Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 183 of 290
Found at i:58930384 original size:26 final size:26
Alignment explanation
Indices: 58930355--58930407 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
58930345 TTTTAGAGTC
* *
58930355 TTGCCGTAAAGGCATCATTTGATAGA
1 TTGCCATAAAGGCATCATTTGACAGA
58930381 TTGCCATAAAGGCATCATTTGACAGA
1 TTGCCATAAAGGCATCATTTGACAGA
58930407 T
1 T
58930408 ATTGCTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (26 bp):
TTGCCATAAAGGCATCATTTGACAGA
Found at i:58930420 original size:28 final size:26
Alignment explanation
Indices: 58930362--58930421 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
58930352 GTCTTGCCGT
* *
58930362 AAAGGCATCATTTGATAGATTGCCAT
1 AAAGGCATCATTTGACAGATTGCCAC
*
58930388 AAAGGCATCATTTGACAGATATTGCTAC
1 AAAGGCATCATTTGACAG--ATTGCCAC
58930416 AAAGGC
1 AAAGGC
58930422 TTTCTTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 17 0.59
28 12 0.41
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (26 bp):
AAAGGCATCATTTGACAGATTGCCAC
Found at i:58931724 original size:20 final size:20
Alignment explanation
Indices: 58931699--58931736 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
58931689 ATGATAAATA
*
58931699 AATGGTATTTGGCACTAATC
1 AATGGTATTTGACACTAATC
58931719 AATGGTATTTGACACTAA
1 AATGGTATTTGACACTAA
58931737 GTGTGCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
AATGGTATTTGACACTAATC
Found at i:58936482 original size:22 final size:20
Alignment explanation
Indices: 58936433--58936482 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
58936423 CCATGCCTAC
*
58936433 ATTCATGAAATTTTTGATGA
1 ATTCATGAAATTATTGATGA
* *
58936453 CTTGATGAAATGATATTGATGA
1 ATTCATGAAAT--TATTGATGA
58936475 ATTCATGA
1 ATTCATGA
58936483 GTTTTGTGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 9 0.39
22 14 0.61
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (20 bp):
ATTCATGAAATTATTGATGA
Found at i:58946705 original size:40 final size:40
Alignment explanation
Indices: 58946468--58946691 Score: 262
Period size: 40 Copynumber: 5.6 Consensus size: 40
58946458 TGAATGATGT
* * * *
58946468 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
58946508 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
58946548 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58946586 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
58946627 CCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
58946667 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
58946692 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
39 36 0.22
40 113 0.71
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:58946713 original size:119 final size:119
Alignment explanation
Indices: 58946467--58946724 Score: 326
Period size: 119 Copynumber: 2.2 Consensus size: 119
58946457 TTGAATGATG
* * *
58946467 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATTT
* **
58946532 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * *
58946586 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCAGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATT
* * *
58946650 TGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
65 TGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
58946706 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
58946725 TACGTGATTT
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
118 2 0.02
119 88 0.73
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:58954754 original size:40 final size:39
Alignment explanation
Indices: 58954697--58954939 Score: 276
Period size: 40 Copynumber: 6.1 Consensus size: 39
58954687 TTGAATGATG
* * *
58954697 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
*
58954737 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* * *
58954776 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
*
58954816 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
* *
58954855 ACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
58954895 ACCGGGCTATGTCCCGAAGGCATATGAGCGAG-TAGCTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATA
58954935 TCCGG
1 TCCGG
58954940 TTAAATTCCG
Statistics
Matches: 177, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 71 0.40
40 98 0.55
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:58954942 original size:118 final size:118
Alignment explanation
Indices: 58954697--58954953 Score: 326
Period size: 118 Copynumber: 2.2 Consensus size: 118
58954687 TTGAATGATG
* *
58954697 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGT-CCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* *
58954762 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
65 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAA
* * *
58954816 TCCGGGTTAAGTCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* *
58954880 GTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATAT-GAGCGAG-TAGCTATA
65 GTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAT-TGGAGCGAGTTA-CTAAA
*
58954935 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTT-AAGTCCGAAGG
58954954 TACGTGATTT
Statistics
Matches: 122, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
117 2 0.02
118 67 0.55
119 52 0.43
120 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGTTAAGTCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACTAAA
Found at i:58954953 original size:79 final size:79
Alignment explanation
Indices: 58954736--58954927 Score: 228
Period size: 79 Copynumber: 2.4 Consensus size: 79
58954726 AAGTGACCAT
* * * * * *
58954736 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-TCCGAAGGCATATGAGCGAGTTACTATA-ACCGGACTAAGATCCGAAGGCAT
58954799 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* * * *
58954815 ATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGATCCGAAGGCATTT
1 ATCCGGGCTAAGTCCGAAGGCATATGAGCGAGTTACTATAACCGGACTAAGATCCGAAGGCATTG
58954880 GTGCGAGTTACTATA
66 GTGCGAGTTACTA-A
*
58954895 A-CCGGGCTATGTCCCGAAGGCATATGAGCGAGT
1 ATCCGGGCTAAGT-CCGAAGGCATATGAGCGAGT
58954928 AGCTATATCC
Statistics
Matches: 99, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
78 35 0.35
79 44 0.44
80 20 0.20
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCGAAGGCATATGAGCGAGTTACTATAACCGGACTAAGATCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:58966143 original size:31 final size:32
Alignment explanation
Indices: 58966105--58966166 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
58966095 CTCGCTGTAA
* *
58966105 TCTGGTGGCTTCGCCACAA-ATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
58966136 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
58966167 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:58980149 original size:42 final size:42
Alignment explanation
Indices: 58980100--58980211 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 42
58980090 AGACTATGTA
* * *
58980100 TAAGACCATATCTGGGATATGGCATCT-ATATGAGA-CTTCGTG
1 TAAGACCATATCTGGGATATGGCAT-TGATACGAGATC-CCATG
* *
58980142 TAAGACCATAGCTGGGCTATTGGCATTGATACGAGATCCCATG
1 TAAGACCATATCTGGGATA-TGGCATTGATACGAGATCCCATG
58980185 TAAGACCATATCTGGGATATGGCATTG
1 TAAGACCATATCTGGGATATGGCATTG
58980212 TTATGGTACC
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 26 0.43
43 33 0.55
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATTGATACGAGATCCCATG
Found at i:58982368 original size:17 final size:18
Alignment explanation
Indices: 58982327--58982369 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
58982317 ACGAAATTTT
*
58982327 AATAGTATTATGAGATAA
1 AATATTATTATGAGATAA
*
58982345 AATTATTATTATTAGA-AA
1 AA-TATTATTATGAGATAA
58982363 AATATTA
1 AATATTA
58982370 CTGCATGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 6 0.27
19 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (18 bp):
AATATTATTATGAGATAA
Found at i:58984013 original size:20 final size:20
Alignment explanation
Indices: 58983970--58984017 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
58983960 GCTGTTTTGT
58983970 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
58983990 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
58984009 TAT-GGCCAA
1 TATGGGCCAA
58984018 GGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:58984083 original size:27 final size:28
Alignment explanation
Indices: 58984044--58984156 Score: 99
Period size: 28 Copynumber: 3.9 Consensus size: 28
58984034 ACTTGTAATA
58984044 GGGCTATGGCCCAGATTAATACTGATAT
1 GGGCTATGGCCCAGATTAATACTGATAT
*
58984072 GGGCTA-GGCCCA-ATATATTCTGATACTG-TAAG
1 GGGCTATGGCCCAGAT-TA-----ATACTGAT-AT
*
58984104 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTATGGCCCAGATTAATACTGATAT
* *
58984132 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTATGGCCCAGATTAATACTGAT
58984157 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
26 2 0.03
27 17 0.25
28 25 0.36
29 1 0.01
31 1 0.01
32 13 0.19
33 8 0.12
34 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (28 bp):
GGGCTATGGCCCAGATTAATACTGATAT
Found at i:58984084 original size:60 final size:59
Alignment explanation
Indices: 58984008--58984144 Score: 179
Period size: 60 Copynumber: 2.3 Consensus size: 59
58983998 AACTGTGTTA
* *
58984008 ATATGGCCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTATGGCCCAGATTAATACTG
1 ATATGGGCTAGGCCCAATATATTCT-GA-TATGTAA-AGGGCTATGGCCCAGATTAATACTG
* *
58984068 ATATGGGCTAGGCCCAATATATTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATTCTGATA-TGTAAAGGGCTATGGCCCAGATTAATACTG
58984128 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
58984145 GTTAACACTG
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
59 1 0.01
60 53 0.77
61 15 0.22
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATATTCTGATATGTAAAGGGCTATGGCCCAGATTAATACTG
Found at i:58991267 original size:47 final size:47
Alignment explanation
Indices: 58991208--58991373 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
58991198 ACATTGGCAC
58991208 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCACTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCACTTGG
58991255 TAAGACAAGGAT---ATGTAAGACCATGTTTGGAACATGGCACTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCACTTGG
* *
58991299 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCACTTGG
* *
58991346 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
58991374 CCAAGGCATG
Statistics
Matches: 112, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
44 44 0.39
47 68 0.61
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCACTTGG
Found at i:58991416 original size:54 final size:54
Alignment explanation
Indices: 58991352--58991613 Score: 298
Period size: 54 Copynumber: 4.9 Consensus size: 54
58991342 TTGGTAAGAT
*
58991352 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* *
58991406 AAGGAAATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATACGGC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
** * *
58991460 AAGGAAATCATGTAAGACCATGTTAAGCCATGGCATTGATGAGTTACTATAAGG-
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* * *
58991514 AA--AATGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGAA-AT--CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * * * *
58991568 AAGGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTTC
1 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
58991614 AAAAAGGAAA
Statistics
Matches: 178, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.01
53 39 0.22
54 96 0.54
55 40 0.22
56 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:58994608 original size:33 final size:33
Alignment explanation
Indices: 58994571--58994678 Score: 112
Period size: 33 Copynumber: 3.3 Consensus size: 33
58994561 TGGCCCTGAC
58994571 ATGGTCTTACATTCGTAGTGCCATAACCCAATT
1 ATGGTCTTACATTCGTAGTGCCATAACCCAATT
* * * * *
58994604 ATGGTCTTATCA-TCAG-AATGCTATAGCCTAACT
1 ATGGTCTTA-CATTC-GTAGTGCCATAACCCAATT
* * *
58994637 ATGGTCTTACGTCCATAGTGCCATAACCCAATT
1 ATGGTCTTACATTCGTAGTGCCATAACCCAATT
58994670 ATGGTCTTA
1 ATGGTCTTA
58994679 TCATAAGAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 8
0.73 0.16 0.10
Matches are distributed among these distances:
32 1 0.02
33 54 0.93
34 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (33 bp):
ATGGTCTTACATTCGTAGTGCCATAACCCAATT
Found at i:58994645 original size:66 final size:66
Alignment explanation
Indices: 58994571--58994714 Score: 225
Period size: 66 Copynumber: 2.2 Consensus size: 66
58994561 TGGCCCTGAC
* * * *
58994571 ATGGTCTTACATTCGTAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCTATAGCCTAAC
1 ATGGTCTTACATCCATAGTGCCATAACCCAATTATGGTCTTATCATAAGAATGCTATAGCCCAAC
58994636 T
66 T
*
58994637 ATGGTCTTACGTCCATAGTGCCATAACCCAATTATGGTCTTATCATAAGAATGCTATAGCCCAAC
1 ATGGTCTTACATCCATAGTGCCATAACCCAATTATGGTCTTATCATAAGAATGCTATAGCCCAAC
58994702 T
66 T
**
58994703 ATGAACTTACAT
1 ATGGTCTTACAT
58994715 ATAAACACTG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (66 bp):
ATGGTCTTACATCCATAGTGCCATAACCCAATTATGGTCTTATCATAAGAATGCTATAGCCCAAC
T
Found at i:58994700 original size:33 final size:32
Alignment explanation
Indices: 58994597--58994705 Score: 114
Period size: 33 Copynumber: 3.3 Consensus size: 32
58994587 AGTGCCATAA
*
58994597 CCCAATTATGGTCTTATCATCAGAATGCTATAG
1 CCCAACTATGGTCTTATCAT-AGAATGCTATAG
* * *
58994630 CCTAACTATGGTCTTACGTCCATAG--TGCCATAA
1 CCCAACTATGGTCTTA--T-CATAGAATGCTATAG
*
58994663 CCCAATTATGGTCTTATCATAAGAATGCTATAG
1 CCCAACTATGGTCTTATCAT-AGAATGCTATAG
58994696 CCCAACTATG
1 CCCAACTATG
58994706 AACTTACATA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
30 3 0.05
31 3 0.05
33 49 0.80
35 3 0.05
36 3 0.05
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (32 bp):
CCCAACTATGGTCTTATCATAGAATGCTATAG
Found at i:58998405 original size:25 final size:24
Alignment explanation
Indices: 58998369--58998439 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
58998359 TTTTCCTCCT
* *
58998369 AAATTTTAAATTTATTTAATTATTTA
1 AAATTTT-AATTAATTGAATTA-TTA
58998395 AAATTTTAATTAATTGAATTATTA
1 AAATTTTAATTAATTGAATTATTA
* *
58998419 ATATTTTATACTAATTGAATT
1 AAATTTTA-ATTAATTGAATT
58998440 TTTGATAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
24 10 0.25
25 23 0.57
26 7 0.17
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (24 bp):
AAATTTTAATTAATTGAATTATTA
Found at i:59002549 original size:154 final size:155
Alignment explanation
Indices: 59002269--59002573 Score: 531
Period size: 154 Copynumber: 2.0 Consensus size: 155
59002259 GCGGTTACTG
* *
59002269 GGCCGAAGCTTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATCACTGGGC
1 GGCCGAAGCATTTTCATAAATCATATCACAAGGCCGAAGCCTTATCATAAATCATATCACTGGGC
* **
59002334 CGAAGCCTTATCATAAATCATATCACTGGGCTGAAGCCTTATCATAAATCATATCACTAGG-CTT
66 CGAAGCCTTATCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCATATCACTAGGCCAA
*
59002398 CGCCTTATCATAAATCATATCTCTA
131 AGCCTTATCATAAATCATATCTCTA
59002423 GGCCGAAGCATTTTCATAAATCATATCACAAGGCCGAAGCCTTATCATAAATCATATCACTGGGC
1 GGCCGAAGCATTTTCATAAATCATATCACAAGGCCGAAGCCTTATCATAAATCATATCACTGGGC
*
59002488 CGAAGCCTTATCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCATATCTCTAGGCCAA
66 CGAAGCCTTATCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCATATCACTAGGCCAA
*
59002553 AGCCTTTTCATAAATCATATC
131 AGCCTTATCATAAATCATATC
59002574 ATTGGGTCGA
Statistics
Matches: 142, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
154 122 0.86
155 20 0.14
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.29
Consensus pattern (155 bp):
GGCCGAAGCATTTTCATAAATCATATCACAAGGCCGAAGCCTTATCATAAATCATATCACTGGGC
CGAAGCCTTATCATAAATCATATCACTGGGCCGAAGCCTTATCATAAATCATATCACTAGGCCAA
AGCCTTATCATAAATCATATCTCTA
Found at i:59002590 original size:31 final size:31
Alignment explanation
Indices: 59002265--59002589 Score: 463
Period size: 31 Copynumber: 10.5 Consensus size: 31
59002255 TTTAGCGGTT
* *
59002265 ACTGGGCCGAAGCTTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
59002296 ACTAGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
59002327 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
*
59002358 ACTGGGCTGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* ***
59002389 ACTAGG-CTTCGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * * *
59002419 TCTAGGCCGAAGCATTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
**
59002450 ACAAGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
59002481 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
59002512 ACTGGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* * * *
59002543 TCTAGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTATCATAAATCATATC
* *
59002574 ATTGGGTCGAAGCCTT
1 ACTGGGCCGAAGCCTT
59002590 TACTATAAAT
Statistics
Matches: 262, Mismatches: 31, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
30 25 0.10
31 237 0.90
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTATCATAAATCATATC
Found at i:59002865 original size:25 final size:24
Alignment explanation
Indices: 59002796--59002877 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
59002786 CTGGAGGCCT
*
59002796 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
59002820 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
59002844 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
59002869 AGCCCTTTT
1 AGCCCTTTT
59002878 AGCACTTCCT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 7 0.13
24 24 0.45
25 22 0.42
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:59003720 original size:27 final size:26
Alignment explanation
Indices: 59003685--59003762 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
59003675 GGGCATATTC
59003685 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
59003712 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
**
59003739 GTTTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ATAGGGGTATT
59003763 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
26 4 0.10
27 34 0.83
28 3 0.07
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:59003833 original size:27 final size:27
Alignment explanation
Indices: 59003780--59004394 Score: 261
Period size: 27 Copynumber: 22.7 Consensus size: 27
59003770 TTTCACCCTA
* * * * *
59003780 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
59003807 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
59003834 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* * *
59003863 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
59003890 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
59003917 TAAGGGTATTTTGGTAATTTCATAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
59003944 C-AGTGGTATTTT-GATAATTTTACAAAC
1 CAAG-GGTATTTTAG-TAATTTTATAAAC
* * * * *
59003971 TAGGGGTATTATGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
59003998 CAATGGTATTTTAGTAATTTTATAGA-
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * * *
59004024 CTAGGGTAATTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
* * *
59004051 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
59004078 CAAGGGTATTTTAGTAATTTTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* **** * * *
59004105 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
*** * *
59004132 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *** * * * *
59004159 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* ***** * * *
59004186 CGAGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * * **
59004213 CGAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * * ***
59004240 CGAGGGTATTTTAATAAGTTTACAGGT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
59004267 CGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
59004294 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
59004321 TAAGGGTATTTT-GATAATTTTACAAAC
1 CAAGGGTATTTTAG-TAATTTTATAAAC
* * * * *
59004348 TAGGGGTATTTTGGTAGTTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
59004375 TAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTTAGTAATTT
59004395 GGTAAACTAA
Statistics
Matches: 482, Mismatches: 93, Indels: 26
0.80 0.15 0.04
Matches are distributed among these distances:
26 25 0.05
27 425 0.88
28 19 0.04
29 13 0.03
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:59004107 original size:54 final size:54
Alignment explanation
Indices: 59003782--59004394 Score: 335
Period size: 54 Copynumber: 11.3 Consensus size: 54
59003772 TCACCCTACA
* * * * * * * * *
59003782 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
59003836 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATC-
1 AGGGTATTT-TGGTAA-TTTTATAAA-TCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * *
59003891 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTGGTAATTTCATAAA-CC
1 A-GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * * * * *
59003945 AGTGGTATTTTGATAATTTTACAAA-CTAGGGGTATTATGGTAATTTTACAAACCA
1 AG-GGTATTTTGGTAATTTTATAAATC-AAGGGTATTTTAGTAATTTTATAAATCG
* * * * * * *
59004000 ATGGTATTTTAGTAATTTTATAGA-CTAGGGTAATTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTA-TAAATCG
* *
59004053 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
***** * * *** *
59004107 AGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
*** * * * ***** * *
59004161 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
* * * * * * * **
59004215 AGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAATAAGTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
** * * * *
59004269 AGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAA-CTA
1 AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATC-G
* * * * * * *
59004323 AGGGTATTTTGATAATTTTACAAA-CTAGGGGTATTTTGGTAGTTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTATAAATC-AAGGGTATTTTAGTAATTTTATAAATCG
59004376 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
59004395 GGTAAACTAA
Statistics
Matches: 444, Mismatches: 100, Indels: 30
0.77 0.17 0.05
Matches are distributed among these distances:
53 45 0.10
54 345 0.78
55 19 0.04
56 35 0.08
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTTAGTAATTTTATAAATCG
Found at i:59006685 original size:31 final size:31
Alignment explanation
Indices: 59006647--59006810 Score: 258
Period size: 31 Copynumber: 5.3 Consensus size: 31
59006637 ACGGTTACTG
*
59006647 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTATCATAAATCATATCACTA
*
59006678 GGCCGAAGCCTTATCATAAATCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTA
59006709 GGCCGAAGCCTTATCATAAATCATATCACTA
1 GGCCGAAGCCTTATCATAAATCATATCACTA
*
59006740 GGCCGAAGCCTTATCATAAATCATATCTCT-
1 GGCCGAAGCCTTATCATAAATCATATCACTA
* * *
59006770 GCGCCGAAGCCTTTTCATAAATCATATCATTG
1 G-GCCGAAGCCTTATCATAAATCATATCACTA
59006802 GGCCGAAGC
1 GGCCGAAGC
59006811 ATTTATTGTA
Statistics
Matches: 124, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
30 1 0.01
31 122 0.98
32 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (31 bp):
GGCCGAAGCCTTATCATAAATCATATCACTA
Found at i:59006709 original size:62 final size:62
Alignment explanation
Indices: 59006643--59006810 Score: 291
Period size: 62 Copynumber: 2.7 Consensus size: 62
59006633 TTTAACGGTT
59006643 ACTGGGCCGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
*
59006705 ACTGGGCCGAAGCCTTATCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
* * * *
59006767 TCTGCGCCGAAGCCTTTTCATAAATCATATCATTGGGCCGAAGC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGC
59006811 ATTTATTGTA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 100 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (62 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATCACTAGGCCGAAGCCTTATCATAAATCATATC
Found at i:59007090 original size:25 final size:24
Alignment explanation
Indices: 59007020--59007101 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
59007010 ATGGAGGCCT
*
59007020 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
59007044 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* * *
59007068 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
59007093 AGCCCTTTT
1 AGCCCTTTT
59007102 AGCACTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 7 0.13
24 24 0.46
25 21 0.40
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:59007944 original size:27 final size:26
Alignment explanation
Indices: 59007909--59007986 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 26
59007899 GGGCATATTT
59007909 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
59007936 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
**
59007963 GTTTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ATAGGGGTATT
59007987 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
26 4 0.10
27 34 0.83
28 3 0.07
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:59008057 original size:27 final size:27
Alignment explanation
Indices: 59008004--59008336 Score: 212
Period size: 27 Copynumber: 12.3 Consensus size: 27
59007994 TTTCACCCTA
* * * * *
59008004 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
59008031 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
59008058 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-C
* * *
59008087 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
59008114 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
59008141 TAAGGGTGTTTT-GTTATTTTCACAAAC
1 CAAGGGTATTTTAGTAATTTT-ATAAAC
*
59008168 C-AGTGGTATTTT-GATAATTTTACAAAC
1 CAAG-GGTATTTTAG-TAATTTTATAAAC
* * * * *
59008195 TAGGGGTATTATGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
59008222 C-AGGAGTATTTTAGTAATTTTACAAAC
1 CAAGG-GTATTTTAGTAATTTTATAAAC
* * * *
59008249 C-AGGGTAATTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTAGTAATTTTA-TAAAC
* * *
59008275 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
59008302 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAC
59008329 CAAGGGTA
1 CAAGGGTA
59008337 AAACAGTAAT
Statistics
Matches: 246, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
26 29 0.12
27 180 0.73
28 24 0.10
29 13 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:59008293 original size:80 final size:81
Alignment explanation
Indices: 59008115--59008322 Score: 244
Period size: 80 Copynumber: 2.6 Consensus size: 81
59008105 TTTGTAAATC
** * * *
59008115 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTGTTTT-GTTATTTTCACAAACCAGTGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAA-CCAGGGTATTTTAGTAATTTTCACAAACCAGTGGTAATT
*
59008179 TGATAATTTTACAAACT
65 TGATAATTTTACAAACG
*
59008196 AGGGGTATTATGGTAATTTTACAAACCAGGAGTATTTTAGTAATTTT-ACAAACCAG-GGTAATT
1 AGGGGTATTTTGGTAATTTTACAAACCAGG-GTATTTTAGTAATTTTCACAAACCAGTGGTAATT
* * *
59008259 TGGTAATTTTACTGATCG
65 TGATAATTTTAC-AAACG
**
59008277 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTAGTAATTTT
59008323 GTAAATCAAG
Statistics
Matches: 110, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
80 58 0.53
81 45 0.41
82 7 0.06
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTAGTAATTTTCACAAACCAGTGGTAATTT
GATAATTTTACAAACG
Found at i:59008335 original size:54 final size:54
Alignment explanation
Indices: 59008004--59008336 Score: 255
Period size: 54 Copynumber: 6.1 Consensus size: 54
59007994 TTTCACCCTA
* * * * *
59008004 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
* * * * *
59008058 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTTAGTAATTTTGTAAAT
* ** * * * *
59008114 CAGGGGTATTTTGGTAATTTTACAAATTAAGGGTGTTTT-GTTATTTT-CACAAA
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTA-AAT
* * * * * * **
59008167 CCAGTGGTATTTTGATAATTTTACAAACTAGGGGTATTATGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
* * * * * *
59008221 CCAGGAGTATTTTAGTAATTTTACAAACC-AGGGTAATTTGGTAATTTTACT-GAT
1 CAAGG-GTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT-GTAAAT
* **
59008275 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
59008329 CAAGGGTA
1 CAAGGGTA
59008337 AAACAGTAAT
Statistics
Matches: 221, Mismatches: 45, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
52 1 0.00
53 50 0.23
54 107 0.48
55 25 0.11
56 38 0.17
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:59008344 original size:27 final size:27
Alignment explanation
Indices: 59008314--59008442 Score: 168
Period size: 27 Copynumber: 4.7 Consensus size: 27
59008304 AGGGTATTTT
*
59008314 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
59008341 AGTAATACTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
59008368 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
59008395 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCAAGGGTAAAAC
* *
59008422 GGTAATTATGTAAATCGAAGG
1 AGTAATTCTGTAAATC-AAGG
59008443 TACTTTGGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 87 0.97
28 3 0.03
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:59008346 original size:54 final size:54
Alignment explanation
Indices: 59008288--59008420 Score: 167
Period size: 54 Copynumber: 2.5 Consensus size: 54
59008278 GGGTATTTTG
* * *** * *
59008288 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
* * *
59008342 GTAATACTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
*
59008396 GTAATTCTGTAAATCGAGGGTAAAA
1 GTAATTCTGTAAATCAAGGGTAAAA
59008421 CGGTAATTAT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.30
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
Found at i:59008455 original size:54 final size:54
Alignment explanation
Indices: 59008287--59008444 Score: 156
Period size: 54 Copynumber: 2.9 Consensus size: 54
59008277 AGGGTATTTT
* * **** * *
59008287 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATC-AAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAAATCGAA-GGTAAAAC
* * * * *
59008341 AGTAATACTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAAATCGAAGGTAAAAC
* * *
59008395 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGAAGGTA
1 GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAAATCGAAGGTA
59008445 CTTTGGTAAT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 84 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAAATCGAAGGTAAAAC
Found at i:59008466 original size:27 final size:27
Alignment explanation
Indices: 59008436--59008618 Score: 97
Period size: 27 Copynumber: 6.8 Consensus size: 27
59008426 ATTATGTAAA
*
59008436 TCGAAGGTACTTTGGTAATTTTACAAG
1 TCGAAGGTATTTTGGTAATTTTACAAG
** * *
59008463 TCG-AGAGTATTTTAATAAGTTTACAGG
1 TCGAAG-GTATTTTGGTAATTTTACAAG
* * * *
59008490 TCGAGGGTATTTTAGTAATTTCACAAA
1 TCGAAGGTATTTTGGTAATTTTACAAG
* *
59008517 T-TATGGGTATTTTGGTAATTTTACAA-
1 TCGA-AGGTATTTTGGTAATTTTACAAG
* * *
59008543 ACTAAGGGTATTTTGATAATTTTACAA-
1 TCGAA-GGTATTTTGGTAATTTTACAAG
* * * *
59008570 ACCAGGGGTATTTTGGTAGTTTTACAA-
1 TCGA-AGGTATTTTGGTAATTTTACAAG
* * *
59008597 ACTAGGGGTATTTTGGTAATTT
1 TCGA-AGGTATTTTGGTAATTT
59008619 GGTAAACTAA
Statistics
Matches: 127, Mismatches: 23, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
26 3 0.02
27 123 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
TCGAAGGTATTTTGGTAATTTTACAAG
Found at i:59008531 original size:81 final size:81
Alignment explanation
Indices: 59008441--59008618 Score: 198
Period size: 81 Copynumber: 2.2 Consensus size: 81
59008431 GTAAATCGAA
* * * ***
59008441 GGTACTTTGGTAATTTTAC-AAGTCGAGAGTATTTTAATAAGTTTACAGGTC-GAGGGTATTTTA
1 GGTATTTTGGTAATTTTACAAACT-AAGAGTATTTTAATAAGTTTACAAACCAG-GGGTATTTTA
* *
59008504 GTAATTTCACAAATTATG
64 GTAATTTCACAAACTAGG
* * * *
59008522 GGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACTAAGAGTATTTTAATAAGTTTACAAACCAGGGGTATTTTAGT
* *
59008587 AGTTTTACAAACTAGG
66 AATTTCACAAACTAGG
59008603 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
59008619 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 77 0.95
82 4 0.05
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTACAAACTAAGAGTATTTTAATAAGTTTACAAACCAGGGGTATTTTAGT
AATTTCACAAACTAGG
Found at i:59008627 original size:27 final size:27
Alignment explanation
Indices: 59008494--59008618 Score: 178
Period size: 27 Copynumber: 4.6 Consensus size: 27
59008484 TACAGGTCGA
* * * *
59008494 GGGTATTTTAGTAATTTCACAAATTAT
1 GGGTATTTTGGTAATTTTACAAACTAG
*
59008521 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
59008548 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
59008575 GGGTATTTTGGTAGTTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
59008602 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
59008619 GGTAAACTAA
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:59013631 original size:6 final size:6
Alignment explanation
Indices: 59013620--59013806 Score: 145
Period size: 6 Copynumber: 30.8 Consensus size: 6
59013610 AACCAAAATG
* * *
59013620 AGAATC AGAATC AGAAAC AGTAA-C AGAATT AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
59013668 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
59013717 AGAATC AGTAA-C AGAATC AAAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
59013765 AGAATC AGAATC AAAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
59013807 GTGAATGCAA
Statistics
Matches: 144, Mismatches: 21, Indels: 32
0.73 0.11 0.16
Matches are distributed among these distances:
5 11 0.08
6 121 0.84
7 9 0.06
8 3 0.02
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:59013635 original size:30 final size:30
Alignment explanation
Indices: 59013599--59013806 Score: 200
Period size: 30 Copynumber: 7.1 Consensus size: 30
59013589 AAGAAACATT
* *
59013599 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAGAATCAGAATCAGA
** * *
59013629 ATCAGAAACAGTAACAGAATTAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
59013659 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAGAATCAGAATCAGA
*
59013689 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAGAATCAGAATCAGA
*
59013720 ATCAG---T---AACAGAATCAAAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
* *
59013744 ATCAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAGAATCAGAATCAGA
*
59013774 ATCAAAATTACGTG-ACAGAATCAGAATCAGA
1 ATCAGAATTA-G-GAACAGAATCAGAATCAGA
59013805 AT
1 AT
59013807 GTGAATGCAA
Statistics
Matches: 150, Mismatches: 16, Indels: 23
0.79 0.08 0.12
Matches are distributed among these distances:
24 21 0.14
27 1 0.01
28 1 0.01
29 1 0.01
30 80 0.53
31 46 0.31
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
ATCAGAATTAGGAACAGAATCAGAATCAGA
Found at i:59013806 original size:85 final size:85
Alignment explanation
Indices: 59013620--59013806 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
59013610 AACCAAAATG
* * *
59013620 AGAATCAGAATCAGAAACAGTAACAGAATTAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
59013685 CAGAATCAGAATTAGGTGAC
66 CAGAATCAAAATTACGTGAC
*
59013705 AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATATTAGTAACAGAATCAGAAT
59013770 CAGAATCAAAATTACGTGAC
66 CAGAATCAAAATTACGTGAC
59013790 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
59013807 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTACGTGAC
Found at i:59013961 original size:27 final size:26
Alignment explanation
Indices: 59013924--59013997 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
59013914 AGCATGGCTG
*
59013924 CCAGAACAGATATTG-GGACAGAGTCA
1 CCAGAACAGATATTGTGG-CAGAGCCA
59013950 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
59013977 CCAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
59013998 AACCCACCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.81
28 2 0.05
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:59014004 original size:27 final size:27
Alignment explanation
Indices: 59013948--59014005 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
59013938 GGGACAGAGT
* * *
59013948 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
59013975 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
59014002 CACC
1 CACC
59014006 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:59014210 original size:22 final size:22
Alignment explanation
Indices: 59014162--59014220 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
59014152 GTAAATACGT
*
59014162 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
59014184 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
59014206 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
59014221 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:59014387 original size:27 final size:26
Alignment explanation
Indices: 59014308--59014390 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
59014298 TCGATCGGTC
* * *
59014308 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
59014334 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
59014361 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
59014388 AAC
1 AAC
59014391 GCTTTCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:59014618 original size:27 final size:26
Alignment explanation
Indices: 59014588--59014776 Score: 175
Period size: 27 Copynumber: 7.0 Consensus size: 26
59014578 AAGGGAAAAA
*
59014588 TGGTAATTTTATCCC-ACAAGGGTATCT
1 TGGTAATTCTA-CCCTACAAGGGTAT-T
*
59014615 TGGTAATTCTACCCTACAGGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATT
*
59014641 TCGGTATTTCTACCCTACAAGGGTATT
1 T-GGTAATTCTACCCTACAAGGGTATT
* * *
59014668 TCGATAATTCTACCCTATAGGGGTATTT
1 T-GGTAATTCTACCCTACAAGGGTA-TT
* *
59014696 TGGTAATTCTATCCTATAAGGGTATT
1 TGGTAATTCTACCCTACAAGGGTATT
** * *
59014722 TCAATAATTCTACCCTATAGGGGTATT
1 T-GGTAATTCTACCCTACAAGGGTATT
*
59014749 TCGGAAATTCTACCCT-CAAGGGGTATT
1 T-GGTAATTCTACCCTACAA-GGGTATT
59014776 T
1 T
59014777 CAGTAATTTC
Statistics
Matches: 137, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.07
27 125 0.91
28 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (26 bp):
TGGTAATTCTACCCTACAAGGGTATT
Found at i:59014661 original size:54 final size:54
Alignment explanation
Indices: 59014589--59014777 Score: 249
Period size: 54 Copynumber: 3.5 Consensus size: 54
59014579 AGGGAAAAAT
* * *
59014589 GGTAATTTTATCCC-ACAAGGGTATCTT-GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTA-CCCTACAAGGGTAT-TTCGATAATTCTACCCTATAGGGGTATTTC
* *
59014643 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
* * *
59014697 GGTAATTCTATCCTATAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
*
59014751 GGAAATTCTACCCT-CAAGGGGTATTTC
1 GGTAATTCTACCCTACAA-GGGTATTTC
59014778 AGTAATTTCA
Statistics
Matches: 119, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
53 7 0.06
54 112 0.94
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTC
Found at i:59014784 original size:27 final size:27
Alignment explanation
Indices: 59014607--59014784 Score: 216
Period size: 27 Copynumber: 6.6 Consensus size: 27
59014597 TATCCCACAA
*
59014607 GGGTATCTT-GGTAATTCTACCCTACAG
1 GGGTAT-TTCGGTAATTCTACCCTATAG
* * *
59014634 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTATAG
*
59014661 GGGTATTTCGATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTATAG
* * *
59014688 GGGTATTTTGGTAATTCTATCCTATAA
1 GGGTATTTCGGTAATTCTACCCTATAG
**
59014715 GGGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTATAG
*
59014742 GGGTATTTCGGAAATTCTACCCTCA-AG
1 GGGTATTTCGGTAATTCTACCCT-ATAG
*
59014769 GGGTATTTCAGTAATT
1 GGGTATTTCGGTAATT
59014785 TCACAATCAA
Statistics
Matches: 129, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.02
27 126 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTATAG
Found at i:59014990 original size:27 final size:26
Alignment explanation
Indices: 59014911--59014993 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
59014901 TCGATCGGTC
* * * *
59014911 AACAGATATTATGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
59014937 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
59014964 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
59014991 AAC
1 AAC
59014994 GTTTTCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:59015224 original size:27 final size:27
Alignment explanation
Indices: 59015206--59015387 Score: 220
Period size: 27 Copynumber: 6.7 Consensus size: 27
59015196 ATTTTATCCC
*
59015206 ACAAGGGTATCTCGGTAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCT
* *
59015233 ACAGGGGTATTTCGGTATTTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCT
*
59015260 ACAAGGGTATTTCGATAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCT
* * *
59015287 ACAGGGGTATTTTGGTAATTCTATCCT
1 ACAAGGGTATTTCGGTAATTCTACCCT
* *
59015314 ATAAGGGTATTTCAGTAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCT
* * ***
59015341 ATAGGGGTATTTCAAAAATTCTACCCT
1 ACAAGGGTATTTCGGTAATTCTACCCT
* *
59015368 ACAGGGGTATTTCAGTAATT
1 ACAAGGGTATTTCGGTAATT
59015388 TCACAATCAA
Statistics
Matches: 134, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
ACAAGGGTATTTCGGTAATTCTACCCT
Found at i:59015265 original size:54 final size:54
Alignment explanation
Indices: 59015206--59015387 Score: 249
Period size: 54 Copynumber: 3.4 Consensus size: 54
59015196 ATTTTATCCC
* * *
59015206 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
* *
59015260 ACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCT
1 ACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
* * ***
59015314 ATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCT
1 ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
*
59015368 ACAGGGGTATTTCAGTAATT
1 ACAAGGGTATTTCAGTAATT
59015388 TCACAATCAA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 111 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (54 bp):
ACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCT
Found at i:59015322 original size:81 final size:81
Alignment explanation
Indices: 59015192--59015387 Score: 250
Period size: 81 Copynumber: 2.4 Consensus size: 81
59015182 AGGGCAAAAT
* * * * * *
59015192 GATAATTTTATCCC-ACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTA
1 GATAATTCTA-CCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTA
59015256 CCCTACAAGGGTATTTC
65 CCCTACAAGGGTATTTC
* * *
59015273 GATAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTAC
1 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* *
59015338 CCTATAGGGGTATTTC
66 CCTACAAGGGTATTTC
* * *
59015354 AAAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GATAATTCTACCCTACAGGGGTATTTCGGTAATT
59015388 TCACAATCAA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 3 0.03
81 96 0.97
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:59015397 original size:603 final size:603
Alignment explanation
Indices: 59014248--59015454 Score: 2290
Period size: 603 Copynumber: 2.0 Consensus size: 603
59014238 TCGGCACGAA
*
59014248 GCCCACAACAACGGCACACAGCCTTCGGTAGCGTGATCGGCACTTAGCCATCGATCGGTCAACAG
1 GCCCACAACAACGGCACACAGCCTTCAGTAGCGTGATCGGCACTTAGCCATCGATCGGTCAACAG
*
59014313 ATATTGTGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTGGCA
66 ATATTATGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTGGCA
59014378 TAGCCACCAGAACGCTTTCTCCGTACAAAATCCCAACCCATGCAACATGTCATGCATGCAGAATG
131 TAGCCACCAGAACGCTTTCTCCGTACAAAATCCCAACCCATGCAACATGTCATGCATGCAGAATG
59014443 TCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCATATCACCAACATATATTCACAA
196 TCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCATATCACCAACATATATTCACAA
59014508 TCAAATCCGTCAAACACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAATAGTCATTTAAC
261 TCAAATCCGTCAAACACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAATAGTCATTTAAC
* *
59014573 ACCCTAAGGGAAAAATGGTAATTTTATCCCACAAGGGTATCTTGGTAATTCTACCCTACAGGGGT
326 ACCCTAAGGGAAAAATGATAATTTTATCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGT
*
59014638 ATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTTGGTAAT
391 ATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAAT
**
59014703 TCTATCCTATAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGGAAATTCTACCCTCAA
456 TCTATCCTATAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCTCAA
59014768 GGGGTATTTCAGTAATTTCACAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
521 GGGGTATTTCAGTAATTTCACAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
59014833 TAATTTTGTAAACTGAGG
586 TAATTTTGTAAACTGAGG
*
59014851 GCCCGCAACAACGGCACACAGCCTTCAGTAGCGTGATCGGCACTTAGCCATCGATCGGTCAACAG
1 GCCCACAACAACGGCACACAGCCTTCAGTAGCGTGATCGGCACTTAGCCATCGATCGGTCAACAG
59014916 ATATTATGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTGGCA
66 ATATTATGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTGGCA
*
59014981 TAGCCACCAGAACGTTTTCTCCGTACAAAATCCCAACCCATGCAACATGTCATGCATGCAGAATG
131 TAGCCACCAGAACGCTTTCTCCGTACAAAATCCCAACCCATGCAACATGTCATGCATGCAGAATG
59015046 TCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCATATCACCAACATATATTCACAA
196 TCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCATATCACCAACATATATTCACAA
59015111 TCAAATCCGTCAAACACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAATAGTCATTTAAC
261 TCAAATCCGTCAAACACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAATAGTCATTTAAC
* *
59015176 ACTCTAAGGGCAAAATGATAATTTTATCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGT
326 ACCCTAAGGGAAAAATGATAATTTTATCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGT
59015241 ATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAAT
391 ATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAAT
*
59015306 TCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCT-AC
456 TCTATCCTATAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCTCA-
59015370 AGGGGTATTTCAGTAATTTCACAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
520 AGGGGTATTTCAGTAATTTCACAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
59015435 ATAATTTTGTAAACTGAGG
585 ATAATTTTGTAAACTGAGG
59015454 G
1 G
59015455 TAAACTAGTA
Statistics
Matches: 591, Mismatches: 12, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
602 1 0.00
603 590 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.27
Consensus pattern (603 bp):
GCCCACAACAACGGCACACAGCCTTCAGTAGCGTGATCGGCACTTAGCCATCGATCGGTCAACAG
ATATTATGACAGAGTCACCAAATACAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTGGCA
TAGCCACCAGAACGCTTTCTCCGTACAAAATCCCAACCCATGCAACATGTCATGCATGCAGAATG
TCATGCCCATATTTGAATCAAACAATCACAGTCAAGTCATTCATATCACCAACATATATTCACAA
TCAAATCCGTCAAACACACAGTCCAAGTCAGTCACTTGCCCACAAGGGCAAAATAGTCATTTAAC
ACCCTAAGGGAAAAATGATAATTTTATCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGT
ATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAAT
TCTATCCTATAAGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCAAAAATTCTACCCTCAA
GGGGTATTTCAGTAATTTCACAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGA
TAATTTTGTAAACTGAGG
Found at i:59015422 original size:27 final size:27
Alignment explanation
Indices: 59015392--59015776 Score: 440
Period size: 27 Copynumber: 14.3 Consensus size: 27
59015382 GTAATTTCAC
* **
59015392 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
59015419 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTATA
*
59015446 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-AGTAATTCTATA
* * *
59015473 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
59015500 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
59015527 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* **
59015554 AA-CTAAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTATA
* *
59015581 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
59015608 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTATA
* ** * *
59015635 AATCAAGGGTAAAAGGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
59015662 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
59015689 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
59015716 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTATA
*
59015743 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
59015770 AATCGAG
1 AATCGAG
59015777 AGTACTTTGG
Statistics
Matches: 309, Mismatches: 37, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
26 9 0.03
27 291 0.94
28 9 0.03
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:59015805 original size:81 final size:81
Alignment explanation
Indices: 59015392--59015776 Score: 510
Period size: 81 Copynumber: 4.8 Consensus size: 81
59015382 GTAATTTCAC
* * *
59015392 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGT
59015456 -AAACTAGTAATTCTGTA
65 AAAAC-AGTAATTCTGTA
* * * *
59015473 AATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
59015538 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* **
59015554 AA-CTAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGG
1 AATC-AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGG
*
59015617 TAAAACAGTAATTCTATA
64 TAAAACAGTAATTCTGTA
* * * *
59015635 AATCAAGGGTAAAAGGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
* *
59015700 AAACAATAATTCTATA
66 AAACAGTAATTCTGTA
* * *
59015716 AA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAG
1 AATC-AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
59015777 AGTACTTTGG
Statistics
Matches: 272, Mismatches: 25, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
80 3 0.01
81 262 0.96
82 7 0.03
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:59016730 original size:28 final size:29
Alignment explanation
Indices: 59016699--59016754 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
59016689 ATTTGAATTC
* *
59016699 GGGCCGTG-ATATTAACTGATTTGGCTTT
1 GGGCCATGAATATCAACTGATTTGGCTTT
59016727 GGGCCATGAATATCAACTGATTTGGCTT
1 GGGCCATGAATATCAACTGATTTGGCTT
59016755 CAGGTCATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (29 bp):
GGGCCATGAATATCAACTGATTTGGCTTT
Found at i:59016763 original size:29 final size:29
Alignment explanation
Indices: 59016707--59016763 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
59016697 TCGGGCCGTG
* **
59016707 ATATTAACTGATTTGGCTTTGGGCCATGA
1 ATATCAACTGATTTGGCTTCAGGCCATGA
*
59016736 ATATCAACTGATTTGGCTTCAGGTCATG
1 ATATCAACTGATTTGGCTTCAGGCCATG
59016764 TGTAACGGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (29 bp):
ATATCAACTGATTTGGCTTCAGGCCATGA
Found at i:59021687 original size:26 final size:26
Alignment explanation
Indices: 59021652--59021703 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
59021642 AATGTGAAAG
*
59021652 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59021678 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59021704 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:59021714 original size:103 final size:104
Alignment explanation
Indices: 59021574--59021940 Score: 609
Period size: 103 Copynumber: 3.6 Consensus size: 104
59021564 TGTATATAAA
** * * *
59021574 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
59021638 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
59021677 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
59021742 TGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
59021780 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
59021845 TGAAA--TAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
59021882 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
59021941 ATAACGGTTA
Statistics
Matches: 252, Mismatches: 9, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
102 111 0.44
103 140 0.56
104 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:59028807 original size:26 final size:26
Alignment explanation
Indices: 59028772--59028823 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
59028762 AATGTGAAAG
*
59028772 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59028798 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
59028824 TTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:59028907 original size:104 final size:102
Alignment explanation
Indices: 59028694--59029060 Score: 594
Period size: 103 Copynumber: 3.6 Consensus size: 102
59028684 TGTATATAAA
** * * *
59028694 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGT-ATCCACCATATCTT
*
59028759 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
59028797 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCT
59028862 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
59028901 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCTT
*
59028966 TGAAAT-AAAAAGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
59029003 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTATCCACCA
59029061 ATAACGGCTA
Statistics
Matches: 252, Mismatches: 9, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
101 8 0.03
102 78 0.31
103 93 0.37
104 72 0.29
105 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTATCCACCATATCTTT
GAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:59029018 original size:27 final size:27
Alignment explanation
Indices: 59028976--59029027 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
59028966 TGAAATAAAA
*
59028976 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
59029003 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
59029028 GATTCAGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:59030583 original size:41 final size:41
Alignment explanation
Indices: 59030491--59030651 Score: 198
Period size: 41 Copynumber: 3.9 Consensus size: 41
59030481 TTGTAAAACA
* * * * *
59030491 CAGAGCAATAGCGGCGTTTTTGTAAAAAAAGCTGCTAAAGA-
1 CAGAGCATTAGCGGCGCTTTTG-GAAAAACGCCGCTAAAGAC
* * * * *
59030532 TAGAGTATTAGCGGCGCTTTTGGCAAAACGCCACTAATGAC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
*
59030573 CAGAGCATTAGCGGCGCTTTTGTAAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
*
59030614 CAGAGCATTAGCGGCGCTTTTGGAAAAAAGCCGCTAAA
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAA
59030652 AGTCATATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 12 0.12
41 89 0.88
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (41 bp):
CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
Found at i:59030628 original size:82 final size:82
Alignment explanation
Indices: 59030491--59030650 Score: 223
Period size: 82 Copynumber: 2.0 Consensus size: 82
59030481 TTGTAAAACA
* * * * *
59030491 CAGAGCAATAGCGGCGTTTTTGTAAAAAAAGCTGCTAAAGATAGAGTATTAGCGGCGCTTTTGGC
1 CAGAGCAATAGCGGCGCTTTTGTAAAAAAAGCCGCTAAAGACAGAGCATTAGCGGCGCTTTTGGA
*
59030556 AAAACGCCACTAATGAC
66 AAAAAGCCACTAATGAC
* *
59030573 CAGAGCATTAGCGGCGCTTTTGT-AAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGG
1 CAGAGCAATAGCGGCGCTTTTGTAAAAAAAGCCGCTAAAGA-CAGAGCATTAGCGGCGCTTTTGG
*
59030637 AAAAAAGCCGCTAA
65 AAAAAAGCCACTAA
59030651 AAGTCATATA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 15 0.22
82 53 0.78
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (82 bp):
CAGAGCAATAGCGGCGCTTTTGTAAAAAAAGCCGCTAAAGACAGAGCATTAGCGGCGCTTTTGGA
AAAAAGCCACTAATGAC
Found at i:59030824 original size:7 final size:7
Alignment explanation
Indices: 59030809--59030906 Score: 52
Period size: 7 Copynumber: 13.4 Consensus size: 7
59030799 TTAATTATCA
*
59030809 TTATAGT
1 TTATGGT
59030816 TTATGGT
1 TTATGGT
*
59030823 TTATGAT
1 TTATGGT
* *
59030830 TTAAGAT
1 TTATGGT
*
59030837 ATATGGT
1 TTATGGT
*
59030844 TTAGGGT
1 TTATGGT
*
59030851 TTAAGGT
1 TTATGGT
59030858 TTATGAGT
1 TTATG-GT
59030866 TAACTATGGT
1 T---TATGGT
* *
59030876 TTAAGAT
1 TTATGGT
*
59030883 ATATGGT
1 TTATGGT
*
59030890 TTAGGGT
1 TTATGGT
*
59030897 TTAAGGT
1 TTATGGT
59030904 TTA
1 TTA
59030907 GGAGTTAACT
Statistics
Matches: 69, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
7 59 0.86
8 3 0.04
10 3 0.04
11 4 0.06
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:59030841 original size:21 final size:21
Alignment explanation
Indices: 59030817--59030901 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
59030807 CATTATAGTT
* *
59030817 TATGGTTTATGATTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
59030838 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
59030859 TATGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
59030884 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
59030902 GTTTAGGAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 31 0.60
22 3 0.06
24 3 0.06
25 15 0.29
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:59030881 original size:46 final size:46
Alignment explanation
Indices: 59030824--59030917 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
59030814 GTTTATGGTT
*
59030824 TATGATTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGATTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
*
59030870 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGATTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
59030916 TA
1 TA
59030918 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.43
Consensus pattern (46 bp):
TATGATTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:59030973 original size:7 final size:7
Alignment explanation
Indices: 59030944--59031064 Score: 68
Period size: 7 Copynumber: 17.1 Consensus size: 7
59030934 GATGAATTAT
59030944 GGGTTTA
1 GGGTTTA
*
59030951 GGGATTA
1 GGGTTTA
* *
59030958 TGATTTA
1 GGGTTTA
59030965 GGGTTTA
1 GGGTTTA
59030972 GGG-TTA
1 GGGTTTA
59030978 GGG-TTA
1 GGGTTTA
*
59030984 GAGTTTA
1 GGGTTTA
* *
59030991 AGGTGTAA
1 GGGT-TTA
* *
59030999 GGGTCTG
1 GGGTTTA
*
59031006 GGGTTAA
1 GGGTTTA
59031013 GGGTTTA
1 GGGTTTA
*
59031020 GAGTTTA
1 GGGTTTA
*
59031027 GTGTTTA
1 GGGTTTA
*
59031034 TGGG-ATA
1 -GGGTTTA
*
59031041 GGGGTTAA
1 -GGGTTTA
59031049 GAGGTTTA
1 G-GGTTTA
59031057 GGGTTTA
1 GGGTTTA
59031064 G
1 G
59031065 ATTAATTAGT
Statistics
Matches: 83, Mismatches: 26, Indels: 10
0.70 0.22 0.08
Matches are distributed among these distances:
6 11 0.13
7 58 0.70
8 14 0.17
ACGTcount: A:0.21, C:0.01, G:0.40, T:0.37
Consensus pattern (7 bp):
GGGTTTA
Found at i:59031987 original size:16 final size:17
Alignment explanation
Indices: 59031944--59031989 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
59031934 TAAACGGGGT
59031944 CGTTTTCCTTTTTGAAA
1 CGTTTTCCTTTTTGAAA
59031961 CGTTTTCCTTTTTGAAA
1 CGTTTTCCTTTTTGAAA
*
59031978 TGTTTT-CTTTTT
1 CGTTTTCCTTTTT
59031990 CTCATGCTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 6 0.21
17 22 0.79
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.61
Consensus pattern (17 bp):
CGTTTTCCTTTTTGAAA
Found at i:59032274 original size:46 final size:46
Alignment explanation
Indices: 59032218--59032307 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
59032208 TATTTATATT
*
59032218 ATTTTTAATTTA-ATAT-TTAATATCCTATATATGTAATTGTATTAAA
1 ATTTTTAATTTATATATATTAAAAT--TATATATGTAATTGTATTAAA
* *
59032264 ATTTTTAATTTATATTTATTAAAATTTTATATGTAATTGTATTA
1 ATTTTTAATTTATATATATTAAAATTATATATGTAATTGTATTA
59032308 GCATTTTTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
46 30 0.77
47 3 0.08
48 6 0.15
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (46 bp):
ATTTTTAATTTATATATATTAAAATTATATATGTAATTGTATTAAA
Found at i:59032314 original size:23 final size:23
Alignment explanation
Indices: 59032245--59032307 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
59032235 TAATATCCTA
59032245 TATATGTAATTGTATTAAAATTT
1 TATATGTAATTGTATTAAAATTT
*
59032268 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
59032291 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
59032308 GCATTTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 4 0.12
23 26 0.76
24 4 0.12
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:59036360 original size:12 final size:12
Alignment explanation
Indices: 59036343--59036375 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
59036333 TCTTGCATAT
59036343 ATGATTAATAAC
1 ATGATTAATAAC
59036355 ATGATTAATAAC
1 ATGATTAATAAC
59036367 ATGATTAAT
1 ATGATTAAT
59036376 GGTTCTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (12 bp):
ATGATTAATAAC
Found at i:59037016 original size:18 final size:17
Alignment explanation
Indices: 59036995--59037029 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
59036985 TTTTCAGGAC
59036995 TTTTTTATAATATTTTAT
1 TTTTTTATAAT-TTTTAT
*
59037013 TTTTTTTTAATTTTTAT
1 TTTTTTATAATTTTTAT
59037030 GACCTTTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTATAATTTTTAT
Found at i:59037963 original size:25 final size:25
Alignment explanation
Indices: 59037935--59038004 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
59037925 CTCTTTTAAT
*
59037935 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
59037960 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
59037985 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
59038005 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:59038696 original size:22 final size:22
Alignment explanation
Indices: 59038665--59038710 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
59038655 ACTTACACAT
59038665 AGTCCCTTATTTGAGTCTACGA
1 AGTCCCTTATTTGAGTCTACGA
*
59038687 AGTCCTTTATTTGAGTCTACGA
1 AGTCCCTTATTTGAGTCTACGA
59038709 AG
1 AG
59038711 CCCAAAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (22 bp):
AGTCCCTTATTTGAGTCTACGA
Found at i:59041243 original size:29 final size:30
Alignment explanation
Indices: 59041211--59041299 Score: 83
Period size: 29 Copynumber: 3.0 Consensus size: 30
59041201 TCCTTAACTC
59041211 AAACTTTGGAAAAATTACA-ATTTGCCCCT
1 AAACTTTGGAAAAATTACACATTTGCCCCT
* * * * *
59041240 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACATTTGCCCCT
* * * *
59041270 AAACTTT-GCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACATTTGCCCCT
59041299 A
1 A
59041300 GGCTCGGGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 38 0.70
30 16 0.30
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACATTTGCCCCT
Found at i:59041267 original size:30 final size:29
Alignment explanation
Indices: 59041231--59041299 Score: 129
Period size: 29 Copynumber: 2.3 Consensus size: 29
59041221 AAAATTACAA
59041231 TTTGCCCCTAAACTTTTGCATATTTACACT
1 TTTGCCCCTAAAC-TTTGCATATTTACACT
59041261 TTTGCCCCTAAACTTTGCATATTTACACT
1 TTTGCCCCTAAACTTTGCATATTTACACT
59041290 TTTGCCCCTA
1 TTTGCCCCTA
59041300 GGCTCGGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
29 26 0.67
30 13 0.33
ACGTcount: A:0.22, C:0.29, G:0.07, T:0.42
Consensus pattern (29 bp):
TTTGCCCCTAAACTTTGCATATTTACACT
Found at i:59042460 original size:27 final size:27
Alignment explanation
Indices: 59042398--59042475 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
59042388 GGGCATATTC
59042398 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
59042425 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
59042452 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
59042476 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:59042546 original size:27 final size:27
Alignment explanation
Indices: 59042516--59042567 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
59042506 GTAACTCTAC
59042516 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
59042543 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAGGGTATTTCTATAATTTT
59042568 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:59042609 original size:27 final size:27
Alignment explanation
Indices: 59042577--59042701 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
59042567 TTAGAAAGTC
* *
59042577 AAGGGTATTTTTGTAA-TTTAGTAAATT
1 AAGGGTATTTTGGTAATTTTA-CAAATT
*
59042604 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * * *
59042631 AAGGGTATTTCGATAATTTCACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATT
* *
59042657 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAATT
*
59042685 AGGGGTATTTTGGTAAT
1 AAGGGTATTTTGGTAAT
59042702 CTACCCTATA
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.03
27 73 0.91
28 5 0.06
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATT
Found at i:59042771 original size:27 final size:27
Alignment explanation
Indices: 59042738--59042824 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
59042728 TTCACAATTG
*
59042738 AGGGTAAAACGGTAATTTTGTAAATCA
1 AGGGTAAAACAGTAATTTTGTAAATCA
59042765 AGGGTAAAACAGT-ATTTCTGTAAATCA
1 AGGGTAAAACAGTAATTT-TGTAAATCA
* * *
59042792 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTTTGTAAATCA
59042819 AGGGTA
1 AGGGTA
59042825 CTTTGGTAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 4 0.07
27 47 0.87
28 3 0.06
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTTTGTAAATCA
Found at i:59048025 original size:46 final size:46
Alignment explanation
Indices: 59047969--59048141 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
59047959 TGGTTGAGCA
59047969 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
59048015 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
59048060 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
59048108 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
59048142 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:59048125 original size:93 final size:93
Alignment explanation
Indices: 59047966--59048136 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
59047956 GGATGGTTGA
* *
59047966 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59048031 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
59048059 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
59048124 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
59048137 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:59056631 original size:46 final size:45
Alignment explanation
Indices: 59056465--59056635 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
59056455 GGTTGAGCAT
* * *
59056465 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTGAATGC
* *
59056510 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGT-AACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTGAA-T--GC
59056555 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGTGAATGC
* *
59056603 CCGAGCTGGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
59056636 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 28 0.26
46 31 0.29
47 28 0.26
48 4 0.04
50 6 0.06
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGTGAATGC
Found at i:59066397 original size:17 final size:17
Alignment explanation
Indices: 59066375--59066408 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
59066365 TATTTCTTAC
*
59066375 TATGATTGCATATATTG
1 TATGATTGAATATATTG
*
59066392 TATGATTTAATATATTG
1 TATGATTGAATATATTG
59066409 GAAAAGTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.50
Consensus pattern (17 bp):
TATGATTGAATATATTG
Found at i:59066900 original size:49 final size:49
Alignment explanation
Indices: 59066830--59067004 Score: 224
Period size: 49 Copynumber: 3.5 Consensus size: 49
59066820 TGAGGTCACG
*
59066830 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * * * *
59066879 CGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* *
59066930 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
59066979 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
59067005 TGCATACCAG
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 65 0.62
50 2 0.02
51 37 0.36
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:59066953 original size:51 final size:49
Alignment explanation
Indices: 59066823--59067017 Score: 219
Period size: 49 Copynumber: 3.9 Consensus size: 49
59066813 ACTATTGTGA
* * *
59066823 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * * * *
59066872 GGTCGCACGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-T
* * * * *
59066923 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
59066972 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
59067018 GCTTCGGCTA
Statistics
Matches: 117, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 78 0.67
50 2 0.02
51 37 0.32
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:59066998 original size:100 final size:100
Alignment explanation
Indices: 59066825--59067012 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
59066815 TATTGTGAGG
*
59066825 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACGTGCAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCACGTGCAGTACT
*
59066890 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
* * * *
59066925 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCACGTGCAGTACT
59066990 AAGTGCAGGCTACTATGCATACC
66 AAGTGCAGGCTACTATGCATACC
59067013 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCACGTGCAGTACT
AAGTGCAGGCTACTATGCATACCCGAAAACTGTGA
Found at i:59075157 original size:46 final size:46
Alignment explanation
Indices: 59075090--59075404 Score: 288
Period size: 46 Copynumber: 6.8 Consensus size: 46
59075080 TATAACCCGC
* * * *
59075090 CCATAAGCGAATTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
59075136 CCATAAGTGAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
59075186 -C-TCA-TGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
59075229 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
*
59075279 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * ** * *
59075322 CTATAAGTGAACTCGAACTCAACTCAACGAGTTTAGATGTACGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
59075368 CTAGAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
59075405 TGCCCAAATA
Statistics
Matches: 221, Mismatches: 28, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
42 7 0.03
43 8 0.04
44 3 0.01
45 2 0.01
46 126 0.57
47 54 0.24
48 2 0.01
49 3 0.01
50 8 0.04
51 8 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:59075209 original size:47 final size:47
Alignment explanation
Indices: 59075143--59075312 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
59075133 CATCCATAAG
* *
59075143 TGAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * *
59075190 TGAACTCGGACTCAACTCAATGAGTTCGGA---C--GTTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
*
59075235 GTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
**
59075283 CAAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
59075313 CGTTCGCATC
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 28 0.27
47 54 0.53
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59075353 original size:93 final size:93
Alignment explanation
Indices: 59075102--59075354 Score: 416
Period size: 93 Copynumber: 2.7 Consensus size: 93
59075092 ATAAGCGAAT
* * *
59075102 TCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACTAG
1 TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
* **
59075167 CTCGGATGCCTAGTTACATCTCATGAAC
66 TTCGGATGCCTAGTTACATCTCACAAAC
* *
59075195 TCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAACGAG
1 TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
59075260 TTCGGATGCCTAGTTACATCTCACAAAC
66 TTCGGATGCCTAGTTACATCTCACAAAC
* *
59075288 TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCTATAAGTGAACTCGAACTCAACTCAACGAG
1 TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
59075353 TT
66 TT
59075355 TAGATGTACG
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 148 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (93 bp):
TCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
TTCGGATGCCTAGTTACATCTCACAAAC
Found at i:59078182 original size:15 final size:15
Alignment explanation
Indices: 59078134--59078202 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
59078124 TAAAGATAAC
*
59078134 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
59078148 AAGAAATCCA-AGATT
1 AAGAAACCCAGA-ATA
*
59078163 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
59078178 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
59078193 AAGAAACCCA
1 AAGAAACCCA
59078203 AGATACGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
14 9 0.20
15 34 0.77
16 1 0.02
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:59078198 original size:30 final size:30
Alignment explanation
Indices: 59078134--59078202 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
59078124 TAAAGATAAC
* *
59078134 AAGAAAACC-GAATAAAGAAATCCAAGATT
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
59078163 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
59078193 AAGAAACCCA
1 AAGAAACCCA
59078203 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:59081231 original size:46 final size:46
Alignment explanation
Indices: 59081164--59081480 Score: 338
Period size: 46 Copynumber: 6.8 Consensus size: 46
59081154 TGTACCCCGC
* * *
59081164 CCATAAGCGAACTCGGACTCAAGTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGTTCGCAT
* * * *
59081210 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCTTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* ** * *
59081256 ACATCTGACGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAG-TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* **
59081303 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* * * *
59081353 -C-TCA-CGAACTCGGACTCAAATCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
59081396 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
59081442 CCAAAAGTGAACTCGGACTCAACTCAATGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
59081481 CCCAAATATC
Statistics
Matches: 223, Mismatches: 37, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
43 4 0.02
45 5 0.02
46 142 0.64
47 64 0.29
48 3 0.01
49 1 0.00
50 4 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:59081284 original size:93 final size:93
Alignment explanation
Indices: 59081171--59081434 Score: 422
Period size: 93 Copynumber: 2.8 Consensus size: 93
59081161 CGCCCATAAG
* * *
59081171 CGAACTCGGACTCAAGTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAAATCAACGAGTTC-GGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
* * * *
59081235 AATGAGCTCGGATGCTTAGTTACATCTGA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
59081264 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
59081329 ACGAGTTCGAATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
59081357 CGAACTCGGACTCAAATCAACGAGTTCGGACGTTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAAATCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
59081422 ACGAGTTCGGATG
66 ACGAGTTCGGATG
59081435 TTCGCATCCA
Statistics
Matches: 159, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
92 2 0.01
93 157 0.99
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAAATCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59083913 original size:40 final size:40
Alignment explanation
Indices: 59083858--59083955 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
59083848 CTATCTCAGT
* *
59083858 ATCGCACACTTAGTGCCACATATAGCTGAAGCTA-TTCCA
1 ATCGCACACTAAGTGCCACATATAGCCGAAGCTATTTCCA
* * *
59083897 ATTCGCACACTAAGTGCTATATATAGCCGAAGCTATTTCGA
1 A-TCGCACACTAAGTGCCACATATAGCCGAAGCTATTTCCA
* *
59083938 AACGCACACTAAATGCCA
1 ATCGCACACTAAGTGCCA
59083956 AACATAGTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.02
40 43 0.88
41 5 0.10
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (40 bp):
ATCGCACACTAAGTGCCACATATAGCCGAAGCTATTTCCA
Found at i:59084390 original size:28 final size:29
Alignment explanation
Indices: 59084332--59084397 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
59084322 TTTTCATTTA
* *
59084332 TTTCTCAATTTAACCCCTCAATTTACACT
1 TTTCTCAAATTAACCCCTCAATTGACACT
*
59084361 TTTCTCAAATTAATCCC-CAATTGACACT
1 TTTCTCAAATTAACCCCTCAATTGACACT
*
59084389 TTTGTCAAA
1 TTTCTCAAA
59084398 AATCACTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.39
Consensus pattern (29 bp):
TTTCTCAAATTAACCCCTCAATTGACACT
Found at i:59090519 original size:17 final size:18
Alignment explanation
Indices: 59090497--59090530 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
59090487 ATTACTAAGC
59090497 AAAAATCA-CAAAAACGT
1 AAAAATCATCAAAAACGT
59090514 AAAAATCATCAAAAACG
1 AAAAATCATCAAAAACG
59090531 AAACAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.65, C:0.18, G:0.06, T:0.12
Consensus pattern (18 bp):
AAAAATCATCAAAAACGT
Found at i:59092437 original size:93 final size:93
Alignment explanation
Indices: 59092325--59092496 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
59092315 CGCCCATAAG
*
59092325 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
59092389 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
59092418 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
59092483 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
59092497 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59092491 original size:46 final size:46
Alignment explanation
Indices: 59092318--59092493 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
59092308 TGTAACCCGC
* *
59092318 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
59092364 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
59092414 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
59092457 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
59092494 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:59099395 original size:93 final size:93
Alignment explanation
Indices: 59099283--59099454 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
59099273 CGCCCATAGG
*
59099283 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
59099347 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* *
59099376 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
59099441 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
59099455 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:59099449 original size:46 final size:46
Alignment explanation
Indices: 59099284--59099451 Score: 193
Period size: 46 Copynumber: 3.6 Consensus size: 46
59099274 GCCCATAGGC
* *
59099284 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGT
* * *
59099330 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
59099377 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
*
59099423 GAACTTGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
59099452 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 53 0.51
47 29 0.28
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:59099470 original size:46 final size:44
Alignment explanation
Indices: 59099284--59099470 Score: 139
Period size: 46 Copynumber: 4.0 Consensus size: 44
59099274 GCCCATAGGC
* * * * *
59099284 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CAACCATCTAGT
*
59099330 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
59099377 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
59099423 GAACTTGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
59099469 GA
1 GA
59099471 CATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 3 0.03
46 60 0.53
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:59105597 original size:9 final size:9
Alignment explanation
Indices: 59105551--59105619 Score: 66
Period size: 9 Copynumber: 7.4 Consensus size: 9
59105541 AAGCATTAAC
59105551 AAACACATT
1 AAACACATT
*
59105560 AAAAACAAATT
1 --AAACACATT
59105571 AAACACATT
1 AAACACATT
* *
59105580 TAACTCATT
1 AAACACATT
59105589 AAACACATT
1 AAACACATT
* *
59105598 AAATACTTT
1 AAACACATT
*
59105607 AAACACATG
1 AAACACATT
59105616 AAAC
1 AAAC
59105620 TTAATTAACT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
9 39 0.83
11 8 0.17
ACGTcount: A:0.55, C:0.19, G:0.01, T:0.25
Consensus pattern (9 bp):
AAACACATT
Found at i:59108760 original size:15 final size:15
Alignment explanation
Indices: 59108740--59108769 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
59108730 ATGGATGCTA
59108740 AATTTTTTTAAATTT
1 AATTTTTTTAAATTT
*
59108755 AATTTTTTTCAATTT
1 AATTTTTTTAAATTT
59108770 TTTTTCAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (15 bp):
AATTTTTTTAAATTT
Found at i:59109774 original size:11 final size:11
Alignment explanation
Indices: 59109751--59109789 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
59109741 CACCTGCAAG
59109751 CATTAACAAACA
1 CATTAA-AAACA
59109763 CATTAAAAACA
1 CATTAAAAACA
*
59109774 CATTAAACACA
1 CATTAAAAACA
59109785 C-TTAA
1 CATTAA
59109790 CTCATTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 4 0.15
11 16 0.62
12 6 0.23
ACGTcount: A:0.56, C:0.23, G:0.00, T:0.21
Consensus pattern (11 bp):
CATTAAAAACA
Found at i:59109783 original size:9 final size:9
Alignment explanation
Indices: 59109758--59109826 Score: 68
Period size: 9 Copynumber: 7.4 Consensus size: 9
59109748 AAGCATTAAC
59109758 AAACACATT
1 AAACACATT
59109767 AAAAACACATT
1 --AAACACATT
59109778 AAACACACTT
1 AAACACA-TT
*
59109788 -AACTCATT
1 AAACACATT
59109796 AAACACATT
1 AAACACATT
* *
59109805 AAATACTTT
1 AAACACATT
*
59109814 AAACACATG
1 AAACACATT
59109823 AAAC
1 AAAC
59109827 TTAATTAACT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
8 2 0.04
9 36 0.73
10 2 0.04
11 9 0.18
ACGTcount: A:0.54, C:0.22, G:0.01, T:0.23
Consensus pattern (9 bp):
AAACACATT
Found at i:59111256 original size:41 final size:41
Alignment explanation
Indices: 59111199--59111321 Score: 246
Period size: 41 Copynumber: 3.0 Consensus size: 41
59111189 ATTCATCGAC
59111199 TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
1 TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
59111240 TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
1 TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
59111281 TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
1 TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
59111322 GAGCCAAAGT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.34
Consensus pattern (41 bp):
TTATTTCATCCTTAATATACAATCAAAACATGCCAAATCAT
Found at i:59114092 original size:19 final size:21
Alignment explanation
Indices: 59114062--59114100 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
59114052 GACTAAACTG
59114062 AGAACTTTAG-AAATTTTTAT
1 AGAACTTTAGAAAATTTTTAT
59114082 AGAAC-TTAGAAAATTTTTA
1 AGAACTTTAGAAAATTTTTA
59114101 CTATAAACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (21 bp):
AGAACTTTAGAAAATTTTTAT
Found at i:59117243 original size:30 final size:30
Alignment explanation
Indices: 59117209--59117269 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
59117199 TTCCCGAGCC
59117209 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
* * *
59117239 TAGGGGCAAAATTGTAAATTTTTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
59117269 T
1 T
59117270 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGTAAAAGTT
Found at i:59120311 original size:47 final size:47
Alignment explanation
Indices: 59120250--59120742 Score: 779
Period size: 47 Copynumber: 10.4 Consensus size: 47
59120240 CAGCCAAGAC
59120250 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120297 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
59120344 AGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTTAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120391 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120438 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120487 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120534 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120581 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
59120630 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
59120677 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
59120724 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
59120743 TCCCGAAGGG
Statistics
Matches: 416, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 322 0.77
49 94 0.23
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:59120506 original size:143 final size:143
Alignment explanation
Indices: 59120250--59120742 Score: 832
Period size: 143 Copynumber: 3.5 Consensus size: 143
59120240 CAGCCAAGAC
* *
59120250 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* * *
59120313 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
*
59120378 TGATGAATGTTAA
131 TGATGAATGTGAA
59120391 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
59120456 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
59120521 TGATGAATGTGAA
131 TGATGAATGTGAA
59120534 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
59120599 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
59120664 TGATGAATGTGAA
131 TGATGAATGTGAA
* * * * * * * *
59120677 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA-A-ATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
59120740 AAG
66 AAG
59120743 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 60 0.18
142 1 0.00
143 275 0.82
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (143 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
TGATGAATGTGAA
Found at i:59120577 original size:190 final size:189
Alignment explanation
Indices: 59120250--59120742 Score: 808
Period size: 190 Copynumber: 2.6 Consensus size: 189
59120240 CAGCCAAGAC
59120250 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
59120315 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
*
59120380 ATGAATGTTAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59120438 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
* *
59120503 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATG
59120568 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
59120630 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* * * * * * * *
59120695 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59120743 TCCCGAAGGG
Statistics
Matches: 284, Mismatches: 17, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
188 4 0.01
190 233 0.82
192 47 0.17
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (189 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:59120916 original size:37 final size:37
Alignment explanation
Indices: 59120860--59120938 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
59120850 CCGAGCTCTA
* *
59120860 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
59120897 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59120934 AAGAC
1 AAGAC
59120939 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59122664 original size:50 final size:49
Alignment explanation
Indices: 59122545--59122720 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
59122535 CTAGGTCGCA
* * *
59122545 TGTGTAGTACTAAGTTCAGGCTACT--ATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATAA-TT-GGTCACG
* ** *
59122596 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATAGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACG
* * * * *
59122646 TATGTAGTACTAAATGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACG
59122695 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
59122721 TGCGTACCAG
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
49 29 0.28
50 43 0.41
51 30 0.29
53 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACG
Found at i:59126806 original size:28 final size:28
Alignment explanation
Indices: 59126774--59126854 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
59126764 TGGGAAGTAG
59126774 TTGGGCCTAATGGGCCATATGAATG-TGA
1 TTGGGCCTAATGGGCCATATGAATGAT-A
* * * *
59126802 TTGGGCCTGATAGGCCATGTGAACGATA
1 TTGGGCCTAATGGGCCATATGAATGATA
* *
59126830 TTGGGCCTAAAGGGGCCAAATGAAT
1 TTGGGCCT-AATGGGCCATATGAAT
59126855 AAGTGTGGAT
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
28 30 0.73
29 11 0.27
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGATA
Found at i:59127183 original size:27 final size:27
Alignment explanation
Indices: 59127154--59127734 Score: 411
Period size: 27 Copynumber: 21.6 Consensus size: 27
59127144 TAATAAATAG
* *
59127154 AAATTACCGAAATACCCCTGATTGGTG
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
59127181 AAATTACCGAAATACCCCTAATTTCTG
1 AAATTACCGAAATACCCCTGATTTGTA
*
59127208 AAATTACCGAAACA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
*
59127235 AAATTACC-AAAGTACCCCCGATTTGTA
1 AAATTACCGAAA-TACCCCTGATTTGTA
* *
59127262 AAATTACCAAAATA-CCCTCGA-TTGTG
1 AAATTACCGAAATACCCCT-GATTTGTA
* *
59127288 AAATTACTGAAATA-CCCTCAATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* * *
59127315 AAATTACTGAAATACCCCCGATTTGTG
1 AAATTACCGAAATACCCCTGATTTGTA
* *
59127342 AAATTA-CTAAA-ACACCTTCGATTTGTA
1 AAATTACCGAAATAC-CCCT-GATTTGTA
*
59127369 AAATTACCGAAACA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* * * *
59127396 AAATTACTGAAACA-CCCTCAAATTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* *
59127423 AAATTACCTAAATA-CCCTCGATTTGTG
1 AAATTACCGAAATACCCCT-GATTTGTA
* * * *
59127450 AAATTATCGAAACACCCTTGATTTCTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * * * *
59127477 AAATTGCCAAAATAACTC-GATTTTTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * * *
59127503 AAATTACCGACACA-CCCTCAATTTGTT
1 AAATTACCGAAATACCCCT-GATTTGTA
* *
59127530 AAATTACTGAAATA-CCCTCAATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
*
59127557 AAATTACCGAAATA-CCATCGATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* * * *
59127584 AAATTATCGAAACACCCCCGATTTCTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
59127611 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCTGAT-TTGTA
* * *
59127638 AAATTACCAAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
59127665 AAATTACTGAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
59127692 AAATTATCGAAATACCCTTG-TACTGTA
1 AAATTACCGAAATACCCCTGAT-TTGTA
**
59127719 AAATTACTAAAATACC
1 AAATTACCGAAATACC
59127735 ATTGTAGTGT
Statistics
Matches: 446, Mismatches: 90, Indels: 36
0.78 0.16 0.06
Matches are distributed among these distances:
25 4 0.01
26 56 0.13
27 366 0.82
28 19 0.04
29 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGATTTGTA
Found at i:59127239 original size:54 final size:54
Alignment explanation
Indices: 59127154--59127709 Score: 548
Period size: 54 Copynumber: 10.3 Consensus size: 54
59127144 TAATAAATAG
* * * * *
59127154 AAATTACCGAAATACCC-CTGATTGGTGAAATTACCGAAATACCC-CTAATTTCTG
1 AAATTACCGAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTC-GATTTGTA
* *
59127208 AAATTACCGAAACACCCTCGATTTGTAAAATTACC-AAAGTACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTCGATTTGTA
* * * *
59127262 AAATTACCAAAATACCCTCGA-TTGTGAAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * ** * *
59127315 AAATTACTGAAATACCCCCGATTTGTGAAATTACTAAAACACCTTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * *
59127369 AAATTACCGAAACACCCTCGATTTGTAAAATTACTGAAACACCCTCAAATTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * *
59127423 AAATTACCTAAATACCCTCGATTTGTGAAATTATCGAAACACCCTTGATTTCTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * * * *
59127477 AAATTGCCAAAATA-ACTCGATTTTTAAAATTACCGACACACCCTCAATTTGTT
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
59127530 AAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAATACCATCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * * *
59127584 AAATTATCGAAACACCCCCGATTTCTAAAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGAT-TTGTA
* * * * * *
59127638 AAATTACCAAAACACCCCCGATTTGTAAAATTACTGAAACACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
*
59127692 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
59127710 TGTACTGTAA
Statistics
Matches: 413, Mismatches: 81, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
53 87 0.21
54 323 0.78
55 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Done.