Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 186 of 290
Found at i:59742728 original size:11 final size:11
Alignment explanation
Indices: 59742692--59742747 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
59742682 CATGGTATGT
59742692 ATGATATGCAC
1 ATGATATGCAC
* *
59742703 ATGACATG--T
1 ATGATATGCAC
59742712 ATGATATGCAC
1 ATGATATGCAC
*
59742723 ATGATATG--T
1 ATGATATGCAC
59742732 ATGATATGCAC
1 ATGATATGCAC
59742743 ATGAT
1 ATGAT
59742748 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:59742747 original size:20 final size:20
Alignment explanation
Indices: 59742681--59742747 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
59742671 ATTTTGATAA
*
59742681 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
59742701 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
59742721 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
59742741 ACATGAT
1 ACATGAT
59742748 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:59742823 original size:24 final size:24
Alignment explanation
Indices: 59742796--59743040 Score: 285
Period size: 24 Copynumber: 10.0 Consensus size: 24
59742786 GGAGGAAGTG
*
59742796 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
59742820 CAAAAGGGCTTCTGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
* *
59742845 AAAAAAGGGCTTATGCCCCAGCTAT
1 -CAAAAGGGCTTATGCCCCAGTTAT
59742870 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
59742894 TAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
59742918 CAAAAGGGCTTATACCCTAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
* * *
59742943 AAAAAAGGGCTTATGCCCGAGTTTT
1 -CAAAAGGGCTTATGCCCCAGTTAT
59742968 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
59742992 TAAAAGGGCTTTTTCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
59743016 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
59743041 ATGATAAAGT
Statistics
Matches: 191, Mismatches: 24, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
24 137 0.72
25 15 0.08
26 39 0.20
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:59742917 original size:74 final size:72
Alignment explanation
Indices: 59742796--59743040 Score: 287
Period size: 74 Copynumber: 3.3 Consensus size: 72
59742786 GGAGGAAGTG
* * * *
59742796 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTCTGCCCCAGTTATTAAAAAAGGGCTTATGC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTTATAC
*
59742861 CCCAGCTAT
64 CCCAGTTAT
* *
59742870 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATACCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATACCC
*
59742935 TAGTTATT
66 CAGTTA-T
* * * *
59742943 AAAAAAGGGCTTATGCCCGAGTT-TTCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTTC
1 -CAAAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATAC
59743007 CCCAGTTAT
64 CCCAGTTAT
* *
59743016 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
59743041 ATGATAAAGT
Statistics
Matches: 147, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
72 29 0.20
73 12 0.08
74 106 0.72
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (72 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATACCC
CAGTTAT
Found at i:59742971 original size:98 final size:98
Alignment explanation
Indices: 59742797--59743026 Score: 361
Period size: 98 Copynumber: 2.3 Consensus size: 98
59742787 GAGGAAGTGC
* *
59742797 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTCTGCCCCAGTTATTAAAAAAGGGCTTATGCC
1 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATACCCCAGTTATTAAAAAAGGGCTTATGCC
59742862 CCAGCTATCAAAAGGGCTTATGCCCCAGTTATT
66 CCAGCTATCAAAAGGGCTTATGCCCCAGTTATT
*
59742895 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATACCCTAGTTATTAAAAAAGGGCTTATGCC
1 AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATACCCCAGTTATTAAAAAAGGGCTTATGCC
* * *
59742960 CGAGTTTTCAAAAGGGCTTATGCCCCAGTTATT
66 CCAGCTATCAAAAGGGCTTATGCCCCAGTTATT
* * * *
59742993 AAAAGGGCTTTTTCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCTAGTTATCAAAAG-GGCT
59743027 AGGCCTCCAG
Statistics
Matches: 121, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
98 117 0.97
99 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (98 bp):
AAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATACCCCAGTTATTAAAAAAGGGCTTATGCC
CCAGCTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:59750137 original size:6 final size:6
Alignment explanation
Indices: 59750119--59750206 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
59750109 AAGAAACATT
* *
59750119 ATCAGA A-CTAGA ATCAGA ATCAAA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
59750168 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
59750207 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:59750140 original size:18 final size:18
Alignment explanation
Indices: 59750128--59750206 Score: 72
Period size: 19 Copynumber: 4.3 Consensus size: 18
59750118 TATCAGAACT
59750128 AGAATCAGAATCAAAATC
1 AGAATCAGAATCAAAATC
* *
59750146 AGAATCAG-GTGACAGAATC
1 AGAATCAGAAT--CAAAATC
**
59750165 AGAATCAGAATCAGTATC
1 AGAATCAGAATCAAAATC
59750183 AGGTAA-CAGAATCAAAATC
1 A-G-AATCAGAATCAAAATC
59750202 AGAAT
1 AGAAT
59750207 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
17 3 0.06
18 16 0.33
19 27 0.55
20 3 0.06
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (18 bp):
AGAATCAGAATCAAAATC
Found at i:59750203 original size:31 final size:31
Alignment explanation
Indices: 59750128--59750206 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
59750118 TATCAGAACT
* *
59750128 AGAATCAGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
59750159 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
59750190 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
59750207 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:59750621 original size:27 final size:27
Alignment explanation
Indices: 59750591--59750730 Score: 162
Period size: 27 Copynumber: 5.2 Consensus size: 27
59750581 GGCAAAATGG
* *
59750591 TAATTTTACCTCACAAGGGTATCTCGA
1 TAATTCTACCTCACAAGGGTATTTCGA
* *
59750618 TAATTCTATCCT-ACAGGGGTATTTCGG
1 TAATTCTA-CCTCACAAGGGTATTTCGA
59750645 TAATTCTACC-CTACAAGGGTATTTC-A
1 TAATTCTACCTC-ACAAGGGTATTTCGA
59750671 GTAATTCTACC-CTACAAGGGTATTTCGA
1 -TAATTCTACCTC-ACAAGGGTATTTCGA
* *
59750699 TAATTCTACCTTACAGGGGTATTTCGA
1 TAATTCTACCTCACAAGGGTATTTCGA
59750726 TAATT
1 TAATT
59750731 TCACAAATCA
Statistics
Matches: 99, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.02
27 93 0.94
28 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCTCACAAGGGTATTTCGA
Found at i:59750648 original size:54 final size:54
Alignment explanation
Indices: 59750589--59750730 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 54
59750579 GGGGCAAAAT
* * * *
59750589 GGTAATTTTACCTCACAAGGGTATCTCGATAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCTCACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTC
59750643 GGTAATTCTACC-CTACAAGGGTATTTC-AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCTC-ACAAGGGTATTTCGA-TAATTCTACCCTACAAGGGTATTTC
* * *
59750697 GATAATTCTACCTTACAGGGGTATTTCGATAATT
1 GGTAATTCTACCTCACAAGGGTATTTCGATAATT
59750731 TCACAAATCA
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
53 2 0.03
54 74 0.96
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCTCACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTC
Found at i:59750756 original size:81 final size:81
Alignment explanation
Indices: 59750588--59750757 Score: 197
Period size: 81 Copynumber: 2.1 Consensus size: 81
59750578 AGGGGCAAAA
* *
59750588 TGGTAATTTTACCTCACAAGGGTATCTCGATAATTCTATCCTACAGGGGTATTTCGGTAATTCTA
1 TGGTAATTCTACCTCACAAGGGTATCTCGATAATTCTATCCTACAGGGGTATTTCGATAATTCTA
**
59750653 CCCTACAAGGGTATTT
66 CAATACAAGGGTATTT
** *
59750669 CAGTAATTCTACC-CTACAAGGGTATTTCGATAATTCTA-CCTTACAGGGGTATTTCGATAATT-
1 TGGTAATTCTACCTC-ACAAGGGTATCTCGATAATTCTATCC-TACAGGGGTATTTCGATAATTC
59750731 TCACAA-ATC-AGAGGTATTT
64 T-ACAATA-CAAG-GGTATTT
59750750 TGGTAATT
1 TGGTAATT
59750758 TTACAAACCA
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
80 7 0.09
81 68 0.91
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (81 bp):
TGGTAATTCTACCTCACAAGGGTATCTCGATAATTCTATCCTACAGGGGTATTTCGATAATTCTA
CAATACAAGGGTATTT
Found at i:59750770 original size:54 final size:54
Alignment explanation
Indices: 59750712--59750839 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
59750702 TTCTACCTTA
59750712 CAGGGGTATTTCGATAATTTCACAAATC-AGAGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTCGATAATTTCACAAATCGAG-GGTATTTTGGTAATTTTACAAAC
* * * *** **
59750766 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTCGATAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
*
59750820 CAAGGGTATTTC-AGTAATTT
1 CAGGGGTATTTCGA-TAATTT
59750840 TTTAAATCAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTCGATAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:59750786 original size:27 final size:27
Alignment explanation
Indices: 59750712--59750840 Score: 116
Period size: 27 Copynumber: 4.8 Consensus size: 27
59750702 TTCTACCTTA
* * * *
59750712 CAGGGGTATTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
59750739 CAGAGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*** *
59750766 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
59750793 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* **
59750820 CAAGGGTATTTCAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
59750841 TTAAATCAAG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:59750840 original size:54 final size:54
Alignment explanation
Indices: 59750735--59750881 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 54
59750725 ATAATTTCAC
** * **
59750735 AAATC-AGAGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATT
1 AAATCAAG-GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTT-TT
* *
59750790 -GATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTT
1 AAATCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTT
*** * *
59750843 AAATCAAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AAATCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTA
59750882 AAATGGTAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
53 2 0.03
54 73 0.95
55 2 0.03
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (54 bp):
AAATCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTT
Found at i:59750845 original size:27 final size:27
Alignment explanation
Indices: 59750795--59750854 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
59750785 TTATTGATCG
**
59750795 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
* *
59750822 AGGGTATTTCAGTAATTTTTTAAATCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
59750849 AGGGTA
1 AGGGTA
59750855 AAATGGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAACCA
Found at i:59750863 original size:27 final size:27
Alignment explanation
Indices: 59750833--59750919 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
59750823 GGGTATTTCA
* *
59750833 GTAATTTTTTAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
59750860 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
59750887 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
59750914 GTAATT
1 GTAATT
59750920 CTATCTTATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.38, C:0.05, G:0.23, T:0.34
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATG
Found at i:59750964 original size:26 final size:27
Alignment explanation
Indices: 59750935--59750997 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
59750925 TTATTTCAGC
59750935 AATTTTACAAATC-GAGG-AATTTGGG
1 AATTTTACAAATCGGAGGTAATTTGGG
* * *
59750960 TAATTTTATAAATCGGGGGTACTTTGGG
1 -AATTTTACAAATCGGAGGTAATTTGGG
59750988 AATTTTACAA
1 AATTTTACAA
59750998 GTCAAGGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 12 0.39
27 12 0.39
28 7 0.23
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (27 bp):
AATTTTACAAATCGGAGGTAATTTGGG
Found at i:59752972 original size:6 final size:6
Alignment explanation
Indices: 59752954--59753035 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
59752944 AAGAAACATT
* *
59752954 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
59753003 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
59753036 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:59752996 original size:25 final size:25
Alignment explanation
Indices: 59752963--59753032 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
59752953 TATCAGAACT
59752963 AGAATCAGAATCAGAATCAGGTGA-C
1 AGAATCAGAATCAGAATCAGGT-ATC
*
59752988 AGAATCAGAATCAAAATCA-GTATC
1 AGAATCAGAATCAGAATCAGGTATC
59753012 AGGTAA-CAGAATCAGAATCAG
1 A-G-AATCAGAATCAGAATCAG
59753033 AATGTGAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 32 0.82
26 2 0.05
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTATC
Found at i:59752998 original size:31 final size:31
Alignment explanation
Indices: 59752963--59753035 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
59752953 TATCAGAACT
*
59752963 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
* *
59752994 AGAATCAAAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
59753025 AGAATCAGAAT
1 AGAATCAGAAT
59753036 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:59753539 original size:54 final size:54
Alignment explanation
Indices: 59753418--59753551 Score: 214
Period size: 54 Copynumber: 2.5 Consensus size: 54
59753408 AGGGCAAAAT
* * * * * *
59753418 GGTAATTTTACCCCACAAGGGTATCTTAGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
59753472 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
59753526 GGTAATTCTACCCTATAGGGGTATTT
1 GGTAATTCTACCCTATAGGGGTATTT
59753552 CGGTAATTTC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
54 74 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
Found at i:59753552 original size:27 final size:27
Alignment explanation
Indices: 59753418--59753559 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
59753408 AGGGCAAAAT
* * *
59753418 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
59753445 AGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
59753472 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
59753499 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
59753526 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
59753553 GGTAATT
1 GGTAATT
59753560 TCACAAATAA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 2 0.02
27 97 0.98
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:59753572 original size:27 final size:27
Alignment explanation
Indices: 59753517--59753614 Score: 101
Period size: 27 Copynumber: 3.6 Consensus size: 27
59753507 TACCCTACAA
**
59753517 GGGTATTTCGGTAA-TTCTAC-CCTATAG
1 GGGTATTTCGGTAATTTC-ACAAATA-AG
59753544 GGGTATTTCGGTAATTTCACAAATAAG
1 GGGTATTTCGGTAATTTCACAAATAAG
* * **
59753571 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTCGGTAATTTCACAAATAAG
*
59753598 GGGTATTTTGGTAATTT
1 GGGTATTTCGGTAATTT
59753615 TATTGATCGA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 58 0.92
28 5 0.08
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAAATAAG
Found at i:59753573 original size:81 final size:81
Alignment explanation
Indices: 59753419--59753586 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
59753409 GGGCAAAATG
* *
59753419 GTAATTTTACCCCACAAGGGTATCTTAGTAATTCTACCCTACACGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCCACAAGGGTATCTTAGTAATTCTACCCTACACGGGTATTTCGGTAATTCTACA
*
59753484 CTATAGGGGTATTTTA
66 ATATAGGGGTATTTTA
* * * *
59753500 GTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATT-TCA
1 GTAATTCTACCCCACAAGGGTATCTT-AGTAATTCTACCCTACACGGGTATTTCGGTAATTCT-A
*
59753563 CAA-ATAAGGGGTATTTTG
64 CAATAT-AGGGGTATTTTA
59753581 GTAATT
1 GTAATT
59753587 TTACAAACCA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
80 5 0.07
81 71 0.93
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGGGTATCTTAGTAATTCTACCCTACACGGGTATTTCGGTAATTCTACA
ATATAGGGGTATTTTA
Found at i:59753575 original size:54 final size:54
Alignment explanation
Indices: 59753418--59753586 Score: 173
Period size: 54 Copynumber: 3.1 Consensus size: 54
59753408 AGGGCAAAAT
* * * * ** *
59753418 GGTAATTTTACCCCACAAGGGTATCTT-AGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTAT-TTCAGTAATTCTACAATACAAGGGTATTTC
* **
59753472 GGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACAATACAAGGGTATTTC
* * *
59753526 GGTAATTCTACCCTATAGGGGTATTTCGGTAATT-TCACAAATA-AGGGGTATTTT
1 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCT-AC-AATACAAGGGTATTTC
59753580 GGTAATT
1 GGTAATT
59753587 TTACAAACCA
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
53 3 0.03
54 96 0.95
55 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACAATACAAGGGTATTTC
Found at i:59753600 original size:54 final size:54
Alignment explanation
Indices: 59753542--59753668 Score: 148
Period size: 54 Copynumber: 2.4 Consensus size: 54
59753532 TCTACCCTAT
59753542 AGGGGTATTTCGGTAATTTCACAAATA-AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTCGGTAATTTCACAAATAGA-GGGTATTTTGGTAATTTTACAAACC
* * *** * **
59753596 AGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTCGGTAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACC
* *
59753650 AAGGGTATTTCAGTAATTT
1 AGGGGTATTTCGGTAATTT
59753669 TTTAAATCGA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 60 0.98
55 1 0.02
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTCGGTAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACC
Found at i:59753602 original size:81 final size:81
Alignment explanation
Indices: 59753432--59753613 Score: 201
Period size: 81 Copynumber: 2.2 Consensus size: 81
59753422 ATTTTACCCC
* **
59753432 ACAAGGGTATCTT-AGTAATTCTACCCTACACGGGTATTTCGGTAATTCTACCCTATAGGGGTAT
1 ACAAGGGTAT-TTCGGTAATTCTACCCTACACGGGTATTTCGGTAATTCTACAATATAGGGGTAT
**
59753496 TTTAGTAATTCTACCCT
65 TTTAGTAATTCTACCAA
* *
59753513 ACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATT-TCACAA-ATAAGGGGTA
1 ACAAGGGTATTTCGGTAATTCTACCCTACACGGGTATTTCGGTAATTCT-ACAATAT-AGGGGTA
* *
59753576 TTTTGGTAATTTTA-CAA
64 TTTTAGTAATTCTACCAA
* *
59753593 ACCAGGGGTATTTTGGTAATT
1 A-CAAGGGTATTTCGGTAATT
59753614 TTATTGATCG
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
80 7 0.08
81 79 0.92
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (81 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACACGGGTATTTCGGTAATTCTACAATATAGGGGTATT
TTAGTAATTCTACCAA
Found at i:59753615 original size:27 final size:27
Alignment explanation
Indices: 59753542--59753669 Score: 123
Period size: 27 Copynumber: 4.7 Consensus size: 27
59753532 TCTACCCTAT
* * **
59753542 AGGGGTATTTCGGTAATTTCACAAATA
1 AGGGGTATTTTGGTAATTTTACAAACC
59753569 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*** *
59753596 AGGGGTATTTTGGTAATTTTATTGATC
1 AGGGGTATTTTGGTAATTTTACAAACC
**
59753623 -GAGGGTATTTTGGTAATTTTGTAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* **
59753650 AAGGGTATTTCAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
59753670 TTAAATCGAG
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.99
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:59753674 original size:27 final size:27
Alignment explanation
Indices: 59753571--59753683 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 27
59753561 CACAAATAAG
** *
59753571 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTTTAAACCAA
* * *
59753598 GGGTATTTTGGTAATTTTATT-GATCGA
1 GGGTATTTTGGTAATTTT-TTAAACCAA
*
59753625 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTTTAAACCAA
** * *
59753652 GGGTATTTCAGTAATTTTTTAAATCGA
1 GGGTATTTTGGTAATTTTTTAAACCAA
59753679 GGGTA
1 GGGTA
59753684 AAATGGTAAT
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 68 0.99
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTTTAAACCAA
Found at i:59753691 original size:54 final size:53
Alignment explanation
Indices: 59753579--59753748 Score: 162
Period size: 54 Copynumber: 3.2 Consensus size: 53
59753569 AGGGGTATTT
* * * ***
59753579 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATT-GATCGAGGGTATTT
1 TGGTAATTTTGCAAACCAAGGGTA-TTTGGTAATTTT-TTAAATCGAGGGTAAAA
* *
59753633 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTTTAAATCGAGGGTAAAA
1 TGGTAATTTTGCAAACCAAGGGTATTT-GGTAATTTTTTAAATCGAGGGTAAAA
* * * * ** *
59753687 TGGTAATTCTGGAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGCAAACCAAGGGT-ATTTGGTAATTTTTTAAATCGAGGGTAAAA
59753741 TGGTAATT
1 TGGTAATT
59753749 CTATCTTATT
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 5 0.05
54 90 0.93
55 2 0.02
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (53 bp):
TGGTAATTTTGCAAACCAAGGGTATTTGGTAATTTTTTAAATCGAGGGTAAAA
Found at i:59753692 original size:27 final size:27
Alignment explanation
Indices: 59753662--59753748 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
59753652 GGGTATTTCA
*
59753662 GTAATTTTTTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
59753689 GTAATTCTGGAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
59753716 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
59753743 GTAATT
1 GTAATT
59753749 CTATCTTATT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATG
Found at i:59753785 original size:27 final size:27
Alignment explanation
Indices: 59753755--59753841 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
59753745 AATTCTATCT
*
59753755 TATTTCGGTAATTTTACAAATCGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
59753782 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
* *
59753809 TACTTT-GGTAATTTTACAATTCAAGGG
1 TA-TTTCGGTAATTTTACAAATCGAGGG
59753836 TATTTC
1 TATTTC
59753842 AATAATTTGG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.06
27 44 0.88
28 3 0.06
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:59763955 original size:93 final size:93
Alignment explanation
Indices: 59763796--59763966 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
59763786 GCCCATAAGC
* *
59763796 GAACTCGGACTCAACTCAACGAGCTCGGGCATTAGCATCCATGAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
59763861 CGAGTTCGGATGCCTAGTTACATCTCAA
66 CGAGTTCGGATGCCTAGTTACATCTCAA
* *
59763889 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
59763954 CGAGTTCGGATGC
66 CGAGTTCGGATGC
59763967 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTAGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAA
Found at i:59763963 original size:46 final size:46
Alignment explanation
Indices: 59763788--59763963 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
59763778 TGTAACCCGC
* * * * *
59763788 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTAGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
59763834 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
59763884 -C-TCAA--GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCAT-AAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
59763927 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
59763964 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 6 0.06
44 4 0.04
45 1 0.01
46 60 0.56
47 28 0.26
48 1 0.01
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:59763982 original size:46 final size:46
Alignment explanation
Indices: 59763839--59763975 Score: 124
Period size: 47 Copynumber: 3.0 Consensus size: 46
59763829 AGCATCCATG
59763839 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTC
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCTC
* * * * *
59763887 A-AGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGCATCCA--TA
1 AGTGAACTCAGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTC
59763932 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATC
59763976 CTAGTGACAT
Statistics
Matches: 71, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
44 7 0.10
45 3 0.04
46 27 0.38
47 29 0.41
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCTC
Found at i:59771539 original size:9 final size:9
Alignment explanation
Indices: 59771525--59771831 Score: 288
Period size: 9 Copynumber: 34.6 Consensus size: 9
59771515 TGATATTTAT
*
59771525 TTATGTTAG
1 TTATGTAAG
*
59771534 TTATGTAAA
1 TTATGTAAG
*
59771543 TAATGTAAG
1 TTATGTAAG
* *
59771552 TTATGAAAA
1 TTATGTAAG
59771561 TTATGTAAG
1 TTATGTAAG
59771570 TTATGTAAG
1 TTATGTAAG
*
59771579 TTATGTAAA
1 TTATGTAAG
*
59771588 TTATGTAAA
1 TTATGTAAG
59771597 TTATGTAAG
1 TTATGTAAG
*
59771606 TTATGTAAA
1 TTATGTAAG
*
59771615 TTATGTATG
1 TTATGTAAG
59771624 TTATGTAAG
1 TTATGTAAG
*
59771633 TTATG-ACAT
1 TTATGTA-AG
*
59771642 TTATGATATG
1 TTATG-TAAG
* * *
59771652 ATATAT-AT
1 TTATGTAAG
59771660 TTATGT-A-
1 TTATGTAAG
59771667 TTATGT-A-
1 TTATGTAAG
*
59771674 TTATGTATG
1 TTATGTAAG
59771683 TTATGTAAG
1 TTATGTAAG
*
59771692 TTATGTAAA
1 TTATGTAAG
*
59771701 TTATGTAAA
1 TTATGTAAG
59771710 TTATGTAAG
1 TTATGTAAG
*
59771719 TTATGTAAA
1 TTATGTAAG
59771728 TTATGTAAG
1 TTATGTAAG
59771737 TTATGTAAG
1 TTATGTAAG
59771746 TTATGTAAG
1 TTATGTAAG
59771755 TTATGTAAG
1 TTATGTAAG
*
59771764 TTA-GGATA-
1 TTATGTA-AG
* * *
59771772 TAATTTATAT
1 TTATGTA-AG
*
59771782 TTATATAAG
1 TTATGTAAG
59771791 TTATGTAAG
1 TTATGTAAG
*
59771800 TTATGTATG
1 TTATGTAAG
*
59771809 TTATGTGAG
1 TTATGTAAG
*
59771818 GTATGTAAG
1 TTATGTAAG
59771827 TTATG
1 TTATG
59771832 ATATGATATA
Statistics
Matches: 246, Mismatches: 44, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
7 13 0.05
8 10 0.04
9 214 0.87
10 8 0.03
11 1 0.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:59771852 original size:27 final size:27
Alignment explanation
Indices: 59771795--59771859 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
59771785 TATAAGTTAT
* * *
59771795 GTAAGTTATGTATGTTATGTGAGGTAT
1 GTAAGTTATGTATGATATATGAGGTAG
*
59771822 GTAAGTTATGATATGATATAT-ATGTAG
1 GTAAGTTATG-TATGATATATGAGGTAG
*
59771849 GTAAGGTATGT
1 GTAAGTTATGT
59771860 GAGTTATGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.03
27 23 0.72
28 8 0.25
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.42
Consensus pattern (27 bp):
GTAAGTTATGTATGATATATGAGGTAG
Found at i:59772360 original size:5 final size:5
Alignment explanation
Indices: 59772350--59772393 Score: 79
Period size: 5 Copynumber: 8.6 Consensus size: 5
59772340 CTGCCCTATG
59772350 AAAAT AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAA
59772394 GAACAAACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:59772375 original size:21 final size:21
Alignment explanation
Indices: 59772350--59772393 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
59772340 CTGCCCTATG
59772350 AAAATAAAATAAAATAAAATA
1 AAAATAAAATAAAATAAAATA
59772371 AAAATAAAATAAAATAAAATA
1 AAAATAAAATAAAATAAAATA
59772392 AA
1 AA
59772394 GAACAAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (21 bp):
AAAATAAAATAAAATAAAATA
Found at i:59789900 original size:15 final size:15
Alignment explanation
Indices: 59789880--59789909 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
59789870 ACAAAGTATG
59789880 TGACTTAATTGACCA
1 TGACTTAATTGACCA
59789895 TGACTTAATTGACCA
1 TGACTTAATTGACCA
59789910 GTAATCAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (15 bp):
TGACTTAATTGACCA
Found at i:59792050 original size:17 final size:19
Alignment explanation
Indices: 59792023--59792064 Score: 70
Period size: 18 Copynumber: 2.3 Consensus size: 19
59792013 AGGCCATTTC
59792023 TGGGCTATGTGGG-CCACA
1 TGGGCTATGTGGGCCCACA
59792041 TGGG-TATGTGGGCCCACA
1 TGGGCTATGTGGGCCCACA
59792059 TGGGCT
1 TGGGCT
59792065 CGCAATATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 13 0.59
19 1 0.05
ACGTcount: A:0.14, C:0.21, G:0.40, T:0.24
Consensus pattern (19 bp):
TGGGCTATGTGGGCCCACA
Found at i:59794482 original size:10 final size:10
Alignment explanation
Indices: 59794469--59794508 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
59794459 CATATATGAA
59794469 CATATCATGG
1 CATATCATGG
*
59794479 CATATCAGGTG
1 CATATCATG-G
59794490 CATATCATGG
1 CATATCATGG
59794500 CATATCATG
1 CATATCATG
59794509 TACAAAACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (10 bp):
CATATCATGG
Found at i:59794576 original size:25 final size:25
Alignment explanation
Indices: 59794548--59794597 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
59794538 ATAACATATC
* *
59794548 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
59794573 CCTAGGGGCAAAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
59794598 TATTATAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTCA
Found at i:59799108 original size:6 final size:6
Alignment explanation
Indices: 59799098--59799152 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
59799088 AATCAGGTGA
* * *
59799098 CAGAAT TAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
59799147 CAGAAT
1 CAGAAT
59799153 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 2 0.05
6 34 0.85
7 3 0.08
8 1 0.03
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:59799112 original size:37 final size:37
Alignment explanation
Indices: 59799071--59799152 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
59799061 AAGAAACATT
* * * *
59799071 ATCAGAA-CTAGAATTAGAATCAGGTGACAGAATTAGA
1 ATCAGAATC-AGAATCAGAATCAGGTAACAGAATCAAA
*
59799108 ATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAA
59799145 ATCAGAAT
1 ATCAGAAT
59799153 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (37 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAA
Found at i:59799319 original size:27 final size:26
Alignment explanation
Indices: 59799271--59799330 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
59799261 GCGAGGCTGC
*
59799271 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
59799298 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
59799324 CAGATAT
1 CAGATAT
59799331 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:59799343 original size:33 final size:32
Alignment explanation
Indices: 59799292--59799355 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
59799282 ACAAAGTCAC
* *
59799292 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
59799324 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
59799356 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:59799659 original size:54 final size:54
Alignment explanation
Indices: 59799591--59799803 Score: 219
Period size: 54 Copynumber: 4.1 Consensus size: 54
59799581 AACACCATAG
** *
59799591 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAC-AGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCAA
* * * *
59799645 GGGTAAAACAGTAATTTTATAAGTCGAGAGT---A--A-AA-T-GGTAAATTAA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
* *
59799691 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
* * * * * *
59799745 AGGTAAAACGGTAATTTTGTAAATCGAAGGTAAAACGATAATTCTATAAATCAG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
59799799 GGGTA
1 GGGTA
59799804 CTTTGGTAAT
Statistics
Matches: 131, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
46 34 0.26
47 1 0.01
48 2 0.02
49 1 0.01
50 1 0.01
51 2 0.02
52 2 0.02
53 1 0.01
54 87 0.66
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.29
Consensus pattern (54 bp):
GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
Found at i:59799677 original size:46 final size:45
Alignment explanation
Indices: 59799636--59799724 Score: 115
Period size: 46 Copynumber: 2.0 Consensus size: 45
59799626 CAGTAATTCT
* *
59799636 GTAAATCGAGGGTAAAACAGTAATTTTATAAGTCGAGAGTAAAATG
1 GTAAATCAAGGGTAAAACAGTAATTTTATAAATCGAGAGT-AAATG
* * * *
59799682 GTAAATTAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAA
1 GTAAATCAAGGGTAAAACAGTAATTTTATAAATCGAGAGTAAA
59799725 ACGATAATTC
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 3 0.08
46 34 0.92
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.28
Consensus pattern (45 bp):
GTAAATCAAGGGTAAAACAGTAATTTTATAAATCGAGAGTAAATG
Found at i:59799685 original size:27 final size:27
Alignment explanation
Indices: 59799591--59799679 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
59799581 AACACCATAG
**
59799591 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGA
* *
59799618 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGA
*
59799645 GGGTAAAACAGTAATTTTATAAGTCGA
1 GGGTAAAACAGTAATTTTATAAATCGA
*
59799672 GAGTAAAA
1 GGGTAAAA
59799680 TGGTAAATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTATAAATCGA
Found at i:59799712 original size:27 final size:26
Alignment explanation
Indices: 59799682--59799803 Score: 102
Period size: 27 Copynumber: 4.5 Consensus size: 26
59799672 GAGTAAAATG
*
59799682 GTAAATTAAGGGTAAAATAGTAATTTT
1 GTAAATCAAGGGTAAAA-AGTAATTTT
* * *
59799709 GTAAATCGAGGGTAAAACGATAATTCT
1 GTAAATCAAGGGTAAAAAG-TAATTTT
* *
59799736 GTAAATCAAAGGTAAAACGGTAATTTT
1 GTAAATCAAGGGTAAAA-AGTAATTTT
* *
59799763 GTAAATCGAA-GGTAAAACGATAATTCT
1 GTAAATC-AAGGGTAAAAAG-TAATTTT
* *
59799790 ATAAATCAGGGGTA
1 GTAAATCAAGGGTA
59799804 CTTTGGTAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
26 3 0.04
27 72 0.92
28 3 0.04
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.29
Consensus pattern (26 bp):
GTAAATCAAGGGTAAAAAGTAATTTT
Found at i:59799751 original size:73 final size:73
Alignment explanation
Indices: 59799617--59799758 Score: 189
Period size: 73 Copynumber: 1.9 Consensus size: 73
59799607 TTATAAATCG
* * * *
59799617 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTATAAGTCGAGAGTAAAATG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGAGTAAAACG
59799682 GTAAATTA
66 GTAAATTA
* * *
59799690 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAA-AGGTAAAA
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTATAAATCAAGA-GTAAAA
59799753 CGGTAA
64 CGGTAA
59799759 TTTTGTAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
72 2 0.03
73 58 0.97
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (73 bp):
AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGAGTAAAACG
GTAAATTA
Found at i:59799778 original size:100 final size:100
Alignment explanation
Indices: 59799591--59799779 Score: 283
Period size: 100 Copynumber: 1.9 Consensus size: 100
59799581 AACACCATAG
* * *
59799591 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAAGGTAAAACAG
*
59799656 TAATTTTATAAGTCGAGAGTAAAATGGTAAATTAA
66 TAATTTTATAAATCGAGAGTAAAATGGTAAATTAA
* *
59799691 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAAAGGTAAAACG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCAAAGGTAAAACA
*
59799755 GTAATTTTGTAAATCGA-AGGTAAAA
65 GTAATTTTATAAATCGAGA-GTAAAA
59799780 CGATAATTCT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
99 2 0.03
100 78 0.98
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.29
Consensus pattern (100 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAAGGTAAAACAG
TAATTTTATAAATCGAGAGTAAAATGGTAAATTAA
Found at i:59799829 original size:27 final size:27
Alignment explanation
Indices: 59799809--59799874 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
59799799 GGGTACTTTG
59799809 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* *
59799836 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
*
59799863 GTAATTTCACAA
1 GTAATTTTACAA
59799875 AATCAGGGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTCA
Found at i:59799882 original size:27 final size:27
Alignment explanation
Indices: 59799809--59799897 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
59799799 GGGTACTTTG
* *
59799809 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTCACAAATCGAGGGTATTTCA
* * **
59799836 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTCACAAATCGAGGGTATTTCA
**
59799863 GTAATTTCACAAAATC-AGGGGTATTTTG
1 GTAATTTCAC-AAATCGA-GGGTATTTCA
59799891 GTAATTT
1 GTAATTT
59799898 TAAGAACTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
27 34 0.65
28 18 0.35
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GTAATTTCACAAATCGAGGGTATTTCA
Found at i:59799896 original size:55 final size:54
Alignment explanation
Indices: 59799853--59800007 Score: 154
Period size: 54 Copynumber: 2.9 Consensus size: 54
59799843 TACAGGTCGA
* * *
59799853 GGGTATTTCA-GTAATTTCACAAAATCAGGGGTATTTTGGTAATTTTAAGAACTAG
1 GGGTATTT-AGGTAATTT-ACAAAACCAAGGGTATTTTGGTAATTTTAAGAACGAG
* * * *
59799908 GGGTATTTAGGTAATTTTCTAAACCAAGGGTATTTTGGTAATTTTGCA-AACCAG
1 GGGTATTTAGGTAATTTACAAAACCAAGGGTATTTTGGTAATTTT-AAGAACGAG
* * * *
59799962 GGGTATTTTGGTGATTTTA-TAAACCAAGGGTATTTTAGTAATTTTA
1 GGGTATTTAGGT-AATTTACAAAACCAAGGGTATTTTGGTAATTTTA
59800008 CAAACTAGGG
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
54 66 0.77
55 20 0.23
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGTATTTAGGTAATTTACAAAACCAAGGGTATTTTGGTAATTTTAAGAACGAG
Found at i:59799920 original size:27 final size:26
Alignment explanation
Indices: 59799873--59800031 Score: 167
Period size: 27 Copynumber: 6.0 Consensus size: 26
59799863 GTAATTTCAC
*
59799873 AAAATCAGGGGTATTTTGGTAATTTT
1 AAAACCAGGGGTATTTTGGTAATTTT
* *
59799899 AAGAACTAGGGGTATTTAGGTAATTTT
1 AA-AACCAGGGGTATTTTGGTAATTTT
* *
59799926 CTAAACCAAGGGTATTTTGGTAATTTT
1 -AAAACCAGGGGTATTTTGGTAATTTT
* *
59799953 GCAAACCAGGGGTATTTTGGTGATTTT
1 -AAAACCAGGGGTATTTTGGTAATTTT
* *
59799980 ATAAACCAAGGGTATTTTAGTAATTTT
1 A-AAACCAGGGGTATTTTGGTAATTTT
* *
59800007 ACAAACTA-GGGTATTTTCGTAATTT
1 A-AAACCAGGGGTATTTTGGTAATTT
59800032 GGTAAACTAA
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
26 18 0.16
27 93 0.83
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
AAAACCAGGGGTATTTTGGTAATTTT
Found at i:59799923 original size:82 final size:79
Alignment explanation
Indices: 59799792--59800031 Score: 216
Period size: 82 Copynumber: 3.0 Consensus size: 79
59799782 ATAATTCTAT
* * * * * *** *
59799792 AAATCAGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGT
1 AAATCAGGGGTATTTTGGTAATTTTAAAACTAG-GGGTATTT-AGTAATTTTACAAACCAAGGGT
59799857 ATTTCAGTAATTTCAC
64 ATTTCAGTAATTTCAC
59799873 AAAATCAGGGGTATTTTGGTAATTTTAAGAACTAGGGGTATTTAGGTAATTTT-CTAAACCAAGG
1 -AAATCAGGGGTATTTTGGTAATTTTAA-AACTAGGGGTATTTA-GTAATTTTAC-AAACCAAGG
** **
59799937 GTATTTTGGTAATTTTGC
62 GTATTTCAGTAATTTCAC
* * * * *
59799955 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA-CTAGGGT
1 AAATCAGGGGTATTTTGGTAATTTTA-AAACTAGGGGTA-TTTAGTAATTTTACAAACCAAGGGT
59800019 ATTTTC-GTAATTT
64 A-TTTCAGTAATTT
59800032 GGTAAACTAA
Statistics
Matches: 132, Mismatches: 19, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
80 14 0.11
81 49 0.37
82 65 0.49
83 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (79 bp):
AAATCAGGGGTATTTTGGTAATTTTAAAACTAGGGGTATTTAGTAATTTTACAAACCAAGGGTAT
TTCAGTAATTTCAC
Found at i:59799964 original size:54 final size:53
Alignment explanation
Indices: 59799881--59800031 Score: 205
Period size: 54 Copynumber: 2.8 Consensus size: 53
59799871 ACAAAATCAG
* * *
59799881 GGGTATTTTGGTAATTTTAAGAACTAGGGGTATTTAGGTAATTTTCTAAACCAA
1 GGGTATTTTGGTAATTTTCA-AACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
59799935 GGGTATTTTGGTAATTTTGCAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTT-CAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
59799989 GGGTATTTTAGTAATTTTACAAACTA-GGGTATTTTCGTAATTT
1 GGGTATTTTGGTAATTTT-CAAACTAGGGGTATTTTGGTAATTT
59800032 GGTAAACTAA
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 15 0.17
54 70 0.81
55 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTCAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:59800003 original size:81 final size:80
Alignment explanation
Indices: 59799852--59800031 Score: 206
Period size: 81 Copynumber: 2.2 Consensus size: 80
59799842 TTACAGGTCG
** * * *
59799852 AGGGTA-TTTCAGTAATTTCACAAAATCAGGGGTATTTTGGTAATTTTAAGAACTAGGGGTATTT
1 AGGGTATTTTC-GTAATTTTGC-AAACCAGGGGTATTTTGGTAATTTTAAGAACCAAGGGTATTT
59799916 AGGTAATTTT-CTAAACCA
64 AGGTAATTTTAC-AAA-CA
* *
59799934 AGGGTATTTTGGTAATTTTGCAAACCAGGGGTATTTTGGTGATTTTATA-AACCAAGGGTATTTT
1 AGGGTATTTTCGTAATTTTGCAAACCAGGGGTATTTTGGTAATTTTA-AGAACCAAGGGTA-TTT
*
59799998 A-GTAATTTTACAAACT
64 AGGTAATTTTACAAACA
59800014 AGGGTATTTTCGTAATTT
1 AGGGTATTTTCGTAATTT
59800032 GGTAAACTAA
Statistics
Matches: 85, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
80 18 0.21
81 44 0.52
82 20 0.24
83 3 0.04
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (80 bp):
AGGGTATTTTCGTAATTTTGCAAACCAGGGGTATTTTGGTAATTTTAAGAACCAAGGGTATTTAG
GTAATTTTACAAACA
Found at i:59802015 original size:6 final size:6
Alignment explanation
Indices: 59802006--59802060 Score: 67
Period size: 6 Copynumber: 9.0 Consensus size: 6
59801996 AATCAGGTGA
* *
59802006 CAGAAT CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT
59802055 CAGAAT
1 CAGAAT
59802061 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
5 2 0.05
6 36 0.86
7 3 0.07
8 1 0.02
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
CAGAAT
Found at i:59802020 original size:37 final size:37
Alignment explanation
Indices: 59801979--59802060 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
59801969 AAGAAACATT
* * *
59801979 ATCAGAA-CTAGAATTAGAATCAGGTGACAGAATCAGA
1 ATCAGAATC-AGAATCAGAATCAGGTAACAGAATCAAA
*
59802016 ATCAGAATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAA
59802053 ATCAGAAT
1 ATCAGAAT
59802061 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 39 0.98
38 1 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (37 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAA
Found at i:59802227 original size:27 final size:26
Alignment explanation
Indices: 59802179--59802259 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
59802169 GCGAGGCTGC
*
59802179 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
59802206 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
* *
59802232 CATATATATATGTGGCAAAGCCACCAGA
1 C--AGATAT-TGTGACAAAGCCACCAGA
59802260 TTGCAGCGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 21 0.48
28 5 0.11
29 16 0.36
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:59802524 original size:27 final size:27
Alignment explanation
Indices: 59802494--59802588 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
59802484 AACACCATAG
*
59802494 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
59802521 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
* *
59802548 GGGTAAAACAGTAATTTTATAAGTCGA
1 GGGTAAAACGGTAATTTTATAAATCGA
*
59802575 GGGTAAAATGGTAA
1 GGGTAAAACGGTAA
59802589 ATTAAGGGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.40, C:0.06, G:0.25, T:0.28
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTATAAATCGA
Found at i:59802562 original size:54 final size:53
Alignment explanation
Indices: 59802494--59802703 Score: 227
Period size: 54 Copynumber: 4.1 Consensus size: 53
59802484 AACACCATAG
** *
59802494 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATC-A
* * * *
59802548 GGGTAAAACAGTAATTTTATAAGTCGAGGGTAAAATGGTAA--AT-T--A--A
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCA
* *
59802594 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATC-A
* * * * *
59802648 AGGTAAAACGGTAATTTTGTAAATCGAAGGTAAAACGATAATTCTATAAATCA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCA
59802701 GGG
1 GGG
59802704 GTACTTTGGT
Statistics
Matches: 131, Mismatches: 17, Indels: 17
0.79 0.10 0.10
Matches are distributed among these distances:
46 37 0.28
48 1 0.01
49 2 0.02
51 2 0.02
52 1 0.01
53 3 0.02
54 85 0.65
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (53 bp):
GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCA
Found at i:59802580 original size:46 final size:45
Alignment explanation
Indices: 59802539--59802627 Score: 124
Period size: 46 Copynumber: 2.0 Consensus size: 45
59802529 CGGTAATTCT
* *
59802539 GTAAATCGAGGGTAAAACAGTAATTTTATAAGTCGAGGGTAAAATG
1 GTAAATCAAGGGTAAAACAGTAATTTTATAAATCGAGGGT-AAATG
* * *
59802585 GTAAATTAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAA
1 GTAAATCAAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAA
59802628 ACGATAATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
45 3 0.08
46 35 0.92
ACGTcount: A:0.43, C:0.04, G:0.25, T:0.28
Consensus pattern (45 bp):
GTAAATCAAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAATG
Found at i:59802615 original size:27 final size:26
Alignment explanation
Indices: 59802585--59802706 Score: 102
Period size: 27 Copynumber: 4.5 Consensus size: 26
59802575 GGGTAAAATG
*
59802585 GTAAATTAAGGGTAAAATAGTAATTTT
1 GTAAATCAAGGGTAAAA-AGTAATTTT
* * *
59802612 GTAAATCGAGGGTAAAACGATAATTCT
1 GTAAATCAAGGGTAAAAAG-TAATTTT
* *
59802639 GTAAATCAAAGGTAAAACGGTAATTTT
1 GTAAATCAAGGGTAAAA-AGTAATTTT
* *
59802666 GTAAATCGAA-GGTAAAACGATAATTCT
1 GTAAATC-AAGGGTAAAAAG-TAATTTT
* *
59802693 ATAAATCAGGGGTA
1 GTAAATCAAGGGTA
59802707 CTTTGGTAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
26 3 0.04
27 72 0.92
28 3 0.04
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.29
Consensus pattern (26 bp):
GTAAATCAAGGGTAAAAAGTAATTTT
Found at i:59802653 original size:73 final size:73
Alignment explanation
Indices: 59802520--59802661 Score: 187
Period size: 73 Copynumber: 1.9 Consensus size: 73
59802510 TTATAAATCG
* * * * * *
59802520 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTATAAGTCGAGGGTAAAATG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAAGGTAAAACG
59802585 GTAAATTA
66 GTAAATTA
* * *
59802593 AGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAAC-GATAATTCTGTAAATCAAAGGTAAAAC
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTATAAATCAAAGGTAAAAC
59802657 GGTAA
65 GGTAA
59802662 TTTTGTAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
72 1 0.02
73 58 0.98
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.27
Consensus pattern (73 bp):
AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAAGGTAAAACG
GTAAATTA
Found at i:59802680 original size:100 final size:100
Alignment explanation
Indices: 59802494--59802682 Score: 297
Period size: 100 Copynumber: 1.9 Consensus size: 100
59802484 AACACCATAG
* * * *
59802494 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAAGGTAAAACAG
* *
59802559 TAATTTTATAAGTCGAGGGTAAAATGGTAAATTAA
66 TAATTTTATAAATCGAAGGTAAAATGGTAAATTAA
* *
59802594 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCAAAGGTAAAACGG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAAGGTAAAACAG
*
59802659 TAATTTTGTAAATCGAAGGTAAAA
66 TAATTTTATAAATCGAAGGTAAAA
59802683 CGATAATTCT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (100 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCAAAGGTAAAACAG
TAATTTTATAAATCGAAGGTAAAATGGTAAATTAA
Found at i:59802716 original size:27 final size:27
Alignment explanation
Indices: 59802686--59802932 Score: 202
Period size: 27 Copynumber: 9.2 Consensus size: 27
59802676 GGTAAAACGA
* * *
59802686 TAATTCTATAAATCAGGGGTACTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
* ***
59802713 TAATTTTACAAGTC-GAGGGTATTTCAA
1 TAATTTTACAAATCAG-GGGTATTTTGG
** **
59802740 TAA-TTTACAGGTC-GAGGGTATTTCAG
1 TAATTTTACAAATCAG-GGGTATTTTGG
* *
59802766 TAATTTCACAAATTAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
59802793 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
* *
59802820 TAATTTT-CTAAACCAAGGGTATTTTGG
1 TAATTTTAC-AAATCAGGGGTATTTTGG
*
59802847 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
* * * * *
59802874 TGATTTTATAAACCACGGGTATTTTAG
1 TAATTTTACAAATCAGGGGTATTTTGG
*
59802901 TAATTTTACAAA-CTA-GGGTATTTTCG
1 TAATTTTACAAATC-AGGGGTATTTTGG
59802927 TAATTT
1 TAATTT
59802933 GGTAAACTAA
Statistics
Matches: 186, Mismatches: 26, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
26 43 0.23
27 140 0.75
28 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTGG
Found at i:59802753 original size:26 final size:26
Alignment explanation
Indices: 59802717--59802776 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
59802707 CTTTGGTAAT
59802717 TTTACAAGTCGAGGGTATTTCAATAA
1 TTTACAAGTCGAGGGTATTTCAATAA
* *
59802743 TTTACAGGTCGAGGGTATTTCAGTAA
1 TTTACAAGTCGAGGGTATTTCAATAA
59802769 TTTCACAA
1 TTT-ACAA
59802777 ATTAGGGGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 27 0.90
27 3 0.10
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (26 bp):
TTTACAAGTCGAGGGTATTTCAATAA
Found at i:59802824 original size:54 final size:54
Alignment explanation
Indices: 59802755--59802932 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 54
59802745 TACAGGTCGA
** * ** *
59802755 GGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTCATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
*
59802809 GGGTATTTTGGTAATTTTC-TAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAA-TTTCATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* * * *
59802863 GGGTATTTTGGTGATTTTATAAACCACGGGTATTTTAGTAATTTTACAAACTA-
1 GGGTATTTTGGTAATTTCATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
*
59802916 GGGTATTTTCGTAATTT
1 GGGTATTTTGGTAATTT
59802933 GGTAAACTAA
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
53 18 0.17
54 86 0.80
55 4 0.04
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTCATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:59802869 original size:81 final size:80
Alignment explanation
Indices: 59802699--59802932 Score: 231
Period size: 81 Copynumber: 2.9 Consensus size: 80
59802689 TTCTATAAAT
* * * * * ** *
59802699 CAGGGGTACTTTGGTAATTTTACAAGTCGA-GGGTATTTCAATAA-TTTACAGGTCGAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAA-ACCACGGGTATTTTAGTAATTTTACA-AACAAGGGTATT
* *
59802762 TCAGTAATTTCACAAAT
64 TTAGTAATTTCACAAAC
* * * *
59802779 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT-CTAAACCAAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACCACGGGTATTTTAGTAATTTTAC-AAA-CAAGGGTATT
* *
59802843 TTGGTAATTTTACAAAC
64 TTAGTAATTTCACAAAC
* * *
59802860 CAGGGGTATTTTGGTGATTTTATAAACCACGGGTATTTTAGTAATTTTACAAACTAGGGTATTTT
1 CAGGGGTATTTTGGTAATTTTACAAACCACGGGTATTTTAGTAATTTTACAAACAAGGGTATTTT
*
59802925 CGTAATTT
66 AGTAATTT
59802933 GGTAAACTAA
Statistics
Matches: 127, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 53 0.42
81 71 0.56
82 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAACCACGGGTATTTTAGTAATTTTACAAACAAGGGTATTTT
AGTAATTTCACAAAC
Found at i:59808003 original size:27 final size:27
Alignment explanation
Indices: 59807973--59808150 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
59807963 ATATTGAGCC
* *
59807973 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
59808000 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
59808027 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
59808055 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
59808082 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
59808109 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
59808136 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59808151 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:59808112 original size:82 final size:81
Alignment explanation
Indices: 59807994--59808149 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
59807984 TGCTATATAA
* * *
59807994 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
59808059 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
59808076 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
59808140 CACTTAGTGC
65 CACTTAGTGC
59808150 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 19 0.29
82 46 0.71
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:59816111 original size:27 final size:27
Alignment explanation
Indices: 59816081--59816258 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
59816071 ATATTGAGCC
* *
59816081 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
59816108 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
59816135 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* ** *
59816163 CGCACACTTAGTGCCACATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
59816190 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
59816217 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
59816244 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
59816259 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:59816220 original size:82 final size:81
Alignment explanation
Indices: 59816102--59816257 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
59816092 TGCTATATAA
* * * *
59816102 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCACA
59816167 CACTTAGTGCCACATGG
65 CACTTAGTGCCACATGG
* * ** *
59816184 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCACA
59816248 CACTTAGTGC
65 CACTTAGTGC
59816258 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 18 0.28
82 46 0.72
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCACAC
ACTTAGTGCCACATGG
Found at i:59825672 original size:79 final size:80
Alignment explanation
Indices: 59825495--59825678 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
59825485 GCTACTCGTT
* *
59825495 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCG
* *
59825559 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
59825576 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGG
* *
59825638 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
59825654 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
59825679 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.02
78 27 0.31
79 46 0.52
80 10 0.11
81 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:59825678 original size:40 final size:40
Alignment explanation
Indices: 59825476--59825678 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
59825466 CGGAATTTAA
** *
59825476 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59825516 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59825556 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
59825595 CCGGA-ATTAGTATCTCGCACAAATGCCTTC--GATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
59825634 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
59825674 CCGGA
1 CCGGA
59825679 CATCATTCGA
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.01
39 52 0.38
40 82 0.60
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:59830109 original size:47 final size:47
Alignment explanation
Indices: 59830051--59830402 Score: 578
Period size: 47 Copynumber: 7.4 Consensus size: 47
59830041 CAGCCAAGAC
59830051 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59830098 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59830145 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59830194 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
59830241 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
59830290 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
59830337 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
59830384 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
59830403 TCCCGAAGGG
Statistics
Matches: 288, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 195 0.68
49 93 0.32
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:59830162 original size:96 final size:96
Alignment explanation
Indices: 59830055--59830402 Score: 592
Period size: 96 Copynumber: 3.6 Consensus size: 96
59830045 CAAGACAGTG
59830055 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59830120 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
59830151 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59830216 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
*
59830247 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
59830312 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * * * *
59830341 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
59830403 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
94 52 0.22
96 189 0.78
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:59830309 original size:143 final size:143
Alignment explanation
Indices: 59830051--59830402 Score: 577
Period size: 143 Copynumber: 2.5 Consensus size: 143
59830041 CAGCCAAGAC
59830051 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATA
*
59830115 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
66 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGAT
59830180 GTGATGAATGTGAA
130 GTGATGAATGTGAA
59830194 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGAT
59830259 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGAT
65 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGAT
59830323 GTGATGAATGTGAA
130 GTGATGAATGTGAA
* * * * * * *
59830337 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA-A-ATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGAT
59830400 AAG
65 AAG
59830403 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
141 10 0.05
142 1 0.01
143 141 0.71
145 46 0.23
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATA
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATG
TGATGAATGTGAA
Found at i:59830577 original size:37 final size:37
Alignment explanation
Indices: 59830521--59830599 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
59830511 CTGAGCTCTA
* *
59830521 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
59830558 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
59830595 AAGAC
1 AAGAC
59830600 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:59838300 original size:33 final size:33
Alignment explanation
Indices: 59838258--59838324 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
59838248 GGACATAGCC
59838258 CGGTTATAGTAACTCGCACAAATGCCTTCGGGA
1 CGGTTATAGTAACTCGCACAAATGCCTTCGGGA
59838291 CGGTTATAGTAACTCGCACAAATGCCTTCGGGA
1 CGGTTATAGTAACTCGCACAAATGCCTTCGGGA
59838324 C
1 C
59838325 TTAACCCGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (33 bp):
CGGTTATAGTAACTCGCACAAATGCCTTCGGGA
Found at i:59838355 original size:40 final size:39
Alignment explanation
Indices: 59838300--59838400 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
59838290 ACGGTTATAG
*
59838300 TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAA
1 TAACTCGCACAAATGCCTTCGGG-CTTAACCCGGAATTAA
* * *
59838340 TAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAATTAG
1 TAACTCGCACAAATGCCTTCGGGCTTAACCCGGAATTAA
* *
59838379 TATCTCGCACAAAAGCCTTCGG
1 TAACTCGCACAAATGCCTTCGG
59838401 ATCTTAGTCC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 32 0.59
40 22 0.41
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.24
Consensus pattern (39 bp):
TAACTCGCACAAATGCCTTCGGGCTTAACCCGGAATTAA
Found at i:59838386 original size:39 final size:40
Alignment explanation
Indices: 59838297--59838458 Score: 152
Period size: 40 Copynumber: 4.0 Consensus size: 40
59838287 GGGACGGTTA
*
59838297 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* * *
59838337 TAATAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* * **
59838376 TAGTATCTCGCACAAAAGCCTTC-GGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAAT
* * * *
59838415 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGACAT
1 -TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA-AT
59838457 TA
1 TA
59838459 TTCGAATAAC
Statistics
Matches: 100, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.32
40 52 0.52
41 12 0.12
42 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:59838413 original size:79 final size:81
Alignment explanation
Indices: 59838297--59838458 Score: 188
Period size: 79 Copynumber: 2.0 Consensus size: 81
59838287 GGGACGGTTA
* * * *
59838297 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACCAATGCCTTCG
1 TAGTAACTCGCACAAAAGCCTTCGGGACTTAACCCGGATATAATAACTTAGCA-CAAAGCCTTCG
59838361 GG-CTTAGCCCGGA-AT
65 GGACTTAGCCCGGACAT
* ** ** *
59838376 TAGTATCTCGCACAAAAGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAAAGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCACAAAGCCTTCG
59838440 GGACTTAGCCCGGACAT
65 GGACTTAGCCCGGACAT
59838457 TA
1 TA
59838459 TTCGAATAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.04
79 47 0.68
80 15 0.22
81 4 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
TAGTAACTCGCACAAAAGCCTTCGGGACTTAACCCGGATATAATAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGACAT
Found at i:59838998 original size:38 final size:38
Alignment explanation
Indices: 59838947--59839025 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
59838937 TATTTTTGTA
59838947 TGTATATATGATATGAATAATGTGTGTTTTACTATTTT
1 TGTATATATGATATGAATAATGTGTGTTTTACTATTTT
*
59838985 TGTATGTATGATATGAATAATGTGTGTTTTACTATTTT
1 TGTATATATGATATGAATAATGTGTGTTTTACTATTTT
59839023 TGT
1 TGT
59839026 TTTGTAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.03, G:0.18, T:0.53
Consensus pattern (38 bp):
TGTATATATGATATGAATAATGTGTGTTTTACTATTTT
Found at i:59842813 original size:37 final size:37
Alignment explanation
Indices: 59842760--59842859 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
59842750 CGAATAGTCA
*
59842760 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
59842797 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
59842834 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
59842860 AGAATATATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:59843061 original size:48 final size:48
Alignment explanation
Indices: 59843003--59843436 Score: 733
Period size: 48 Copynumber: 9.0 Consensus size: 48
59842993 ATATACACAC
* * *
59843003 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
59843051 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
59843099 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
59843147 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
59843195 ATCTCATACATATTTCATATTATCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
59843243 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
59843291 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
59843339 ATCTCATACATATGTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
59843387 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
59843435 AT
1 AT
59843437 ATTTATCTTG
Statistics
Matches: 364, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 364 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:59848368 original size:20 final size:20
Alignment explanation
Indices: 59848343--59848381 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
59848333 GCTTGTATGA
59848343 GATTGCAC-TTCGATGCCTCC
1 GATTGCACATTC-ATGCCTCC
59848363 GATTGCACATTCATGCCTC
1 GATTGCACATTCATGCCTC
59848382 TATTCGCACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (20 bp):
GATTGCACATTCATGCCTCC
Found at i:59852832 original size:27 final size:27
Alignment explanation
Indices: 59852798--59852971 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
59852788 TAAATTGTAC
59852798 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
59852825 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
59852851 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
59852879 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
59852907 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
59852934 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
59852961 AGCACTGAGTG
1 AGCACTAAGTG
59852972 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:59852912 original size:82 final size:81
Alignment explanation
Indices: 59852799--59852954 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
59852789 AAATTGTACA
* *
59852799 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
59852863 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
59852880 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
59852945 TGCGAGTTGA
65 TGCGAATTGA
59852955 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:59857484 original size:27 final size:26
Alignment explanation
Indices: 59857437--59857487 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
59857427 CGAGGCTACA
*
59857437 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
59857463 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
59857488 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:59861083 original size:27 final size:27
Alignment explanation
Indices: 59861050--59861253 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
59861040 TAAATTGTAC
* *
59861050 AGCACTAAGTGTGCGATTTGACTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
59861077 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * **
59861104 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
59861130 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
59861158 GGCACTAAGTGTGCGAGATTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
59861186 AGCACTAAGTGTGCG-ATTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
59861212 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
59861239 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
59861254 GACTCAATAT
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 25 0.16
27 105 0.69
28 23 0.15
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:59873559 original size:96 final size:97
Alignment explanation
Indices: 59873327--59873586 Score: 436
Period size: 96 Copynumber: 2.7 Consensus size: 97
59873317 CTCCACAGAA
*
59873327 ATTGCAGCGAGGCTGCCAA-ATATTGTGACGAAGTCACCAGATACAAATATTGCGGCTAGGCCAC
1 ATTGCAGCGAGGCT-ACAAGATATTGTGACGAAGTCACCAGATACAAATATTGCGGCTAGGCCAC
59873391 CAGAACAGATATATATATATGGCAAAGCCACCAG
65 CAGAACAGA-ATATATATATGGCAAAGCCACCAG
59873425 ATTGCAGCGAGGCTACAAGATATTGTGACGAAGTCACCAGATACAAATATTGCGGCTAGGCCACC
1 ATTGCAGCGAGGCTACAAGATATTGTGACGAAGTCACCAGATACAAATATTGCGGCTAGGCCACC
59873490 AGAACAG-ATATATATATGGCAAAGCCACCAG
66 AGAACAGAATATATATATGGCAAAGCCACCAG
* * *
59873521 ATTGCAGCGAGGCTACAAGATATTGTGACGAAGTCACCAGA-ACAGATATATGTGGCGAGGCCAC
1 ATTGCAGCGAGGCTACAAGATATTGTGACGAAGTCACCAGATACAAATAT-TGCGGCTAGGCCAC
59873585 CA
65 CA
59873587 AATTGCAGCG
Statistics
Matches: 156, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
95 7 0.04
96 79 0.51
97 3 0.02
98 67 0.43
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (97 bp):
ATTGCAGCGAGGCTACAAGATATTGTGACGAAGTCACCAGATACAAATATTGCGGCTAGGCCACC
AGAACAGAATATATATATGGCAAAGCCACCAG
Found at i:59876108 original size:37 final size:37
Alignment explanation
Indices: 59875984--59876108 Score: 133
Period size: 37 Copynumber: 3.4 Consensus size: 37
59875974 CCAACCGAAG
* * * * *
59875984 CATGCCAGATGTTTATAAGATCTAATCCACTTGATAG
1 CATGCCAGATGCTCATAAGAGCTAATCCACCTGATAA
* * ** *
59876021 CATGCCAAATTCTTTTAAGAGCTAATCCACCCGATAA
1 CATGCCAGATGCTCATAAGAGCTAATCCACCTGATAA
** *
59876058 CACACCAGGTGCTCATAAGAGCTAATCCACCTGATAA
1 CATGCCAGATGCTCATAAGAGCTAATCCACCTGATAA
59876095 CATGCCAGATGCTC
1 CATGCCAGATGCTC
59876109 CGAAAAGCTA
Statistics
Matches: 69, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (37 bp):
CATGCCAGATGCTCATAAGAGCTAATCCACCTGATAA
Found at i:59876118 original size:37 final size:37
Alignment explanation
Indices: 59876040--59876118 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
59876030 TTCTTTTAAG
* * *
59876040 AGCTAATCCACCCGATAACACACCAGGTGCTCATAAG
1 AGCTAATCCACCCGATAACACACCAGATGCTCAGAAA
* ** *
59876077 AGCTAATCCACCTGATAACATGCCAGATGCTCCGAAA
1 AGCTAATCCACCCGATAACACACCAGATGCTCAGAAA
59876114 AGCTA
1 AGCTA
59876119 GTCTAACAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.35, C:0.30, G:0.16, T:0.18
Consensus pattern (37 bp):
AGCTAATCCACCCGATAACACACCAGATGCTCAGAAA
Found at i:59883675 original size:27 final size:28
Alignment explanation
Indices: 59883634--59883697 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
59883624 GGCATTATCT
59883634 TCATTTTAC-CATAC-AGTGGTATTACGG
1 TCATTTTACACATACAAG-GGTATTACGG
**
59883661 TCATTTTACAC-TACAAGGGTATTTTGG
1 TCATTTTACACATACAAGGGTATTACGG
*
59883688 TGATTTTACA
1 TCATTTTACA
59883698 AACCGGGGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.41
Consensus pattern (28 bp):
TCATTTTACACATACAAGGGTATTACGG
Found at i:59883958 original size:19 final size:17
Alignment explanation
Indices: 59883916--59883958 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
59883906 AATCCGTGTG
*
59883916 AGGCCCACGAGCCCATT
1 AGGCCCACCAGCCCATT
*
59883933 GGGCCCACACAGCCCATCT
1 AGGCCCAC-CAGCCCAT-T
59883952 AGGCCCA
1 AGGCCCA
59883959 ACGTGGCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 7 0.33
19 7 0.33
ACGTcount: A:0.23, C:0.44, G:0.23, T:0.09
Consensus pattern (17 bp):
AGGCCCACCAGCCCATT
Found at i:59887048 original size:46 final size:45
Alignment explanation
Indices: 59886995--59887170 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
59886985 TATTTGGGCA
59886995 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
59887041 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
59887088 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
59887134 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59887171 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:59887150 original size:93 final size:93
Alignment explanation
Indices: 59886991--59887162 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
59886981 AGGATATTTG
* *
59886991 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
59887056 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
59887084 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
59887149 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
59887163 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:59891992 original size:46 final size:46
Alignment explanation
Indices: 59891936--59892111 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
59891926 TATTTGGGCA
*
59891936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *** * * * *
59891982 TCTGAACTCGTTGATTTGAGTCCGAGTTCGAGAGATGTA-ACTAGACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ACG
* *
59892029 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
59892075 CCCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
59892112 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:59892093 original size:93 final size:93
Alignment explanation
Indices: 59891934--59892103 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
59891924 GATATTTGGG
* * *
59891934 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGATTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGATTT
59891999 GAGTCCGAGTTCGAGAGATGTAACTAGA
66 GAGTCCGAGTTCGAGAGATGTAACTAGA
* * *
59892027 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATTT
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGATTT
59892092 GAGTCCGAGTTC
66 GAGTCCGAGTTC
59892104 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (93 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGATTT
GAGTCCGAGTTCGAGAGATGTAACTAGA
Found at i:59895460 original size:23 final size:23
Alignment explanation
Indices: 59895434--59895482 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
59895424 GTGGTAACTG
59895434 ATGAAATGAAAGTAAAATTAATT
1 ATGAAATGAAAGTAAAATTAATT
59895457 ATGAAATGAAAGTAAAATTAATT
1 ATGAAATGAAAGTAAAATTAATT
59895480 ATG
1 ATG
59895483 TATTTGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (23 bp):
ATGAAATGAAAGTAAAATTAATT
Found at i:59909265 original size:93 final size:93
Alignment explanation
Indices: 59909137--59909308 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
59909127 GCCCATAAGT
* * *
59909137 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAAATCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
59909202 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
59909230 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
59909295 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
59909309 CAAATATCTA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:59909304 original size:46 final size:46
Alignment explanation
Indices: 59909129--59909304 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
59909119 TGTAACCCGC
* * *
59909129 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
59909175 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
59909221 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
59909268 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
59909305 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:59916102 original size:48 final size:47
Alignment explanation
Indices: 59916031--59916362 Score: 340
Period size: 48 Copynumber: 6.9 Consensus size: 47
59916021 TGGGTAAGAT
* *
59916031 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCACATATTGAG
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATTAAG
* * * * * *
59916079 GCCGATGCCATGTCCTAGACATGGTCCTACACTTGCTCTCTTAATAAT
1 GCCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCACATATTAAG
* * * * *
59916127 GCCGATGTCATGTTCCAAACATGGTCTTACACTGGCCCACATATTGAG
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATTAAG
* ** *
59916175 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAAT
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATTAAG
* * * * *
59916223 GCCGATGCCATGTTCCAAACACGGTCTTACACTGGCTTACATATTGAG
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATATTAAG
* * * *
59916271 GCCGATGCCATGTCCCAGAAATGGTCTTACACTAGCTCTCATAATAAT
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCACATATTAAG
* * *
59916319 GCTGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATAT
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCACATAT
59916363 ACCCCAACGT
Statistics
Matches: 227, Mismatches: 51, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
47 4 0.02
48 218 0.96
49 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCAGACATGGTCTTACACTAGCTCACATATTAAG
Found at i:59916195 original size:96 final size:96
Alignment explanation
Indices: 59916029--59916362 Score: 515
Period size: 96 Copynumber: 3.5 Consensus size: 96
59916019 AATGGGTAAG
* * * *
59916029 ATGCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCACATATTGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCC
* * * *
59916094 TAGACATGGTCCTACACTTGCTCTCTTAATA
66 CAGACATGGTCTTACACTAGCTCTCATAATA
* * * *
59916125 ATGCCGATGTCATGTTCCAAACATGGTCTTACACTGGCCCACATATTGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCC
*
59916190 CAGACATGGTCTTACACTAGCTCTCATAACA
66 CAGACATGGTCTTACACTAGCTCTCATAATA
* *
59916221 ATGCCGATGCCATGTTCCAAACACGGTCTTACACTGGCTTACATATTGAGGCCGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCC
*
59916286 CAGAAATGGTCTTACACTAGCTCTCATAATA
66 CAGACATGGTCTTACACTAGCTCTCATAATA
*
59916317 ATGCTGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATAT
1 ATGCCGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATAT
59916363 ACCCCAACGT
Statistics
Matches: 218, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 218 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (96 bp):
ATGCCGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTCATAATA
Found at i:59916295 original size:144 final size:144
Alignment explanation
Indices: 59916031--59916361 Score: 380
Period size: 144 Copynumber: 2.3 Consensus size: 144
59916021 TGGGTAAGAT
* ***
59916031 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCACATATTGAGGCCGATGCCATGTCCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATGTCCTA
* * * * * * * *
59916096 GACATGGTCCTACACTTGCTCTCTTAATAATGCCGATGTCATGTTCCAAACATGGTCTTACACTG
66 AACACGGTCCTACACTGGCTCTCATAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTA
* *
59916161 GCCCACATATTGAG
131 GCCCACATAATAAG
* *
59916175 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCC-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATG-TCCT
* * *
59916239 AAACACGGTCTTACACTGGCT-TACATATTGAGGCCGATGCCATGTCCCAGAA-ATGGTCTTACA
65 AAACACGGTCCTACACTGGCTCT-CATAATAAGGCCGATGCCATGTCCCA-AACATGGTCTTACA
* * *
59916302 CTAGCTCTCATAATAAT
128 CTAGCCCACATAATAAG
* * * *
59916319 GCTGATGCCATGTTCCAAACACGGTCTTACACTAGCTCACATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
59916362 TACCCCAACG
Statistics
Matches: 157, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
143 1 0.01
144 151 0.96
145 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCCATGTCCTA
AACACGGTCCTACACTGGCTCTCATAATAAGGCCGATGCCATGTCCCAAACATGGTCTTACACTA
GCCCACATAATAAG
Found at i:59918778 original size:40 final size:40
Alignment explanation
Indices: 59918719--59918940 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
59918709 AACCCAAGTA
* * *
59918719 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * * * *
59918758 CCTTCGAGTCTTATCCCGGATATAGTAAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
59918798 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
59918838 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
59918878 CCTTCGGGACTTAGCCCGAATATAGTCGATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
59918918 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
59918941 CATTCGAATA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 10 0.06
40 151 0.93
41 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:59926062 original size:39 final size:40
Alignment explanation
Indices: 59925989--59926208 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
59925979 AACCCAAGTA
* * *
59925989 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * * *
59926028 CCTTCGAGTCTTATCCCGGATATAGT-AATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
59926067 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
59926107 CCTTCGGGACTTAGCCCGGATATAGTCAATAG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
59926146 CCTTCGGGACTTAGCCCGAATATAGTCGATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
59926186 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
59926209 CATTCGAATA
Statistics
Matches: 161, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 78 0.48
40 83 0.52
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:59926125 original size:79 final size:80
Alignment explanation
Indices: 59925989--59926208 Score: 315
Period size: 79 Copynumber: 2.8 Consensus size: 80
59925979 AACCCAAGTA
* * * * * *
59925989 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATGCCTTCGAGTCTTATCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
59926052 GT-AATAGCACAAAAG
66 GTCAATAG-ACAAAAG
59926067 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
59926131 GTCAATAGACAAATG
66 GTCAATAGACAAAAG
* *
59926146 CCTTCGGGACTTAGCCCGAATATAGTCGA-TAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
59926209 CATTCGAATA
Statistics
Matches: 130, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
78 13 0.10
79 110 0.85
80 7 0.05
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCAATAGACAAAAG
Found at i:59933348 original size:40 final size:40
Alignment explanation
Indices: 59933274--59933535 Score: 366
Period size: 40 Copynumber: 6.6 Consensus size: 40
59933264 AACCCAAGTA
* * *
59933274 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
59933313 CCTTCGGGTCTTAGCCCGAATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
59933353 CCTCCAGGACTTAGCCCGGATATAGTCAATAACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
59933393 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
59933433 CCTTCTGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * * *
59933473 CGTTCGGGACTTAGCCTGGATATAGTCGATAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
59933513 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
59933536 CATTCGAATA
Statistics
Matches: 196, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 12 0.06
40 181 0.92
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:59950896 original size:125 final size:125
Alignment explanation
Indices: 59950739--59950988 Score: 500
Period size: 125 Copynumber: 2.0 Consensus size: 125
59950729 TATTCCATGA
59950739 ATTAAGGCTCCATGTCCAGCCACTAATAAATTTGTGGTCTATTTACTCACTAAAGACCTCTAGCT
1 ATTAAGGCTCCATGTCCAGCCACTAATAAATTTGTGGTCTATTTACTCACTAAAGACCTCTAGCT
59950804 TAATGCTTCATAGCTATTTAACACTTTCAACTAGTAAAACAAATCTTTTGCACTTTATGC
66 TAATGCTTCATAGCTATTTAACACTTTCAACTAGTAAAACAAATCTTTTGCACTTTATGC
59950864 ATTAAGGCTCCATGTCCAGCCACTAATAAATTTGTGGTCTATTTACTCACTAAAGACCTCTAGCT
1 ATTAAGGCTCCATGTCCAGCCACTAATAAATTTGTGGTCTATTTACTCACTAAAGACCTCTAGCT
59950929 TAATGCTTCATAGCTATTTAACACTTTCAACTAGTAAAACAAATCTTTTGCACTTTATGC
66 TAATGCTTCATAGCTATTTAACACTTTCAACTAGTAAAACAAATCTTTTGCACTTTATGC
59950989 GATTTAATCC
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 125 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.35
Consensus pattern (125 bp):
ATTAAGGCTCCATGTCCAGCCACTAATAAATTTGTGGTCTATTTACTCACTAAAGACCTCTAGCT
TAATGCTTCATAGCTATTTAACACTTTCAACTAGTAAAACAAATCTTTTGCACTTTATGC
Found at i:59957508 original size:48 final size:48
Alignment explanation
Indices: 59957432--59957758 Score: 347
Period size: 48 Copynumber: 6.8 Consensus size: 48
59957422 TAATATGCCA
*
59957432 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGCCG
* * ** * *
59957480 ATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGCCG
* * *
59957528 ATG-C-TGTGCACCAAACATGGTCTTACACTGGCTCACATATTAAGGCCA
1 ATGCCATGT-C-CCAGACATGGTCTTACACTAGCTCACATATTAAGGCCG
* * * * ***
59957576 ATGCCATGTCTCGGACATGGTCTTACACTAGCTCTCCTA--ACATTTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTA-AGGCCG
* * * *
59957623 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGCCG
** ** * *
59957671 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATAACAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGCCG
*
59957719 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
59957759 ACCCCAACGT
Statistics
Matches: 223, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
46 4 0.02
47 35 0.16
48 179 0.80
49 2 0.01
50 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTAAGGCCG
Found at i:59957593 original size:96 final size:95
Alignment explanation
Indices: 59957441--59957758 Score: 444
Period size: 96 Copynumber: 3.3 Consensus size: 95
59957431 AATGCCATGT
* *
59957441 CCCAGACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCTATGTCCCAGACATGGTCTTAC
1 CCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTAC
* *
59957506 ACTAGCTCTCATAACAATGCCAATGCTGTG
66 ACTAGCTCTCATAACAATGTCGATGCTGTG
* * * * *
59957536 CACCAAACATGGTCTTACACTGGCTCACATATTAAGGCCAATGCCATGTCTCGGACATGGTCTTA
1 C-CCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTA
* *
59957601 CACTAGCTCTCCTAAC-ATTTCGATGCCATGT-
65 CACTAGCTCTCATAACAATGTCGATG-C-TGTG
* *
59957632 TCCAAACATGGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTAC
1 CCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTAC
*
59957697 ACTAGCTTTCATAACAATGTCGATGCCATGT-
66 ACTAGCTCTCATAACAATGTCGATG-C-TGTG
59957728 CCCAAACATGGTCTTACACTAGCTCACATAT
1 CCCAAACATGGTCTTACACTAGCTCACATAT
59957759 ACCCCAACGT
Statistics
Matches: 198, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
95 80 0.40
96 115 0.58
97 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (95 bp):
CCCAAACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTAC
ACTAGCTCTCATAACAATGTCGATGCTGTG
Found at i:59974646 original size:30 final size:30
Alignment explanation
Indices: 59974605--59974666 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
59974595 CAAGTAGCCG
*
59974605 AAGCTAATTTAAATTGCACACTTAGTGCCA
1 AAGCTAATTTAAATCGCACACTTAGTGCCA
*
59974635 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAATTTAAATCGCACACTTAGTGCCA
59974665 AA
1 AA
59974667 ATTTCCGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (30 bp):
AAGCTAATTTAAATCGCACACTTAGTGCCA
Found at i:59978357 original size:33 final size:32
Alignment explanation
Indices: 59978310--59978371 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
59978300 CACTGCAATT
* *
59978310 TGGTGGCTTCGCCACATATATATATATCTGTCC
1 TGGTGGCCTAGCCACA-ATATATATATCTGTCC
* *
59978343 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
59978372 GTGACTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 11 0.44
33 14 0.56
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTCC
Found at i:59990950 original size:93 final size:93
Alignment explanation
Indices: 59990838--59991008 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
59990828 CCCATAAGTG
* * * *
59990838 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTAGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTAGGACTCAACTCAAC
59990903 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
* *
59990931 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTAGGACTCAACTCAAC
59990996 GAGTTCGGATGCC
66 GAGTTCGGATGCC
59991009 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTAGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Done.