Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 175 of 290
Found at i:56948948 original size:42 final size:42
Alignment explanation
Indices: 56948799--56948967 Score: 164
Period size: 42 Copynumber: 4.0 Consensus size: 42
56948789 ATCACATAAG
* * * *
56948799 CTCATACAATGCC-ATATCCCAGATATGGTCTTACATGTTAT
1 CTCATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
* * * * *
56948840 CACATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAAT
1 CTCATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
* * * *
56948883 -TAATTAACGATGCCAATGT-CCAGAAATGGTCTTATACGTAAT
1 CTCA-T-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
*
56948925 CTCATACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 CTCATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
56948967 C
1 C
56948968 GCATCTCGAT
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
41 17 0.17
42 48 0.48
43 35 0.35
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
CTCATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAT
Found at i:56951140 original size:43 final size:43
Alignment explanation
Indices: 56951079--56951227 Score: 119
Period size: 43 Copynumber: 3.5 Consensus size: 43
56951069 AATGTCGACA
* * *
56951079 TCCCAGAC-GTGGTATTACATGTAATTCAATATCGATGCTTCTG
1 TCCCAGACAG-GGTCTTACACGTAATTCAATATCGATGCTTATG
* *
56951122 TCCCAGACAGGGTCTTACACG-AAATCAGATA-CGATGCTGATG
1 TCCCAGACAGGGTCTTACACGTAATTCA-ATATCGATGCTTATG
* * * * * *
56951164 TCCTAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTG
1 TCCCAGACAGGGTCTTACACGT-AAT-TCAATATCGATGCTTATG
*
56951207 TCCCAGACACGGTCTTACACG
1 TCCCAGACAGGGTCTTACACG
56951228 ATGTCACAGA
Statistics
Matches: 84, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
42 33 0.39
43 46 0.55
44 3 0.04
45 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACACGTAATTCAATATCGATGCTTATG
Found at i:56951172 original size:42 final size:40
Alignment explanation
Indices: 56951109--56951228 Score: 116
Period size: 42 Copynumber: 2.9 Consensus size: 40
56951099 GTAATTCAAT
* *
56951109 ATCGATGCTTCTGTCCCAGACAGGGTCTTACACGAAA-TCA
1 ATCGATGC-TGTGTCCCAGACACGGTCTTACACGAAACTCA
* * *
56951149 GATACGATGCTGATGTCCTAGACATGGTCTTATACGTAAATCTCA
1 -AT-CGATGCTG-TGTCCCAGACACGGTCTTACACG-AAA-CTCA
*
56951194 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 ATCGATG-CTGTGTCCCAGACACGGTCTTACACGA
56951229 TGTCACAGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
41 3 0.05
42 27 0.42
43 27 0.42
44 5 0.08
45 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
ATCGATGCTGTGTCCCAGACACGGTCTTACACGAAACTCA
Found at i:56954257 original size:6 final size:6
Alignment explanation
Indices: 56954239--56954350 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
56954229 AAGAAACATT
* *
56954239 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
56954288 ATCAGT ATCAGGTA A--AGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
56954337 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
56954351 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 24
0.69 0.10 0.20
Matches are distributed among these distances:
4 2 0.02
5 5 0.06
6 65 0.79
7 7 0.09
8 3 0.04
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:56954284 original size:25 final size:24
Alignment explanation
Indices: 56954253--56954347 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
56954243 GAACTAGAAT
*
56954253 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGT-A
*
56954278 CAGAATCAGAATCAGTATCAGGTA
1 CAGAATCAGAATCAGAATCAGGTA
* *
56954302 AAGAATCAAAATCAGAATCA-GTA
1 CAGAATCAGAATCAGAATCAGGTA
*
56954325 TCAGGTAA-CAGAATCAAAATCAG
1 -CA-G-AATCAGAATCAGAATCAG
56954348 AATGTGAATG
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
23 3 0.05
24 19 0.33
25 34 0.59
26 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (24 bp):
CAGAATCAGAATCAGAATCAGGTA
Found at i:56954317 original size:30 final size:31
Alignment explanation
Indices: 56954281--56954350 Score: 133
Period size: 30 Copynumber: 2.3 Consensus size: 31
56954271 TAGGTGACAG
56954281 AATCAGAATCAGTATCAGGTAA-AGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
56954311 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
56954342 AATCAGAAT
1 AATCAGAAT
56954351 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
30 22 0.56
31 17 0.44
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:56954781 original size:27 final size:27
Alignment explanation
Indices: 56954751--56955027 Score: 383
Period size: 27 Copynumber: 10.3 Consensus size: 27
56954741 GGGGCAAAAT
* * * *
56954751 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
56954778 GGTAATTCTACCCTATAGGGGTACTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
56954805 AGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
56954832 GGTCATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
56954859 GGTTATTCTAACCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56954886 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56954913 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
56954940 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56954967 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56954994 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56955021 AGTAATT
1 GGTAATT
56955028 TCACAAAGTA
Statistics
Matches: 227, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 227 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:56955070 original size:27 final size:26
Alignment explanation
Indices: 56955040--56955137 Score: 97
Period size: 27 Copynumber: 3.7 Consensus size: 26
56955030 ACAAAGTAGG
*
56955040 GGTATTTTGGTAATTTTACAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
* * * *
56955066 TGGTATTTTGGTAATTTTATTGATCGAG
1 -GGTATTTTGGTAATTTTA-TAAACCAA
*
56955094 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTATAAACCAA
**
56955120 GTGTATTTCAGTAATTTT
1 G-GTATTTTGGTAATTTT
56955138 TTACAGTGAG
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 5 0.09
27 49 0.86
28 3 0.05
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTATAAACCAA
Found at i:56955071 original size:54 final size:53
Alignment explanation
Indices: 56955013--56955136 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 53
56955003 ACCCTACAAG
56955013 GGTATTTCAGTAATTTCACAAAGTAG-GGGTATTTTGGTAATTTTACAAACCAA
1 GGTATTTCAGTAATTTCACAAA-TAGAGGGTATTTTGGTAATTTTACAAACCAA
** * *** * **
56955066 TGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGTATTTCAGTAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
56955120 GTGTATTTCAGTAATTT
1 G-GTATTTCAGTAATTT
56955137 TTTACAGTGA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 3 0.05
54 54 0.95
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (53 bp):
GGTATTTCAGTAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
Found at i:56955071 original size:81 final size:81
Alignment explanation
Indices: 56954751--56955081 Score: 265
Period size: 81 Copynumber: 4.1 Consensus size: 81
56954741 GGGGCAAAAT
* * * * ** * * * *
56954751 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTACTTCAGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAAGGGTATTTCGGTAATTCTAC
** * *
56954816 CCTATAGGGGTATTTC
66 CAAACAAGGGTATTTC
* * * * * * * *
56954832 GGTCATTCTACCCTATAGGGGTATTTCGGTTATTCTAACC-TACAGGGGTATTTCGGTAATTCTA
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCT-ACCAAATAAGGGTATTTCGGTAATTCTA
** *
56954896 CCCTACAGGGGTATTTC
65 CCAAACAAGGGTATTTC
* * * **
56954913 GGTTATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAAGGGTATTTCGGTAATTCTAC
**
56954978 CCTACAAGGGTATTTC
66 CAAACAAGGGTATTTC
* * *
56954994 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT-T-CACAAAGTAGGGGTATTTTGGTAATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC-CAAA-TAAGGGTATTTCGGTAATTCT
* *
56955057 A-CAAACCAATGGTATTTT
64 ACCAAA-CAAGGGTATTTC
56955075 GGTAATT
1 GGTAATT
56955082 TTATTGATCG
Statistics
Matches: 215, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.00
80 8 0.04
81 203 0.94
82 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCAAATAAGGGTATTTCGGTAATTCTAC
CAAACAAGGGTATTTC
Found at i:56955160 original size:27 final size:27
Alignment explanation
Indices: 56955145--56955328 Score: 269
Period size: 27 Copynumber: 6.8 Consensus size: 27
56955135 TTTTTACAGT
*
56955145 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* * *
56955172 GAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
56955199 GAGGGTAAAATAGTAATTCTATAAATT
1 GAGGGTAAAATGGTAATTCTATAAATC
56955226 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
56955253 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* * * *
56955280 AAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
56955307 GAGGGTAAAATGGTAATTCTAT
1 GAGGGTAAAATGGTAATTCTAT
56955329 CTTACAAGAG
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:56955173 original size:81 final size:81
Alignment explanation
Indices: 56955102--56955328 Score: 244
Period size: 81 Copynumber: 2.8 Consensus size: 81
56955092 AGGGTATTTT
* * ** * * * *
56955102 GGTAATTTTGTAAACCAAGTGT-ATTTCAGTAATTTTTTACAGTGAGGGTAAAATGGTAATTCTG
1 GGTAATTCTGTAAACCAAGGGTAAAAT-AGTAATTCTATAAAGTGAGGGTAAAATGGTAATTCTA
56955166 TAAATCGAGGGTAAGAC
65 TAAATCGAGGGTAAGAC
* * *
56955183 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTAT
1 GGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAAGTGAGGGTAAAATGGTAATTCTAT
* *
56955248 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAGAC
* * * * *
56955264 AGTAATTCTATAAATCAAGGGTAAAA-CGATAATTCTGTAAA-TCGAGGGTAAAATGGTAATTCT
1 GGTAATTCTGTAAACCAAGGGTAAAATAG-TAATTCTATAAAGT-GAGGGTAAAATGGTAATTCT
56955327 AT
64 AT
56955329 CTTACAAGAG
Statistics
Matches: 125, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 121 0.97
82 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
GGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAAGTGAGGGTAAAATGGTAATTCTAT
AAATCGAGGGTAAGAC
Found at i:56955368 original size:27 final size:27
Alignment explanation
Indices: 56955338--56955488 Score: 130
Period size: 27 Copynumber: 5.6 Consensus size: 27
56955328 TCTTACAAGA
56955338 GTATTTCAGTAATTTGACAAATCGAGG
1 GTATTTCAGTAATTTGACAAATCGAGG
56955365 GTATTTCAGTAATTTTG-CAAA-CTGAGG
1 GTATTTCAGTAA-TTTGACAAATC-GAGG
** *
56955392 GTATTTTTGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTGACAAATCGAGG
* ** * * *
56955419 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTGACAAATCGAGG
* * *
56955446 GTACTTT--GCTAATTTTACAAGTTGAGG
1 GTA-TTTCAG-TAATTTGACAAATCGAGG
56955473 GTATTTCAGTAATTTG
1 GTATTTCAGTAATTTG
56955489 GTAAACTAAA
Statistics
Matches: 102, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
26 8 0.08
27 85 0.83
28 9 0.09
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTGACAAATCGAGG
Found at i:56955396 original size:54 final size:52
Alignment explanation
Indices: 56955346--56955487 Score: 151
Period size: 54 Copynumber: 2.7 Consensus size: 52
56955336 GAGTATTTCA
* *
56955346 GTAATTTGACAAATCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTTT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATC-GAGGGTA--TTT
* ** * *
56955400 GTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTT
* *
56955453 GCTAATTTTACAAGTTGAGGGTATTTCAGTAATTT
1 G-TAATTTTACAAATCGAGGGTATTTCAGTAATTT
56955488 GGTAAACTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
53 4 0.05
54 68 0.93
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (52 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTT
Found at i:56955424 original size:81 final size:81
Alignment explanation
Indices: 56955339--56955487 Score: 176
Period size: 81 Copynumber: 1.8 Consensus size: 81
56955329 CTTACAAGAG
* **
56955339 TATTTCAGTAATTTGACAAATCGAGGGTA-TTT-CAGTAATTTTGCAAACTGAGGGTATTTTTGT
1 TATTTCAGTAATTTGACAAATCGAGGGTACTTTGC--TAATTTTACAAACTGAGGGTATTTCAGT
56955402 AATTTTACAAATCGAGGA
64 AATTTTACAAATCGAGGA
** * * * **
56955420 TATTTGGGTAATTTTATAAATCGGGGGTACTTTGCTAATTTTACAAGTTGAGGGTATTTCAGTAA
1 TATTTCAGTAATTTGACAAATCGAGGGTACTTTGCTAATTTTACAAACTGAGGGTATTTCAGTAA
56955485 TTT
66 TTT
56955488 GGTAAACTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
81 52 0.93
82 3 0.05
83 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
TATTTCAGTAATTTGACAAATCGAGGGTACTTTGCTAATTTTACAAACTGAGGGTATTTCAGTAA
TTTTACAAATCGAGGA
Found at i:56957483 original size:6 final size:6
Alignment explanation
Indices: 56957465--56957577 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
56957455 AAGAAACATT
* * *
56957465 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * *
56957514 ATCAGT ATCAAGTA A-CATA ATCAAA ATCAGA ATCGGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
56957564 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
56957578 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 17, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 62 0.78
7 8 0.10
8 3 0.04
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:56957513 original size:25 final size:25
Alignment explanation
Indices: 56957482--56957547 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
56957472 CTAGAATCAG
* * *
56957482 AATCAGAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAAGTAACAA
* *
56957507 AATCAGAATCAGTATCAAGTAACAT
1 AATCAGAATCAGAATCAAGTAACAA
*
56957532 AATCAAAATCAGAATC
1 AATCAGAATCAGAATC
56957548 GGTATCAGGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.50, C:0.15, G:0.14, T:0.21
Consensus pattern (25 bp):
AATCAGAATCAGAATCAAGTAACAA
Found at i:56957539 original size:31 final size:31
Alignment explanation
Indices: 56957504--56957577 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
56957494 AATTAGGTGA
*
56957504 CAAAATCAGAATCAGTATCAAGTAACATAAT
1 CAAAATCAGAATCAGTATCAAGTAACAGAAT
* *
56957535 CAAAATCAGAATCGGTATCAGGTAACAGAAT
1 CAAAATCAGAATCAGTATCAAGTAACAGAAT
56957566 CAAAATCAGAAT
1 CAAAATCAGAAT
56957578 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.20
Consensus pattern (31 bp):
CAAAATCAGAATCAGTATCAAGTAACAGAAT
Found at i:56958009 original size:27 final size:27
Alignment explanation
Indices: 56957979--56958282 Score: 464
Period size: 27 Copynumber: 11.3 Consensus size: 27
56957969 GGGGCAAAAT
* * * *
56957979 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56958006 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
56958033 ATTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
56958060 GGTCATTCTACCCTAGAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56958087 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56958114 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56958141 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56958168 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56958195 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56958222 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56958249 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56958276 GGTAATT
1 GGTAATT
56958283 TCACAAAGTA
Statistics
Matches: 253, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 253 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:56958325 original size:27 final size:27
Alignment explanation
Indices: 56958237--56958382 Score: 114
Period size: 27 Copynumber: 5.4 Consensus size: 27
56958227 TTCTACCCTA
* * **
56958237 CAAGGGTATTTCGGTAATTCTACCCTA-
1 CAAGGGTATTTTGGTAATTTTA-CAAAC
* * *
56958264 CAAGGGTATTTCGGTAATTTCACAAAG
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
56958291 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** *
56958318 CAATGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
56958345 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
56958372 CAAGTGTATTT
1 CAAGGGTATTT
56958383 CAATAATTTT
Statistics
Matches: 94, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
26 2 0.02
27 92 0.98
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:56958430 original size:27 final size:27
Alignment explanation
Indices: 56958400--56958581 Score: 265
Period size: 27 Copynumber: 6.7 Consensus size: 27
56958390 TTTTTACAGT
*
56958400 GAGGGTAAAATGGGAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
56958427 GAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
56958454 GAGGGTAAAATAGTAATTTTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
56958481 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
56958508 GTGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
56958535 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
56958562 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
56958582 ATCTTACAGG
Statistics
Matches: 134, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:56958442 original size:81 final size:81
Alignment explanation
Indices: 56958357--56958581 Score: 220
Period size: 81 Copynumber: 2.8 Consensus size: 81
56958347 AGGGTATTTT
* * ** * *
56958357 GGTAATTTTGTAAACCAAGTGT-ATTTCAATAATTTTTTACAGT-GAGGGTAAAATGGGAATTCT
1 GGTAATTCTGTAAACCAAGGGTAAAAT-AATAATTTTATA-AATCGAGGGTAAAATGGGAATTCT
56958420 GTAAATCGAGGGTAAGAC
64 GTAAATCGAGGGTAAGAC
* * * *
56958438 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGT
1 GGTAATTCTGTAAACCAAGGGTAAAATAATAATTTTATAAATCGAGGGTAAAATGGGAATTCTGT
* * *
56958503 AAATCGTGGGTAAAAT
66 AAATCGAGGGTAAGAC
* * * * ** * * *
56958519 AGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
1 GGTAATTCTGTAAACCAAGGGTAAAATAATAATTTTATAAATCGAGGGTAAAATGGGAATTCT
56958582 ATCTTACAGG
Statistics
Matches: 122, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
80 2 0.02
81 118 0.97
82 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (81 bp):
GGTAATTCTGTAAACCAAGGGTAAAATAATAATTTTATAAATCGAGGGTAAAATGGGAATTCTGT
AAATCGAGGGTAAGAC
Found at i:56958623 original size:27 final size:27
Alignment explanation
Indices: 56958593--56958743 Score: 130
Period size: 27 Copynumber: 5.6 Consensus size: 27
56958583 TCTTACAGGA
56958593 GTATTTCAGTAATTTGACAAATCGAGG
1 GTATTTCAGTAATTTGACAAATCGAGG
56958620 GTATTTCAGTAATTTTG-CAAA-CTGAGG
1 GTATTTCAGTAA-TTTGACAAATC-GAGG
** *
56958647 GTATTTTTGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTGACAAATCGAGG
* ** * * *
56958674 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTGACAAATCGAGG
* * *
56958701 GTACTTT--GCTAATTTTACAAGTTGAGG
1 GTA-TTTCAG-TAATTTGACAAATCGAGG
56958728 GTATTTCAGTAATTTG
1 GTATTTCAGTAATTTG
56958744 GTAAACTAAA
Statistics
Matches: 102, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
26 8 0.08
27 85 0.83
28 9 0.09
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTGACAAATCGAGG
Found at i:56958651 original size:54 final size:52
Alignment explanation
Indices: 56958601--56958742 Score: 151
Period size: 54 Copynumber: 2.7 Consensus size: 52
56958591 GAGTATTTCA
* *
56958601 GTAATTTGACAAATCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTTT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATC-GAGGGTA--TTT
* ** * *
56958655 GTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTT
1 GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTT
* *
56958708 GCTAATTTTACAAGTTGAGGGTATTTCAGTAATTT
1 G-TAATTTTACAAATCGAGGGTATTTCAGTAATTT
56958743 GGTAAACTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
53 4 0.05
54 68 0.93
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (52 bp):
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTT
Found at i:56958679 original size:81 final size:82
Alignment explanation
Indices: 56958589--56958742 Score: 179
Period size: 81 Copynumber: 1.9 Consensus size: 82
56958579 TCTATCTTAC
*
56958589 AGGAGTATTTCAGTAATTTGACAAATCGAGGGTA-TTT-CAGTAATTTTGCAAACTGAGGGTATT
1 AGGAGTATTTCAGTAATTTGACAAATCGAGGGTACTTTGC--TAATTTTACAAACTGAGGGTATT
**
56958652 TTTGTAATTTTACAAATCG
64 TCAGTAATTTTACAAATCG
** * * * **
56958671 AGGA-TATTTGGGTAATTTTATAAATCGGGGGTACTTTGCTAATTTTACAAGTTGAGGGTATTTC
1 AGGAGTATTTCAGTAATTTGACAAATCGAGGGTACTTTGCTAATTTTACAAACTGAGGGTATTTC
56958735 AGTAATTT
66 AGTAATTT
56958743 GGTAAACTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
81 52 0.87
82 7 0.12
83 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (82 bp):
AGGAGTATTTCAGTAATTTGACAAATCGAGGGTACTTTGCTAATTTTACAAACTGAGGGTATTTC
AGTAATTTTACAAATCG
Found at i:56960776 original size:21 final size:21
Alignment explanation
Indices: 56960743--56960784 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
56960733 CAAAATCAGA
* *
56960743 ATCAGAATTAGGTGACAGAAT
1 ATCAGAATCAGGTAACAGAAT
*
56960764 ATCAGTATCAGGTAACAGAAT
1 ATCAGAATCAGGTAACAGAAT
56960785 CAAAATCAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (21 bp):
ATCAGAATCAGGTAACAGAAT
Found at i:56960806 original size:31 final size:31
Alignment explanation
Indices: 56960768--56960827 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
56960758 CAGAATATCA
56960768 GTATCAGGTAACAGAATCAAAATCAGAATCG
1 GTATCAGGTAACAGAATCAAAATCAGAATCG
*
56960799 GTATCAGGTAACAGAATCAAAATTAGAAT
1 GTATCAGGTAACAGAATCAAAATCAGAAT
56960828 GTGAATGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (31 bp):
GTATCAGGTAACAGAATCAAAATCAGAATCG
Found at i:56961259 original size:27 final size:27
Alignment explanation
Indices: 56961229--56961532 Score: 482
Period size: 27 Copynumber: 11.3 Consensus size: 27
56961219 GGGGCAAAAT
* * * *
56961229 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56961256 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
56961283 GGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
56961310 GGTCATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56961337 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56961364 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56961391 GGTAATTCTACACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56961418 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56961445 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56961472 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
56961499 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
56961526 GGTAATT
1 GGTAATT
56961533 TCACAAAGTA
Statistics
Matches: 256, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 256 1.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:56961575 original size:27 final size:27
Alignment explanation
Indices: 56961487--56961642 Score: 116
Period size: 27 Copynumber: 5.8 Consensus size: 27
56961477 TTCTACCCTA
* * **
56961487 CAAGGGTATTTCGGTAATTCTACCCTA-
1 CAAGGGTATTTTGGTAATTTTA-CAAAC
* * *
56961514 CAAGGGTATTTCGGTAATTTCACAAAG
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
56961541 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** *
56961568 CAATGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
56961595 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
56961622 CAAGTGTATTTCAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
56961643 TTACAGTGAG
Statistics
Matches: 102, Mismatches: 26, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
26 2 0.02
27 100 0.98
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:56961576 original size:54 final size:53
Alignment explanation
Indices: 56961518--56961641 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 53
56961508 ACCCTACAAG
56961518 GGTATTTCGGTAATTTCACAAAGTAG-GGGTATTTTGGTAATTTTACAAACCAA
1 GGTATTTCGGTAATTTCACAAA-TAGAGGGTATTTTGGTAATTTTACAAACCAA
* * *** * **
56961571 TGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGTATTTCGGTAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
*
56961625 GTGTATTTCAGTAATTT
1 G-GTATTTCGGTAATTT
56961642 TTTACAGTGA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
53 3 0.05
54 55 0.95
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (53 bp):
GGTATTTCGGTAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACCAA
Found at i:56961576 original size:81 final size:80
Alignment explanation
Indices: 56961243--56961586 Score: 451
Period size: 81 Copynumber: 4.2 Consensus size: 80
56961233 ATTTTACCCC
* *
56961243 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTATAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATT
* *
56961308 TCGGTCATTCTACCCT
66 TCGGTAATTCTA-CAT
* *
56961324 AC-AGGGATATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTTATTCTACCCTACAGGGGTAT
1 ACAAGGG-TATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTAT
56961388 TTCGGTAATTCTACACT
65 TTCGGTAATTCTACA-T
* *
56961405 ACAGGGGTATTTCGGTTATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATT
*
56961470 TCGGTAATTCTACCCT
66 TCGGTAATTCTA-CAT
* **
56961486 ACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATT-T-CACAAAGTAGGGGTA
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-CCTA-TAGGGGTA
* * *
56961549 TTTTGGTAATTTTACAA
64 TTTCGGTAATTCTACAT
* *
56961566 ACCAATGGTATTTTGGTAATT
1 A-CAAGGGTATTTCGGTAATT
56961587 TTATTGATCG
Statistics
Matches: 234, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
79 1 0.00
80 10 0.04
81 219 0.94
82 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (80 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATT
TCGGTAATTCTACAT
Found at i:56961684 original size:27 final size:27
Alignment explanation
Indices: 56961650--56961833 Score: 278
Period size: 27 Copynumber: 6.8 Consensus size: 27
56961640 TTTTTACAGT
56961650 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* * * *
56961677 GAGAGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
56961704 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
56961731 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
56961758 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
56961785 GAGGGTAAAACGATAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
56961812 GAGGGTAAAATGGTAATTCTAT
1 GAGGGTAAAATGGTAATTCTAT
56961834 CTTACAGGAG
Statistics
Matches: 137, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:56961693 original size:54 final size:54
Alignment explanation
Indices: 56961650--56961833 Score: 314
Period size: 54 Copynumber: 3.4 Consensus size: 54
56961640 TTTTTACAGT
* * *
56961650 GAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
56961704 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
* *
56961758 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATC
1 GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
*
56961812 GAGGGTAAAATGGTAATTCTAT
1 GAGGGTAAAATAGTAATTCTAT
56961834 CTTACAGGAG
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 124 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC
Found at i:56961873 original size:27 final size:27
Alignment explanation
Indices: 56961843--56961993 Score: 116
Period size: 27 Copynumber: 5.6 Consensus size: 27
56961833 TCTTACAGGA
56961843 GTATTTCAGTAATTTGACAAATCGAGG
1 GTATTTCAGTAATTTGACAAATCGAGG
56961870 GTATTTCAGTAATTTTG-CAAA-CTGAGG
1 GTATTTCAGTAA-TTTGACAAATC-GAGG
**
56961897 GTATTTTTGTAATTTTG-CAAATCGAGG
1 GTATTTCAGTAA-TTTGACAAATCGAGG
* ** * *
56961924 ATATTTGGGTAATTTTATAAATCCG-GG
1 GTATTTCAGTAATTTGACAAAT-CGAGG
* * *
56961951 GTACTTT--GCTAATTTTACAAGTTGAGG
1 GTA-TTTCAG-TAATTTGACAAATCGAGG
56961978 GTATTTCAGTAATTTG
1 GTATTTCAGTAATTTG
56961994 GTAAACTAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
26 9 0.09
27 82 0.80
28 11 0.11
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTGACAAATCGAGG
Found at i:56961901 original size:54 final size:52
Alignment explanation
Indices: 56961851--56961992 Score: 135
Period size: 54 Copynumber: 2.7 Consensus size: 52
56961841 GAGTATTTCA
* *
56961851 GTAATTTGACAAATCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTTT
1 GTAATTTGACAAATCGAGGGTATTTCAGTAATTTTACAAATCCG-GGGTA--TTT
* ** *
56961905 GTAATTTTG-CAAATCGAGGATATTTGGGTAATTTTATAAATCCGGGGTACTTT
1 GTAA-TTTGACAAATCGAGGGTATTTCAGTAATTTTACAAATCCGGGGTA-TTT
* * *
56961958 GCTAATTTTACAAGTTGAGGGTATTTCAGTAATTT
1 G-TAATTTGACAAATCGAGGGTATTTCAGTAATTT
56961993 GGTAAACTAA
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
53 7 0.10
54 58 0.82
55 6 0.08
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (52 bp):
GTAATTTGACAAATCGAGGGTATTTCAGTAATTTTACAAATCCGGGGTATTT
Found at i:56963578 original size:27 final size:27
Alignment explanation
Indices: 56963482--56963579 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
56963472 TTAGTTTACC
* * *
56963482 AAATTACTGAAATAACCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTATA
*
56963509 AAATTAC-CAAAGTACCC-CTGATTTATA
1 AAATTACTGAAA-TACCCTC-GATTTATA
* * ***
56963536 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTATA
56963563 AAATTACTGAAATACCC
1 AAATTACTGAAATACCC
56963580 CTGTAGGGTA
Statistics
Matches: 53, Mismatches: 14, Indels: 8
0.71 0.19 0.11
Matches are distributed among these distances:
26 4 0.08
27 48 0.91
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTATA
Found at i:56963594 original size:27 final size:27
Alignment explanation
Indices: 56963564--56963678 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
56963554 CGATTTATAA
*
56963564 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
56963591 AATTA-CGAAAATACCCTTGTAGGGTAG
1 AATTACCG-AAATACCCCTGTAGGGTAG
*
56963618 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
56963645 AATTACCGAGATA-CCCTCGTAGGGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
56963672 AATTACC
1 AATTACC
56963679 ATTTTTCCCC
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
26 5 0.06
27 71 0.91
28 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:56963841 original size:16 final size:16
Alignment explanation
Indices: 56963820--56963850 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56963810 CAAATATGGG
*
56963820 CATGACATTTTGCATA
1 CATGACATGTTGCATA
56963836 CATGACATGTTGCAT
1 CATGACATGTTGCAT
56963851 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:56969815 original size:23 final size:23
Alignment explanation
Indices: 56969777--56969851 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
56969767 CTGATGAACA
* *
56969777 GTAAGCTCTATTGAGCTGAAATC
1 GTAAGCTATATCGAGCTGAAATC
*
56969800 GTAAGCTATATCGAGCTG-AATA
1 GTAAGCTATATCGAGCTGAAATC
*
56969822 GCAAGCTCATA-CGAGCTGAAA-C
1 GTAAGCT-ATATCGAGCTGAAATC
56969844 GGTAAGCT
1 -GTAAGCT
56969852 CCAATGAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
22 16 0.37
23 27 0.63
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (23 bp):
GTAAGCTATATCGAGCTGAAATC
Found at i:56978769 original size:40 final size:40
Alignment explanation
Indices: 56978714--56978919 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
56978704 GGACGAAGAT
*
56978714 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
56978754 CCGAAGGCATTTGTGCTAGTGATTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
56978794 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
56978834 CAGAAGGCATTTGTGCTAGTGACTATGTCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
** * * *
56978874 CCGAAGGCATTCATGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
56978913 CCGAAGG
1 CCGAAGG
56978920 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.09
40 135 0.89
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:56986728 original size:41 final size:38
Alignment explanation
Indices: 56986606--56986736 Score: 146
Period size: 41 Copynumber: 3.4 Consensus size: 38
56986596 GACTAAGATT
56986606 CGAAGGCATTTGTGCTAGTGATTATTATCCGGGCTAAGT-C
1 CGAAGGCATTTGTGCTAGTGA-TATTA--CGGGCTAAGTCC
*
56986646 CGAA-GCA-TTGTGCTAGTGATA-TACTAGGCT-AGTCC
1 CGAAGGCATTTGTGCTAGTGATATTAC-GGGCTAAGTCC
56986681 CGAAGGCATTTGTGCTAGTGAGCTATGTACGGGCTAAGTCC
1 CGAAGGCATTTGTGCTAGTGA--TAT-TACGGGCTAAGTCC
*
56986722 CGAAGGCATTCGTGC
1 CGAAGGCATTTGTGC
56986737 GAGTTGCTAT
Statistics
Matches: 79, Mismatches: 3, Indels: 17
0.80 0.03 0.17
Matches are distributed among these distances:
34 4 0.05
35 9 0.11
36 5 0.06
37 14 0.18
38 12 0.15
39 5 0.06
40 8 0.10
41 22 0.28
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (38 bp):
CGAAGGCATTTGTGCTAGTGATATTACGGGCTAAGTCC
Found at i:56995896 original size:47 final size:47
Alignment explanation
Indices: 56995842--56995946 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 47
56995832 TAGTATTAAT
* *
56995842 TATGTGATAAGGCTGAATGGCCAATGTGATGGATGAGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAAAGTGTATA
*
56995889 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAAAGTGTATA
*
56995936 AATGTGATAAG
1 TATGTGATAAG
56995947 TCCCGAAGGG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGAGAAAGTGTATA
Found at i:57002317 original size:27 final size:27
Alignment explanation
Indices: 57002287--57002599 Score: 405
Period size: 27 Copynumber: 11.6 Consensus size: 27
57002277 TTAGTTTACC
57002287 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
57002314 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
57002341 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
57002368 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
57002395 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
57002422 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
57002449 AAATTACCAAAATACCC-TAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
57002475 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
57002502 AAATTACCAAAATA-CCTCTGATTTGTG
1 AAATTACCAAAATACCCT-TGGTTTGTA
** ** *
57002529 AAATTACTGAAATACCCTTGACTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * **
57002556 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
57002583 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
57002600 CCGATTTATA
Statistics
Matches: 256, Mismatches: 27, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 26 0.10
27 227 0.89
28 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:57002609 original size:54 final size:54
Alignment explanation
Indices: 57002287--57002644 Score: 353
Period size: 54 Copynumber: 6.6 Consensus size: 54
57002277 TTAGTTTACC
* * ** * *
57002287 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATA
* * * * * *
57002341 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATA
* * * * *
57002395 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATA
* *
57002449 AAATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGA-TTTATA
* ** * *
57002502 AAATTACCAAAATA-CCTCTGATTTGTGAAATTACTGAAATACCCTTGACTTATA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCCTGATTTATA
** * * *
57002556 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATA
* * *** **
57002610 GAGTTACCATTTTACCCTCGATTTACAAAATTACC
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACC
57002645 GAAGCACTAT
Statistics
Matches: 258, Mismatches: 41, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
52 3 0.01
53 43 0.17
54 207 0.80
55 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTATA
Found at i:57002643 original size:27 final size:27
Alignment explanation
Indices: 57002287--57002644 Score: 215
Period size: 27 Copynumber: 13.3 Consensus size: 27
57002277 TTAGTTTACC
* * * *
57002287 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAGTACCCTCGATTTATA
* * * * *
57002314 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAGTACCCTCGATTTATA
* * * *
57002341 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAGTACCCTCGATTTATA
* * *
57002368 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAGTACCCTC-GATTTATA
* * * *
57002395 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAGTACCCTCGATTTATA
* * * *
57002422 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAGTACCCTCGATTTATA
* * *
57002449 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAGTACCCTCGATTTATA
* * *
57002475 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAGTACCCTCGA-TTTATA
* * *
57002502 AAATTACCAAAATA-CCTCTGATTTGTG
1 AAATTACCAAAGTACCCTC-GATTTATA
* * *
57002529 AAATTACTGAAA-TACCCTTGACTTATA
1 AAATTAC-CAAAGTACCCTCGATTTATA
* * *
57002556 AAATTACTGAAA-TACCCTCGACTTGTA
1 AAATTAC-CAAAGTACCCTCGATTTATA
*
57002583 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAGTACCCTCGATTTATA
* * *** *
57002610 GAGTTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAGTACCCTCGATTTATA
57002637 AAATTACC
1 AAATTACC
57002645 GAAGCACTAT
Statistics
Matches: 285, Mismatches: 37, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
26 27 0.09
27 251 0.88
28 7 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAGTACCCTCGATTTATA
Found at i:57002703 original size:28 final size:27
Alignment explanation
Indices: 57002655--57002778 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
57002645 GAAGCACTAT
57002655 TGTAGGGTAGAATTATCGAAATACCCC
1 TGTAGGGTAGAATTATCGAAATACCCC
* *
57002682 TGTAGGATAGAAATTATCGAAATACCCT
1 TGTAGGGTAG-AATTATCGAAATACCCC
* *
57002710 TGTAGGGTAGAAATACCGAAATACCCC
1 TGTAGGGTAGAATTATCGAAATACCCC
* * **
57002737 TGTAGGGTAGAATTATCGAGATAACTT
1 TGTAGGGTAGAATTATCGAAATACCCC
*
57002764 TGTAGGGTAAAATTA
1 TGTAGGGTAGAATTA
57002779 CCATTTTGCC
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 58 0.70
28 25 0.30
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (27 bp):
TGTAGGGTAGAATTATCGAAATACCCC
Found at i:57002714 original size:55 final size:54
Alignment explanation
Indices: 57002654--57002780 Score: 182
Period size: 55 Copynumber: 2.3 Consensus size: 54
57002644 CGAAGCACTA
* *
57002654 TTGTAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAAATTATCGAAATACCC
1 TTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAG-AATTATCGAAATAACC
* * * *
57002709 TTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTATCGAGATAACT
1 TTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCGAAATAACC
*
57002763 TTGTAGGGTAAAATTACC
1 TTGTAGGGTAGAATTACC
57002781 ATTTTGCCCC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
54 29 0.45
55 35 0.55
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (54 bp):
TTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCGAAATAACC
Found at i:57002929 original size:21 final size:21
Alignment explanation
Indices: 57002905--57002952 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
57002895 TGATAGGACG
*
57002905 TGATATGCACATGATATGTTA
1 TGATATGCACATGATATGCTA
*
57002926 TGATATGTACATGATATGCTA
1 TGATATGCACATGATATGCTA
57002947 TGATAT
1 TGATAT
57002953 ACTCATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (21 bp):
TGATATGCACATGATATGCTA
Found at i:57004453 original size:22 final size:23
Alignment explanation
Indices: 57004428--57004478 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
57004418 TAGGACACAA
*
57004428 CCATAAT-TAGGTTGGCACAGAG
1 CCATAATGTAGGTTGGCACAAAG
*
57004450 CCAT-ATGTAGGTTGGCTCAAAG
1 CCATAATGTAGGTTGGCACAAAG
57004472 CCATAAT
1 CCATAAT
57004479 CAGAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (23 bp):
CCATAATGTAGGTTGGCACAAAG
Found at i:57004957 original size:27 final size:27
Alignment explanation
Indices: 57004894--57005199 Score: 256
Period size: 27 Copynumber: 11.4 Consensus size: 27
57004884 TACAATGGTG
* * * *
57004894 TTTTGGTAAATCTATAAATCAAGGGTC
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * *
57004921 TTTCGATAATTTTCCAAATTAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
57004948 TTTTGGTAATTTTACAAATCAA-GATA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
57004974 TTTTAGTAATTTTACAAGTTAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
57005001 TTTTGGCAATTTCACAAATCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
57005028 TTTTGGCAATTTTACAAACCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
57005055 TTTTAGTAATTTTACAAACCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
57005082 TTTTGGTAATTTTTCTAATCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** *
57005109 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** ** *
57005136 -TTCAGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*** **
57005162 TTTCAATAATTTTGTAAATCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
57005189 TTTTAGTAATT
1 TTTTGGTAATT
57005200 CTACCCTACA
Statistics
Matches: 235, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 46 0.20
27 189 0.80
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:57005188 original size:80 final size:81
Alignment explanation
Indices: 57004913--57005199 Score: 265
Period size: 80 Copynumber: 3.6 Consensus size: 81
57004903 ATCTATAAAT
* * * * * * *
57004913 CAAGGGTCTTTCGATAATTTTCCAAATTAAGGGTATTTTGGTAATTTTACAAATCAA-GATATTT
1 CAAGGGTATTTCAATAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* **
57004977 TAGTAATTTTACAAGT
66 CAGTAATTTTACAAAC
* **** ** * *
57004993 TAAGGGTATTTTGGCAATTTCACAAATCAGGGGTATTTTGGCAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTCAATAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
*
57005058 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* *** * **
57005074 CAGGGGTATTTTGGTAATTTTTCTAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TT
1 CAAGGGTATTTCAATAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
**
57005138 CAGTAATTTTGTAAAC
66 CAGTAATTTTACAAAC
* *
57005154 CAAGGGTATTTCAATAATTTTGT-AAATCAAGGGTATTTTAGTAATT
1 CAAGGGTATTTCAATAATTTT-TCAAATCAGGGGTATTTTGGTAATT
57005200 CTACCCTACA
Statistics
Matches: 170, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
80 97 0.57
81 73 0.43
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTCAATAATTTTTCAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
CAGTAATTTTACAAAC
Found at i:57005273 original size:54 final size:54
Alignment explanation
Indices: 57005188--57005291 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
57005178 AATCAAGGGT
* ** * * *
57005188 ATTTTAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGAACATTTCAATAATACTAGCCTACAGGGGC
*
57005242 ATTTCAGTAATTCTACCCTACAGGAATATTTCAATAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAGGAACATTTCAATAATACTAGCCTACAG
57005292 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (54 bp):
ATTTCAGTAATTCTACCCTACAGGAACATTTCAATAATACTAGCCTACAGGGGC
Found at i:57005279 original size:27 final size:27
Alignment explanation
Indices: 57005188--57005265 Score: 138
Period size: 27 Copynumber: 2.9 Consensus size: 27
57005178 AATCAAGGGT
*
57005188 ATTTTAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
57005215 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
57005242 ATTTCAGTAATTCTACCCTACAGG
1 ATTTCAGTAATTCTACCCTACAGG
57005266 AATATTTCAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:57005288 original size:27 final size:27
Alignment explanation
Indices: 57005188--57005291 Score: 118
Period size: 27 Copynumber: 3.9 Consensus size: 27
57005178 AATCAAGGGT
* **
57005188 ATTTTAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGAAC
* **
57005215 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGAAC
*
57005242 ATTTCAGTAATTCTACCCTACAGGAAT
1 ATTTCAGTAATTCTACCCTACAGGAAC
* * *
57005269 ATTTCAATAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
57005292 ATATGAGATT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGAAC
Found at i:57007359 original size:27 final size:27
Alignment explanation
Indices: 57007321--57007525 Score: 195
Period size: 27 Copynumber: 7.7 Consensus size: 27
57007311 GGTTGTTAAG
*
57007321 ACCTCAGTTTGTAAAATTATTGAAATA
1 ACCTCAGTTTGTAAAATTATCGAAATA
*
57007348 ACCTTAGTTTGTAAAATTATCGAAATA
1 ACCTCAGTTTGTAAAATTATCGAAATA
* * * * *
57007375 CCCCCGGTTTGTAAAATTACCAAAAT-
1 ACCTCAGTTTGTAAAATTATCGAAATA
* *
57007401 GCCTCAGTTTGTAAAATTACCGAAAT-
1 ACCTCAGTTTGTAAAATTATCGAAATA
* *
57007427 ACCTCCAGTTTGTAAACTTACCG-AAT-
1 ACCT-CAGTTTGTAAAATTATCGAAATA
* *
57007453 ACCCCTGATTTGTAAAATTATCGAAATA
1 ACCTCAG-TTTGTAAAATTATCGAAATA
* * * * *
57007481 CCCCCTGTTAGTAAAATTATCGAAATG
1 ACCTCAGTTTGTAAAATTATCGAAATA
57007508 ACC-CAGTTTGTAAAATTA
1 ACCTCAGTTTGTAAAATTA
57007526 CCAAAATACC
Statistics
Matches: 150, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
25 2 0.01
26 57 0.38
27 85 0.57
28 6 0.04
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (27 bp):
ACCTCAGTTTGTAAAATTATCGAAATA
Found at i:57007495 original size:80 final size:78
Alignment explanation
Indices: 57007331--57007577 Score: 232
Period size: 80 Copynumber: 3.1 Consensus size: 78
57007321 ACCTCAGTTT
* * * *
57007331 GTAAAATTATTGAAATAACCT-TAGTTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTAC
1 GTAAAATTATCGAAATAACCTCCAGTTTGTAAAATTACCG-AATA-CCCCTGTTTGTAAAATTA-
* * * * *
57007395 CAAAATGCCTCAGTTT
63 CGAAATACCCCTGTTA
* *
57007411 GTAAAATTACCGAAAT-ACCTCCAGTTTGTAAACTTACCGAATACCCCTGATTTGTAAAATTATC
1 GTAAAATTATCGAAATAACCTCCAGTTTGTAAAATTACCGAATACCCCTG-TTTGTAAAATTA-C
57007475 GAAATACCCCCTGTTA
64 GAAATA-CCCCTGTTA
* * * *
57007491 GTAAAATTATCGAAATGA-C-CCAGTTTGTAAAATTACCAAAATACCCTTGTAGTGTAAAATTAC
1 GTAAAATTATCGAAATAACCTCCAGTTTGTAAAATTACC-GAATACCCCTGT-TTGTAAAATTAC
*
57007554 AGAAATACCCCTGTAAA
64 -GAAATACCCCTGT-TA
57007571 GTAAAAT
1 GTAAAAT
57007578 GACTGTTTTG
Statistics
Matches: 141, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
78 5 0.04
79 51 0.36
80 84 0.60
81 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (78 bp):
GTAAAATTATCGAAATAACCTCCAGTTTGTAAAATTACCGAATACCCCTGTTTGTAAAATTACGA
AATACCCCTGTTA
Found at i:57007547 original size:106 final size:107
Alignment explanation
Indices: 57007321--57007566 Score: 295
Period size: 106 Copynumber: 2.3 Consensus size: 107
57007311 GGTTGTTAAG
* ** * *
57007321 ACCT-CAGTTTGTAAAATTATTGAAATA-ACCTTAGTTTGTAAAATTATCGAAATACCCCCGGTT
1 ACCTCCAGTGTGTAAAATTACAGAAATACCCCTGA-TTTGTAAAATTATCGAAATACCCCCGGTT
* *
57007384 TGTAAAATTACCAAAATGCCTCAGTTTGTAAAATTACCGAAAT
65 AGTAAAATTACCAAAATGCCTCAGTTTGTAAAATTACCAAAAT
* * * *
57007427 ACCTCCAGTTTGTAAACTTACCG-AATACCCCTGATTTGTAAAATTATCGAAATACCCCCTGTTA
1 ACCTCCAGTGTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTATCGAAATACCCCCGGTTA
* *
57007491 GTAAAATTATCGAAATGACC-CAGTTTGTAAAATTACCAAAAT
66 GTAAAATTACCAAAATG-CCTCAGTTTGTAAAATTACCAAAAT
**
57007533 ACC-CTTGTAGTGTAAAATTACAGAAATACCCCTG
1 ACCTCCAGT-GTGTAAAATTACAGAAATACCCCTG
57007567 TAAAGTAAAA
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
105 3 0.03
106 86 0.72
107 31 0.26
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (107 bp):
ACCTCCAGTGTGTAAAATTACAGAAATACCCCTGATTTGTAAAATTATCGAAATACCCCCGGTTA
GTAAAATTACCAAAATGCCTCAGTTTGTAAAATTACCAAAAT
Found at i:57007548 original size:53 final size:54
Alignment explanation
Indices: 57007327--57007559 Score: 242
Period size: 53 Copynumber: 4.4 Consensus size: 54
57007317 TAAGACCTCA
** * * * *
57007327 GTTTGTAAAATTATTGAAATAACCTTAGTTTGTAAAATTATCGAAATACCCCCG
1 GTTTGTAAAATTACCGAAATGACCTCAGTTTGTAAAATTACCGAAATACCCCCT
* * *
57007381 GTTTGTAAAATTACCAAAATG-CCTCAGTTTGTAAAATTACCGAAATACCTCCA
1 GTTTGTAAAATTACCGAAATGACCTCAGTTTGTAAAATTACCGAAATACCCCCT
* * * *
57007434 GTTTGTAAACTTACCG-AAT-ACCCCTGATTTGTAAAATTATCGAAATACCCCCT
1 GTTTGTAAAATTACCGAAATGACCTCAG-TTTGTAAAATTACCGAAATACCCCCT
* * * *
57007487 GTTAGTAAAATTATCGAAATGACC-CAGTTTGTAAAATTACCAAAATA-CCCTT
1 GTTTGTAAAATTACCGAAATGACCTCAGTTTGTAAAATTACCGAAATACCCCCT
* *
57007539 GTAGTGTAAAATTACAGAAAT
1 GT-TTGTAAAATTACCGAAAT
57007560 ACCCCTGTAA
Statistics
Matches: 148, Mismatches: 26, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
52 13 0.09
53 110 0.74
54 22 0.15
55 3 0.02
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (54 bp):
GTTTGTAAAATTACCGAAATGACCTCAGTTTGTAAAATTACCGAAATACCCCCT
Found at i:57007551 original size:27 final size:27
Alignment explanation
Indices: 57007410--57007577 Score: 102
Period size: 27 Copynumber: 6.3 Consensus size: 27
57007400 TGCCTCAGTT
* * *
57007410 TGTAAAATTACCGAAATACCTCCAGT-T
1 TGTAAAATTACAGAAATACC-CCTGTAA
* * *
57007437 TGTAAACTTACCG-AATACCCCTG-ATT
1 TGTAAAATTACAGAAATACCCCTGTA-A
*
57007463 TGTAAAATTATC-GAAATACCCCCTGTTA
1 TGTAAAATTA-CAGAAATA-CCCCTGTAA
* *
57007491 -GTAAAATTATC-GAAATGA-CCCAGT-T
1 TGTAAAATTA-CAGAAAT-ACCCCTGTAA
* *
57007516 TGTAAAATTACCA-AAATACCCTTGTAG
1 TGTAAAATTA-CAGAAATACCCCTGTAA
57007543 TGTAAAATTACAGAAATACCCCTGTAA
1 TGTAAAATTACAGAAATACCCCTGTAA
*
57007570 AGTAAAAT
1 TGTAAAAT
57007578 GACTGTTTTG
Statistics
Matches: 115, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
25 4 0.03
26 42 0.37
27 62 0.54
28 7 0.06
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACAGAAATACCCCTGTAA
Found at i:57010496 original size:3 final size:3
Alignment explanation
Indices: 57010490--57010514 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
57010480 TGTCGTAACT
57010490 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
57010515 AATCTTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:57012400 original size:39 final size:39
Alignment explanation
Indices: 57012345--57012513 Score: 239
Period size: 39 Copynumber: 4.3 Consensus size: 39
57012335 TATGAGACTA
*
57012345 GAAATATATCCAGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
*
57012384 GAAATATATCCGGACATGAGGTCCGTAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
57012423 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTA
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
** * * * *
57012462 GAAATATATCTAGACTTGAGGTCTGCAGGCTATGTGTTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
*
57012501 GAAAAATATCCGG
1 GAAATATATCCGG
57012514 GTTAAAGACC
Statistics
Matches: 114, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (39 bp):
GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:57015350 original size:26 final size:26
Alignment explanation
Indices: 57015314--57015382 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
57015304 TAGACATATT
57015314 TTAAACTTCTTCACTTACTCACTTAC
1 TTAAACTTCTTCACTTACTCACTTAC
57015340 TTAAACTTCTTCACTTACTCACTTAC
1 TTAAACTTCTTCACTTACTCACTTAC
*
57015366 TTAAA-TACTT-ACTTACT
1 TTAAACTTCTTCACTTACT
57015383 TAATCAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 7 0.17
25 4 0.10
26 31 0.74
ACGTcount: A:0.29, C:0.28, G:0.00, T:0.43
Consensus pattern (26 bp):
TTAAACTTCTTCACTTACTCACTTAC
Found at i:57015374 original size:16 final size:16
Alignment explanation
Indices: 57015355--57015385 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57015345 CTTCTTCACT
57015355 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
57015371 TACTTACTTACTTAA
1 TACTCACTTACTTAA
57015386 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:57015391 original size:20 final size:20
Alignment explanation
Indices: 57015352--57015391 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
57015342 AAACTTCTTC
* *
57015352 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
57015372 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
57015392 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:57015794 original size:55 final size:53
Alignment explanation
Indices: 57015666--57015860 Score: 189
Period size: 55 Copynumber: 3.6 Consensus size: 53
57015656 TTACCATTGT
57015666 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
* * * *
57015719 CATGCCTTGGCATGGTCTTACATCGG-A-CCTTTGCCTTATAGTAACTTATCAATGC
1 CATGTCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTAT-G-AACTCACCAATGC
* * * * * **
57015774 CATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTA-GAAACCTTACCGATTTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACC-AATGC
* *
57015829 CATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CATGTCTTGACATGGTCTTACATGGTATCCTT
57015861 AAACCCTAAT
Statistics
Matches: 116, Mismatches: 18, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 34 0.29
54 9 0.08
55 69 0.59
56 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:57033012 original size:20 final size:20
Alignment explanation
Indices: 57032984--57033026 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
57032974 TTCAATATGT
57032984 ACTTAAATCAAGCATACAAA
1 ACTTAAATCAAGCATACAAA
* * *
57033004 ACTTTAATCATGCATTCAAA
1 ACTTAAATCAAGCATACAAA
57033024 ACT
1 ACT
57033027 GAATCAGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (20 bp):
ACTTAAATCAAGCATACAAA
Found at i:57034189 original size:44 final size:44
Alignment explanation
Indices: 57034128--57034213 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
57034118 CCGAATTTAT
* * **
57034128 TCACCGGCATTTCGCCTGCTAAGCTTGAA-GCCCGAATAGTATC
1 TCACCGGCATATAGCCTGCTAAGCTCAAAGGCCCGAATAGTATC
*
57034171 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCAT-ATAGCCTGCTAAGCTCAAAGGCCCGAATAGTA
57034214 CTGTACGATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 10 0.28
44 14 0.39
45 12 0.33
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (44 bp):
TCACCGGCATATAGCCTGCTAAGCTCAAAGGCCCGAATAGTATC
Found at i:57041850 original size:68 final size:66
Alignment explanation
Indices: 57041778--57041949 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
57041768 CATCATGTGT
* * * *
57041778 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
57041841 TGTAG
62 TGTAG
** * *
57041846 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
57041911 AG
65 AG
* * * *
57041913 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
57041950 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:57041883 original size:64 final size:64
Alignment explanation
Indices: 57041802--57041985 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
57041792 AGACATTATG
* * *
57041802 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
57041866 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
57041931 AA
63 AA
* * *
57041933 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
57041986 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:57046275 original size:68 final size:66
Alignment explanation
Indices: 57046203--57046374 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
57046193 CATCATGTGT
* * * *
57046203 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
57046266 TGTAG
62 TGTAG
** * *
57046271 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
57046336 AG
65 AG
* * * *
57046338 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
57046375 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:57046308 original size:64 final size:64
Alignment explanation
Indices: 57046227--57046410 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
57046217 AGACATTATG
* * *
57046227 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
57046291 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
57046356 AA
63 AA
* * *
57046358 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
57046411 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:57050615 original size:22 final size:23
Alignment explanation
Indices: 57050561--57050619 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
57050551 CCTGAGTTGA
*
57050561 TGAACAGTAAGCTCTATTAAGCT
1 TGAACAGTAAGCTCTATCAAGCT
* *
57050584 TGAA-AGGTAAGCTTTATCGAGC-
1 TGAACA-GTAAGCTCTATCAAGCT
57050606 TGAACAGTAAGCTC
1 TGAACAGTAAGCTC
57050620 ATACGAGCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (23 bp):
TGAACAGTAAGCTCTATCAAGCT
Found at i:57059565 original size:11 final size:11
Alignment explanation
Indices: 57059549--57059601 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
57059539 GTATATCATA
57059549 GCATATCATGT
1 GCATATCATGT
*
57059560 GCATATCAT-A
1 GCATATCATGT
*
57059570 ACATATCATGT
1 GCATATCATGT
*
57059581 GCATACCATG-
1 GCATATCATGT
*
57059591 CCATATCATGT
1 GCATATCATGT
57059602 ATAACAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (11 bp):
GCATATCATGT
Found at i:57059565 original size:21 final size:21
Alignment explanation
Indices: 57059541--57059601 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
57059531 TAAAATGAGT
57059541 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
57059562 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
57059583 ATACCAT-GCCATATCATGT
1 ATATCATAG-CATATCATGT
57059602 ATAACAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:57059666 original size:25 final size:25
Alignment explanation
Indices: 57059638--57059686 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
57059628 ATAATCAAAC
* *
57059638 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
57059663 CCTAGGGGCAAAATAGTCATTTTT
1 CCTAGGGGCAAAATAGTCATTTTT
57059687 CATATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:57066975 original size:24 final size:24
Alignment explanation
Indices: 57066934--57066980 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
57066924 GCTTTATCAT
**
57066934 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
57066959 ATAACT-GAGGCAAAGCCCTTTT
1 ATAACTGGAGGCAAAGCCCTTTT
57066981 CGCACATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 9 0.45
25 6 0.30
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:57067052 original size:21 final size:21
Alignment explanation
Indices: 57067028--57067072 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
57067018 TAAAATGAGT
*
57067028 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
57067049 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
57067070 ATA
1 ATA
57067073 CCACGCCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:57067082 original size:21 final size:21
Alignment explanation
Indices: 57067037--57067088 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
57067027 TATATCATAG
* *
57067037 CATATCATGTGCATATCATAA
1 CATATCATGTGCATACCACAA
**
57067058 CATATCATGTGCATACCACGC
1 CATATCATGTGCATACCACAA
57067079 CATATCATGT
1 CATATCATGT
57067089 ATAAAAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.31
Consensus pattern (21 bp):
CATATCATGTGCATACCACAA
Found at i:57067153 original size:25 final size:25
Alignment explanation
Indices: 57067125--57067173 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
57067115 ATAATCAAAC
* *
57067125 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
*
57067150 CCTAGGGGCAAAATAGTTATTTTT
1 CCTAGGGGCAAAATAGTCATTTTT
57067174 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:57078233 original size:8 final size:8
Alignment explanation
Indices: 57078222--57078256 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
57078212 ACAATTCTGA
57078222 ACATTCAC
1 ACATTCAC
57078230 ACATTCAC
1 ACATTCAC
57078238 ACATTCAC
1 ACATTCAC
57078246 ACATTCAC
1 ACATTCAC
57078254 ACA
1 ACA
57078257 AGTCAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (8 bp):
ACATTCAC
Found at i:57078723 original size:12 final size:13
Alignment explanation
Indices: 57078706--57078734 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
57078696 ACCAATTCAG
57078706 ACATTTTTACTT-
1 ACATTTTTACTTC
57078718 ACATTTTTACTTC
1 ACATTTTTACTTC
57078731 ACAT
1 ACAT
57078735 AAAACTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (13 bp):
ACATTTTTACTTC
Found at i:57082659 original size:39 final size:39
Alignment explanation
Indices: 57082605--57082919 Score: 522
Period size: 39 Copynumber: 8.1 Consensus size: 39
57082595 ATTATATTAT
* * *
57082605 CAGCACAAAGCCTGCGGGACTTTAACCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
57082644 CAGCAAGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
57082683 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTG
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
57082722 CAGCACGAAGCCTGCGGGACTTTGGCACGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
57082761 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
57082800 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
57082839 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
57082878 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
57082917 CAG
1 CAG
57082920 TGTCTTGCAT
Statistics
Matches: 255, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 255 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:57087335 original size:15 final size:15
Alignment explanation
Indices: 57087312--57087342 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
57087302 TCAAAAATTC
57087312 CAATACAAAACATAT
1 CAATACAAAACATAT
*
57087327 CAATCCAAAACATAT
1 CAATACAAAACATAT
57087342 C
1 C
57087343 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:57089885 original size:40 final size:40
Alignment explanation
Indices: 57089848--57090071 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
57089838 GCTACTCGTT
* *
57089848 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
57089888 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
57089928 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
57089968 CAAATGCCTTCGGG-CTT-ACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
57090006 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
57090047 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
57090072 CATCATTCGA
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
37 2 0.01
38 30 0.18
39 6 0.04
40 114 0.69
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:57090031 original size:118 final size:120
Alignment explanation
Indices: 57089848--57090071 Score: 296
Period size: 118 Copynumber: 1.9 Consensus size: 120
57089838 GCTACTCGTT
*
57089848 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
57089913 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
57089968 CAAATGCCTTCGGG-CTTA-CCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
57090029 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
57090072 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 62 0.68
119 11 0.12
120 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:57127639 original size:39 final size:41
Alignment explanation
Indices: 57127596--57127706 Score: 149
Period size: 41 Copynumber: 2.8 Consensus size: 41
57127586 GCGTATCGAT
*
57127596 ATAGCTTCGGCTATTAAA-GCACTTAGTGTGTGCA-TCGGA-
1 ATAGCTTCGGCTATTAAAGGCACTTAGTGTGTG-AGACGGAG
*
57127635 ATAGCTTCGGCTA-TAAATGGCACTTAGTGTGTGAGACTGAG
1 ATAGCTTCGGCTATTAAA-GGCACTTAGTGTGTGAGACGGAG
*
57127676 ATAGCTTCGGCTATGAAAGGCACTTAGTGTG
1 ATAGCTTCGGCTATTAAAGGCACTTAGTGTG
57127707 CGAGTTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
38 4 0.06
39 14 0.22
40 17 0.27
41 26 0.41
42 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (41 bp):
ATAGCTTCGGCTATTAAAGGCACTTAGTGTGTGAGACGGAG
Found at i:57127721 original size:41 final size:39
Alignment explanation
Indices: 57127596--57127731 Score: 125
Period size: 41 Copynumber: 3.4 Consensus size: 39
57127586 GCGTATCGAT
* *
57127596 ATAGCTTCGGCTATTAAA-GCACTTAGTGTGTGCA-TCGGA
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGTG-AGTC-AA
* *
57127635 ATAGCTTCGGCTAT-AAATGGCACTTAGTGTGTGAGACTGAG
1 ATAGCTTCGGCTATGAAA-GGCACTTAGTGTGTGAG--TCAA
* *
57127676 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGCGAGTTTATA
1 ATAGCTTCGGCTATGAAAGGCACTTAGTGTGTGAG-TCA-A
*
57127717 ATAGCTTCAGCTATG
1 ATAGCTTCGGCTATG
57127732 CTTTGGCACT
Statistics
Matches: 82, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
38 3 0.04
39 15 0.18
40 16 0.20
41 44 0.54
42 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (39 bp):
ATAGCTTCGGCTATGAAAGGCACTTAGTGTGTGAGTCAA
Found at i:57129250 original size:85 final size:85
Alignment explanation
Indices: 57129106--57129284 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
57129096 GGCCGGCCAT
*
57129106 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
57129171 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57129191 TAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
57129256 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57129276 GGGCATGGG
1 GAGCATGGG
57129285 CAATAAAATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:57131519 original size:47 final size:47
Alignment explanation
Indices: 57131468--57132160 Score: 1253
Period size: 47 Copynumber: 14.7 Consensus size: 47
57131458 TTAGGATTCT
* * *
57131468 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
57131515 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131562 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131609 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131656 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
57131703 ATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131750 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131797 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
57131844 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131891 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131938 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57131985 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57132032 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
57132079 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
57132126 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57132161 TCCCGAAGGG
Statistics
Matches: 628, Mismatches: 17, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
46 1 0.00
47 627 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:57132334 original size:36 final size:36
Alignment explanation
Indices: 57132279--57132355 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 36
57132269 CCGAGCTCTA
* *
57132279 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCC-GGT
*
57132315 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
57132351 AAGAC
1 AAGAC
57132356 TTCGTAATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
Found at i:57133683 original size:39 final size:39
Alignment explanation
Indices: 57133564--57134176 Score: 913
Period size: 39 Copynumber: 15.5 Consensus size: 39
57133554 AGAATTGAGA
*
57133564 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
*
57133604 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
57133644 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
* *
57133683 TGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
*
57133723 TGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
*
57133762 TGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
*
57133801 TGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
*
57133840 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
57133880 TGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
* * * *
57133920 TGATGTATCCGGGCTAAGTCCCAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
*
57133959 TGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
*
57133998 TGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
*
57134037 TGA-ATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
* *
57134076 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAG-TCCGAGGAGCATTCGTGCTAG
* ** * * *
57134116 TGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCT-AAGTCCGAGGAGCATTCGTGCTAG
* * *
57134156 TGTTATATTCGGGCTAGGTCC
1 TGATATATCCGGGCTAAGTCC
57134177 CGAAGAGTAA
Statistics
Matches: 528, Mismatches: 39, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
38 13 0.02
39 266 0.50
40 246 0.47
41 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
TGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
Found at i:57133978 original size:236 final size:238
Alignment explanation
Indices: 57133564--57134197 Score: 1078
Period size: 236 Copynumber: 2.7 Consensus size: 238
57133554 AGAATTGAGA
57133564 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
57133629 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAGTGATGTATCC
66 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
*
57133693 GGGCTAAGTCCCGAGGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTG
131 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTG
57133758 CTAGTGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
196 CTAGTGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
57133801 TGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
57133865 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
66 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
57133930 GGGCTAAGTCCC-AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTG
131 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTG
57133994 CTAGTGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
196 CTAGTGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
* * * *
57134037 TGA-ATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
* ** * * * * * *
57134101 GAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATTC
66 GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
* * * *
57134166 GGGCTAGGTCCCGAAGAGTAATCATGCTGGTG
131 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
57134198 ACGTGTATTC
Statistics
Matches: 376, Mismatches: 18, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
235 14 0.04
236 285 0.76
237 77 0.20
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (238 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
GAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTG
CTAGTGATGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAG
Found at i:57134145 original size:197 final size:197
Alignment explanation
Indices: 57133567--57134176 Score: 972
Period size: 197 Copynumber: 3.1 Consensus size: 197
57133557 ATTGAGATGA
*
57133567 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCGAAGAG
57133632 CATTCGTGCTAGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAGTGATGTATCCGGG
64 CATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGG
* * ** * * *
57133696 CTAAGTCCCGAGGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTA
129 CTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCAAGAGCATTCGTGCTG
*
57133761 GTGA
194 GTGT
*
57133765 TGTATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCA
1 TATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCA
* *
57133830 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCT
66 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCT
* **
57133895 AAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCAAGAGCATTCGTGCTGGT
131 AAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCAAGAGCATTCGTGCTGGT
57133960 GT
196 GT
* *
57133962 TATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAGGAGCA
1 TATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCA
*
57134027 TTCGTGCTAGTGA-ATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCT
66 TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCT
* * *
57134091 AAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGG
131 AAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCC-AAGAGCATTCGTGCTGG
57134156 TGT
195 TGT
* *
57134159 TATATTCGGGCTAGGTCC
1 TATATCCGGGCTAAGTCC
57134177 CGAAGAGTAA
Statistics
Matches: 385, Mismatches: 25, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
196 128 0.33
197 242 0.63
198 15 0.04
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (197 bp):
TATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCA
TTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCT
AAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCCCAAGAGCATTCGTGCTGGT
GT
Found at i:57134197 original size:40 final size:40
Alignment explanation
Indices: 57133564--57134183 Score: 941
Period size: 40 Copynumber: 15.7 Consensus size: 40
57133554 AGAATTGAGA
57133564 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
57133604 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
57133644 TGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
57133683 TGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57133723 TGTTATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57133762 TGATGTATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
57133801 TGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
57133840 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
57133880 TGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57133920 TGATGTATCCGGGCTAAGTCCC-AAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57133959 TGTTATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57133998 TGATGTATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57134037 TGA-ATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
57134076 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* ** * *
57134116 TGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
57134156 TGTTATATTCGGGCTAGGTCCCGAAGAG
1 TGATATATCCGGGCTAAGTCCCGAAGAG
57134184 TAATCATGCT
Statistics
Matches: 535, Mismatches: 40, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
38 15 0.03
39 259 0.48
40 261 0.49
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:57136022 original size:85 final size:85
Alignment explanation
Indices: 57135878--57136056 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
57135868 GGCCGGCCAT
*
57135878 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
57135943 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57135963 TAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
57136028 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
57136048 GGGCATGGG
1 GAGCATGGG
57136057 CAATAAAATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:57138288 original size:47 final size:47
Alignment explanation
Indices: 57138237--57138841 Score: 1014
Period size: 47 Copynumber: 12.7 Consensus size: 47
57138227 TTAGGATTCT
* * *
57138237 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
57138284 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57138331 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57138378 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
57138427 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57138474 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
57138523 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
57138572 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
57138619 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
57138666 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
57138713 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
57138760 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
57138807 ACGTGATGGATGTGAAAGTGTTTAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57138842 TCCCGAAGGG
Statistics
Matches: 537, Mismatches: 16, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 393 0.73
49 143 0.27
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:57138312 original size:25 final size:25
Alignment explanation
Indices: 57138284--57138362 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
57138274 CTAATGGCCG
57138284 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
57138309 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
57138331 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
57138356 ATGTGAT
1 ATGTGAT
57138363 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:57139015 original size:36 final size:37
Alignment explanation
Indices: 57138960--57139037 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
57138950 CCGAGCTCTA
* * *
57138960 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
57138996 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
57139033 AAGAC
1 AAGAC
57139038 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 20 0.54
37 17 0.46
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:57144911 original size:19 final size:19
Alignment explanation
Indices: 57144887--57144950 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
57144877 AGCGAAAAGA
57144887 GATAAAATTGTAGGTTGGT
1 GATAAAATTGTAGGTTGGT
* * * *
57144906 GATAAAGAATTCT-TGATAGT
1 GAT-AA-AATTGTAGGTTGGT
57144926 GATAAAATTGTAGGTTGGT
1 GATAAAATTGTAGGTTGGT
57144945 GATAAA
1 GATAAA
57144951 GAATTCTTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
18 5 0.15
19 15 0.44
20 9 0.26
21 5 0.15
ACGTcount: A:0.38, C:0.02, G:0.27, T:0.34
Consensus pattern (19 bp):
GATAAAATTGTAGGTTGGT
Found at i:57144929 original size:20 final size:20
Alignment explanation
Indices: 57144904--57144965 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
57144894 TTGTAGGTTG
57144904 GTGATAAAGAATTCTTGATA
1 GTGATAAAGAATTCTTGATA
* * * *
57144924 GTGAT-AA-AATTGTAGGTTG
1 GTGATAAAGAATTCT-TGATA
57144943 GTGATAAAGAATTCTTGATA
1 GTGATAAAGAATTCTTGATA
57144963 GTG
1 GTG
57144966 TCACCTTGGA
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
18 5 0.16
19 9 0.29
20 12 0.39
21 5 0.16
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (20 bp):
GTGATAAAGAATTCTTGATA
Found at i:57144941 original size:39 final size:39
Alignment explanation
Indices: 57144887--57144965 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
57144877 AGCGAAAAGA
57144887 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
1 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
57144926 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
1 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
57144965 G
1 G
57144966 TCACCTTGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (39 bp):
GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
Found at i:57146462 original size:24 final size:24
Alignment explanation
Indices: 57146397--57146456 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
57146387 GCTAATGAGT
*
57146397 AGTAAGCTC-TATTGAGCTAGAAAC
1 AGTAAGCTCTTA-TAAGCTAGAAAC
57146421 AGTAAGCTCTTATAAGCTA-AGAAC
1 AGTAAGCTCTTATAAGCTAGA-AAC
57146445 AGTAAGCTCTTA
1 AGTAAGCTCTTA
57146457 CTAGCTGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
23 1 0.03
24 30 0.91
25 2 0.06
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (24 bp):
AGTAAGCTCTTATAAGCTAGAAAC
Found at i:57148689 original size:31 final size:31
Alignment explanation
Indices: 57148644--57148758 Score: 171
Period size: 31 Copynumber: 3.8 Consensus size: 31
57148634 TTATTCTTCA
*
57148644 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
57148674 CATATCACTGAGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
57148705 CATATCACTGGGACAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
57148736 CATATCATTGGGCCGAAG-CTTTT
1 CATATCACTGGGCCGAAGCCTTTT
57148759 ACTGTAAACG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
30 10 0.13
31 66 0.87
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:57148831 original size:42 final size:42
Alignment explanation
Indices: 57148784--57148873 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
57148774 GCCCTTAGGC
*
57148784 CCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGA
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
*
57148826 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
57148868 CCATTT
1 CCATTT
57148874 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
Found at i:57149049 original size:25 final size:25
Alignment explanation
Indices: 57149021--57149090 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
57149011 CTCTTTTAAT
57149021 AACTGGGGCAAAGCCCTTTAT-GATA
1 AACTGGGGCAAAGCCCTTT-TCGATA
*
57149046 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
57149071 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
57149091 AGCACTTCGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:57150107 original size:27 final size:26
Alignment explanation
Indices: 57149985--57150246 Score: 224
Period size: 27 Copynumber: 9.8 Consensus size: 26
57149975 ATTTCATCCT
* * *
57149985 ACAAGGGTGTTTTGGTAAATCTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
** **
57150011 ACCAAGGGTATTTCAGTAATTTTGTAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
* * *
57150038 ACCAATGGTATTTCT-ATAATTTTTAGAA
1 A-CAAGGGTATTT-TGGTAA-TTTTACAA
* **
57150066 AGTCAAGGGTATTTTTGTAATTTTGTAA
1 A--CAAGGGTATTTTGGTAATTTTACAA
*
57150094 ATCAAGGGTATTTTGCTAATTTTACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
** *
57150121 ATTGAGGGTATTTTGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAA
*
57150148 ACCAGTGGTA-TTT-GTAATTTTACAA
1 ACAAG-GGTATTTTGGTAATTTTACAA
*
57150173 ACTAGGGGTATTTTGGTAATTTTACAA
1 AC-AAGGGTATTTTGGTAATTTTACAA
*
57150200 ACTAGGGTATTTTGGTAATTTTACAA
1 ACAAGGGTATTTTGGTAATTTTACAA
*
57150226 ACTAGGGTATTTTGGTAATTT
1 ACAAGGGTATTTTGGTAATTT
57150247 ATCCTACAGG
Statistics
Matches: 195, Mismatches: 32, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
25 17 0.09
26 53 0.27
27 97 0.50
28 15 0.08
29 13 0.07
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
ACAAGGGTATTTTGGTAATTTTACAA
Found at i:57150188 original size:52 final size:52
Alignment explanation
Indices: 57150098--57150246 Score: 214
Period size: 52 Copynumber: 2.8 Consensus size: 52
57150088 TTGTAAATCA
*
57150098 AGGGTATTTTGCTAATTTTACAAA-TTGAGGGTATTTTGGTAATTTCACAAACC
1 AGGGTATTTTG-TAATTTTACAAACTAG-GGGTATTTTGGTAATTTCACAAACC
* *
57150151 AGTGGTA-TTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACC
57150203 AGGGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGGTAATTT
1 AGGGTATTTT-GTAATTTTACAAACTAGGGGTATTTTGGTAATTT
57150247 ATCCTACAGG
Statistics
Matches: 89, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
51 4 0.04
52 57 0.64
53 24 0.27
54 4 0.04
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (52 bp):
AGGGTATTTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTCACAAACC
Found at i:57150262 original size:25 final size:26
Alignment explanation
Indices: 57150071--57150246 Score: 230
Period size: 27 Copynumber: 6.7 Consensus size: 26
57150061 TAGAAAGTCA
* ** *
57150071 AGGGTATTTTTGTAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTACAAA-CT
* *
57150098 AGGGTATTTTGCTAATTTTACAAATT
1 AGGGTATTTTGGTAATTTTACAAACT
* *
57150124 GAGGGTATTTTGGTAATTTCACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACT
57150151 AGTGGTA-TTT-GTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACT
57150176 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
57150203 AGGGTATTTTGGTAATTTTACAAACT
1 AGGGTATTTTGGTAATTTTACAAACT
57150229 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
57150247 ATCCTACAGG
Statistics
Matches: 132, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
25 18 0.14
26 52 0.39
27 62 0.47
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:57150340 original size:54 final size:54
Alignment explanation
Indices: 57150274--57150448 Score: 253
Period size: 54 Copynumber: 3.2 Consensus size: 54
57150264 AGTAATTTAC
** * * *
57150274 AATCGAGGGTAAAATAGTAATTTTTTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
*
57150328 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* *
57150382 AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
*
57150436 AATCGATGGTAAA
1 AATCGAGGGTAAA
57150449 TTTATAATTC
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 108 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:57150369 original size:81 final size:81
Alignment explanation
Indices: 57150274--57150471 Score: 256
Period size: 81 Copynumber: 2.4 Consensus size: 81
57150264 AGTAATTTAC
* * * *
57150274 AATCGAGGGTAAAATAGTAATTTTTTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATAGTAATTCTATAAATC-AAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
57150338 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
* *
57150355 AATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
*
57150420 AAATGGTAATTCTATA
66 AAACGGTAATTCTATA
* * * *
57150436 AATCGATGGTAAATTTA-TAATTCTACAAATCGAGGG
1 AATCGAGGGTAAA-ATAGTAATTCTATAAATCAAGGG
57150472 CATTTCAGTA
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
81 100 0.98
82 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:57150456 original size:27 final size:27
Alignment explanation
Indices: 57150274--57150471 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
57150264 AGTAATTTAC
* * *
57150274 AATCGAGGGTAAAATAGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
57150301 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* *
57150328 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
57150355 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
57150382 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
57150409 AATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * ** *
57150436 AATCGATGGTAAATTTATAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
57150463 AATCGAGGG
1 AATCGAGGG
57150472 CATTTCAGTA
Statistics
Matches: 147, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 145 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:57150483 original size:81 final size:81
Alignment explanation
Indices: 57150317--57150491 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 81
57150307 GGGTAAAATG
* * *
57150317 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTACA
* *
57150382 AATCAAGGGTAAAACG
66 AATCAAGGGCAAAACA
* * * * *
57150398 GTAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATAAATCGATGGTAAATTTATAATTCTACA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTACA
* ***
57150463 AATCGAGGGCATTTCA
66 AATCAAGGGCAAAACA
*
57150479 GTAATTTGGTAAA
1 GTAATTTTGTAAA
57150492 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.32
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTACA
AATCAAGGGCAAAACA
Found at i:57152759 original size:31 final size:31
Alignment explanation
Indices: 57152716--57152829 Score: 144
Period size: 31 Copynumber: 3.7 Consensus size: 31
57152706 TAGTTTTGAC
*
57152716 ATAT-ACTAGGCCGAAGCCTTTCCATAAATT
1 ATATCACTAGGCCGAAGCCTTTTCATAAATT
*
57152746 ATATCACTGGGCCGAAGCCTTTTCATAAATCT
1 ATATCACTAGGCCGAAGCCTTTTCATAAAT-T
* *
57152778 -TATCACTAGGCAGAAGCCTTTTCATAAATC
1 ATATCACTAGGCCGAAGCCTTTTCATAAATT
* *
57152808 ATATCGCTGGGCCGAAG-CTTTT
1 ATATCACTAGGCCGAAGCCTTTT
57152830 ACTGTAAACG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
30 9 0.12
31 63 0.86
32 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (31 bp):
ATATCACTAGGCCGAAGCCTTTTCATAAATT
Found at i:57152902 original size:42 final size:42
Alignment explanation
Indices: 57152855--57152937 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 42
57152845 GCCCTTAAGC
*
57152855 CCATTTCAATACCACATGTAATGTCAAT-AGATGTATGCAAGT
1 CCATTTCAATACCACATGTAATGTCAATGA-ATGTAAGCAAGT
* *
57152897 CCATTTCAATATCATATGTAATGTCAATGAATGTAAGCAAG
1 CCATTTCAATACCACATGTAATGTCAATGAATGTAAGCAAG
57152938 CCTATTTGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 36 0.97
43 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (42 bp):
CCATTTCAATACCACATGTAATGTCAATGAATGTAAGCAAGT
Found at i:57153108 original size:25 final size:25
Alignment explanation
Indices: 57153084--57153135 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
57153074 GGCCTACCCT
57153084 CTTT-TAAT-AACTAGGGCAAAGCC
1 CTTTCTAATAAACTAGGGCAAAGCC
* *
57153107 CTTTCTGATAAACTGGGGCAAAGCC
1 CTTTCTAATAAACTAGGGCAAAGCC
57153132 CTTT
1 CTTT
57153136 TCGGTAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.16
24 3 0.12
25 18 0.72
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
CTTTCTAATAAACTAGGGCAAAGCC
Found at i:57153143 original size:25 final size:26
Alignment explanation
Indices: 57153092--57153161 Score: 90
Period size: 25 Copynumber: 2.8 Consensus size: 26
57153082 CTCTTTTAAT
*
57153092 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTCTGATA
*
57153117 AACTGGGGCAAAGCCCTTTTC-GGTA
1 AACTGGGGCAAAGCCCTTTTCTGATA
* *
57153142 AACCGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
57153162 AGCACTTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAGCCCTTTTCTGATA
Found at i:57156953 original size:27 final size:27
Alignment explanation
Indices: 57156900--57157136 Score: 172
Period size: 27 Copynumber: 8.7 Consensus size: 27
57156890 TTTCATCCTA
* * * * *
57156900 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
57156927 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
57156954 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
57156983 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
57157010 CAAGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTCGGTAATTTTATAAA-C
*
57157038 GAA-GGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
57157064 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * * *
57157091 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * * *
57157118 TACGAGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
57157137 CTATCATACA
Statistics
Matches: 172, Mismatches: 32, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
27 138 0.80
28 18 0.10
29 15 0.09
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:57157018 original size:56 final size:55
Alignment explanation
Indices: 57156927--57157084 Score: 169
Period size: 56 Copynumber: 2.9 Consensus size: 55
57156917 ATCTACAAAC
* *
57156927 CAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCAGTAATTTTGTAAA-CAAGGGTATTTCTGTAATTTTTAAAAAGT
* * *
57156983 CAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTT-TGGTAA-TTTTACAAATT
1 CAAGGGTATTTCAGTAATTTTGTAAA-CAAGGGTATTTCT-GTAATTTTTAAAAAGT
* * * * *
57157038 GAA-GGTATTTCGGTAATTTTATAAACCAGTGGTATTTCGGTAATTTT
1 CAAGGGTATTTCAGTAATTTTGTAAACAAG-GGTATTTCTGTAATTTT
57157085 ACAAACTAGG
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 31 0.36
55 15 0.17
56 38 0.44
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (55 bp):
CAAGGGTATTTCAGTAATTTTGTAAACAAGGGTATTTCTGTAATTTTTAAAAAGT
Found at i:57157127 original size:81 final size:81
Alignment explanation
Indices: 57156987--57157136 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 81
57156977 AAAAGTCAAG
* ** *
57156987 GGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGT
1 GGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTGAAGGTATTTCGGT
57157052 AATTTTATAAACCAGT
66 AATTTTATAAACCAGT
* * *
57157068 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACT-ACGAGTATTTTG
1 GGTATTTCGGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTACAAACTGAAG-GTATTTCG
57157131 GTAATT
64 GTAATT
57157137 CTATCATACA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
80 3 0.05
81 57 0.95
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACTGAAGGTATTTCGGT
AATTTTATAAACCAGT
Found at i:57157153 original size:27 final size:27
Alignment explanation
Indices: 57157013--57157164 Score: 164
Period size: 27 Copynumber: 5.6 Consensus size: 27
57157003 TGTAAATCAA
*
57157013 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
57157039 AAGGTATTTCGGTAATTTTATAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
57157067 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
57157094 GGGTATTTTGGTAATTTTACAAACTAC
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
57157121 GAGTATTTTGGTAATTCTATCATAC-AG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
*
57157148 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
57157165 CGCAATCGAG
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 100 0.95
28 5 0.05
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Done.