Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 189 of 290
Found at i:60735208 original size:15 final size:14
Alignment explanation
Indices: 60735082--60735305 Score: 105
Period size: 14 Copynumber: 15.9 Consensus size: 14
60735072 AATATACTAA
60735082 ATATAAATAATAACT
1 ATATAAATAATAA-T
*
60735097 AAAT-AATAAGTAA-
1 ATATAAATAA-TAAT
* * *
60735110 ATAGAAAT-CTAAA
1 ATATAAATAATAAT
*
60735123 ATCTAAATAATAACT
1 ATATAAATAATAA-T
* *
60735138 AAATAGA-AATAAAT
1 ATATAAATAAT-AAT
*
60735152 ATATATATAATAAT
1 ATATAAATAATAAT
60735166 ATATATAATAATAAT
1 ATATA-AATAATAAT
60735181 ATATAAA-AATAAT
1 ATATAAATAATAAT
60735194 ATATAAATAGATAAT
1 ATATAAATA-ATAAT
*
60735209 AGAT-AATAGATAAT
1 ATATAAATA-ATAAT
60735223 ATA-ATAATAGATCGAAT
1 ATATA-AATA-AT--AAT
60735240 A-ATAAAATAAATAAT
1 ATAT-AAAT-AATAAT
*
60735255 ATAGAAAT-ATAGAT
1 ATATAAATAATA-AT
* *
60735269 TTATAAATCGA-AAT
1 ATATAAAT-AATAAT
*
60735283 ATATTAAT-ATAA-
1 ATATAAATAATAAT
60735295 ATAT-AATAATA
1 ATATAAATAATA
60735306 TAAATATTAT
Statistics
Matches: 165, Mismatches: 21, Indels: 49
0.70 0.09 0.21
Matches are distributed among these distances:
11 3 0.02
12 11 0.07
13 26 0.16
14 59 0.36
15 52 0.32
16 3 0.02
17 9 0.05
18 2 0.01
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (14 bp):
ATATAAATAATAAT
Found at i:60735250 original size:50 final size:47
Alignment explanation
Indices: 60735138--60735263 Score: 116
Period size: 50 Copynumber: 2.6 Consensus size: 47
60735128 AATAATAACT
* *
60735138 AAATAGAAATAAATATATATATA-ATAATATATATAATAATAATATATAA
1 AAATA-AAATAAATA-ATA-ATAGATAATAGATATAATAATAATAGATAA
60735187 AAATAATATATAAATAGATAATAGATAATAGATA-ATATAATAATAGATCGAA
1 AAATAA-A-ATAAATA-ATAATAGATAATAGATATA-ATAATAATAGAT--AA
*
60735239 TAATAAAATAAATAAT-ATAGA-AATA
1 AAATAAAATAAATAATAATAGATAATA
60735264 TAGATTTATA
Statistics
Matches: 67, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
47 4 0.06
48 6 0.09
49 12 0.18
50 37 0.55
51 1 0.01
52 7 0.10
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.31
Consensus pattern (47 bp):
AAATAAAATAAATAATAATAGATAATAGATATAATAATAATAGATAA
Found at i:60735267 original size:34 final size:34
Alignment explanation
Indices: 60735204--60735268 Score: 80
Period size: 32 Copynumber: 1.9 Consensus size: 34
60735194 ATATAAATAG
* *
60735204 ATAATAGATAATAGATAATATAATAATAGATCGA
1 ATAATAGATAATAAATAATATAAAAATAGATCGA
60735238 ATAATA-A-AATAAATAATATAGAAATATAGAT
1 ATAATAGATAATAAATAATATA-AAA-ATAGAT
60735269 TTATAAATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 12 0.44
33 3 0.11
34 12 0.44
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (34 bp):
ATAATAGATAATAAATAATATAAAAATAGATCGA
Found at i:60735298 original size:14 final size:14
Alignment explanation
Indices: 60735279--60735319 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
60735269 TTATAAATCG
60735279 AAATATATTAATAT
1 AAATATATTAATAT
*
60735293 AAATATAATAATAT
1 AAATATATTAATAT
60735307 AAATATTATTAAT
1 AAATA-TATTAAT
60735320 TACTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:60735376 original size:26 final size:26
Alignment explanation
Indices: 60735285--60735376 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 26
60735275 ATCGAAATAT
*
60735285 ATTAATA-TAAATA-TAATAATATAA
1 ATTAATATTAATTACTAATAATATAA
* *
60735309 A-TATTATTAATTACT--TAATAT-T
1 ATTAATATTAATTACTAATAATATAA
* * *
60735331 CTTAATATTAATAACAAATAATATAA
1 ATTAATATTAATTACTAATAATATAA
*
60735357 ATTAATATTAATTGCTAATA
1 ATTAATATTAATTACTAATA
60735377 CCTTGTAATT
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
23 21 0.42
24 6 0.12
25 7 0.14
26 16 0.32
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (26 bp):
ATTAATATTAATTACTAATAATATAA
Found at i:60736596 original size:19 final size:19
Alignment explanation
Indices: 60736574--60736613 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
60736564 TTAAACTTTT
* *
60736574 ATTATACTTTTCTATTCTA
1 ATTAAACTTTTCGATTCTA
60736593 ATTAAACTTTTCGATTCTA
1 ATTAAACTTTTCGATTCTA
60736612 AT
1 AT
60736614 AAAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.15, G:0.03, T:0.53
Consensus pattern (19 bp):
ATTAAACTTTTCGATTCTA
Found at i:60739338 original size:18 final size:19
Alignment explanation
Indices: 60739307--60739345 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
60739297 GGGAATTTGG
60739307 AATGGAGAAGAAGAAAGAA
1 AATGGAGAAGAAGAAAGAA
*
60739326 AATGGAG-AGAAGAGAGAA
1 AATGGAGAAGAAGAAAGAA
60739344 AA
1 AA
60739346 GATGTGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.05
Consensus pattern (19 bp):
AATGGAGAAGAAGAAAGAA
Found at i:60750778 original size:46 final size:47
Alignment explanation
Indices: 60750725--60750900 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 47
60750715 TATTTGGGCA
* *
60750725 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGC-AAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAGCG
*** * * * *
60750771 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGAAGCG
* *
60750818 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-CG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAGCG
* *
60750864 -CCTGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60750901 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 67 0.63
47 38 0.36
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAGCG
Found at i:60750883 original size:93 final size:93
Alignment explanation
Indices: 60750721--60750892 Score: 258
Period size: 93 Copynumber: 1.8 Consensus size: 93
60750711 GGGATATTTG
* *
60750721 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATACAAGCGTCCGAACTCGTTGAG
60750786 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
60750814 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-CG-CCTGAGCTCGTTG
1 GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATAC-AAGCGTCC-GAACTCGTTG
*
60750877 ATTTGAGTCCGAGTTC
64 AGTTGAGTCCGAGTTC
60750893 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 2 0.03
93 67 0.94
94 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATACAAGCGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:60758916 original size:43 final size:43
Alignment explanation
Indices: 60758845--60758967 Score: 137
Period size: 42 Copynumber: 2.9 Consensus size: 43
60758835 CAAAAAGCAT
* *
60758845 ATACAATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAA
1 ATACGATGCCAACTGTCCCAGACAG-GGTCTTACACGTAATCAA
* *
60758887 ATATCGATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAG
1 ATA-CGATGCCAACTGTCCCAGACAGGGTCTTACACGTAATCAA
* * *
60758930 ATACGATGCCGA-TGTCCCAGGCATGGTCTTACACGTAA
1 ATACGATGCCAACTGTCCCAGACAGGGTCTTACACGTAA
60758968 AACAAAAGTC
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
42 35 0.50
43 34 0.49
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
ATACGATGCCAACTGTCCCAGACAGGGTCTTACACGTAATCAA
Found at i:60758958 original size:42 final size:43
Alignment explanation
Indices: 60758850--60759007 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
60758840 AGCATATACA
* * *
60758850 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
60758893 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAGATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
60758935 ATGCCGA-TGTCCCAGGCATGGTCTTACACGTAAAACAAA-AGTCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACG-AAATCAAATA-TCG
* * *
60758979 ATGTCAAC-GTCCTAGACGTGGTCTTACAC
1 ATG-CCACTGTCCCAGACATGGTCTTACAC
60759008 AATAACACAT
Statistics
Matches: 95, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
42 31 0.33
43 39 0.41
44 24 0.25
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:60762293 original size:38 final size:38
Alignment explanation
Indices: 60762244--60762319 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
60762234 TGGGTTGTGT
*
60762244 AAATTCCTGAACTTCCAAGTCCAATAGTTTGAACTGTA
1 AAATTCCTGAACTTCCAAGTCCAACAGTTTGAACTGTA
* **
60762282 AAATTCTTGAACTTCCAAGTTTAACAGTTTGAACTGTA
1 AAATTCCTGAACTTCCAAGTCCAACAGTTTGAACTGTA
60762320 GTTGTTAACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (38 bp):
AAATTCCTGAACTTCCAAGTCCAACAGTTTGAACTGTA
Found at i:60765392 original size:27 final size:26
Alignment explanation
Indices: 60765303--60765417 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 26
60765293 AGCATGGCTG
*
60765303 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
60765329 CC-GATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
*
60765355 CCAGAAACAGATATCTGTGGCAGAGCCA
1 CCAG-AACAGATAT-TGTGACAGAGCCA
*
60765383 CCAGATCAGATATTTGTGACAGAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
*
60765410 CTAGAACA
1 CCAGAACA
60765418 CTTCCTCCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
25 2 0.03
26 23 0.29
27 34 0.44
28 19 0.24
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:60773237 original size:28 final size:28
Alignment explanation
Indices: 60773154--60773239 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 28
60773144 AGCATGACTG
*
60773154 CCAG-AACAGATA-TTGTA-CAGAGTCA
1 CCAGAAACAGATATTTGTAGCAGAGCCA
*
60773179 CCAGATACAGATATTATG--GCAGAGCCA
1 CCAGAAACAGATATT-TGTAGCAGAGCCA
60773206 CCAGAAACAGATATTTGTAGCAGAGCCA
1 CCAGAAACAGATATTTGTAGCAGAGCCA
60773234 CCAGAA
1 CCAGAA
60773240 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
25 4 0.08
26 9 0.17
27 22 0.42
28 17 0.33
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTAGCAGAGCCA
Found at i:60773372 original size:26 final size:26
Alignment explanation
Indices: 60773343--60773405 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
60773333 AAAATTAACC
60773343 CTAGGGGTATAATGGTAATTTTACAT-
1 CTAGGGGTATAATGGTAATTTT-CATA
60773369 CTAGGGGTATAATGGTAATTTTCATA
1 CTAGGGGTATAATGGTAATTTTCATA
60773395 CTTAGGGGTAT
1 C-TAGGGGTAT
60773406 TTTAGTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.09
26 23 0.66
27 9 0.26
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (26 bp):
CTAGGGGTATAATGGTAATTTTCATA
Found at i:60786681 original size:24 final size:24
Alignment explanation
Indices: 60786654--60786699 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
60786644 TCAAGGAATG
*
60786654 GATTATGGAGAAAATCAAGGAGAA
1 GATTAGGGAGAAAATCAAGGAGAA
* * *
60786678 GATTGGGGAGGAAATCATGGAG
1 GATTAGGGAGAAAATCAAGGAG
60786700 GGATTTTAGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.41, C:0.04, G:0.37, T:0.17
Consensus pattern (24 bp):
GATTAGGGAGAAAATCAAGGAGAA
Found at i:60788745 original size:32 final size:32
Alignment explanation
Indices: 60788700--60788790 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 32
60788690 GTATTTACTC
* * *
60788700 ATGGCTGTGTGCCAATTATATTACCGTCGCTG
1 ATGGCTATGTGCCAATTATATTACCGTCACCG
* * *
60788732 ATGGCTATATGCCAAATT-TATTACAGTTACCG
1 ATGGCTATGTGCC-AATTATATTACCGTCACCG
* *
60788764 ATGGCTTTGTGCCAATTATAATACCGT
1 ATGGCTATGTGCCAATTATATTACCGT
60788791 TGTTGAAGGC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
31 4 0.09
32 39 0.83
33 4 0.09
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (32 bp):
ATGGCTATGTGCCAATTATATTACCGTCACCG
Found at i:60793727 original size:48 final size:48
Alignment explanation
Indices: 60793656--60793826 Score: 174
Period size: 48 Copynumber: 3.6 Consensus size: 48
60793646 TATGTGTGCT
*
60793656 AGACCATGTTTGGGACATGGCATCGGCCACATTATAAGAGCCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCCACATTATAAGAGCCAGTGTA
* * *
60793704 AGACCATGTCTCGGACATGGCATC-G--ACATTGAGACATGAGCTAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGCCACATT-ATA-A-GAGCCAGTGTA
*
60793752 AGACCATGTCTGGGACATGGCATCGGCGTCGACA-TGT--GAGCCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGGC--C-ACATTATAAGAGCCAGTGTA
* * *
60793800 AAACCATATCTGGGATATGGCATCGGC
1 AGACCATGTCTGGGACATGGCATCGGC
60793827 AATTTACCCT
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
45 5 0.05
46 2 0.02
47 2 0.02
48 89 0.86
49 1 0.01
53 1 0.01
54 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (48 bp):
AGACCATGTCTGGGACATGGCATCGGCCACATTATAAGAGCCAGTGTA
Found at i:60795045 original size:28 final size:28
Alignment explanation
Indices: 60795009--60795073 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
60794999 CACGGGCTGA
*
60795009 GACATGGGCGTGTCATGGCCGTATGAGG
1 GACACGGGCGTGTCATGGCCGTATGAGG
*
60795037 GACACGGGCGTGTCATGGCCGTGTGAGG
1 GACACGGGCGTGTCATGGCCGTATGAGG
60795065 GACACGGGC
1 GACACGGGC
60795074 CATGGAGACG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.17
Consensus pattern (28 bp):
GACACGGGCGTGTCATGGCCGTATGAGG
Found at i:60801256 original size:47 final size:47
Alignment explanation
Indices: 60801187--60801282 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
60801177 CTTTTTGTGA
* *
60801187 AAAAAAAAGATGGTTTGATGAGATTGTGCATAAATTATTGGCAGCTT
1 AAAAAAAAGATGGTTCGATGAGATTGTGCATAAATTATCGGCAGCTT
*
60801234 AAAAAAAAGATGGTTCGATGAGATTGTGCATAGATTATCGGCAGCTT
1 AAAAAAAAGATGGTTCGATGAGATTGTGCATAAATTATCGGCAGCTT
60801281 AA
1 AA
60801283 CAAGGTGACT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (47 bp):
AAAAAAAAGATGGTTCGATGAGATTGTGCATAAATTATCGGCAGCTT
Found at i:60807889 original size:53 final size:53
Alignment explanation
Indices: 60807707--60807915 Score: 204
Period size: 53 Copynumber: 3.9 Consensus size: 53
60807697 ATTAGGGTTT
* * * *
60807707 AAGGATACCA-AGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATA-TAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * *
60807761 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
60807816 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
60807869 AAGGATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCA
60807916 AAAAGGAAAG
Statistics
Matches: 124, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 47 0.38
54 37 0.30
55 40 0.32
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATATAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:60811629 original size:44 final size:44
Alignment explanation
Indices: 60811545--60811632 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
60811535 ATTTATTCTC
* *
60811545 ATGAAAATACTGAGCATTCAGAGCATTTGAGAACGATTTTACAG
1 ATGAAAACACTGAGCATTCAGAGCATTTGAGAAAGATTTTACAG
60811589 ATGAAAACACTGAGCATTCAGAGCATTTGAGAATAG-TTTTACAG
1 ATGAAAACACTGAGCATTCAGAGCATTTGAGAA-AGATTTTACAG
60811633 TTTTTGAGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 40 0.98
45 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (44 bp):
ATGAAAACACTGAGCATTCAGAGCATTTGAGAAAGATTTTACAG
Found at i:60814980 original size:53 final size:53
Alignment explanation
Indices: 60814803--60815009 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
60814793 ATTAGGGTTT
* * * *
60814803 AAGGATACCAAGTAAGACCATGCCAAGGCATGG-AATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * * * * * *
60814857 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
** * * * *
60814912 AAAAATCCCATGTAAGACCATGCCAAGGCATTGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
60814965 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
60815010 TGAAAGGGAA
Statistics
Matches: 117, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 39 0.33
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:60818186 original size:38 final size:39
Alignment explanation
Indices: 60818046--60818277 Score: 317
Period size: 39 Copynumber: 6.0 Consensus size: 39
60818036 GTGTGAGATA
* * *
60818046 TATATCCGGGCTAATTCCCGAAGGCGTTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
60818085 TATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
60818124 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
60818163 TATATCCGGG-TAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
** * *
60818201 TATATCTAGGCTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
60818239 TATATCCGGGCTTAAAGTCCCGCATGCATT-GTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTCGTGCTGGTG
60818278 ATTGAATTTG
Statistics
Matches: 172, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
38 56 0.33
39 96 0.56
40 18 0.10
41 2 0.01
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:60821960 original size:40 final size:40
Alignment explanation
Indices: 60821900--60821978 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
60821890 ACAATCTCAC
* *
60821900 ACACTAAGTGCTATATATAGCCAAAGCAATCTGGAATCGT
1 ACACTAAGTGCCATACATAGCCAAAGCAATCTGGAATCGT
* * *
60821940 ACACTAAGTGCCATACATAGCCAACGCTATCTTGAATCG
1 ACACTAAGTGCCATACATAGCCAAAGCAATCTGGAATCG
60821979 CACAATATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.24
Consensus pattern (40 bp):
ACACTAAGTGCCATACATAGCCAAAGCAATCTGGAATCGT
Found at i:60823678 original size:28 final size:28
Alignment explanation
Indices: 60823637--60823735 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
60823627 AATATATGCT
*
60823637 CTATGTGTGCGAGATTAGTAACCGAACA
1 CTATGTGTGCGAGATTAGTAACCGAGCA
* *
60823665 TTATGTGTGCGAGATCAGGTGTAA--G-GCA
1 CTATGTGTGCGAGATTA---GTAACCGAGCA
* *
60823693 CTATGTGTGCGAAATTATTAACCGAGCA
1 CTATGTGTGCGAGATTAGTAACCGAGCA
60823721 CTATGTGTGCGAGAT
1 CTATGTGTGCGAGAT
60823736 CGGGTGTAAG
Statistics
Matches: 57, Mismatches: 8, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 3 0.05
27 1 0.02
28 48 0.84
29 1 0.02
31 4 0.07
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
CTATGTGTGCGAGATTAGTAACCGAGCA
Found at i:60823726 original size:56 final size:56
Alignment explanation
Indices: 60823637--60823757 Score: 197
Period size: 56 Copynumber: 2.2 Consensus size: 56
60823627 AATATATGCT
* *
60823637 CTATGTGTGCGAGATTAGTAACCGAACATTATGTGTGCGAGATCAGGTGTAAGGCA
1 CTATGTGTGCGAAATTAGTAACCGAACACTATGTGTGCGAGATCAGGTGTAAGGCA
* * *
60823693 CTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGCA
1 CTATGTGTGCGAAATTAGTAACCGAACACTATGTGTGCGAGATCAGGTGTAAGGCA
60823749 CTATGTGTG
1 CTATGTGTG
60823758 TGCAAATTTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (56 bp):
CTATGTGTGCGAAATTAGTAACCGAACACTATGTGTGCGAGATCAGGTGTAAGGCA
Found at i:60823749 original size:28 final size:27
Alignment explanation
Indices: 60823666--60823757 Score: 98
Period size: 28 Copynumber: 3.3 Consensus size: 27
60823656 AACCGAACAT
60823666 TATGTGTGCGAGATCAGGTGTAAGGCAC
1 TATGTGTGCGAGATC-GGTGTAAGGCAC
* **
60823694 TATGTGTGCGAAAT-TAT-TAACCGAGCAC
1 TATGTGTGCGAGATCGGTGTAA--G-GCAC
60823722 TATGTGTGCGAGATCGGGTGTAAGGCAC
1 TATGTGTGCGAGATC-GGTGTAAGGCAC
60823750 TATGTGTG
1 TATGTGTG
60823758 TGCAAATTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 42 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (27 bp):
TATGTGTGCGAGATCGGTGTAAGGCAC
Found at i:60831318 original size:28 final size:28
Alignment explanation
Indices: 60831286--60831383 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
60831276 ATGAATATAT
60831286 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* * **
60831314 GCACTATGTGTGTGAAAT--TAT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
*
60831341 AGCACTATGTGTGCAAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
*
60831370 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
60831384 CAAAATTATT
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 43 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:60832754 original size:16 final size:17
Alignment explanation
Indices: 60832733--60832764 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
60832723 AATTTAGCCT
60832733 AAAATTTACA-ATTTGG
1 AAAATTTACACATTTGG
60832749 AAAATTTACACATTTG
1 AAAATTTACACATTTG
60832765 CCCCTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (17 bp):
AAAATTTACACATTTGG
Found at i:60835767 original size:40 final size:40
Alignment explanation
Indices: 60835723--60835946 Score: 211
Period size: 40 Copynumber: 5.5 Consensus size: 40
60835713 TGACAAATCA
*
60835723 GCTATATGTGGCACTTAGTGTGCGATTCGAA-ATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTC-AAGATAGCTTCG
60835763 GCTATATATGGCACTTAGTGTGCAAGA-TCAAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGC--GATTCAAGATAGCTTCG
* * *
60835804 GCTATGTATGGCACTTAATGTGCGATTCAAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCAAGATAGCTTCG
* * * * * *
60835844 GCTATGTATGACACTTAGTGCGTGATTCGAGATAGCTACG
1 GCTATATATGGCACTTAGTGTGCGATTCAAGATAGCTTCG
* ** * * *
60835884 GATATATAACGCACTTAGTGTGTGAGATT-AAAATAGCTTCA
1 GCTATATATGGCACTTA--GTGTGCGATTCAAGATAGCTTCG
* *
60835925 GCTATGTATTGACACTTAGTGT
1 GCTATATA-TGGCACTTAGTGT
60835947 ACAAGAATTC
Statistics
Matches: 150, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
39 2 0.01
40 86 0.57
41 46 0.31
42 16 0.11
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCAAGATAGCTTCG
Found at i:60842898 original size:17 final size:18
Alignment explanation
Indices: 60842876--60842909 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60842866 CACATTAAAT
60842876 TGTTTT-AGTGAAAACCG
1 TGTTTTCAGTGAAAACCG
*
60842893 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
60842910 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCG
Found at i:60844247 original size:8 final size:8
Alignment explanation
Indices: 60844234--60844276 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
60844224 GTAGCCAAAC
60844234 TTTCGGCT
1 TTTCGGCT
*
60844242 TTTCGGCG
1 TTTCGGCT
*
60844250 TTTCAGCT
1 TTTCGGCT
*
60844258 TTTCGGCA
1 TTTCGGCT
*
60844266 TTTCTGCT
1 TTTCGGCT
60844274 TTT
1 TTT
60844277 GCCGATACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.05, C:0.23, G:0.21, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:60844258 original size:16 final size:16
Alignment explanation
Indices: 60844234--60844276 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
60844224 GTAGCCAAAC
* *
60844234 TTTCGGCTTTTCGGCG
1 TTTCAGCTTTTCGGCA
60844250 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
60844266 TTTCTGCTTTT
1 TTTCAGCTTTT
60844277 GCCGATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.05, C:0.23, G:0.21, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:60845510 original size:16 final size:16
Alignment explanation
Indices: 60845485--60845516 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60845475 AAGTTCAGGA
*
60845485 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
60845501 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
60845517 GCGTTACATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:60853629 original size:24 final size:25
Alignment explanation
Indices: 60853595--60853643 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
60853585 CACAAACGCA
60853595 GCTCTATATGAGCATCTTGATATAG
1 GCTCTATATGAGCATCTTGATATAG
**
60853620 GCTCT-TATGAGTTTCTTGATATAG
1 GCTCTATATGAGCATCTTGATATAG
60853644 CTCACTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.41
Consensus pattern (25 bp):
GCTCTATATGAGCATCTTGATATAG
Found at i:60856489 original size:47 final size:47
Alignment explanation
Indices: 60856364--60856525 Score: 216
Period size: 47 Copynumber: 3.4 Consensus size: 47
60856354 CAGCCAAGAG
60856364 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
60856411 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
60856460 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
60856507 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
60856526 TCCCGAAAGG
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
47 54 0.53
49 47 0.47
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:60856700 original size:37 final size:37
Alignment explanation
Indices: 60856644--60856722 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
60856634 CCGAGCTCTA
* * *
60856644 AAGACCCGATTACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
60856681 AAGACCCGATAACTTCGTGTGTAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
60856718 AAGAC
1 AAGAC
60856723 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:60859967 original size:42 final size:42
Alignment explanation
Indices: 60859916--60860004 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 42
60859906 TAATGTAGTC
60859916 AGAT-TTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAG
1 AGATATTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAG
60859957 AGATATTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAG
1 AGATATTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAG
60859999 AGATAT
1 AGATAT
60860005 CATATCTTTC
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (42 bp):
AGATATTGAGAATGAGTTAGTAAGTAAAGATGGTTTTAAAAG
Found at i:60864540 original size:22 final size:22
Alignment explanation
Indices: 60864515--60864556 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
60864505 CTAAGGGTAT
60864515 TAGCTACCACATTAGCCTTATC
1 TAGCTACCACATTAGCCTTATC
60864537 TAGCTACCACATTAGCCTTA
1 TAGCTACCACATTAGCCTTA
60864557 CCCAGATGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (22 bp):
TAGCTACCACATTAGCCTTATC
Found at i:60867587 original size:20 final size:20
Alignment explanation
Indices: 60867562--60867600 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
60867552 ATTCATTGTC
60867562 GTACGTACCTGTACCATCTT
1 GTACGTACCTGTACCATCTT
60867582 GTACGTACCTGTACCATCT
1 GTACGTACCTGTACCATCT
60867601 CGTAGTCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (20 bp):
GTACGTACCTGTACCATCTT
Found at i:60873770 original size:42 final size:42
Alignment explanation
Indices: 60873723--60873810 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
60873713 CTATAGGCCC
* * *
60873723 ATTTCAATATCACATGTAAT-GTCAATGGATGTATGCAAGCCT
1 ATTTCAATATCACATGAAATACT-AATGAATGTATGCAAGCCT
*
60873765 ATTTCAATATCATATGAAATACTAATGAATGTATGCAAGCCT
1 ATTTCAATATCACATGAAATACTAATGAATGTATGCAAGCCT
60873807 ATTT
1 ATTT
60873811 TGGGAGACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACTAATGAATGTATGCAAGCCT
Found at i:60874020 original size:26 final size:26
Alignment explanation
Indices: 60873941--60874064 Score: 171
Period size: 26 Copynumber: 4.8 Consensus size: 26
60873931 ATCTGGAGGC
**
60873941 AAACTGGGGCA-AAGCCCTTTTCGGT
1 AAACTGGGGCATAAGCCCTTTTCAAT
*
60873966 AAACTGGGGCA-GAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCTTTTCAAT
* * **
60873991 AAACTGGGGCATAAGGCCATTTCGGT
1 AAACTGGGGCATAAGCCCTTTTCAAT
60874017 AAACTGGGGCATAAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCTTTTCAAT
60874043 AAACTGGGGCATAAGCCCTTTT
1 AAACTGGGGCATAAGCCCTTTT
60874065 GCACTTCCTC
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 33 0.38
26 53 0.62
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
AAACTGGGGCATAAGCCCTTTTCAAT
Found at i:60874047 original size:52 final size:51
Alignment explanation
Indices: 60873941--60874060 Score: 197
Period size: 52 Copynumber: 2.4 Consensus size: 51
60873931 ATCTGGAGGC
* *
60873941 AAACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAGAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCATTTCGGTAAACTGGGGCAAAGCCCTTTTCAAT
*
60873991 AAACTGGGGCATAAGGCCATTTCGGTAAACTGGGGCATAAGCCCTTTTCAAT
1 AAACTGGGGCATAAGCCCATTTCGGTAAACTGGGGCA-AAGCCCTTTTCAAT
60874043 AAACTGGGGCATAAGCCC
1 AAACTGGGGCATAAGCCC
60874061 TTTTGCACTT
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 11 0.17
51 23 0.36
52 30 0.47
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (51 bp):
AAACTGGGGCATAAGCCCATTTCGGTAAACTGGGGCAAAGCCCTTTTCAAT
Found at i:60874935 original size:27 final size:26
Alignment explanation
Indices: 60874874--60874950 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 26
60874864 GGCGGATTCA
60874874 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACC-TACAGGGGTATTACGG
*
60874901 TCACTTTATCCTACAGGGGCT-TTACGG
1 TCATTTTA-CCTACAGGGG-TATTACGG
* *
60874928 TCTTTTTACCTATTAGGGGTATT
1 TCATTTTACCTA-CAGGGGTATT
60874951 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 5 0.12
27 34 0.81
28 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (26 bp):
TCATTTTACCTACAGGGGTATTACGG
Found at i:60875021 original size:27 final size:27
Alignment explanation
Indices: 60874991--60875098 Score: 96
Period size: 27 Copynumber: 3.9 Consensus size: 27
60874981 GTAAATCTAC
60874991 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
60875018 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
60875044 AGAAAGTCAAGGGTATTTCCGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* **
60875074 AAATC-AGGTGTATTTTGGTAATTTT
1 AAACCAAGG-GTATTTCAGTAATTTT
60875099 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
26 4 0.06
27 38 0.56
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:60875104 original size:27 final size:26
Alignment explanation
Indices: 60875053--60875327 Score: 214
Period size: 27 Copynumber: 10.2 Consensus size: 26
60875043 TAGAAAGTCA
** **
60875053 AGGGTATTTCCGTAATTTTGTAAATC
1 AGGGTATTTTGGTAATTTTACAAATC
*
60875079 AGGTGTATTTTGGTAATTTTACAAATTG
1 AGG-GTATTTTGGTAATTTTACAAA-TC
* * * *
60875107 AGGGTATTTCGATAATTTCACAAACC
1 AGGGTATTTTGGTAATTTTACAAATC
*
60875133 TGTGGTATTTTGGTAATTTTACAAA-C
1 AG-GGTATTTTGGTAATTTTACAAATC
*
60875159 TAGGGGTATTTTGGTAATTTTACAAATTG
1 -A-GGGTATTTTGGTAATTTTACAAA-TC
*
60875188 AGGGTATTTCGGTAATTTTACAAA-C
1 AGGGTATTTTGGTAATTTTACAAATC
* * *
60875213 TAGGGGTATTTTAGCAATTTTACAGAGT-
1 -A-GGGTATTTTGGTAATTTTACA-AATC
* **
60875241 AAGGTATTTTGGTAATTTTACTGATC
1 AGGGTATTTTGGTAATTTTACAAATC
** *
60875267 GAGGGTATTTTGGTAATTTTGTAAACC
1 -AGGGTATTTTGGTAATTTTACAAATC
* *
60875294 AAGGGTATTTTAGTAATTTTATAAATC
1 -AGGGTATTTTGGTAATTTTACAAATC
60875321 GAGGGTA
1 -AGGGTA
60875328 AAACAGTAAT
Statistics
Matches: 197, Mismatches: 39, Indels: 25
0.75 0.15 0.10
Matches are distributed among these distances:
25 1 0.01
26 23 0.12
27 166 0.84
28 7 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAATC
Found at i:60875171 original size:81 final size:80
Alignment explanation
Indices: 60875083--60875314 Score: 277
Period size: 81 Copynumber: 2.9 Consensus size: 80
60875073 TAAATCAGGT
* * * *
60875083 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCT-GTGGTATTTTGGT
1 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTAGGGGTATTTTAGC
*
60875147 AATTTTACAAACTAGGG
65 AATTTTACAAACTA-AG
*
60875164 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAGCA
1 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTTAGCA
* *
60875229 ATTTTACAGAGTAAG
66 ATTTTACAAACTAAG
** * * *** * * *
60875244 GTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTA
1 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTTAGCA
60875309 ATTTTA
66 ATTTTA
60875315 TAAATCGAGG
Statistics
Matches: 133, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 65 0.49
81 68 0.51
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTTAGCA
ATTTTACAAACTAAG
Found at i:60875335 original size:27 final size:27
Alignment explanation
Indices: 60875305--60875408 Score: 154
Period size: 27 Copynumber: 3.9 Consensus size: 27
60875295 AGGGTATTTT
*
60875305 AGTAATTTTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
60875332 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
60875359 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
60875386 GGTAATTCTATAAATTGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
60875409 CTTTGGTAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:60875337 original size:54 final size:54
Alignment explanation
Indices: 60875279--60875399 Score: 152
Period size: 54 Copynumber: 2.2 Consensus size: 54
60875269 GGGTATTTTG
* **** *
60875279 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
* * *
60875333 GTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
*
60875387 GTAATTCTATAAA
1 GTAATTCTGTAAA
60875400 TTGAGGGTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:60877976 original size:26 final size:26
Alignment explanation
Indices: 60877900--60878021 Score: 158
Period size: 26 Copynumber: 4.8 Consensus size: 26
60877890 TCTTTTAATT
**
60877900 ACTGGGGCA-AAGCCCTTTTCGGTAA
1 ACTGGGGCATAAGCCCTTTTCAATAA
* *
60877925 ACTAGGGCA-GAGCCCTTTTCAATAA
1 ACTGGGGCATAAGCCCTTTTCAATAA
* **
60877950 ACTGGGGCATAAGTCCTTTTCGGTAA
1 ACTGGGGCATAAGCCCTTTTCAATAA
60877976 ACTGGGGCATAAGCCCTTTTCAATAA
1 ACTGGGGCATAAGCCCTTTTCAATAA
*
60878002 ACTAGGGCATAAGCCCTTTT
1 ACTGGGGCATAAGCCCTTTT
60878022 GCACTTCCTC
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
25 29 0.35
26 54 0.65
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
ACTGGGGCATAAGCCCTTTTCAATAA
Found at i:60878010 original size:52 final size:51
Alignment explanation
Indices: 60877904--60878021 Score: 184
Period size: 52 Copynumber: 2.3 Consensus size: 51
60877894 TTAATTACTG
* *
60877904 GGGCA-AAGCCCTTTTCGGTAAACTAGGGCAGAGCCCTTTTCAATAAACTG
1 GGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATAAACTA
* *
60877954 GGGCATAAGTCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTA
1 GGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGCCCTTTTCAATAAACTA
60878006 GGGCATAAGCCCTTTT
1 GGGCATAAGCCCTTTT
60878022 GCACTTCCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 5 0.08
51 23 0.38
52 33 0.54
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (51 bp):
GGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGCCCTTTTCAATAAACTA
Found at i:60878893 original size:27 final size:27
Alignment explanation
Indices: 60878832--60878908 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
60878822 GGCGTATTCA
60878832 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* *
60878859 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGG
* *
60878886 TCTTTTTACC-TATTAGGGGTATT
1 TCATTTTACCATA-CAGGGGTATT
60878909 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:60879062 original size:27 final size:27
Alignment explanation
Indices: 60878998--60879229 Score: 159
Period size: 27 Copynumber: 8.6 Consensus size: 27
60878988 TTTCTATAAT
* * *
60878998 TTTTAGAAAGTCAAGGGTATTTTCGTAA
1 TTTTACAAA-TCAGGGGTATTTTGGTAA
**
60879026 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* * *
60879053 TTTTACAAAT-TGAGGGTATTTCGATAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * * *
60879080 TTTCACAAACCTGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
60879107 TTTTACAAA-CTAGGGGTATTTTAGCAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* *
60879134 TTTTACAGAGT-A-AGGTATTTTGGTAA
1 TTTTACA-AATCAGGGGTATTTTGGTAA
**
60879160 TTTTACTGATC-GAGGGTATTTTGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
** * * *
60879187 TTTTGTAAACCAAGGGTATTTTAGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
*
60879214 TTTTATAAATCGAGGG
1 TTTTACAAATC-AGGG
60879230 TAAAACAGTA
Statistics
Matches: 157, Mismatches: 37, Indels: 20
0.73 0.17 0.09
Matches are distributed among these distances:
25 1 0.01
26 19 0.12
27 124 0.79
28 13 0.08
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:60879230 original size:27 final size:27
Alignment explanation
Indices: 60878955--60879285 Score: 147
Period size: 27 Copynumber: 12.2 Consensus size: 27
60878945 CTACAAACCA
* * * *
60878955 AGGGTATTTCAGTAATTTTGTAAACCT
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
60878982 ATGGTATTTCTA-TAATTTTTAGAAAGTCA
1 AGGGTATTT-TAGTAA-TTTTATAAA-TCG
* *
60879011 AGGGTATTTTCGTAATTTTGTAAATC-
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
60879037 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTAGTAATTTTATAAATCG
* * * *
60879065 AGGGTA-TTTCGATAATTTCACAAACCTG
1 AGGGTATTTTAG-TAATTTTATAAATC-G
* * * *
60879093 -TGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTATAAATCG
* * *
60879118 AGGGGTATTTTAGCAATTTTACAGA--G
1 A-GGGTATTTTAGTAATTTTATAAATCG
* * *
60879144 TAAGGTATTTTGGTAATTTTACT-GATCG
1 -AGGGTATTTTAGTAATTTTA-TAAATCG
* * * *
60879172 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTATAAATCG
60879199 AGGGTATTTTAGTAATTTTATAAATCG
1 AGGGTATTTTAGTAATTTTATAAATCG
**** * * *
60879226 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTTAGTAATTTTATAAATCG
**** *
60879253 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTATTTTAGTAATTTTATAAATCG
60879280 AGGGTA
1 AGGGTA
60879286 AAACGGTAAT
Statistics
Matches: 239, Mismatches: 49, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
26 25 0.10
27 179 0.75
28 23 0.10
29 12 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTATAAATCG
Found at i:60879231 original size:107 final size:107
Alignment explanation
Indices: 60878934--60879231 Score: 262
Period size: 107 Copynumber: 2.7 Consensus size: 107
60878924 TACAAGGGTG
* * * * * *
60878934 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCTATGGTATTTCTA-TAAT
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGTAAACC-AGGGTATTT-TAGTAA-
* * * ** *
60878998 TTTTAGAAAGTCAAGGGTATTTTCGTAATTTTGTAAATCAGGGGTA
63 TTTTACAAA-TCAAGGGTATTTTAGCAATTTTACAAATCAGAGGTA
* * *** * *
60879044 TTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCTGTGGTATTTTGGTAATT
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGTAAACCAG-GGTATTTTAGTAATT
* *
60879109 TTACAAA-CTAGGGGTATTTTAGCAATTTTACAGAGT-A-AGGTA
65 TTACAAATC-AAGGGTATTTTAGCAATTTTACA-AATCAGAGGTA
** *
60879151 TTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATT
1 TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGTAAACC-AGGGTATTTTAGTAATT
* *
60879216 TTATAAATCGAGGGTA
65 TTACAAATCAAGGGTA
60879232 AAACAGTAAT
Statistics
Matches: 148, Mismatches: 34, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
107 69 0.47
108 21 0.14
109 11 0.07
110 47 0.32
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (107 bp):
TTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTGTAAACCAGGGTATTTTAGTAATTT
TACAAATCAAGGGTATTTTAGCAATTTTACAAATCAGAGGTA
Found at i:60879241 original size:54 final size:54
Alignment explanation
Indices: 60879183--60879303 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 54
60879173 GGGTATTTTG
* **** *
60879183 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
* *
60879237 GTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
*
60879291 GTAATTCTATAAA
1 GTAATTCTGTAAA
60879304 TTGAGGGTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.31
Consensus pattern (54 bp):
GTAATTCTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:60879286 original size:27 final size:27
Alignment explanation
Indices: 60879209--60879312 Score: 163
Period size: 27 Copynumber: 3.9 Consensus size: 27
60879199 AGGGTATTTT
*
60879209 AGTAATTTTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
60879236 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
60879263 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
60879290 GGTAATTCTATAAATTGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
60879313 CTTTGGTAAC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:60886638 original size:22 final size:22
Alignment explanation
Indices: 60886595--60886638 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
60886585 TCACTAATTC
* *
60886595 ATCATAATATCATCTATTTCAT
1 ATCATAAAATCATCTATATCAT
60886617 ATCATAAAACTCAT-TATATCAT
1 ATCATAAAA-TCATCTATATCAT
60886639 CATCTCAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (22 bp):
ATCATAAAATCATCTATATCAT
Found at i:60888725 original size:16 final size:17
Alignment explanation
Indices: 60888691--60888734 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
60888681 AATATTTCTA
60888691 TTTTCTTTTTCATCATTT
1 TTTTC-TTTTCATCATTT
*
60888709 TTTTCTTTTC-TCCTTT
1 TTTTCTTTTCATCATTT
*
60888725 TTTTATTTTC
1 TTTTCTTTTC
60888735 CTACCCTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.58
17 5 0.21
18 5 0.21
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTTCATCATTT
Found at i:60889912 original size:24 final size:24
Alignment explanation
Indices: 60889880--60889926 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
60889870 ATAAATTTAA
*
60889880 ATACTAATTTTATATTTAACCCAT
1 ATACCAATTTTATATTTAACCCAT
*
60889904 ATACCAATTTTATATTTATCCCA
1 ATACCAATTTTATATTTAACCCA
60889927 ATCCGAGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (24 bp):
ATACCAATTTTATATTTAACCCAT
Found at i:60891061 original size:66 final size:66
Alignment explanation
Indices: 60890957--60891081 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
60890947 GGTTCCCTTA
* * *
60890957 GTATTGTAATTATGGGTTTGAATTGAATTTCAAGGCAAGAATATACCTCATCTTATTTTTCCCTC
1 GTATTGTAATTACGGGTTTGAATTGAATTTCAAAGCAAGAATATACCTCATCTCATTTTTCCCTC
60891022 G
66 G
* * * *
60891023 GTATTGTACTTACGTGTTTGAATTGAATTGT-AAAGCAAGAATATGCTTCATCTCATTTT
1 GTATTGTAATTACGGGTTTGAATTGAATT-TCAAAGCAAGAATATACCTCATCTCATTTT
60891082 AAGCTCATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 50 0.98
67 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (66 bp):
GTATTGTAATTACGGGTTTGAATTGAATTTCAAAGCAAGAATATACCTCATCTCATTTTTCCCTC
G
Found at i:60894353 original size:18 final size:20
Alignment explanation
Indices: 60894316--60894354 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
60894306 TGTGCGATGC
*
60894316 ACAAATTTATTATATTAATA
1 ACAAATATATTATATTAATA
60894336 ACAAATATA-TAT-TTAATA
1 ACAAATATATTATATTAATA
60894354 A
1 A
60894355 ATTAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 3 0.17
20 8 0.44
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
ACAAATATATTATATTAATA
Found at i:60894839 original size:16 final size:16
Alignment explanation
Indices: 60894818--60894850 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
60894808 GATTTAATCG
60894818 GTTCAATCATTGATCT
1 GTTCAATCATTGATCT
60894834 GTTCAATCATTGATCT
1 GTTCAATCATTGATCT
60894850 G
1 G
60894851 GTTTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.42
Consensus pattern (16 bp):
GTTCAATCATTGATCT
Found at i:60895121 original size:18 final size:18
Alignment explanation
Indices: 60895098--60895136 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
60895088 GATGCAATAT
60895098 AAATT-ATATAAAATTTTA
1 AAATTAATATAAAA-TTTA
60895116 AAATTAATATAAAATTTA
1 AAATTAATATAAAATTTA
60895134 AAA
1 AAA
60895137 GAGTAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATTAATATAAAATTTA
Found at i:60900133 original size:22 final size:25
Alignment explanation
Indices: 60900090--60900134 Score: 69
Period size: 22 Copynumber: 1.9 Consensus size: 25
60900080 TTCTTTTAAG
60900090 AAAATATCATTTAAGAACATAATAA
1 AAAATATCATTTAAGAACATAATAA
60900115 AAAAT-TC-TTTAA-AACATAAT
1 AAAATATCATTTAAGAACATAAT
60900135 TAAACCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 5 0.25
24 2 0.10
25 5 0.25
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (25 bp):
AAAATATCATTTAAGAACATAATAA
Found at i:60900138 original size:23 final size:26
Alignment explanation
Indices: 60900085--60900138 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 26
60900075 AATTTTTCTT
60900085 TTAAGAAAATATCATTTAAGAACATAA
1 TTAA-AAAATATCATTTAAGAACATAA
60900112 -TAAAAAAT-TC-TTTAA-AACATAA
1 TTAAAAAATATCATTTAAGAACATAA
60900134 TTAAA
1 TTAAA
60900139 CCTTTAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 7 0.27
23 9 0.35
24 2 0.08
25 5 0.19
26 3 0.12
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (26 bp):
TTAAAAAATATCATTTAAGAACATAA
Found at i:60900383 original size:16 final size:16
Alignment explanation
Indices: 60900362--60900411 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
60900352 TCTATTTTTG
60900362 AAAAATTGGGGCCTTT
1 AAAAATTGGGGCCTTT
***
60900378 AAAAA-T-AATCC-TT
1 AAAAATTGGGGCCTTT
60900391 AAAAATTGGGGCCTTT
1 AAAAATTGGGGCCTTT
60900407 AAAAA
1 AAAAA
60900412 ATAATCCTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
13 7 0.28
14 3 0.12
15 3 0.12
16 12 0.48
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (16 bp):
AAAAATTGGGGCCTTT
Found at i:60900404 original size:29 final size:30
Alignment explanation
Indices: 60900362--60900420 Score: 111
Period size: 29 Copynumber: 2.0 Consensus size: 30
60900352 TCTATTTTTG
60900362 AAAAATTGGGGCCTTT-AAAAATAATCCTT
1 AAAAATTGGGGCCTTTAAAAAATAATCCTT
60900391 AAAAATTGGGGCCTTTAAAAAATAATCCTT
1 AAAAATTGGGGCCTTTAAAAAATAATCCTT
60900421 TTTTGATGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.31
Consensus pattern (30 bp):
AAAAATTGGGGCCTTTAAAAAATAATCCTT
Found at i:60911649 original size:7 final size:7
Alignment explanation
Indices: 60911637--60911716 Score: 115
Period size: 7 Copynumber: 11.4 Consensus size: 7
60911627 GAGTTGGTGC
60911637 GGGTTTA
1 GGGTTTA
60911644 GGGTTTA
1 GGGTTTA
60911651 GGGTTTA
1 GGGTTTA
**
60911658 AAGTTTA
1 GGGTTTA
60911665 GGGTTTA
1 GGGTTTA
*
60911672 TGGTTTA
1 GGGTTTA
*
60911679 GAGTTTA
1 GGGTTTA
*
60911686 GAGTTTA
1 GGGTTTA
60911693 GGGTTTA
1 GGGTTTA
60911700 GGGTTTA
1 GGGTTTA
60911707 GGGTTTA
1 GGGTTTA
60911714 GGG
1 GGG
60911717 GAAAATCACT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 65 1.00
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (7 bp):
GGGTTTA
Found at i:60930873 original size:27 final size:27
Alignment explanation
Indices: 60930835--60930908 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
60930825 ATCTCGCCAG
* *
60930835 GAAAAGAAAGCCTTTGTGGCGATCTTT
1 GAAAAGGAAGCCTTTGTGGCGATCTAT
* *
60930862 GAAAAGGAAGCCTTCGGGGCGATCTAT
1 GAAAAGGAAGCCTTTGTGGCGATCTAT
* *
60930889 G-AAGGGAATGTCTTTGTGGC
1 GAAAAGGAA-GCCTTTGTGGC
60930909 ACACTCTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 6 0.16
27 32 0.84
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (27 bp):
GAAAAGGAAGCCTTTGTGGCGATCTAT
Found at i:60933148 original size:27 final size:27
Alignment explanation
Indices: 60933110--60933165 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
60933100 TAAGCATTTT
*
60933110 ATGCTTAGTAAGTTCGTATAATGGAAA
1 ATGCTTAGTAAGTTCATATAATGGAAA
60933137 ATGCTTAGTAAGTTCATATAATGGAAA
1 ATGCTTAGTAAGTTCATATAATGGAAA
60933164 AT
1 AT
60933166 AAACTTACCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (27 bp):
ATGCTTAGTAAGTTCATATAATGGAAA
Found at i:60936744 original size:21 final size:21
Alignment explanation
Indices: 60936698--60936742 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
60936688 ATACATGAGT
*
60936698 GTTTAATGATAGATTATAAAA
1 GTTTGATGATAGATTATAAAA
*
60936719 GTTTGATGATAG-TTATAGAA
1 GTTTGATGATAGATTATAAAA
60936739 GTTT
1 GTTT
60936743 TGTTAAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (21 bp):
GTTTGATGATAGATTATAAAA
Found at i:60940948 original size:13 final size:13
Alignment explanation
Indices: 60940930--60940955 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60940920 ATGGTCGAAC
60940930 AACACGCCCATGG
1 AACACGCCCATGG
60940943 AACACGCCCATGG
1 AACACGCCCATGG
60940956 GGCTGACCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AACACGCCCATGG
Found at i:60942707 original size:16 final size:16
Alignment explanation
Indices: 60942688--60942719 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60942678 AATTATTTTA
60942688 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
60942704 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
60942720 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:60942956 original size:26 final size:26
Alignment explanation
Indices: 60942924--60943006 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
60942914 AGCTCTCTGG
60942924 TACACATAGTAGCCTACACTTAGTAC
1 TACACATAGTAGCCTACACTTAGTAC
* * *
60942950 TACACAT-G-CGACCTATCAATCT-G--G
1 TACACATAGTAG-CCTA-CACT-TAGTAC
*
60942974 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTACACTTAGTAC
60943000 TACACAT
1 TACACAT
60943007 GTGACTTAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 16
0.65 0.11 0.25
Matches are distributed among these distances:
23 1 0.02
24 12 0.29
25 9 0.21
26 19 0.45
27 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (26 bp):
TACACATAGTAGCCTACACTTAGTAC
Found at i:60942994 original size:50 final size:50
Alignment explanation
Indices: 60942919--60943212 Score: 356
Period size: 50 Copynumber: 5.9 Consensus size: 50
60942909 ACCGAAGCTC
* *
60942919 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
60942969 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** *
60943019 TCTGATAGACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* *
60943071 -CAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** * * * *
60943120 TCTAGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
60943170 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
60943213 TTACAACAGA
Statistics
Matches: 208, Mismatches: 33, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
49 3 0.01
50 166 0.80
51 38 0.18
52 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:60943116 original size:151 final size:151
Alignment explanation
Indices: 60942922--60943211 Score: 499
Period size: 151 Copynumber: 1.9 Consensus size: 151
60942912 GAAGCTCTCT
*
60942922 GGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTACACATAGTAGC
* *
60942987 CTGCACTTAGTACTACACATGTGACTTAACCATCTGATAGACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
*
60943052 CACATGTGATCAAAGTTAACA
131 CACACGTGATCAAAGTTAACA
* * * **
60943073 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTACATGTAGTAGC
1 GGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTACACATAGTAGC
60943138 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
60943203 CACACGTGA
131 CACACGTGA
60943212 CTTACAACAG
Statistics
Matches: 130, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 130 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GGTACACATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTAGTACACATAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CACACGTGATCAAAGTTAACA
Found at i:60943588 original size:19 final size:20
Alignment explanation
Indices: 60943560--60943606 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
60943550 AAGAACATGT
60943560 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
60943581 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
60943600 TATATAT
1 TATATAT
60943607 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:60946187 original size:15 final size:15
Alignment explanation
Indices: 60946167--60946205 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
60946157 AACCAGGATC
60946167 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
60946182 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
60946197 TCCAAGATA
1 TCCAAGATA
60946206 CAATATCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:60949602 original size:50 final size:50
Alignment explanation
Indices: 60949379--60949772 Score: 373
Period size: 50 Copynumber: 7.9 Consensus size: 50
60949369 ACCGAAGCTC
* * *
60949379 TCTGGTACGCATAGTAACCTGCACTTAGTACTAAACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** * * * * *
60949429 TCTAGTACATGTAGTAGCCTGCA-TTAGTACTAGACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * ** *
60949478 TCTGATACCCGTAGTAGCATGCACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
60949530 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
60949579 TCTGGTACACATAGTAGCCTGCACTTAGTACTAAACACGTG-CCTTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-TATCAA
* ** * * ** *
60949629 TCTGATACATGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
60949681 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
60949730 TCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
60949773 TCACAATGAA
Statistics
Matches: 272, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
49 47 0.17
50 150 0.55
51 71 0.26
52 4 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:60949678 original size:151 final size:150
Alignment explanation
Indices: 60949382--60949773 Score: 622
Period size: 151 Copynumber: 2.6 Consensus size: 150
60949372 GAAGCTCTCT
* * * * *
60949382 GGTACGCATAGTAACCTGCACTTAGTACTAAACATGTGACCTATCAATCTAGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
60949447 CTGCATTAGTACTAGACACGTGACTTAACCATCTGATACCCGTAGTAGCATGCACTTAGTACTAC
66 CTGCATTAGTACTAAACACGTGACTTAACAATCTGATACACGTAGTAACATGCACTTAGTACTAC
*
60949512 ACATGTGATCAAAGTTAACG
131 ACACGTGATCAAAGTTAACG
*
60949532 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
60949597 CTGCACTTAGTACTAAACACGTGCCTTAACAATCTGATACATGTAGTAACCTGCACTTAGTACTA
66 CTGCA-TTAGTACTAAACACGTGACTTAACAATCTGATACACGTAGTAACATGCACTTAGTACTA
*
60949662 CACACGTGATCGAAGTTAACG
130 CACACGTGATCAAAGTTAACG
60949683 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
60949748 CTGCATTTAGTACTACACACGTGACT
66 CTGCA-TTAGTACTAAACACGTGACT
60949774 CACAATGAAT
Statistics
Matches: 222, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
150 64 0.29
151 158 0.71
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCATTAGTACTAAACACGTGACTTAACAATCTGATACACGTAGTAACATGCACTTAGTACTAC
ACACGTGATCAAAGTTAACG
Found at i:60949769 original size:101 final size:99
Alignment explanation
Indices: 60949380--60949772 Score: 405
Period size: 101 Copynumber: 3.9 Consensus size: 99
60949370 CCGAAGCTCT
* * *
60949380 CTGGTACGCATAGTAACCTGCACTTAGTACTAAACATGTGACCTATCAATCTAGTACATGTAGTA
1 CTGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGTGACCTATCAATCTGGTACACGTAGTA
* * * *
60949445 GCCTGCA-TTAGTACTAGACACGTGACTTAACCAT
66 GCCTGCACTTAGTACTACACACGTGAC-CAATCAA
* * * * * ** * * * *
60949479 CTGATACCCGTAGTAGCATGCACTTAGTACTACACATGTGATCAAAGTTAA-CGGGTACGCATAG
1 CTGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGTGA-CCTA-TCAATCTGGTACACGTAG
* * *
60949543 TAGCCTGCACTTAGTACTACACATGCGACCTATCAA
64 TAGCCTGCACTTAGTACTACACACGTGACCAATCAA
* * * * *
60949579 TCTGGTACACATAGTAGCCTGCACTTAGTACTAAACACGTG-CCTTAACAATCTGATACATGTAG
1 -CTGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGTGACC-TATCAATCTGGTACACGTAG
* * *
60949643 TAACCTGCACTTAGTACTACACACGTGATCGAAGTTAA
64 TAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAA
* * *
60949681 CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTA
1 CTGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGTGACCTATCAATCTGGTACACGTAGTA
*
60949746 GCCTGCATTTAGTACTACACACGTGAC
66 GCCTGCACTTAGTACTACACACGTGAC
60949773 TCACAATGAA
Statistics
Matches: 233, Mismatches: 52, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
99 38 0.16
100 57 0.24
101 133 0.57
102 5 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (99 bp):
CTGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGTGACCTATCAATCTGGTACACGTAGTA
GCCTGCACTTAGTACTACACACGTGACCAATCAA
Found at i:60950147 original size:20 final size:20
Alignment explanation
Indices: 60950116--60950162 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
60950106 AAGAACATGT
60950116 TATATCATCAAAATAATCATA
1 TATAT-ATCAAAATAATCATA
* *
60950137 TATATATCAAATTATTCATA
1 TATATATCAAAATAATCATA
60950157 TATATA
1 TATATA
60950163 AACTTATAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (20 bp):
TATATATCAAAATAATCATA
Found at i:60952310 original size:46 final size:46
Alignment explanation
Indices: 60952201--60952372 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
60952191 TCAACAAGCT
* * * * * *
60952201 GATGCCATGTCTCAGACAGGTCTTACACTAGCTTGTCTATCTCGAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGC-TCTC-ATCTCAATGCC
60952250 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
* * *
60952296 GATGCATGTTCCAGACATGTCTTACACTGGCTCTCA--T-AATGTGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA--T-GCC
60952342 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
60952373 ACACATATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 1 0.01
46 73 0.67
47 3 0.03
48 25 0.23
49 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
Found at i:60955001 original size:14 final size:16
Alignment explanation
Indices: 60954978--60955009 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
60954968 AGATTCACAT
60954978 ACCAAGATATAA-TCA
1 ACCAAGATATAATTCA
60954993 ACCAA-ATATAATTCA
1 ACCAAGATATAATTCA
60955008 AC
1 AC
60955010 TTATCATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.53, C:0.22, G:0.03, T:0.22
Consensus pattern (16 bp):
ACCAAGATATAATTCA
Found at i:60958128 original size:45 final size:45
Alignment explanation
Indices: 60958042--60958154 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
60958032 CAGCATTTCA
* *
60958042 CCTGTTAGGCTCG-AGGCCCG-ATATCAGTCCACTGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATATCAGTCCACCGGCATTATAG
60958085 CCTGCTAGGCTCGAAGGCCCGAATAGT-A-TCTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATA-TCAGTC-CACCGGCATTATAG
** * *
60958130 TTTGCTAAGCTCAAAGGCCCGAATA
1 CCTGCTAGGCTCGAAGGCCCGAATA
60958155 ATCAAGTCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
43 12 0.20
44 9 0.15
45 38 0.63
46 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (45 bp):
CCTGCTAGGCTCGAAGGCCCGAATATCAGTCCACCGGCATTATAG
Found at i:60958532 original size:43 final size:43
Alignment explanation
Indices: 60958484--60958638 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
60958474 CCGGCATTAC
60958484 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
60958527 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
60958570 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
60958613 GCCTGCTAAGCACAAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
60958639 TAATACCAGC
Statistics
Matches: 107, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 107 1.00
ACGTcount: A:0.32, C:0.34, G:0.24, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:60958685 original size:38 final size:38
Alignment explanation
Indices: 60958631--60958714 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
60958621 AGCACAAAGG
* * *
60958631 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
60958669 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
60958707 CCCGAATA
1 CCCGAATA
60958715 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:60961748 original size:20 final size:20
Alignment explanation
Indices: 60961710--60961763 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
60961700 TTACTCATGT
*
60961710 TTTCCCTCCTTTGTTCCCTTA
1 TTTCCCTTCTTT-TTCCCTTA
* *
60961731 TTTTCCTTCTTTTTCCCTTG
1 TTTCCCTTCTTTTTCCCTTA
*
60961751 TTTCCCTTGTTTT
1 TTTCCCTTCTTTT
60961764 CTTTTTCCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.02, C:0.31, G:0.06, T:0.61
Consensus pattern (20 bp):
TTTCCCTTCTTTTTCCCTTA
Found at i:60963145 original size:40 final size:40
Alignment explanation
Indices: 60963089--60963264 Score: 133
Period size: 40 Copynumber: 4.4 Consensus size: 40
60963079 CTGCAACACC
* *
60963089 GGTGGCTTGTCTACAATACTGACAGCTTGTCTGTAATATT
1 GGTGGCTTGTCCACAATACTGACAGTTTGTCTGTAATATT
* * * * *
60963129 GGTGGCTTGTCCACAATATTGGCAGTTTGT-TCATAACACT
1 GGTGGCTTGTCCACAATACTGACAGTTTGTCT-GTAATATT
* * * * * *
60963169 AGTGGCTTGTCCATAATACT-AGCAGTTTATCAGCATTATT
1 GGTGGCTTGTCCACAATACTGA-CAGTTTGTCTGTAATATT
* * *
60963209 GGTGGCTTGTCCACAATACT-AGCAATTTATCTGCAATATT
1 GGTGGCTTGTCCACAATACTGA-CAGTTTGTCTGTAATATT
* * *
60963249 GATGGGTTTTCCACAA
1 GGTGGCTTGTCCACAA
60963265 ACTAGTGTGT
Statistics
Matches: 107, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (40 bp):
GGTGGCTTGTCCACAATACTGACAGTTTGTCTGTAATATT
Found at i:60963953 original size:27 final size:27
Alignment explanation
Indices: 60963913--60964310 Score: 329
Period size: 27 Copynumber: 14.9 Consensus size: 27
60963903 TAAATTTTAA
* *
60963913 AAAATGACTG-TTTTTCCCTTATGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
*
60963940 AAAATGATGATTTTGCCCTTATGTGAT
1 AAAATGATGATTTTGCCCTTATGTGGT
* *
60963967 AAAATGACGATTTTGCCCTTATGTGGC
1 AAAATGATGATTTTGCCCTTATGTGGT
* *
60963994 AAAGTGACTG-TTTT-CCC-T-TGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
** *
60964018 AAAATGACAATTTTTCCCTTATGTGGT
1 AAAATGATGATTTTGCCCTTATGTGGT
* * *
60964045 AAAATGA-CAGTTTTGCCTTTATGTGGC
1 AAAATGATGA-TTTTGCCCTTATGTGGT
* *
60964072 AAATTGATTG-TTTTGCCCTTATGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* * * * *
60964099 AAAATAACGATTTTTCCATTATGTGGC
1 AAAATGATGATTTTGCCCTTATGTGGT
*
60964126 AAAATGACT-ATTTTGCCC-T-TGTGTT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* *
60964151 AAAATGACAGGTTTT-CCCTTATGTGGT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
* *
60964178 AAAATGACGGTTTTGCCCTTATGTGGT
1 AAAATGATGATTTTGCCCTTATGTGGT
*
60964205 AAAATGA-CAGTTTTGCCCTTATGTGGT
1 AAAATGATGA-TTTTGCCCTTATGTGGT
* **
60964232 AAAATGACGATTTTGCCCTTATAAGGT
1 AAAATGATGATTTTGCCCTTATGTGGT
60964259 AAAATGACT-ATTTTGCCCTTATGTGGT
1 AAAATGA-TGATTTTGCCCTTATGTGGT
** *
60964286 AGGATAACTG-TTTTGCCCTTATGTG
1 AAAATGA-TGATTTTGCCCTTATGTG
60964311 ATGTATGTTT
Statistics
Matches: 302, Mismatches: 50, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
24 14 0.05
25 19 0.06
26 20 0.07
27 247 0.82
28 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (27 bp):
AAAATGATGATTTTGCCCTTATGTGGT
Found at i:60964102 original size:54 final size:54
Alignment explanation
Indices: 60963913--60964310 Score: 413
Period size: 54 Copynumber: 7.5 Consensus size: 54
60963903 TAAATTTTAA
* * * *
60963913 AAAATGACTGTTTTTCCCTTATGTGTTAAAATGA-TGATTTTGCCCTTATGTGAT
1 AAAATGACTGTTTTGCCCTTATGTGGTAAAATGACAG-TTTTGCCCTTATGTGGT
* * * *
60963967 AAAATGAC-GATTTTGCCCTTATGTGGCAAAGTGACTGTTTT-CCC-T-TGTGTT
1 AAAATGACTG-TTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGTGGT
** * * *
60964018 AAAATGACAATTTTTCCCTTATGTGGTAAAATGACAGTTTTGCCTTTATGTGGC
1 AAAATGACTGTTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGTGGT
* * * * * * *
60964072 AAATTGATTGTTTTGCCCTTATGTGTTAAAATAAC-GATTTTTCCATTATGTGGC
1 AAAATGACTGTTTTGCCCTTATGTGGTAAAATGACAG-TTTTGCCCTTATGTGGT
* *
60964126 AAAATGACTATTTTGCCC-T-TGTGTTAAAATGACAGGTTTT-CCCTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGTAAAATGACA-GTTTTGCCCTTATGTGGT
*
60964178 AAAATGACGGTTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGTGGT
1 AAAATGACTGTTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGTGGT
**
60964232 AAAATGAC-GATTTTGCCCTTATAAGGTAAAATGACTA-TTTTGCCCTTATGTGGT
1 AAAATGACTG-TTTTGCCCTTATGTGGTAAAATGAC-AGTTTTGCCCTTATGTGGT
** *
60964286 AGGATAACTGTTTTGCCCTTATGTG
1 AAAATGACTGTTTTGCCCTTATGTG
60964311 ATGTATGTTT
Statistics
Matches: 291, Mismatches: 38, Indels: 30
0.81 0.11 0.08
Matches are distributed among these distances:
51 40 0.14
52 42 0.14
53 18 0.06
54 187 0.64
55 4 0.01
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (54 bp):
AAAATGACTGTTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGTGGT
Found at i:60964200 original size:133 final size:132
Alignment explanation
Indices: 60963913--60964278 Score: 518
Period size: 133 Copynumber: 2.8 Consensus size: 132
60963903 TAAATTTTAA
* * *
60963913 AAAATGACTGTTTTTCCCTTATGTGTTAAAATGATGATTTTGCCCTTATGTGATAAAATGACGAT
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGATG-TTTTGCCCTTATGTGATAAAATGACGAT
* * *
60963978 TTTGCCCTTATGTGGCAAAGTGACTGTTTT-CCCTTGTGTTAAAATGACAATTTTTCCCTTATGT
65 TTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAAGTTTTCCCTTATGT
60964042 GGT
130 GGT
* * * * *
60964045 AAAATGACAGTTTTGCCTTTATGTGGCAAATTGATTGTTTTGCCCTTATGTGTTAAAATAACGAT
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGA-TGTTTTGCCCTTATGTGATAAAATGACGAT
* * *
60964110 TTTTCCATTATGTGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAGGTTTTCCCTTATGT
65 TTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAAGTTTTCCCTTATGT
60964175 GGT
130 GGT
* * *
60964178 AAAATGACGGTTTTGCCCTTATGTGGTAAAATGACAGTTTTGCCCTTATGTGGTAAAATGACGAT
1 AAAATGACAGTTTTGCCCTTATGTGGTAAAATGA-TGTTTTGCCCTTATGTGATAAAATGACGAT
** *
60964243 TTTGCCCTTATAAGGTAAAATGACTATTTTGCCCTT
65 TTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTT
60964279 ATGTGGTAGG
Statistics
Matches: 205, Mismatches: 27, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
132 80 0.39
133 125 0.61
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (132 bp):
AAAATGACAGTTTTGCCCTTATGTGGTAAAATGATGTTTTGCCCTTATGTGATAAAATGACGATT
TTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTGTGTTAAAATGACAAGTTTTCCCTTATGTG
GT
Found at i:60966094 original size:200 final size:211
Alignment explanation
Indices: 60965730--60966119 Score: 518
Period size: 211 Copynumber: 1.9 Consensus size: 211
60965720 GTTGAAGTAA
*
60965730 ACAACAACATTATAATAAAAAAAACATGAGAAAAAGTTCAAAATACAATAGAAACCTACACCACT
1 ACAACAACATTATAATAAAAAAAACATAAGAAAAAGTTCAAAATACAATAGAAACCTACACCACT
* * *
60965795 CCAAACAAACAAAAAAAAAGAATACAACAAAAGTTCAATTAACCAACAATAATAACAAACCAAAC
66 CC--ACAAACAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAAC
*
60965860 CAAACTAATAACAATAACACATCAGTTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAG
129 C--AC-AATAAC-A-AACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAG
60965925 TCCAAATAAACAACAAAAACAAT
189 TCCAAATAAACAACAAAAACAAT
* *
60965948 ACAACAACATTGTAAT-AAAAAAACATAAGCAAAAG-TCTAAAATACAATA-AAAGCCTACACCA
1 ACAACAACATTATAATAAAAAAAACATAAGAAAAAGTTC-AAAATACAATAGAAA-CCTACACCA
* *
60966010 GT-C-C-AA-AAAAAAAAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAACCAAA-
64 CTCCACAAACAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAAC
*
60966070 C-C-A-AAC-GA-ACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
129 CACAATAACAAACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
60966120 TTGTGCTTCA
Statistics
Matches: 160, Mismatches: 10, Indels: 22
0.83 0.05 0.11
Matches are distributed among these distances:
200 41 0.26
201 1 0.01
204 3 0.02
205 1 0.01
207 1 0.01
210 1 0.01
211 50 0.31
212 2 0.01
213 1 0.01
216 6 0.04
217 38 0.24
218 15 0.09
ACGTcount: A:0.56, C:0.20, G:0.06, T:0.18
Consensus pattern (211 bp):
ACAACAACATTATAATAAAAAAAACATAAGAAAAAGTTCAAAATACAATAGAAACCTACACCACT
CCACAAACAAAAAAAAAGAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCA
CAATAACAAACACATCAGTTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAAT
AAACAACAAAAACAAT
Found at i:60972815 original size:27 final size:27
Alignment explanation
Indices: 60972785--60973024 Score: 367
Period size: 27 Copynumber: 8.9 Consensus size: 27
60972775 ACAATGACCA
60972785 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
60972812 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
*
60972839 AAATA-CCCCATAAGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
60972865 GAATACCCCCATAGGGTAAAATGACCGG
1 AAATACCCCCATAGGGTAAAATGA-CTG
60972893 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
60972920 AAATACCCCCATAGGATAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
60972947 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
**
60972974 AAATACCCCTGTAGGGTAAAATGACT-
1 AAATACCCCCATAGGGTAAAATGACTG
* *
60973000 ATAATACCCCGATAAGGTAAAATGA
1 A-AATACCCCCATAGGGTAAAATGA
60973025 TTGTTTTGCC
Statistics
Matches: 195, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
26 24 0.12
27 146 0.75
28 25 0.13
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:60973344 original size:27 final size:27
Alignment explanation
Indices: 60973015--60973338 Score: 308
Period size: 27 Copynumber: 12.1 Consensus size: 27
60973005 ACCCCGATAA
* *
60973015 GGTAAAATGATTGTTTTGCCC-T-TGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
60973040 GTTAAAATGACAATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
60973067 GGCAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
60973094 GTTAAAATGA-TAGTTTTGCCCTTATGT
1 GGTAAAATGACTA-TTTTGCCCTTATGT
* *
60973121 GGCAAAATGA-TAATTTTGCCCTTATAT
1 GGTAAAATGACT-ATTTTGCCCTTATGT
* **
60973148 GATAAAATGA-TAGTTTTGCCCTTAAAT
1 GGTAAAATGACTA-TTTTGCCCTTATGT
*
60973175 GG-AAAAGTGACTGTTTTGCCC-T-TGT
1 GGTAAAA-TGACTATTTTGCCCTTATGT
* *
60973200 GTTAAAATGA-TGATTTTTCCCTTATGT
1 GGTAAAATGACT-ATTTTGCCCTTATGT
* * *
60973227 GATAAAGTGA-TGATTTTTCCCTTATGT
1 GGTAAAATGACT-ATTTTGCCCTTATGT
* * * *
60973254 GGAAAAAGGACTGTTTTGCCATTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* * *
60973281 GGTAAAATGACGATTTTTCCCTTATGA
1 GGTAAAATGACTATTTTGCCCTTATGT
60973308 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
60973335 GGTA
1 GGTA
60973339 GGATGATTGT
Statistics
Matches: 246, Mismatches: 41, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
24 1 0.00
25 29 0.12
26 14 0.06
27 199 0.81
28 3 0.01
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:60973352 original size:160 final size:159
Alignment explanation
Indices: 60973018--60973361 Score: 408
Period size: 160 Copynumber: 2.2 Consensus size: 159
60973008 CCGATAAGGT
*
60973018 AAAATGATTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGGCAAAATGACTATTT
1 AAAATGATTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGACTATTT
** * * *
60973083 TGCCCTTATGTGTTAAAATGATAGTTTTGCCCTTATGTGGCAAAATGATAATTTTGCCCTTATAT
66 TGCCCTTATGTGGAAAAAGGATAGTTTTGCCATTATGTGGCAAAATGACAATTTTGCCCTTATAT
60973148 GATAAAATGATAGTTTTGCCCTTAAATGG
131 GATAAAATGATAGTTTTGCCCTTAAATGG
* ** * * *
60973177 AAAAGTGACTGTTTTGCCCTTGTGTTAAAATGATGATTTTTCCCTTATGTGATAAAGTGA-TGAT
1 AAAA-TGATTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGACT-AT
* * * *
60973241 TTTTCCCTTATGTGGAAAAAGGACT-GTTTTGCCATTATGTGGTAAAATGACGATTTTTCCCTTA
64 TTTGCCCTTATGTGGAAAAAGGA-TAGTTTTGCCATTATGTGGCAAAATGACAATTTTGCCCTTA
* **
60973305 TGA-GGTAAAATGACTA-TTTTGCCCTTATGTGG
128 T-ATGATAAAATGA-TAGTTTTGCCCTTAAATGG
** *
60973337 TAGGATGATTGTTTTGCCCCTGTGT
1 -AAAATGATTGTTTTGCCCTTGTGT
60973362 GATGTATGTT
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
159 5 0.03
160 145 0.93
161 6 0.04
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (159 bp):
AAAATGATTGTTTTGCCCTTGTGTTAAAATGACAATTTTGCCCTTATGTGACAAAATGACTATTT
TGCCCTTATGTGGAAAAAGGATAGTTTTGCCATTATGTGGCAAAATGACAATTTTGCCCTTATAT
GATAAAATGATAGTTTTGCCCTTAAATGG
Found at i:60980618 original size:40 final size:40
Alignment explanation
Indices: 60980581--60980674 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 40
60980571 GCTACTCGTT
*
60980581 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
60980621 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
60980661 CAAATGCCTTCGGG
1 CAAATGCCTTCGGG
60980675 CTTAATTAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:60980742 original size:72 final size:73
Alignment explanation
Indices: 60980609--60980751 Score: 175
Period size: 72 Copynumber: 2.0 Consensus size: 73
60980599 AGCCCGGTTA
* * *
60980609 TAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGG
60980674 G-CTTAAT
66 GACTTAAT
* ** * *
60980681 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAATGCCTTC
60980744 GGGACTTA
64 GGGACTTA
60980752 GCCCGGACAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
71 3 0.05
72 45 0.75
73 12 0.20
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (73 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCGG
GACTTAAT
Found at i:60988568 original size:79 final size:81
Alignment explanation
Indices: 60988444--60988627 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
60988434 GCTACTCGTT
* *
60988444 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
60988507 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
60988523 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
60988586 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
60988603 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60988628 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:60988627 original size:40 final size:40
Alignment explanation
Indices: 60988425--60988627 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
60988415 CGGAATTTAA
** *
60988425 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60988465 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60988504 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60988543 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60988583 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60988623 CCGGA
1 CCGGA
60988628 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:61001043 original size:40 final size:40
Alignment explanation
Indices: 61000971--61001194 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
61000961 AAACCAAGTA
* * *
61000971 CCTTCGGGATTTAG-CTGGATATCG-AACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61001009 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
61001049 CCTTCGAGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61001089 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
61001132 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61001172 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
61001195 CATCCGAATA
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
38 12 0.08
39 8 0.05
40 102 0.64
42 1 0.01
43 36 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:61001157 original size:83 final size:80
Alignment explanation
Indices: 61000995--61001194 Score: 283
Period size: 83 Copynumber: 2.5 Consensus size: 80
61000985 CTGGATATCG
* * * * *
61000995 AACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATGCCTTCGAGTCT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGAGACT
61001060 TAGCCCGGAAATAGT
66 TAGCCCGGAAATAGT
* * *
61001075 CACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGG
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGAG
*
61001140 ACTTAGCCCGGATATAGT
63 ACTTAGCCCGGAAATAGT
*
61001158 AACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
61001195 CATCCGAATA
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
80 35 0.33
81 1 0.01
83 69 0.66
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGAGACT
TAGCCCGGAAATAGT
Found at i:61005121 original size:44 final size:42
Alignment explanation
Indices: 61005058--61005212 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 42
61005048 ATGTGTTTTT
*
61005058 GTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTCT-ATTTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGTA--TCTGA-TTT-C
* *
61005102 GTGTAAGACCATGTCTGGGACATTGACATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGTATCTGATTTC
* * * * * *
61005144 GTGTAAGACCCTGTATGGGACAG-TGGCATCAATGTTTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATC-GTATCTGATTTC
* * *
61005187 ATGTAAGACCACGTCTGGGACATTGG
1 GTGTAAGACCATGTCTGGGACGTTGG
61005213 AATTGTATAA
Statistics
Matches: 90, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.29
43 34 0.38
44 29 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGTATCTGATTTC
Found at i:61005206 original size:43 final size:42
Alignment explanation
Indices: 61005058--61005208 Score: 121
Period size: 42 Copynumber: 3.5 Consensus size: 42
61005048 ATGTGTTTTT
* *
61005058 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGACTTCTAT-TTTAC
1 GTGTAAGACCACGTCTGGGACAG-TGGCATC-AATT-T-TGATTAC
* * * * * *
61005102 GTGTAAGACCATGTCTGGGACATTGACATC-GTATCTGATTTC
1 GTGTAAGACCACGTCTGGGACAGTGGCATCAAT-TTTGATTAC
*
61005144 GTGTAAGACC-CTGTATGGGACAGTGGCATCAATGTTTGATTAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCAAT-TTTGATTAC
*
61005187 ATGTAAGACCACGTCTGGGACA
1 GTGTAAGACCACGTCTGGGACA
61005209 TTGGAATTGT
Statistics
Matches: 84, Mismatches: 17, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.35
43 27 0.32
44 27 0.32
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCAATTTTGATTAC
Found at i:61008020 original size:37 final size:37
Alignment explanation
Indices: 61007960--61008037 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
61007950 TTCCAACTAA
* * * * *
61007960 AACATGCCAGATGCTCATAAGAGCTAATCCACTCGAT
1 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
61007997 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
1 AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
61008034 AACA
1 AACA
61008038 TGTCAATTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.40, C:0.31, G:0.13, T:0.17
Consensus pattern (37 bp):
AACACGCCAAATGCTCATAAGAGCCAATCCACCCAAT
Found at i:61013792 original size:17 final size:17
Alignment explanation
Indices: 61013767--61013800 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
61013757 TATGTATGCA
*
61013767 GTGAAATCTATGTTTTG
1 GTGAAATCTATGGTTTG
*
61013784 GTGAGATCTATGGTTTG
1 GTGAAATCTATGGTTTG
61013801 ACGGATTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.06, G:0.29, T:0.44
Consensus pattern (17 bp):
GTGAAATCTATGGTTTG
Found at i:61017966 original size:42 final size:42
Alignment explanation
Indices: 61017850--61018008 Score: 176
Period size: 42 Copynumber: 3.8 Consensus size: 42
61017840 CGTACCAATG
* * * *
61017850 CCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATG
1 CCATATACCAGATATGGTCTTACACGTAGTCTCGTATCGATT
* * *
61017892 CCA-ATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCGATT
1 CCATATA--CCAGATATGGTCTTACACGTAGTCTCGTATCGATT
* * * * *
61017935 TCATATACCAAATATGGTTTTACATGTAGTCTCGTATTGATT
1 CCATATACCAGATATGGTCTTACACGTAGTCTCGTATCGATT
*
61017977 CCATATCCCAGATATGGTCTTACACGTAGTCT
1 CCATATACCAGATATGGTCTTACACGTAGTCT
61018009 TAGTAACCCT
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.02
42 58 0.62
43 31 0.33
44 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (42 bp):
CCATATACCAGATATGGTCTTACACGTAGTCTCGTATCGATT
Found at i:61017971 original size:85 final size:84
Alignment explanation
Indices: 61017851--61018008 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
61017841 GTACCAATGC
* * *
61017851 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCCAGCTATGGTCTTAC
1 CATATACCAAATATGGTCTTACATGTAATCTCGTATCGATGCC-ATAGCCCAGATATGGTCTTAC
61017916 ACGAAGTCTCATATCGATTT
65 ACGAAGTCTCATATCGATTT
* * * * *
61017936 CATATACCAAATATGGTTTTACATGTAGTCTCGTATTGATTCCATATCCCAGATATGGTCTTACA
1 CATATACCAAATATGGTCTTACATGTAATCTCGTATCGATGCCATAGCCCAGATATGGTCTTACA
*
61018001 CGTAGTCT
66 CGAAGTCT
61018009 TAGTAACCCT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 27 0.42
85 37 0.58
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (84 bp):
CATATACCAAATATGGTCTTACATGTAATCTCGTATCGATGCCATAGCCCAGATATGGTCTTACA
CGAAGTCTCATATCGATTT
Found at i:61019687 original size:25 final size:23
Alignment explanation
Indices: 61019633--61019692 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
61019623 AAAGAAAATT
* *
61019633 CTAAATTTTATAGGATATATGTG
1 CTAAATTTTATAGAACATATGTG
*
61019656 CTGAATTTTATAGAACATATGTG
1 CTAAATTTTATAGAACATATGTG
61019679 CGGTAAATTTTATA
1 C--TAAATTTTATA
61019693 TTGAAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 21 0.68
25 10 0.32
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (23 bp):
CTAAATTTTATAGAACATATGTG
Found at i:61024516 original size:47 final size:47
Alignment explanation
Indices: 61024409--61025022 Score: 908
Period size: 47 Copynumber: 13.1 Consensus size: 47
61024399 GAAATGATAG
61024409 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
61024458 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61024505 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
61024554 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
61024603 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61024650 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
61024697 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
61024744 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
61024793 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
61024840 TAAGGCCTAATGGCCGA--TG-TG-A--TG-AA-TG--T-TACGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
61024876 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
61024925 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
61024972 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
61025019 TAAG
1 TAAG
61025023 TCCCGAAGGG
Statistics
Matches: 526, Mismatches: 22, Indels: 36
0.90 0.04 0.06
Matches are distributed among these distances:
36 23 0.04
37 1 0.00
38 2 0.00
39 4 0.01
40 3 0.01
41 2 0.00
42 2 0.00
43 3 0.01
44 4 0.01
45 2 0.00
47 263 0.50
48 1 0.00
49 216 0.41
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:61024573 original size:96 final size:96
Alignment explanation
Indices: 61024409--61025022 Score: 915
Period size: 96 Copynumber: 6.6 Consensus size: 96
61024399 GAAATGATAG
*
61024409 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
61024474 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
61024505 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
61024570 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
61024603 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
61024666 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
61024697 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
61024760 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
61024793 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
61024856 A--TG-TG-A--TG-AA-TG--T-TACGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
61024876 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
61024941 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
61024972 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
61025023 TCCCGAAGGG
Statistics
Matches: 477, Mismatches: 24, Indels: 36
0.89 0.04 0.07
Matches are distributed among these distances:
83 41 0.09
84 1 0.00
85 26 0.05
87 2 0.00
88 4 0.01
89 3 0.01
90 2 0.00
91 2 0.00
92 3 0.01
93 4 0.01
94 102 0.21
95 2 0.00
96 239 0.50
98 46 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:61024879 original size:36 final size:36
Alignment explanation
Indices: 61024833--61024904 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
61024823 AAAGTGTATA
*
61024833 TACGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 TACGAGATAAGGCCTAATGGCCGATGTGATGAATGT
61024869 TACGAGATAAGGCCTAATGGCCGATGTGATGAATGT
1 TACGAGATAAGGCCTAATGGCCGATGTGATGAATGT
61024905 GAAAGTGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (36 bp):
TACGAGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:61024891 original size:83 final size:84
Alignment explanation
Indices: 61024791--61024953 Score: 292
Period size: 83 Copynumber: 1.9 Consensus size: 84
61024781 ATATATATGT
61024791 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATACGTGATAAGGCCTAATGGCC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCCTAATGGCC
61024855 GATGTGATGAATGTTACGA
66 GATGTGATGAATGTTACGA
* *
61024874 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATACGTGATAAGGCCTAATGGC
61024939 CGATGTGATGAATGT
65 CGATGTGATGAATGT
61024954 GAAAGTGTAT
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
83 38 0.50
85 38 0.50
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (84 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCCTAATGGCC
GATGTGATGAATGTTACGA
Found at i:61025197 original size:37 final size:37
Alignment explanation
Indices: 61025141--61025219 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61025131 CCGAGCTCTA
* * *
61025141 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
61025178 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
61025215 AAGAC
1 AAGAC
61025220 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:61027130 original size:43 final size:43
Alignment explanation
Indices: 61027082--61027180 Score: 198
Period size: 43 Copynumber: 2.3 Consensus size: 43
61027072 TTGGTTTTCA
61027082 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61027125 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61027168 GCACTAAGTGTGC
1 GCACTAAGTGTGC
61027181 AGGCTTGAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:61027201 original size:29 final size:29
Alignment explanation
Indices: 61027166--61027239 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
61027156 GTTGTGAGAT
*
61027166 TGGCACTAAGTGTGC-AGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGA-G-TTGAAAGTACA
*
61027195 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61027224 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61027240 TGGATGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 5 0.12
29 35 0.85
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61027649 original size:39 final size:40
Alignment explanation
Indices: 61027548--61027731 Score: 155
Period size: 40 Copynumber: 4.6 Consensus size: 40
61027538 TCGAATGATG
* * * *
61027548 TCCGGGCTAAGTCCCGAAGTC-TTGGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTAAA
* * *
61027588 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGATACTAAA
*
61027628 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
** * **
61027667 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG-TGA-TGTA
1 TCCGGGCTAAGTCCCGAAG-GCATTGGTGCGAGAT-ACTAAA
61027707 TCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
61027732 CATGCTAGTG
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 35 0.29
40 65 0.54
41 20 0.17
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
Found at i:61027710 original size:40 final size:40
Alignment explanation
Indices: 61027628--61027862 Score: 285
Period size: 40 Copynumber: 5.9 Consensus size: 40
61027618 AGATACTAAT
** * * *
61027628 TCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
*
61027667 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
61027707 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
61027747 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
61027787 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
61027827 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
61027863 CGTGTATTCG
Statistics
Matches: 172, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 11 0.06
40 149 0.87
41 12 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Done.