66 CCCATGCAATTTAACTGCTCGTTATCCATATTGTGGCCATAAGGTTGGTATTCTGAATTGCTTGA
* *
55279128 TCCACCTCCATTTGCTTCACACTGCATTACTGGGTGAACCTGTGAAGAACTAATAAAATCATCAA
131 TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTATGAAGAACTAATAAAATCATCAA
55279193 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
196 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
*
55279258 GTTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
261 GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
55279323 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
326 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
*
55279356 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATCGAGAATTATTA
1 GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATAGAGAATTATTA
*
55279421 CCGATGCAATTTAACTGCTCGTTATCCATATTGTGGCCATAAGGTTGGTATTCTGAATTGCTTGA
66 CCCATGCAATTTAACTGCTCGTTATCCATATTGTGGCCATAAGGTTGGTATTCTGAATTGCTTGA
*
55279486 TCCACCTCCACTTGCTTCACACTGCATTATTGGGTGAACCTATGAAGAACTAATAAAATCATCAA
131 TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTATGAAGAACTAATAAAATCATCAA
*
55279551 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACTGAATTGACATTATAAACACCG
196 TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
*
55279616 GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTTTTCAGTGACATCTCCTCTAT
261 GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
55279681 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
326 AAACCCATAAGCATCTTCAGGTGTTTTATTATT
55279714 GATGGTTCCTCCAAC
1 GATGGTTCCTCCAAC
55279729 AATTGCGTCA
Statistics
Matches: 362, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
358 362 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (358 bp):
GATGGTTCCTCCAACCTGCATTGTAAGTATTACTATATGGATTGTTTTGAGATAGAGAATTATTA
CCCATGCAATTTAACTGCTCGTTATCCATATTGTGGCCATAAGGTTGGTATTCTGAATTGCTTGA
TCCACCTCCACTTGCTTCACACTGCATTACTGGGTGAACCTATGAAGAACTAATAAAATCATCAA
TTTTCTTATTCAAGAGTTCTACCTGATTAGAGAGCATGGTGACCGAATTGACATTATAAACACCG
GCTGTTTTCATTGGTTTTGTCCTCATGACTTGCCACTAATATTTATTCAGTGACATCTCCTCTAT
AAACCCATAAGCATCTTCAGGTGTTTTATTATT
Found at i:55284226 original size:21 final size:20
Alignment explanation
Indices: 55284198--55284237 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
55284188 GGATATAATA
55284198 GCCAAGCTTA-ATCATATTCG
1 GCCAAGCTTATAT-ATATTCG
55284218 GCCATAGCTTATATATATTC
1 GCCA-AGCTTATATATATTC
55284238 ACACATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (20 bp):
GCCAAGCTTATATATATTCG
Found at i:55286148 original size:64 final size:64
Alignment explanation
Indices: 55286080--55286214 Score: 216
Period size: 64 Copynumber: 2.1 Consensus size: 64
55286070 CTACATTTGG
* * *
55286080 TTAATATGATTTGGTTATGTTTTATATGTGTTAGTAATGGTTTAAAATTAGTTGATGAGTATGT
1 TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTGATGAGTATAT
* *
55286144 TTAATATGATTTTATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTTATGAGTATAT
1 TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTGATGAGTATAT
55286208 TTGAATA
1 TT-AATA
55286215 AATGTTGAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
64 61 0.94
65 4 0.06
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (64 bp):
TTAATATGATTTGATTATGTTTTATATGTGTTAGTAATGATTTAAAATTAGTTGATGAGTATAT
Found at i:55286199 original size:31 final size:31
Alignment explanation
Indices: 55286100--55286199 Score: 91
Period size: 31 Copynumber: 3.2 Consensus size: 31
55286090 TTGGTTATGT
*
55286100 TTTATATGTGTTAGTAATGGTTTAAAATTAG
1 TTTATATGTGTTAGTAATGATTTAAAATTAG
* *
55286131 TTGATGAGTATGT-TTAAT-ATGATTT--TATTATG
1 TT--T-A-TATGTGTTAGTAATGATTTAAAATTA-G
55286163 TTTTATATGTGTTAGTAATGATTTAAAATTAG
1 -TTTATATGTGTTAGTAATGATTTAAAATTAG
55286195 TTTAT
1 TTTAT
55286200 GAGTATATTT
Statistics
Matches: 54, Mismatches: 5, Indels: 20
0.68 0.06 0.25
Matches are distributed among these distances:
29 5 0.09
30 5 0.09
31 19 0.35
32 2 0.04
33 13 0.24
34 5 0.09
35 5 0.09
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (31 bp):
TTTATATGTGTTAGTAATGATTTAAAATTAG
Found at i:55291813 original size:53 final size:54
Alignment explanation
Indices: 55291735--55291964 Score: 203
Period size: 53 Copynumber: 4.3 Consensus size: 54
55291725 ATACTAAGGA
* * * * * *
55291735 TACACTGGTA-CCTTTCCTTTTTAAACTTACCATTGGCATGTCTTGACATGGTCT
1 TACA-TGGTATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGACATGGTCT
* * * * *
55291789 TACGTGGTATCCTTGCCTTAT-AAACTCACGATTGCCATGCCTTGGCATGGTCT
1 TACATGGTATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGACATGGTCT
* * ** ** * * *
55291842 TACATGGGATCTTTGCCTTATCGTAGTTTATCAATGCCATGTCTTGACACGGTCT
1 TACATGGTATCCTTGCCTTAT-AAAACTTACCAATGCCATGCCTTGACATGGTCT
* * * *
55291897 TACATGATTTCCTTGCCTTGTAAAACTTACCAATGCCATGCCTTGGCATGGTCT
1 TACATGGTATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGACATGGTCT
*
55291951 TACTTGGTATCCTT
1 TACATGGTATCCTT
55291965 AAACCCTAAG
Statistics
Matches: 136, Mismatches: 37, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
53 50 0.37
54 48 0.35
55 38 0.28
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
TACATGGTATCCTTGCCTTATAAAACTTACCAATGCCATGCCTTGACATGGTCT
Found at i:55296368 original size:46 final size:46
Alignment explanation
Indices: 55296315--55296490 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
55296305 TAATTGGGCA
*
55296315 TCCGAACT-AGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCA-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
55296361 TCCGAACTCATTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
55296406 CATCCGAGCT-AGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCA-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
55296454 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
55296491 GTGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:55296470 original size:93 final size:93
Alignment explanation
Indices: 55296311--55296482 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
55296301 CGAATAATTG
* *
55296311 GGCATCCGAACTAGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
55296376 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
55296404 GGCATCCGAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
55296469 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
55296483 ACTTATGGGT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:55301700 original size:53 final size:54
Alignment explanation
Indices: 55301619--55301826 Score: 202
Period size: 53 Copynumber: 3.9 Consensus size: 54
55301609 TTTCCTTTTT
* * * *
55301619 AAACTTACCATTGGCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * * * * *
55301672 AAACTCACCATTTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-A
* ** * * * * * *
55301727 TAGTTTATCAATGCCATGTCTTGACACGGTCTTACATGATTTCCTTGCCTTGTA
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* *
55301781 AAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
55301827 AAACCCTAAG
Statistics
Matches: 119, Mismatches: 34, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 45 0.38
54 36 0.30
55 38 0.32
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:55308758 original size:28 final size:28
Alignment explanation
Indices: 55308690--55308843 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
55308680 CATGAGATTG
* * * *
55308690 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
55308719 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
55308747 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
55308775 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
55308803 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
55308830 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
55308844 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.65
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:55313609 original size:21 final size:22
Alignment explanation
Indices: 55313563--55313620 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
55313553 CATGAACTTG
*
55313563 TTCGACTATGATTTGATAATGA
1 TTCGACTATGATTTGATAACGA
55313585 TTCGAC-AGTGATTTGA-AACGA
1 TTCGACTA-TGATTTGATAACGA
55313606 TTCGACTATGATTTG
1 TTCGACTATGATTTG
55313621 GTATTAGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (22 bp):
TTCGACTATGATTTGATAACGA
Found at i:55320892 original size:35 final size:35
Alignment explanation
Indices: 55320851--55320951 Score: 123
Period size: 35 Copynumber: 2.9 Consensus size: 35
55320841 TATAGGTAAG
*
55320851 TACATGTGAGCTTATATTGAAATTGTATATTCGAC
1 TACATGTGAGCTTATATTGAACTTGTATATTCGAC
* * *
55320886 TGCATGTGAGGTTATATTGAACTTG-AGTATTCGAT
1 TACATGTGAGCTTATATTGAACTTGTA-TATTCGAC
* * *
55320921 TATATGTGAACTTATATTGACCTTGTATATT
1 TACATGTGAGCTTATATTGAACTTGTATATT
55320952 TGGTTATATG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
34 1 0.02
35 53 0.96
36 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAACTTGTATATTCGAC
Found at i:55320959 original size:35 final size:35
Alignment explanation
Indices: 55320854--55320976 Score: 106
Period size: 35 Copynumber: 3.5 Consensus size: 35
55320844 AGGTAAGTAC
* * * **
55320854 ATGTGAGCTTATATTGAAATTGTA-TATTCGACTGC
1 ATGTGAACTTATATTGAACTTG-AGTATTCGATTAT
**
55320889 ATGTGAGGTTATATTGAACTTGAGTATTCGATTAT
1 ATGTGAACTTATATTGAACTTGAGTATTCGATTAT
* * *
55320924 ATGTGAACTTATATTGACCTTGTA-TATTTGGTTAT
1 ATGTGAACTTATATTGAACTTG-AGTATTCGATTAT
* *
55320959 ATGTGAAGTTATCTTGAA
1 ATGTGAACTTATATTGAA
55320977 TATGCATATT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
34 1 0.01
35 71 0.97
36 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.43
Consensus pattern (35 bp):
ATGTGAACTTATATTGAACTTGAGTATTCGATTAT
Found at i:55320986 original size:35 final size:35
Alignment explanation
Indices: 55320920--55320986 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
55320910 GAGTATTCGA
* *
55320920 TTATATGTGAACTTATATTGACCTTGTATATTTGG
1 TTATATGTGAACTTATATTGACATTGCATATTTGG
* *
55320955 TTATATGTGAAGTTATCTTGA-ATATGCATATT
1 TTATATGTGAACTTATATTGACAT-TGCATATT
55320987 CGGCCAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 1 0.04
35 26 0.96
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.48
Consensus pattern (35 bp):
TTATATGTGAACTTATATTGACATTGCATATTTGG
Found at i:55322601 original size:18 final size:18
Alignment explanation
Indices: 55322580--55322624 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
55322570 GAGAGACGAG
55322580 AGAAAAAGAAATCGAAAA
1 AGAAAAAGAAATCGAAAA
* *
55322598 AGAACAAGAAATTGAAAA
1 AGAAAAAGAAATCGAAAA
55322616 AGAAAAAGA
1 AGAAAAAGA
55322625 GAGTGAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AGAAAAAGAAATCGAAAA
Found at i:55325201 original size:42 final size:42
Alignment explanation
Indices: 55325142--55325229 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
55325132 TCTAAACCTG
* * *
55325142 TTGTCCATTGCCGTTACATATATTTAGAGTTCATCAAAAGTC
1 TTGTCCACTACCGTTACATATATTTAGAGTTCATCAAAAGCC
* *
55325184 TTGTCCACTACCGTTACATATGTTTAGAGTTCATTAAAAGCC
1 TTGTCCACTACCGTTACATATATTTAGAGTTCATCAAAAGCC
55325226 TTGT
1 TTGT
55325230 AGTTTTAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (42 bp):
TTGTCCACTACCGTTACATATATTTAGAGTTCATCAAAAGCC
Found at i:55328964 original size:29 final size:29
Alignment explanation
Indices: 55328925--55328980 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
55328915 AATGTGACTG
*
55328925 GGCCTAATGGGCCATATAAATGTGATTTT
1 GGCCTAATGGGCCATATAAATATGATTTT
*
55328954 GGCCTAATGGGCCATATGAATATGATT
1 GGCCTAATGGGCCATATAAATATGATT
55328981 GGGCTTAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATATGATTTT
Found at i:55330296 original size:31 final size:30
Alignment explanation
Indices: 55330225--55330305 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 30
55330215 TAGTCTCGAT
* *
55330225 ATATACTGGGCCGAAGCC-TTTCGTTTAAC
1 ATATACTGGGCCGAAGCCTTTTCGATAAAC
55330254 A-ATTACTGGGCCGAAGCCTTTTC-ATAAATC
1 ATA-TACTGGGCCGAAGCCTTTTCGATAAA-C
* *
55330284 ATATCACTGGGCCAAATCCTTT
1 ATAT-ACTGGGCCGAAGCCTTT
55330306 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
28 1 0.02
29 19 0.44
30 7 0.16
31 16 0.37
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (30 bp):
ATATACTGGGCCGAAGCCTTTTCGATAAAC
Found at i:55330541 original size:25 final size:25
Alignment explanation
Indices: 55330513--55330582 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
55330503 CTCTTTTAAT
*
55330513 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
55330538 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
55330563 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
55330583 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:55330895 original size:27 final size:27
Alignment explanation
Indices: 55330785--55330898 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
55330775 GGGACAAAAT
* *
55330785 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAAGGGTAT-TTC
* *
55330812 AGTAATTCTA-CCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
55330838 AGTATTTCTACCTTACAAGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
*
55330865 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
55330892 GGTAATT
1 GGTAATT
55330899 TTGTAATTGA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
25 2 0.03
26 20 0.28
27 50 0.69
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:55330947 original size:27 final size:25
Alignment explanation
Indices: 55330882--55330949 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
55330872 CTACCCTACA
*
55330882 GGGGTATTTCGGTAATTTTGTAATTG
1 GGGGTATTT-GGTAATTTTGTAATCG
* **
55330908 AGGGTAAAATGGTAATTTTGTAAATCG
1 GGGGT-ATTTGGTAATTTTGT-AATCG
55330935 GGGGTACTTTGGTAA
1 GGGGTA-TTTGGTAA
55330950 ATTTACAAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.26, C:0.04, G:0.31, T:0.38
Consensus pattern (25 bp):
GGGGTATTTGGTAATTTTGTAATCG
Found at i:55330966 original size:27 final size:26
Alignment explanation
Indices: 55330917--55331143 Score: 109
Period size: 27 Copynumber: 8.4 Consensus size: 26
55330907 GAGGGTAAAA
** * *
55330917 TGGTAATTTTGTAAATCGGGGGTACTT
1 TGGTAATTTTACAAGTCGAGGGTA-TT
*
55330944 TGGTAAATTTACAAGTCGAGGGTATT
1 TGGTAATTTTACAAGTCGAGGGTATT
* * *
55330970 TCAGTAATTTTATAGGTCGAGGGTATT
1 T-GGTAATTTTACAAGTCGAGGGTATT
* * *
55330997 TCAGTAATTTCACAAATC-AGGGGTATTT
1 T-GGTAATTTTACAAGTCGA-GGGTA-TT
* *
55331025 TGGTAATTTTACAA-ACTAAGGGTATTT
1 TGGTAATTTTACAAGTC-GAGGGTA-TT
* *
55331052 TGGTAATTTTACAA-ACCAGGGGTATTT
1 TGGTAATTTTACAAGTCGA-GGGTA-TT
* ** * *
55331079 TGGTAATTTTATAAAACCAAAGGTATTT
1 TGGTAATTTTA-CAAGTCGAGGGTA-TT
* ** *
55331107 TAGTAATTTTACAAACCAAGGGTATTT
1 TGGTAATTTTACAAGTCGAGGGTA-TT
55331134 TGGTAATTTT
1 TGGTAATTTT
55331144 GTAAACCAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.04
27 136 0.81
28 23 0.14
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
TGGTAATTTTACAAGTCGAGGGTATT
Found at i:55331132 original size:82 final size:81
Alignment explanation
Indices: 55331018--55331188 Score: 252
Period size: 82 Copynumber: 2.1 Consensus size: 81
55331008 ACAAATCAGG
* * *
55331018 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
55331083 AATTTTATAAAACCAAA
66 AATTTTA-AAAACCAAA
** *
55331100 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGT
1 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
* **
55331165 AATTTTACAAACCAGG
66 AATTTTAAAAACCAAA
55331181 GGTATTTT
1 GGTATTTT
55331189 GGTGATTTGG
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 14 0.17
82 66 0.82
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (81 bp):
GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
AATTTTAAAAACCAAA
Found at i:55331158 original size:109 final size:109
Alignment explanation
Indices: 55330991--55331196 Score: 331
Period size: 109 Copynumber: 1.9 Consensus size: 109
55330981 ATAGGTCGAG
* * *
55330991 GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGT
1 GGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
55331056 AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCAAA
66 AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCAAA
* * ** *
55331100 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGT
1 GGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
*
55331165 AATTTTACAAACCAGGGGTATTTTGGTGATTT
66 AATTTTACAAACCAGGGGTATTTTGGTAATTT
55331197 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
109 88 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (109 bp):
GGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGT
AATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAAACCAAA
Found at i:55331203 original size:27 final size:27
Alignment explanation
Indices: 55330989--55331196 Score: 272
Period size: 27 Copynumber: 7.7 Consensus size: 27
55330979 TTATAGGTCG
** * *
55330989 AGGGTATTTCAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
55331016 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
55331043 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
55331070 GGGGTATTTTGGTAATTTTATAAAACCA
1 AGGGTATTTTGGTAATTTTA-CAAACCA
* *
55331098 AAGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
**
55331125 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
*
55331152 ATGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
55331179 GGGGTATTTTGGTGATTT
1 AGGGTATTTTGGTAATTT
55331197 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:55335700 original size:28 final size:29
Alignment explanation
Indices: 55335613--55335700 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 29
55335603 TGGGTCTAAC
*
55335613 GGGCCATATAAATGTGATTTGGGCATAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
* * *
55335642 AGGCCATATAAAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
* *
55335671 GGGCCATATGAATATGA-TTGGGCTTAAT
1 GGGCCATATAAATGTGATTTGGGCTTAAT
55335699 GG
1 GG
55335701 ACCAGATATA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 12 0.24
29 39 0.76
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (29 bp):
GGGCCATATAAATGTGATTTGGGCTTAAT
Found at i:55342801 original size:14 final size:15
Alignment explanation
Indices: 55342764--55342805 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
55342754 AAATACGAAC
55342764 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
55342780 TATA-ATGTGATA-G
1 TATATATGTGAAATG
55342793 TATATATGTGAAA
1 TATATATGTGAAA
55342806 GACTAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:55350192 original size:28 final size:28
Alignment explanation
Indices: 55350152--55350209 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
55350142 AGAAAGAAAG
*
55350152 AAAAAAAATATAGCTTATGGTATTTGAC
1 AAAAAAAATATAGCTTAGGGTATTTGAC
55350180 AAAAAAAATATAGCTTAGGGTATTTGAC
1 AAAAAAAATATAGCTTAGGGTATTTGAC
55350208 AA
1 AA
55350210 TTTGGAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.29
Consensus pattern (28 bp):
AAAAAAAATATAGCTTAGGGTATTTGAC
Found at i:55350869 original size:14 final size:15
Alignment explanation
Indices: 55350832--55350873 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
55350822 AAATATGAAC
55350832 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
55350848 TATA-ATGTGATA-G
1 TATATATGTGAAATG
55350861 TATATATGTGAAA
1 TATATATGTGAAA
55350874 GACAAACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:55351122 original size:41 final size:41
Alignment explanation
Indices: 55350998--55351156 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 41
55350988 GGATTTTCAA
* * **
55350998 TATGTGTTCTCGTGTAAGACCATGTCTGGGA-TGTTGGCATTAA
1 TATGTGAT-TCGTGTAAGACCATGTCTGGGACAG-TGGCA-TCG
*
55351041 TATGTGATTACGTGTAAGACCATGTCTGGGACA-TCAGCATCG
1 TATGTGATT-CGTGTAAGACCATGTCTGGGACAGT-GGCATCG
* *
55351083 TATTTGATTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 TATGTGATTCGTGTAAGACCATGTCTGGGACAGTGGCATCG
* * *
55351124 ATATGTGATAGCATGTAAGACCACGTCTGGGAC
1 -TATGTGAT-TCGTGTAAGACCATGTCTGGGAC
55351157 GTTGGCTTTG
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
41 28 0.29
42 19 0.20
43 50 0.52
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (41 bp):
TATGTGATTCGTGTAAGACCATGTCTGGGACAGTGGCATCG
Found at i:55356160 original size:14 final size:14
Alignment explanation
Indices: 55356128--55356168 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
55356118 GAGCCATCAA
55356128 CAAAGG-AGCAAAG
1 CAAAGGAAGCAAAG
* *
55356141 CGAAGGAAGAAAAG
1 CAAAGGAAGCAAAG
55356155 CAAAGGAAGCAAAG
1 CAAAGGAAGCAAAG
55356169 GAGCCTCGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.56, C:0.12, G:0.32, T:0.00
Consensus pattern (14 bp):
CAAAGGAAGCAAAG
Found at i:55359682 original size:48 final size:48
Alignment explanation
Indices: 55359623--55359766 Score: 216
Period size: 48 Copynumber: 3.0 Consensus size: 48
55359613 ATGTCCTTAG
* * * *
55359623 GAGCTTTATTGATCTGGTTTCGAGCCATGATATTAGCACTTCGGGTGT
1 GAGCTTCATTGATTTGGCTTCGAGCCATGATATTAGCACTTCGGGTGC
55359671 GAGCTTCATTGATTTGGCTTCGAGCCATGATATTAGCACTTCGGGTGC
1 GAGCTTCATTGATTTGGCTTCGAGCCATGATATTAGCACTTCGGGTGC
* * * *
55359719 GAGCTTCATTGATTTGGCTTCAAGCCATGATATTGGCACCTAGGGTGC
1 GAGCTTCATTGATTTGGCTTCGAGCCATGATATTAGCACTTCGGGTGC
55359767 AAGACTTTCG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.34
Consensus pattern (48 bp):
GAGCTTCATTGATTTGGCTTCGAGCCATGATATTAGCACTTCGGGTGC
Found at i:55363204 original size:27 final size:27
Alignment explanation
Indices: 55363169--55363235 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
55363159 GAACCTAATT
* *
55363169 TGATGAAATGACTATTTTACCGTTTTG
1 TGATAAAATGACTATTTTACCGTTCTG
55363196 TGATAAAATGACTATTTTACCGTTCTG
1 TGATAAAATGACTATTTTACCGTTCTG
*
55363223 TGGTAAAATGACT
1 TGATAAAATGACT
55363236 GAAATGTCCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (27 bp):
TGATAAAATGACTATTTTACCGTTCTG
Found at i:55374128 original size:11 final size:11
Alignment explanation
Indices: 55374112--55374144 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
55374102 GCCCACATCG
55374112 CAATAATATCA
1 CAATAATATCA
55374123 CAATAATATCA
1 CAATAATATCA
55374134 CAATAATATCA
1 CAATAATATCA
55374145 TACATGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (11 bp):
CAATAATATCA
Found at i:55381496 original size:14 final size:15
Alignment explanation
Indices: 55381466--55381500 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
55381456 GTGTGCCACC
55381466 TTTTAAAAAACCTAA
1 TTTTAAAAAACCTAA
*
55381481 TTTTAGAAAA-CTAA
1 TTTTAAAAAACCTAA
55381495 TTTTAA
1 TTTTAA
55381501 TCTTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40
Consensus pattern (15 bp):
TTTTAAAAAACCTAA
Found at i:55384436 original size:40 final size:40
Alignment explanation
Indices: 55384392--55384499 Score: 180
Period size: 40 Copynumber: 2.7 Consensus size: 40
55384382 AACCAGCACA
55384392 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
* *
55384432 AATGCCTTCGGGACTTAACCCGGTCATAATAACCCGCACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
* *
55384472 AATGCCTACGGGACTTAACCGGGTTATA
1 AATGCCTTCGGGACTTAACCCGGTTATA
55384500 TTTTTTTCCA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
Found at i:55391713 original size:40 final size:40
Alignment explanation
Indices: 55391659--55391776 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
55391649 CAGATGTAAC
* *
55391659 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
55391699 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTCATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
55391739 AACCCGCACGAATGCCTTCGGGACTTAACCGGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
55391777 TTTTTTTCCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:55399942 original size:80 final size:80
Alignment explanation
Indices: 55399848--55400001 Score: 265
Period size: 80 Copynumber: 1.9 Consensus size: 80
55399838 TACCAGCTCG
*
55399848 TAGCCTGCGAGTCTTT-ATGCCCAGATACAATTCCAGCGCGAAGCCTGCGGGTCTTTAAGCCCGG
1 TAGCCTGCGAGTCTTTCA-GCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
55399912 ATAACATTCCAGCATA
65 ATAACATTCCAGCATA
* *
55399928 TAGCCTGCGGGTCTTTCAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGAGTCTTTCAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
55399993 TAACATTCC
66 TAACATTCC
55400002 TCAAGTATCA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
80 69 0.99
81 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (80 bp):
TAGCCTGCGAGTCTTTCAGCCCAGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGA
TAACATTCCAGCATA
Found at i:55400001 original size:40 final size:40
Alignment explanation
Indices: 55399822--55399994 Score: 208
Period size: 40 Copynumber: 4.3 Consensus size: 40
55399812 CCTACGGGAA
* * * * * *
55399822 TTTAAACCCGG-TATAATACCAGCTCGTAGCCTGCGAGTC
1 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
* * *
55399861 TTTATGCCCAGATACAATTCCAGCGCGAAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
*
55399901 TTTAAGCCCGGATA-ACATTCCAGCA-TATAGCCTGCGGGTC
1 TTTAAGCCCGGATACA-ATTCCAGCACGA-AGCCTGCGGGTC
*
55399941 TTTCAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
1 TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
55399981 TTTAAGCCCGGATA
1 TTTAAGCCCGGATA
55399995 ACATTCCTCA
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
39 10 0.09
40 102 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTC
Found at i:55410471 original size:40 final size:40
Alignment explanation
Indices: 55410397--55410498 Score: 136
Period size: 40 Copynumber: 2.6 Consensus size: 40
55410387 AACCCAAGTA
* *
55410397 CCTTCGGGAT-TTAG-CCGGATATGGAAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGAAACTAGCACAAATG
**
55410436 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGAAACTAGCACAAATG
*
55410476 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
55410499 CATTCGAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 43 0.77
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGAAACTAGCACAAATG
Found at i:55411854 original size:22 final size:23
Alignment explanation
Indices: 55411822--55411867 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
55411812 ATCACCCCTC
55411822 CCTTTTCATTTCT-TTATTACTAA
1 CCTTTTCATTT-TATTATTACTAA
*
55411845 CCTTTT-ATTTTATTATTTCTAA
1 CCTTTTCATTTTATTATTACTAA
55411867 C
1 C
55411868 ATAAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.67
23 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (23 bp):
CCTTTTCATTTTATTATTACTAA
Found at i:55416670 original size:64 final size:63
Alignment explanation
Indices: 55416565--55416771 Score: 184
Period size: 67 Copynumber: 3.2 Consensus size: 63
55416555 CATCATGTGT
55416565 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACAAG--A-TA--ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
55416630 TAG
61 TAG
** * * * * * *
55416633 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATA-ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGT
55416698 AG
62 AG
** * * * *
55416700 ACAAGAGAGCTACAAGATAAACTAGCTAGGTCACATGGGTGGTACTAAGTGT-TACCATGT-G
1 ACAAGAGAGCTACAAGATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
55416761 TACAAGAGAGC
1 -ACAAGAGAGC
55416772 CGAACTATAT
Statistics
Matches: 113, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
61 1 0.01
62 17 0.15
63 1 0.01
64 21 0.19
65 10 0.09
66 20 0.18
67 29 0.26
68 14 0.12
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (63 bp):
ACAAGAGAGCTACAAGATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:55418987 original size:16 final size:15
Alignment explanation
Indices: 55418961--55418990 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
55418951 ATATGATCTA
55418961 GCTTTAAATATGAAC
1 GCTTTAAATATGAAC
55418976 GCTTTGAAATATGAA
1 GCTTT-AAATATGAA
55418991 TAAAATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (15 bp):
GCTTTAAATATGAAC
Found at i:55424648 original size:93 final size:93
Alignment explanation
Indices: 55424541--55424712 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
55424531 GCCCATAAGT
* * *
55424541 GAACTCGAACTCAACTCAACGAGCTT-GGGCGTTTGCATCCATGAGTGAAATCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAAATCGGACTCAACTCA
*
55424605 ACGGGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
55424634 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAAATCGGACTCAACTCAA
55424699 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
55424713 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAAATCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:55424708 original size:46 final size:46
Alignment explanation
Indices: 55424533--55424708 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
55424523 TGTAACCCGC
* * *
55424533 CCATAAGTGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * * * *
55424579 CCATGAGTGAAATCGGACTCAACTCAACGGGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
55424629 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
55424672 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
55424709 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 58 0.55
47 27 0.25
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:55424727 original size:46 final size:46
Alignment explanation
Indices: 55424584--55424727 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 46
55424574 TGCATCCATG
* * * * *
55424584 AGTGAAATCGGACTCAACTCAACGGGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
55424632 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
55424677 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
55424723 AGTGA
1 AGTGA
55424728 CATGTCACTT
Statistics
Matches: 75, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.45
47 27 0.36
48 5 0.07
50 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:55427746 original size:43 final size:43
Alignment explanation
Indices: 55427698--55427802 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
55427688 TCACACCAAG
* *
55427698 GGTCTTACACGAAATCATAATACGATGCCAATGTCCCAAACAT
1 GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAAACAT
* * *
55427741 GGTCTTACACGTCATCTTAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAAACAT
*
55427784 GGTCTTACATGTAATCATA
1 GGTCTTACACGTAATCATA
55427803 TCTAGATAAC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAAACAT
Found at i:55429568 original size:81 final size:82
Alignment explanation
Indices: 55429472--55429649 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 82
55429462 AATACTCGAT
* * *
55429472 ATCTCGCACACTAAGTGTCGTACATAG-CTGAAGCTATCTC-AAATCACACACTAAGTGCTATAT
1 ATCTCGCACACTAAGTGCCATACATAGTC-GAAGCTATCTCGAAATCACACACTAAGTGCCATAT
55429535 ATAGCTAAAGCTATCTCG
65 ATAGCTAAAGCTATCTCG
* ** * *
55429553 ATCTCGCACACTAAGTGCCATATATAGTCGAAGCTATCTCGATCTCTCACACTAAGTGCCATGTA
1 ATCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCGAAATCACACACTAAGTGCCATATA
* *
55429618 TAGCTGAAGCTATGTCG
66 TAGCTAAAGCTATCTCG
*
55429635 A-ATCGCACACTAAGT
1 ATCTCGCACACTAAGT
55429650 ACCACATATA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
81 48 0.57
82 36 0.43
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (82 bp):
ATCTCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCGAAATCACACACTAAGTGCCATATA
TAGCTAAAGCTATCTCG
Found at i:55429576 original size:41 final size:41
Alignment explanation
Indices: 55429472--55429659 Score: 220
Period size: 41 Copynumber: 4.6 Consensus size: 41
55429462 AATACTCGAT
* * *
55429472 ATCTCGCACACTAAGTGTCGTACATAGCTGAAGCTATCTC-
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCG
** * * *
55429512 AAATCACACACTAAGTGCTATATATAGCTAAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCG
55429553 ATCTCGCACACTAAGTGCCATATATAG-TCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCCATATATAGCT-GAAGCTATCTCG
* * *
55429594 ATCTCTCACACTAAGTGCCATGTATAGCTGAAGCTATGTCG
1 ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCG
* * *
55429635 A-ATCGCACACTAAGTACCACATATA
1 ATCTCGCACACTAAGTGCCATATATA
55429660 ATTGATTTGT
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
40 52 0.42
41 71 0.57
42 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (41 bp):
ATCTCGCACACTAAGTGCCATATATAGCTGAAGCTATCTCG
Found at i:55431906 original size:94 final size:94
Alignment explanation
Indices: 55431793--55431968 Score: 289
Period size: 94 Copynumber: 1.9 Consensus size: 94
55431783 GATAAAAAGG
* * * * * *
55431793 GGATTTGATATGTTTCTTATCAAATAAGTAAATAGAATTTAATTATTATTTAAAATAGTTTTAGA
1 GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTAAAAGAGTTTTAGA
55431858 TAAATAATAATTAAAATTCAAAATCAAAA
66 TAAATAATAATTAAAATTCAAAATCAAAA
*
55431887 GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTACAAGAGTTTTAGA
1 GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTAAAAGAGTTTTAGA
55431952 TAAATAATAATTAAAAT
66 TAAATAATAATTAAAAT
55431969 AGAATTTAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 75 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.39
Consensus pattern (94 bp):
GGATTTGATATATTGCTTATCAAATAAGGAAATACAATTTAATTACTATTTAAAAGAGTTTTAGA
TAAATAATAATTAAAATTCAAAATCAAAA
Found at i:55434223 original size:58 final size:57
Alignment explanation
Indices: 55434076--55434224 Score: 151
Period size: 57 Copynumber: 2.6 Consensus size: 57
55434066 CATATAATAC
* * *
55434076 GATTACCAGTCTAGGCTAAATCCTTTATATAACATATGCTCAGAGGGGCTTGATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTTTATAACATATGCTCAGAGAGGCTTGATTAG
* ** * * *
55434133 GATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTC-GAGAGG-TATTATATCAG
1 GATTACCAGTCCAGGCTAAATCCTTTTTATAACATATGCTCAGAGAGGCT-TGAT-T-AG
*
55434191 GATTACCCGTCC-GAGCTAAATCCTTTTTATAACA
1 GATTACCAGTCCAG-GCTAAATCCTTTTTATAACA
55434225 AGGTCAATGG
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
55 1 0.01
56 8 0.11
57 36 0.49
58 28 0.38
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (57 bp):
GATTACCAGTCCAGGCTAAATCCTTTTTATAACATATGCTCAGAGAGGCTTGATTAG
Found at i:55434791 original size:20 final size:21
Alignment explanation
Indices: 55434756--55434801 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
55434746 AGCACATGTA
* *
55434756 TTCATTAAATTTTTATAATTT
1 TTCATCAAATTTTTATAACTT
55434777 TTCATCAAA-TTTTATAACTT
1 TTCATCAAATTTTTATAACTT
55434797 TTCAT
1 TTCAT
55434802 TTTAGTCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.57
Consensus pattern (21 bp):
TTCATCAAATTTTTATAACTT
Found at i:55436708 original size:6 final size:6
Alignment explanation
Indices: 55436690--55436804 Score: 103
Period size: 6 Copynumber: 18.7 Consensus size: 6
55436680 AAGAAACATT
*
55436690 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
55436739 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
55436790 A-CAGA ATCAGA ATCA
1 ATCAGA ATCAGA ATCA
55436805 AAATGTGAAT
Statistics
Matches: 90, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
5 6 0.07
6 71 0.79
7 10 0.11
8 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:55436737 original size:31 final size:31
Alignment explanation
Indices: 55436674--55436804 Score: 185
Period size: 31 Copynumber: 4.3 Consensus size: 31
55436664 TAACCCATTA
* * *
55436674 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* *
55436704 CAGAATCAGAATCAGAATCAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
55436735 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
55436766 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
55436797 CAGAATCA
1 CAGAATCA
55436805 AAATGTGAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.18
31 72 0.80
32 2 0.02
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:55436763 original size:25 final size:25
Alignment explanation
Indices: 55436710--55436804 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 25
55436700 GAATCAGAAT
55436710 CAGAATCAGAATCAGGTGA-CA-G-AA
1 CAGAATCAGAATCA-GT-ATCAGGTAA
55436734 TCAGAATCAGAATCAGTATCAGGTAA
1 -CAGAATCAGAATCAGTATCAGGTAA
55436760 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAG------AATCAGAATCAGTATCAGGTAA
55436791 CAGAATCAGAATCA
1 CAGAATCAGAATCA
55436805 AAATGTGAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 18
0.77 0.00 0.23
Matches are distributed among these distances:
23 1 0.02
24 4 0.07
25 29 0.48
26 2 0.03
31 25 0.41
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGTATCAGGTAA
Found at i:55436765 original size:19 final size:19
Alignment explanation
Indices: 55436741--55436804 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 19
55436731 GAATCAGAAT
55436741 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
55436760 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
55436772 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
55436791 CAGAATCAGAATCA
1 CAGAATCAGTATCA
55436805 AAATGTGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
12 9 0.26
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 22 0.63
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:55437007 original size:26 final size:27
Alignment explanation
Indices: 55436944--55437017 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 27
55436934 TGCTCAGTAT
* * *
55436944 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
55436971 CAGATATTGTGGCAGAGCCACCA-AAA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* *
55436997 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
55437018 TTAACAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 21 0.50
27 21 0.50
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:55437204 original size:22 final size:22
Alignment explanation
Indices: 55437176--55437240 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
55437166 GCAAATACGT
*
55437176 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
55437198 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
55437220 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
55437241 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:55437725 original size:27 final size:27
Alignment explanation
Indices: 55437685--55437834 Score: 228
Period size: 27 Copynumber: 5.6 Consensus size: 27
55437675 TTCCCCACAA
* *
55437685 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
55437712 GGTATTTTGCTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
55437739 GGTATTTCGGTAATTCTACCCTAAAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
55437766 GGTATTTCGGTAATTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
55437793 GGTATTCCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
55437820 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
55437835 TCACAAATTA
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:55437861 original size:81 final size:81
Alignment explanation
Indices: 55437685--55437853 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
55437675 TTCCCCACAA
* * **
55437685 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGCTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCCACCCTACAAGGGTATTCCGCTAATTCTACCCTACAGGGGTATTTCGGT
* *
55437750 AATTCTACCCTAAAGG
66 AATTCTACACAAAAGG
* * *
55437766 GGTATTTCGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCCACCCTACAAGGGTATTCCGCTAATTCTACCCTACAGGGGTATTTCGGT
55437831 AATT-T-CACAAATTAGG
66 AATTCTACACAAA--AGG
55437847 GGTATTT
1 GGTATTT
55437854 TTGTAATTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 4 0.05
80 1 0.01
81 72 0.94
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (81 bp):
GGTATTTCGGTAATTCCACCCTACAAGGGTATTCCGCTAATTCTACCCTACAGGGGTATTTCGGT
AATTCTACACAAAAGG
Found at i:55437886 original size:81 final size:81
Alignment explanation
Indices: 55437685--55437887 Score: 205
Period size: 81 Copynumber: 2.5 Consensus size: 81
55437675 TTCCCCACAA
* * ** *
55437685 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGCTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
* *
55437750 AATTCTACCCTAAAGG
66 AATTCTACACAAAAGG
** * ** *
55437766 GGTATTTCGGTAATTCTACCCTACAAGGGTATTCCGGTAATTCTACCCTATAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
55437831 AATT-T-CACAAATTAGG
66 AATTCTACACAAA--AGG
** * *
55437847 GGTATTTTTGTAATTTTA-TAAACTAGGGGTATTTTGGTAAT
1 GGTATTTCGGTAATTCTACCAAAC-AGGGGTATTTTGGTAAT
55437888 CTTATAAACC
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
79 4 0.04
80 3 0.03
81 94 0.93
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCAAACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
AATTCTACACAAAAGG
Found at i:55437905 original size:81 final size:81
Alignment explanation
Indices: 55437819--55437997 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
55437809 TACCCTATAG
** ** * *
55437819 GGGTATTTCGGTAATTTCACAAATTAGGGGTATTTTTGTAATTTTATAAACTAG-GGGTATTTTG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATAAA-TAGAGGGTATTTGG
55437883 GTAATCTTATAAACCAA
65 GTAATCTTATAAACCAA
* * * ** *
55437900 TGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTGGG
1 GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATAAATAGAGGGTATTTGGG
* *
55437965 TAATTTTGTAAACCAA
66 TAATCTTATAAACCAA
55437981 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
55437998 TATAAATCGA
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 2 0.02
81 80 0.98
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTATAAATAGAGGGTATTTGGG
TAATCTTATAAACCAA
Found at i:55437944 original size:27 final size:27
Alignment explanation
Indices: 55437817--55438003 Score: 196
Period size: 27 Copynumber: 6.9 Consensus size: 27
55437807 TCTACCCTAT
* * * **
55437817 AGGGGTATTTCGGTAATTTCACAAATT
1 AGGGGTATTTTGGTAATTTTATAAACC
* *
55437844 AGGGGTATTTTTGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAACC
*
55437871 AGGGGTATTTTGGTAATCTTATAAACC
1 AGGGGTATTTTGGTAATTTTATAAACC
** *
55437898 AATGGTATTTTAGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTATAAACC
** *
55437925 AGGGGTATTTTGGTAATTTTATTGATC
1 AGGGGTATTTTGGTAATTTTATAAACC
* *
55437952 -GAGGGTATTTGGGTAATTTTGTAAACC
1 AG-GGGTATTTTGGTAATTTTATAAACC
* *
55437979 AAGGGTATTTTAGTAATTTTATAAA
1 AGGGGTATTTTGGTAATTTTATAAA
55438004 TCGAGGGTAA
Statistics
Matches: 131, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 130 0.99
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTATAAACC
Found at i:55437998 original size:54 final size:54
Alignment explanation
Indices: 55437817--55438012 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 54
55437807 TCTACCCTAT
* * * * * *
55437817 AGGGGTATTTCGGTAATTTCACAAAT-TAGGGGTATTTTTGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAATCGA-GGGTATTTTAGTAATTTTATAAACC
* * * *
55437871 AGGGGTATTTTGGTAATCTTATAAACCAATGGTATTTTAGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTATAAACC
** ** *
55437925 AGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTGGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTATAAACC
* *
55437979 AAGGGTATTTTAGTAATTTTATAAATCGAGGGTA
1 AGGGGTATTTTGGTAATTTTATAAATCGAGGGTA
55438013 AAATGGTAAT
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
54 118 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTTAGTAATTTTATAAACC
Found at i:55438010 original size:27 final size:27
Alignment explanation
Indices: 55437819--55438039 Score: 187
Period size: 27 Copynumber: 8.2 Consensus size: 27
55437809 TACCCTATAG
* * * *
55437819 GGGTATTTCGGTAATTTCACAAAT-TA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
55437845 GGGGTATTTTTGTAATTTTATAAA-CTA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * *
55437872 GGGGTATTTTGGTAATCTTATAAACCAA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * *
55437900 TGGTATTTTAGTAATTTTATAAA-CCA
1 GGGTATTTTGGTAATTTTATAAATCGA
**
55437926 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * * *
55437954 GGGTATTTGGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
*
55437981 GGGTATTTTAGTAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
55438008 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
55438035 GGGTA
1 GGGTA
55438040 AAATGCGAAT
Statistics
Matches: 158, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.01
27 152 0.96
28 4 0.03
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:55438012 original size:81 final size:81
Alignment explanation
Indices: 55437844--55438039 Score: 234
Period size: 81 Copynumber: 2.4 Consensus size: 81
55437834 TTCACAAATT
* * * * *
55437844 AGGGGTATTTTTGTAATTTTA-TAAACTAGGGGTATTTTGGTAATCTTATAAACCAATGGTATTT
1 AGGGGTATTTTGGTAATTTTATTAATCGA-GGGTATTTGGGTAATCTTATAAACCAAGGGTATTT
55437908 TAGTAATTTTATAAACC
65 TAGTAATTTTATAAACC
* * *
55437925 AGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTGGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTATTAATCGAGGGTATTTGGGTAATCTTATAAACCAAGGGTATTTT
*
55437990 AGTAATTTTATAAATC
66 AGTAATTTTATAAACC
*** * *
55438006 -GAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 AG-GGGTATTTTGGTAATTTTATTAATCGAGGGTA
55438040 AAATGCGAAT
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 93 0.95
82 4 0.04
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTATTAATCGAGGGTATTTGGGTAATCTTATAAACCAAGGGTATTTT
AGTAATTTTATAAACC
Found at i:55438040 original size:27 final size:28
Alignment explanation
Indices: 55437991--55438054 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 28
55437981 GGGTATTTTA
*
55437991 GTAATTTTATAAATCGAGGGTAAAATG-
1 GTAATTCTATAAATCGAGGGTAAAATGC
55438018 GTAATTCTATAAATCGAGGGTAAAATGC
1 GTAATTCTATAAATCGAGGGTAAAATGC
55438046 G-AATTCTAT
1 GTAATTCTAT
55438055 CTTATTTCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (28 bp):
GTAATTCTATAAATCGAGGGTAAAATGC
Found at i:55438095 original size:27 final size:27
Alignment explanation
Indices: 55438065--55438151 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
55438055 CTTATTTCAA
*
55438065 TAATTTTACAAATTGAGGATA-TTTGGG
1 TAATTTTACAAATCGAGGATACTTT-GG
* * *
55438092 TAATTTTATAAATCGGGGTTACTTTGG
1 TAATTTTACAAATCGAGGATACTTTGG
* * * *
55438119 TAATTTTACAAGTCGAGGGTATTTTAG
1 TAATTTTACAAATCGAGGATACTTTGG
55438146 TAATTT
1 TAATTT
55438152 GGTAAACTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
27 46 0.94
28 3 0.06
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.44
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGATACTTTGG
Found at i:55442099 original size:28 final size:29
Alignment explanation
Indices: 55442051--55442141 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
55442041 GGTGTTACAT
* * * *
55442051 ACATGCATATGGCCCACTAGGTCC-AATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
55442079 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
55442108 ACATTCATATGGTCCATCTA-GCCCGAATC
1 ACATTCATATGGCCCAT-TAGGCCCAAATC
55442137 A-ATTC
1 ACATTC
55442142 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.45
29 27 0.51
30 2 0.04
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:55443490 original size:47 final size:47
Alignment explanation
Indices: 55443419--55443819 Score: 660
Period size: 47 Copynumber: 8.4 Consensus size: 47
55443409 TATCACAGTT
* * * * *
55443419 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
*
55443466 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
55443513 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
55443560 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
55443609 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
55443658 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
55443705 ATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
55443752 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
55443801 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
55443820 GTAACAAAAT
Statistics
Matches: 338, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 218 0.64
48 2 0.01
49 118 0.35
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:55443628 original size:27 final size:27
Alignment explanation
Indices: 55443598--55443680 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
55443588 ATTTGGCCTT
55443598 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* * *
55443625 ATCACAT-TGGC---CA--TTCGGCCTT-
1 ATCACATAT-ACATACACTTTC-ACATTC
55443647 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
55443674 ATCACAT
1 ATCACAT
55443681 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
22 11 0.27
23 4 0.10
24 2 0.05
25 2 0.05
26 4 0.10
27 18 0.44
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:55443718 original size:16 final size:17
Alignment explanation
Indices: 55443693--55443765 Score: 50
Period size: 16 Copynumber: 4.6 Consensus size: 17
55443683 GCCATTCGGC
55443693 CTTATCACATACATACA
1 CTTATCACATACATACA
*
55443710 CTT-TCACATTCAT-CA
1 CTTATCACATACATACA
** * *
55443725 CATTGGC-CATTCA-GC-
1 C-TTATCACATACATACA
55443740 CTTATCACATACATACA
1 CTTATCACATACATACA
55443757 CTT-TCACAT
1 CTTATCACAT
55443766 TCATCACATT
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
14 3 0.07
15 9 0.20
16 25 0.57
17 7 0.16
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.33
Consensus pattern (17 bp):
CTTATCACATACATACA
Found at i:55443744 original size:192 final size:190
Alignment explanation
Indices: 55443419--55443819 Score: 705
Period size: 192 Copynumber: 2.1 Consensus size: 190
55443409 TATCACAGTT
* * * *
55443419 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCA
1 ATACACTTTCACATT-CATCACATTGACCATTCGGCCTTATCATATACATACACTTTCACATTCA
*
55443483 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGC
65 TCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAGC
*
55443548 CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
130 CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
*
55443609 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGACCATTCGGCCTTAT--CATATACATACACTTTCACATTC
55443674 ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAG
64 ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAG
55443739 CCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
129 CCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
55443801 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
55443820 GTAACAAAAT
Statistics
Matches: 201, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
190 34 0.17
191 2 0.01
192 165 0.82
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.33
Consensus pattern (190 bp):
ATACACTTTCACATTCATCACATTGACCATTCGGCCTTATCATATACATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAGCC
TTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
Found at i:55448730 original size:31 final size:31
Alignment explanation
Indices: 55448692--55448831 Score: 124
Period size: 31 Copynumber: 4.5 Consensus size: 31
55448682 TTGTAGCCAA
* *
55448692 AGCTACCACTATTCACTGCTCAGGTACCTAG
1 AGCTACCACTTTTCACTGATCAGGTACCTAG
* * * *
55448723 AGCTACCATTTTTCACTAATCAAGTAGCCGA-
1 AGCTACCACTTTTCACTGATCAGGTA-CCTAG
* * *
55448754 AGCTACTACTTTTCACTGATTAGGTAGCT-G
1 AGCTACCACTTTTCACTGATCAGGTACCTAG
* * *
55448784 AAGCTACCACTTTTCACTGATTAGGTA-GTTG
1 -AGCTACCACTTTTCACTGATCAGGTACCTAG
55448815 AAGCTACCACTTTTCAC
1 -AGCTACCACTTTTCAC
55448832 ATTGTACACA
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
30 2 0.02
31 85 0.94
32 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTACCTAG
Found at i:55448759 original size:62 final size:62
Alignment explanation
Indices: 55448684--55448831 Score: 172
Period size: 62 Copynumber: 2.4 Consensus size: 62
55448674 CTTGTCACTT
* * * *
55448684 GTAGCCAAAGCTACCACTATTCACTGCTCAGGTACCT-AGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTACCTGA-AGCTACCACTTTTCACTAATCAA
* * * * * *
55448746 GTAGCCGAAGCTACTACTTTTCACTGATTAGGTAGCTGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAGGTACCTGAAGCTACCACTTTTCACTAATCAA
**
55448808 GTAGTTGAAGCTACCACTTTTCAC
1 GTAGCCGAAGCTACCACTTTTCAC
55448832 ATTGTACACA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
62 71 0.99
63 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAGGTACCTGAAGCTACCACTTTTCACTAATCAA
Found at i:55448872 original size:32 final size:30
Alignment explanation
Indices: 55448824--55448936 Score: 93
Period size: 33 Copynumber: 3.5 Consensus size: 30
55448814 GAAGCTACCA
*
55448824 CTTTTCACATTGTACACACAAGGCATACATTTC
1 CTTTTCA-AGTGTACACACAAGG--TACATTTC
**
55448857 CTTTTCAAGTGTACACACAAAGTGTATGTTTC
1 CTTTTCAAGTGTACACAC-AAG-GTACATTTC
55448889 CTCTTT-AAGTTGTACACACACAGTGTACATTTC
1 CT-TTTCAAG-TGTACACACA-AG-GTACATTTC
*
55448922 CTTTTCCAATTGTAC
1 CTTTT-CAAGTGTAC
55448937 CTTTTAGGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
32 25 0.37
33 39 0.58
34 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (30 bp):
CTTTTCAAGTGTACACACAAGGTACATTTC
Found at i:55448908 original size:33 final size:32
Alignment explanation
Indices: 55448853--55448936 Score: 98
Period size: 33 Copynumber: 2.6 Consensus size: 32
55448843 AAGGCATACA
55448853 TTTCCTTTTCAAGTGTACACACAAAGTGTATG
1 TTTCCTTTTCAAGTGTACACACAAAGTGTATG
* **
55448885 TTTCCTCTTT-AAGTTGTACACACACAGTGTACA
1 TTTCCT-TTTCAAG-TGTACACACAAAGTGTATG
*
55448918 TTTCCTTTTCCAATTGTAC
1 TTTCCTTTT-CAAGTGTAC
55448937 CTTTTAGGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
32 12 0.27
33 30 0.68
34 2 0.05
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (32 bp):
TTTCCTTTTCAAGTGTACACACAAAGTGTATG
Found at i:55454220 original size:28 final size:29
Alignment explanation
Indices: 55454183--55454253 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
55454173 AAGTCTACAT
* * *
55454183 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCAATAGGCCCAAATA
*
55454211 TCATTCATATGGCCCAATAGGCCCAAATA
1 ACATTCATATGGCCCAATAGGCCCAAATA
55454240 ACATTCATATGGCC
1 ACATTCATATGGCC
55454254 TATCCGGCCC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 21 0.57
29 16 0.43
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (29 bp):
ACATTCATATGGCCCAATAGGCCCAAATA
Found at i:55457405 original size:47 final size:47
Alignment explanation
Indices: 55457346--55458199 Score: 1429
Period size: 47 Copynumber: 18.1 Consensus size: 47
55457336 GAAATGATAG
* *
55457346 TAAGGCCTAATGGCCGATGTGATGATTGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55457393 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55457440 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
55457487 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55457534 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
55457581 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55457628 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55457675 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55457722 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
55457771 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
55457818 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
55457865 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
55457912 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
55457961 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55458008 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55458055 TAAGGCCTAATGGCCGATCTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
55458102 TAAGCCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
55458149 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
55458196 TAAG
1 TAAG
55458200 TCCCGAAGGG
Statistics
Matches: 774, Mismatches: 29, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
47 682 0.88
49 92 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:55458374 original size:37 final size:37
Alignment explanation
Indices: 55458318--55458396 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
55458308 CCGAGCTCTA
* *
55458318 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
55458355 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
55458392 AAGAC
1 AAGAC
55458397 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:55466439 original size:25 final size:25
Alignment explanation
Indices: 55466411--55466462 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
55466401 GAGGTCGTTG
55466411 TACAGCAGGGTTTGCTCTCAGGTAC
1 TACAGCAGGGTTTGCTCTCAGGTAC
55466436 TACAGCAGGGTTTGCTCTCAGGTAC
1 TACAGCAGGGTTTGCTCTCAGGTAC
55466461 TA
1 TA
55466463 TGTAAACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (25 bp):
TACAGCAGGGTTTGCTCTCAGGTAC
Found at i:55468874 original size:20 final size:20
Alignment explanation
Indices: 55468845--55468885 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
55468835 ATCACATGTA
*
55468845 TTCATAAAATTTTATAATTT
1 TTCATAAAATTTTACAATTT
*
55468865 TTCATCAAATTTTACAATTT
1 TTCATAAAATTTTACAATTT
55468885 T
1 T
55468886 ACAATTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (20 bp):
TTCATAAAATTTTACAATTT
Found at i:55469208 original size:21 final size:21
Alignment explanation
Indices: 55469182--55469223 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
55469172 GGTTTAAGAT
55469182 CACATAAAATAAGATGATTTC
1 CACATAAAATAAGATGATTTC
55469203 CACATAAAATAAGATGATTTC
1 CACATAAAATAAGATGATTTC
55469224 TTTTATCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (21 bp):
CACATAAAATAAGATGATTTC
Found at i:55475089 original size:19 final size:19
Alignment explanation
Indices: 55475053--55475091 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
55475043 TTTTCATCAT
* *
55475053 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
55475072 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
55475091 A
1 A
55475092 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:55475587 original size:29 final size:29
Alignment explanation
Indices: 55475555--55475617 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
55475545 GTGACAGAGT
* * *
55475555 CACCAGATATAGATATTTTGTGGCAGT-GC
1 CACCAGAAACAGATAATTTGTGGCA-TAGC
55475584 CACCA-AAACAGATAATTTGTGGCATAGC
1 CACCAGAAACAGATAATTTGTGGCATAGC
55475612 CACCAG
1 CACCAG
55475618 GACGCTTCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.03
28 23 0.79
29 5 0.17
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (29 bp):
CACCAGAAACAGATAATTTGTGGCATAGC
Found at i:55475769 original size:27 final size:27
Alignment explanation
Indices: 55475726--55475782 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
55475716 TTAACCCTAG
*
55475726 GGGTATAAAGGTCATTTAGCATACATA
1 GGGTATAAAGGTAATTTAGCATACATA
* *
55475753 GGGTATAATGGTAATTTTGCATACATA
1 GGGTATAAAGGTAATTTAGCATACATA
55475780 GGG
1 GGG
55475783 ATATTCTAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (27 bp):
GGGTATAAAGGTAATTTAGCATACATA
Found at i:55482879 original size:19 final size:19
Alignment explanation
Indices: 55482855--55482893 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
55482845 TTTTCATCAT
*
55482855 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAATAATAAA
* *
55482874 AGTAAAGCAAAATCATAAA
1 AGTAAAACAAAATAATAAA
55482893 A
1 A
55482894 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.05, G:0.08, T:0.18
Consensus pattern (19 bp):
AGTAAAACAAAATAATAAA
Found at i:55483858 original size:40 final size:40
Alignment explanation
Indices: 55483707--55483898 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
55483697 TTGAATGATG
* * *
55483707 TCCGGGCTAAGTCCCGAAGGCATTGTGCTA--AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATT-TG-TACGAGTTACTAAA
* * * * * *
55483747 TCTGGACTAAGAT-CCGAAGGCATTTATGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
55483787 TCCGGGCTATG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
*
55483826 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
55483867 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
55483899 AGCTATATCC
Statistics
Matches: 123, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 86 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:55483913 original size:79 final size:79
Alignment explanation
Indices: 55483760--55483914 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
55483750 GGACTAAGAT
* * * **
55483760 CCGAAGGCATTTATGCGAGATACTAATTCCGGGCTATGCCTGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTATACGAGATACTAATACCGGGCTATGCCCGAAGGCATTTGAACGAGTTACTAA
55483825 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
55483839 CCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTATACGAGATACTAAT-ACCGGGCTATG-CCCGAAGGCATTTGAACGAGTTA-C
*
55483902 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
55483915 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTATACGAGATACTAATACCGGGCTATGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:55495455 original size:79 final size:81
Alignment explanation
Indices: 55495319--55495503 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
55495309 TTGAATGATG
*
55495319 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
55495383 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
55495398 TTCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
55495460 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
55495478 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55495504 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.65
80 31 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:55495517 original size:40 final size:40
Alignment explanation
Indices: 55495320--55495503 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
55495310 TGAATGATGT
* * * *
55495320 CCGGGCTAAGTCCCGAAGGCA-TTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
55495360 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
55495400 CCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
55495438 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
55495479 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
55495504 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:55495525 original size:79 final size:79
Alignment explanation
Indices: 55495372--55495536 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
55495362 GGACTAAGAT
* ***
55495372 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
55495437 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
55495451 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
55495514 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
55495530 CCGAAGG
1 CCGAAGG
55495537 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:55505873 original size:26 final size:24
Alignment explanation
Indices: 55505843--55505892 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
55505833 TAAATAAAAA
*
55505843 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
55505869 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
55505893 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:55505920 original size:33 final size:35
Alignment explanation
Indices: 55505882--55505947 Score: 91
Period size: 33 Copynumber: 1.9 Consensus size: 35
55505872 TAAAAACATA
*
55505882 AAAACAAATATTAAAACAA-ATA-AAATTAATACT
1 AAAACAAATATTAAAACAATACACAAATTAATACT
* *
55505915 AAAACAATTCTTAAAACAATACACAAATTAATA
1 AAAACAAATATTAAAACAATACACAAATTAATA
55505948 ATATAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 17 0.61
34 2 0.07
35 9 0.32
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (35 bp):
AAAACAAATATTAAAACAATACACAAATTAATACT
Found at i:55505998 original size:15 final size:16
Alignment explanation
Indices: 55505968--55506000 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
55505958 AAATGGTTAT
55505968 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
55505985 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
55506000 A
1 A
55506001 AAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:55509203 original size:27 final size:27
Alignment explanation
Indices: 55509173--55509235 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
55509163 AAATCACCAA
55509173 AATACCCTTGTA-GTGTAAAATGACAAT
1 AATACCCTTGTATG-GTAAAATGACAAT
* * *
55509200 AATACCCCTGTATGGTAGAATGACGAT
1 AATACCCTTGTATGGTAAAATGACAAT
*
55509227 TATACCCTT
1 AATACCCTT
55509236 ATGTTCCGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (27 bp):
AATACCCTTGTATGGTAAAATGACAAT
Found at i:55509597 original size:28 final size:28
Alignment explanation
Indices: 55509544--55509609 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
55509534 GCATATGATA
*
55509544 CTGATTCTG-TAATGGGCTTAGACCCAC
1 CTGATTCTGTTAATGGGCTAAGACCCAC
* *
55509571 CTGATTCTGTTATTGGGCTAAGGCCCAC
1 CTGATTCTGTTAATGGGCTAAGACCCAC
*
55509599 CTGATACTGTT
1 CTGATTCTGTT
55509610 TCTGGGATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 9 0.26
28 25 0.74
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (28 bp):
CTGATTCTGTTAATGGGCTAAGACCCAC
Found at i:55510606 original size:23 final size:23
Alignment explanation
Indices: 55510580--55510636 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
55510570 TTAAATTTTG
* *
55510580 AATAATTATAATTATTTAGTGAT
1 AATAATTAGAATTATTTAATGAT
* *
55510603 AATATTTAGGATTATTTAATGAT
1 AATAATTAGAATTATTTAATGAT
*
55510626 AATATTTAGAA
1 AATAATTAGAA
55510637 AAAATCTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.46
Consensus pattern (23 bp):
AATAATTAGAATTATTTAATGAT
Found at i:55510610 original size:13 final size:13
Alignment explanation
Indices: 55510587--55510634 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
55510577 TTGAATAATT
55510587 ATAATTATTTAGTG
1 ATAA-TATTTAGTG
55510601 ATAATATTTAG-G
1 ATAATATTTAGTG
*
55510613 AT--TATTTAATG
1 ATAATATTTAGTG
55510624 ATAATATTTAG
1 ATAATATTTAG
55510635 AAAAAATCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
10 6 0.21
11 3 0.10
12 3 0.10
13 13 0.45
14 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
ATAATATTTAGTG
Found at i:55511245 original size:18 final size:18
Alignment explanation
Indices: 55511224--55511274 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
55511214 ACAATTCTTT
55511224 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCTCC
*
55511242 TCTCTT-TATCTATTTCTTC
1 TCTCTTCT-TCT-TTTCTCC
*
55511261 T-TATTCTTCTTTTC
1 TCTCTTCTTCTTTTC
55511275 CTCTATAGCC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 5 0.18
18 15 0.54
19 8 0.29
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (18 bp):
TCTCTTCTTCTTTTCTCC
Found at i:55512364 original size:26 final size:25
Alignment explanation
Indices: 55512335--55512393 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
55512325 ATTTACTAAA
* * *
55512335 ATACGCTAAGTATGAAAATTACCATT
1 ATACCCTAAGTA-CAAAATGACCATT
*
55512361 ATACCCCTAGGTACAAAATGACCATT
1 ATA-CCCTAAGTACAAAATGACCATT
55512387 ATACCCT
1 ATACCCT
55512394 TAGGGTTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.14
26 17 0.61
27 7 0.25
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (25 bp):
ATACCCTAAGTACAAAATGACCATT
Found at i:55512540 original size:28 final size:27
Alignment explanation
Indices: 55512500--55512612 Score: 136
Period size: 28 Copynumber: 4.1 Consensus size: 27
55512490 GGAGGAAGCG
55512500 TTCTAGTGGCTCTGCCACAAGTATCTGT
1 TTCTAGTGGCTCTGCCACAA-TATCTGT
* *
55512528 TTCTGGTGGCTCTGTCACAAATATCTGT
1 TTCTAGTGGCTCTGCCAC-AATATCTGT
*
55512556 TTCTAGTGGCCCTGCCACAATTATCTGT
1 TTCTAGTGGCTCTGCCACAA-TATCTGT
* * * *
55512584 ATCTGGTGACTCTGTCACAATATCTGT
1 TTCTAGTGGCTCTGCCACAATATCTGT
55512611 TT
1 TT
55512613 TGGCAGCCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 10 0.14
28 60 0.83
29 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (27 bp):
TTCTAGTGGCTCTGCCACAATATCTGT
Found at i:55512589 original size:56 final size:55
Alignment explanation
Indices: 55512500--55512612 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 55
55512490 GGAGGAAGCG
* * *
55512500 TTCTAGTGGCTCTGCCACAAGTATCTGTTTCTGGTGGCTCTGTCACAAATATCTGT
1 TTCTAGTGGCCCTGCCACAAGTATCTGTATCTGGTGACTCTGTCAC-AATATCTGT
*
55512556 TTCTAGTGGCCCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAATATCTGT
1 TTCTAGTGGCCCTGCCACAAGTATCTGTATCTGGTGACTCTGTCACAATATCTGT
55512611 TT
1 TT
55512613 TGGCAGCCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
55 11 0.21
56 42 0.79
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (55 bp):
TTCTAGTGGCCCTGCCACAAGTATCTGTATCTGGTGACTCTGTCACAATATCTGT
Found at i:55515202 original size:94 final size:94
Alignment explanation
Indices: 55515038--55515278 Score: 392
Period size: 94 Copynumber: 2.6 Consensus size: 94
55515028 CATTTTAGGC
* * *
55515038 AGTGCCAATGTTAAATCATTATAATAAGGCAATTTGCCTAATTCAAATAGCATATAAAACCTGCA
1 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
*
55515103 CACAAAGTGACATTTAATTTCACACACAT
66 CACAAAGTGACATTTAATTCCACACACAT
**
55515132 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAATTTGCA
1 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
* *
55515197 TACAAAGTGACATTTAATTCCGCACACAT
66 CACAAAGTGACATTTAATTCCACACACAT
* *
55515226 AGTGCCAATGTTAACTCATTATAATATGGCAACTTACTTAATTCAAATAGCAT
1 AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCAT
55515279 CTACGGTCAC
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 137 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (94 bp):
AGTGCCAATGTTAACTCATTATAATAAGGCAATTTACTTAATTCAAATAGCATATAAAACCTGCA
CACAAAGTGACATTTAATTCCACACACAT
Found at i:55522953 original size:94 final size:94
Alignment explanation
Indices: 55522836--55523117 Score: 501
Period size: 94 Copynumber: 3.0 Consensus size: 94
55522826 ATAGACATTC
* * *
55522836 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAGTGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
55522901 GGCAATTTACTTAATTCAAATATCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
55522930 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
55522995 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
55523024 AAATCTGCACACAAAGTGACATTTAATTCCGCACACAGAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
55523089 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
55523118 CGGACACCTT
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 181 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:55534408 original size:50 final size:50
Alignment explanation
Indices: 55534289--55534582 Score: 268
Period size: 50 Copynumber: 5.8 Consensus size: 50
55534279 AACCGAAGCT
* * * *
55534289 ATCTGGTACACATAGTAGCTTGCGCTTAGTACTACACATGCGA-CTAACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * *
55534338 ATCTGGTATACGTAGTAGCCTGCACTTAGTACTACACATGTAACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * * **
55534388 ATCTGATACACGTAGCAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CC
* * * * ** *
55534439 GTCGGGTACGCATAGTAGCCTGCAGTTAGTACTACACATACGACCTAACT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * *
55534489 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAAAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACC
*** * * *
55534541 ATCTTAAACATATAGTAGCCTGCACATAATACTACACATGTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
55534583 TTCTCACAAT
Statistics
Matches: 194, Mismatches: 45, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
49 38 0.20
50 83 0.43
51 35 0.18
52 38 0.20
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:55534475 original size:101 final size:101
Alignment explanation
Indices: 55534350--55534531 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
55534340 CTGGTATACG
**
55534350 TAGTAGCCTGCACTTAGTACTACACATGTAACCTAACCATCTGATACACGTAGCAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACAACCTAACCATCTGATACACGTAGCAGCCTGCACTT
55534415 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * * * *
55534451 TAGTAGCCTGCAGTTAGTACTACACATACGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACAACCTAACCATCTGATACACGTAGCAGCCTGCACTT
55534516 AGTACTACACACGTGA
66 AGTACTACACACGTGA
55534532 CTTAAAACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATACAACCTAACCATCTGATACACGTAGCAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:55536068 original size:34 final size:34
Alignment explanation
Indices: 55535996--55536068 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
55535986 TTGTACTGTT
* * * * *
55535996 ACTGTTACTGTAATGGGCTAAGTCCCACACTAAT
1 ACTGATACTATAATGGGCTAAGTCCCAAACGAAA
55536030 ACTGATACTATAATGGGCTAAGGT-CCAAACGAAA
1 ACTGATACTATAATGGGCTAA-GTCCCAAACGAAA
55536064 ACTGA
1 ACTGA
55536069 ACTGTTACTG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 31 0.94
35 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (34 bp):
ACTGATACTATAATGGGCTAAGTCCCAAACGAAA
Done.