Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 19 of 290
Found at i:6420417 original size:2 final size:2
Alignment explanation
Indices: 6420410--6420441 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6420400 TTTGGTCTTC
6420410 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6420442 CTTTTGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6433187 original size:115 final size:116
Alignment explanation
Indices: 6432954--6433170 Score: 303
Period size: 114 Copynumber: 1.9 Consensus size: 116
6432944 AAGGATATTC
* *
6432954 AAATACTTAAATCGAATAAAAAATGAAACCCAGTACGGTAGGGCACGTTTTTTTAAAACGATTAA
1 AAATACTTAAATCGAATAAAAAACGAAACCCAATACGGTAGGGCACGTTTTTTTAAAACGATTAA
** * * * *
6433019 GTATAGAAAATTGCCTTTATTAAAAATTATTTGGGAACAAAACGTTGAATA
66 GTATAGAAAATTGCCTTTATTAAAAACAAGTTGAGAACAAAACATGGAATA
*
6433070 AAATACTTAAATCGAATAAAAAACG-AACCCAATACGGTAGGGCATG-TTTTTTAAAACGATTAA
1 AAATACTTAAATCGAATAAAAAACGAAACCCAATACGGTAGGGCACGTTTTTTTAAAACGATTAA
** *
6433133 GTATAGAAAATTGTTTTTATGTTAAAACAAGTTGAGAA
66 GTATAGAAAATTGCCTTTAT-TAAAAACAAGTTGAGAA
6433171 TACATTATGG
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
114 35 0.39
115 31 0.34
116 24 0.27
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (116 bp):
AAATACTTAAATCGAATAAAAAACGAAACCCAATACGGTAGGGCACGTTTTTTTAAAACGATTAA
GTATAGAAAATTGCCTTTATTAAAAACAAGTTGAGAACAAAACATGGAATA
Found at i:6433205 original size:115 final size:116
Alignment explanation
Indices: 6432958--6433205 Score: 286
Period size: 115 Copynumber: 2.1 Consensus size: 116
6432948 ATATTCAAAT
* *
6432958 ACTTAAATCGAATAAAAAATGAAACCCAGTACGGTAGGGCACGTTTTTTTAAAACGATTAAGTAT
1 ACTTAAATCGAATAAAAAACGAAACCCAATACGGTAGGGCACGTTTTTTTAAAACGATTAAGTAT
** * * * * *
6433023 AGAAAATTGCCTTTATTAAAAATTATTTGGGAACAAAACGTTGAATAAAAT
66 AGAAAATTGCCTTTATTAAAAACAAGTTGAGAACAAAACATGGAATAAAAA
*
6433074 ACTTAAATCGAATAAAAAACG-AACCCAATACGGTAGGGCATG-TTTTTTAAAACGATTAAGTAT
1 ACTTAAATCGAATAAAAAACGAAACCCAATACGGTAGGGCACGTTTTTTTAAAACGATTAAGTAT
** * * * **
6433137 AGAAAATTGTTTTTATGTTAAAACAAGTTGAGAATACATTATGGAATAAAAGA
66 AGAAAATTGCCTTTAT-TAAAAACAAGTTGAGAACAAAACATGGAATAAAA-A
* *
6433190 AC-TAAAACGATTAAAA
1 ACTTAAATCGAATAAAA
6433206 TTTGGGGAGG
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
114 35 0.32
115 54 0.49
116 22 0.20
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (116 bp):
ACTTAAATCGAATAAAAAACGAAACCCAATACGGTAGGGCACGTTTTTTTAAAACGATTAAGTAT
AGAAAATTGCCTTTATTAAAAACAAGTTGAGAACAAAACATGGAATAAAAA
Found at i:6437406 original size:21 final size:20
Alignment explanation
Indices: 6437375--6437415 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
6437365 TTGCCATCTG
*
6437375 AAAATTAAAAAATGTATATA
1 AAAATTAAAAAATATATATA
*
6437395 AAAATCTAAAAACTATATATA
1 AAAAT-TAAAAAATATATATA
6437416 TTTTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAATTAAAAAATATATATA
Found at i:6438397 original size:10 final size:11
Alignment explanation
Indices: 6438368--6438401 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
6438358 TCAATCTTAA
*
6438368 TTCTCTTCTTT
1 TTCTCTTCTCT
6438379 TTCTCTTCTCT
1 TTCTCTTCTCT
6438390 TT-TCTTCTCT
1 TTCTCTTCTCT
6438400 TT
1 TT
6438402 GACTTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (11 bp):
TTCTCTTCTCT
Found at i:6440605 original size:30 final size:31
Alignment explanation
Indices: 6440571--6440632 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 31
6440561 AAAATCTAAG
6440571 ATTTAATCCT-TATATTTTACAAGTTAAAAA
1 ATTTAATCCTCTATATTTTACAAGTTAAAAA
* *
6440601 ATTTAATCCTCCTATTTTTTACAATTTAAAAA
1 ATTTAATCCT-CTATATTTTACAAGTTAAAAA
6440633 TCCTAATCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 10 0.36
32 18 0.64
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.45
Consensus pattern (31 bp):
ATTTAATCCTCTATATTTTACAAGTTAAAAA
Found at i:6444653 original size:41 final size:39
Alignment explanation
Indices: 6444577--6444867 Score: 278
Period size: 41 Copynumber: 7.2 Consensus size: 39
6444567 GCAAAAATTT
* *
6444577 TAAAATACAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGTTTT-AGTAAAACGCCGC
** * *
6444618 TAAAAACAGAGCAACAGCGGCGTATTTTACTAAAACGCCTC
1 TAAAAACAGAGCATTAGCGGCG--TTTTAGTAAAACGCCGC
* *
6444659 TAAAAACAGATCATTAGCGGCGCTTTAGGTAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGTTTTA-GTAAAACGCCGC
* ***
6444699 TAAAAACCAGATCATTAGCGGCGCTTCGGGTAAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCG-TTTTAGTAAAACGCCGC
**
6444740 TAAAAACTAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGC
1 TAAAAAC-AGAGCATTAGCGGCG-TTTTAGTAAAACGCCGC
* * * *
6444781 TAAAAACCGGAGCATTAGCGACGTTTTGTGTAAAAGGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGTTTT-AGTAAAACGCCGC
* *
6444822 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGC
1 TAAAAA-CAGAGCATTAGCGGCG-TTTTAGTAAAACGCCGC
6444863 -AAAAA
1 TAAAAA
6444868 GTCATAGAAC
Statistics
Matches: 215, Mismatches: 26, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
39 4 0.02
40 41 0.19
41 160 0.74
42 10 0.05
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (39 bp):
TAAAAACAGAGCATTAGCGGCGTTTTAGTAAAACGCCGC
Found at i:6444775 original size:82 final size:81
Alignment explanation
Indices: 6444577--6444867 Score: 316
Period size: 82 Copynumber: 3.6 Consensus size: 81
6444567 GCAAAAATTT
* * * * ** *
6444577 TAAAATACAGAGCAATAGCGGCGTTTTAAGAAAAACGCCGCTAAAAA-CAGAGCAACAGCGGCGT
1 TAAAA-ACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGACG-
* **** *
6444641 ATTTTACTAAAACGCCTC
64 CTTCGGGTAAAACGCCGC
* * *
6444659 TAAAAACAGATCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCT
1 TAAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGACGCT
6444724 TCGGGTAAAACGCCGC
66 TCGGGTAAAACGCCGC
* * *
6444740 TAAAAACTAGAGCATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACCGGAGCATTAGCGACGT
1 TAAAAAC-AGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGACGC
* * *
6444805 TTTGTGTAAAAGGCCGC
65 TTCGGGTAAAACGCCGC
* *
6444822 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGC-AAAAA
1 TAAAAA-CAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAA
6444868 GTCATAGAAC
Statistics
Matches: 181, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
81 60 0.33
82 120 0.66
83 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (81 bp):
TAAAAACAGAGCATTAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGACGCT
TCGGGTAAAACGCCGC
Found at i:6444831 original size:123 final size:122
Alignment explanation
Indices: 6444608--6444867 Score: 328
Period size: 123 Copynumber: 2.1 Consensus size: 122
6444598 CGTTTTAAGA
* * *
6444608 AAAACGCCGCTAAAAACAGAGCAACAGCGGCGTATTTTACTAAAACGCCTCTAAAAACAGATCAT
1 AAAACGCCGCTAAAAACAGAGCAACAGCGGCGTATTTCACTAAAACGCCGCTAAAAACAGAGCAT
* *
6444673 TAGCGGCGCTTTAGGTAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTCGGGT
66 TAGCGACGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTCGGGT
** * ** *
6444730 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCG-CTTTCGGTAAAACGCCGCTAAAAACCGGAGC
1 AAAACGCCGCTAAAAAC-AGAGCAACAGCGGCGTATTTCACTAAAACGCCGCTAAAAA-CAGAGC
* * **
6444794 ATTAGCGACG-TTTTGTGTAAAAGGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
64 ATTAGCGACGCTTTAG-GTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTCGGGT
*
6444853 AAAATGCCGC-AAAAA
1 AAAACGCCGCTAAAAA
6444868 GTCATAGAAC
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
122 45 0.38
123 74 0.62
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (122 bp):
AAAACGCCGCTAAAAACAGAGCAACAGCGGCGTATTTCACTAAAACGCCGCTAAAAACAGAGCAT
TAGCGACGCTTTAGGTAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTCGGGT
Found at i:6445117 original size:36 final size:39
Alignment explanation
Indices: 6445047--6445122 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 39
6445037 ATAGTTTAAG
* * *
6445047 ATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
6445086 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
6445122 A
1 A
6445123 GTAATTGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
38 1 0.03
39 16 0.47
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (39 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGGAGTTAACT
Found at i:6449232 original size:133 final size:133
Alignment explanation
Indices: 6448860--6449243 Score: 752
Period size: 132 Copynumber: 2.9 Consensus size: 133
6448850 TGGTGATTCC
6448860 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
6448925 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
6448990 TAT
131 TAT
6448993 A-TTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
6449057 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
6449122 TAT
131 TAT
*
6449125 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
6449190 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
6449244 TGTTGAATTC
Statistics
Matches: 249, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
132 132 0.53
133 117 0.47
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.51
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATATAATAAAATTGT
TAT
Found at i:6457255 original size:41 final size:40
Alignment explanation
Indices: 6457209--6457351 Score: 176
Period size: 41 Copynumber: 3.7 Consensus size: 40
6457199 CTGGGCAAAT
*
6457209 TAGCGGTGTTTTTTAAAAAAGCGCCGCTAAGTCTTGGTCTA
1 TAGCGGCGTTTTTT-AAAAAGCGCCGCTAAGTCTTGGTCTA
6457250 TAGCGGCGTTTTTT-AAAAGCGCCGCTAAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTAAAAAGCGCCGCT-AAG-TCTTGGTCTA
* *
6457291 TAGCGGCG-TTTTTAAAAA-CGCCGCAAAG-C-AGG--T-
1 TAGCGGCGTTTTTTAAAAAGCGCCGCTAAGTCTTGGTCTA
6457324 TAGCGGCGTTTTTTAAAAAGCGCCGCTA
1 TAGCGGCGTTTTTTAAAAAGCGCCGCTA
6457352 TAAGACTTTA
Statistics
Matches: 93, Mismatches: 4, Indels: 16
0.82 0.04 0.14
Matches are distributed among these distances:
33 8 0.09
34 11 0.12
35 7 0.08
36 2 0.02
37 1 0.01
39 15 0.16
40 14 0.15
41 35 0.38
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
TAGCGGCGTTTTTTAAAAAGCGCCGCTAAGTCTTGGTCTA
Found at i:6457314 original size:40 final size:40
Alignment explanation
Indices: 6457209--6457508 Score: 171
Period size: 41 Copynumber: 7.5 Consensus size: 40
6457199 CTGGGCAAAT
*
6457209 TAGCGGTGTTTTTTAAAAAAGCGCCGCT-AAGTCTTGGTCTA
1 TAGCGGCGTTTTTT-AAAAA-CGCCGCTAAAGTCTTGGTCTA
*
6457250 TAGCGGCGTTTTTTAAAAGCGCCGCTAAAGTTCTTGGTCTA
1 TAGCGGCGTTTTTTAAAAACGCCGCTAAAG-TCTTGGTCTA
*
6457291 TAGCGGCG-TTTTTAAAAACGCCGC-AAAG-C-AGG--T-
1 TAGCGGCGTTTTTTAAAAACGCCGCTAAAGTCTTGGTCTA
*
6457324 TAGCGGCGTTTTTTAAAAAGCGCCGCTATAAGAC----T-T-
1 TAGCGGCGTTTTTTAAAAA-CGCCGCTA-AAGTCTTGGTCTA
** * * ** **
6457360 TAGCGGCGCTTTAGTAGAAAAACGCCGCTATAGACCAAGAAC-A
1 TAGCGGCG-TTT--TTTAAAAACGCCGCTAAAG-TCTTGGTCTA
* *
6457403 TTAGCGGCGCTTTTTTAAAAAAACGCCGCTAAAGGTCCTGGTCTT
1 -TAGCGGCG-TTTTTT--AAAAACGCCGCTAAA-GTCTTGGTCTA
* * * * *
6457448 TGGCGGCGTTTTTTAAGAGCGCCGCTAAAGGTCCTGGTCTT
1 TAGCGGCGTTTTTTAAAAACGCCGCTAAA-GTCTTGGTCTA
*
6457489 TAGCGGCGCTTTTATAAAAA
1 TAGCGGCG-TTTTTTAAAAA
6457509 AACGCCGTCA
Statistics
Matches: 210, Mismatches: 25, Indels: 47
0.74 0.09 0.17
Matches are distributed among these distances:
33 8 0.04
34 11 0.05
35 6 0.03
36 12 0.06
37 9 0.04
38 10 0.05
39 17 0.08
40 22 0.10
41 63 0.30
42 9 0.04
43 6 0.03
44 36 0.17
45 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (40 bp):
TAGCGGCGTTTTTTAAAAACGCCGCTAAAGTCTTGGTCTA
Found at i:6458371 original size:29 final size:28
Alignment explanation
Indices: 6458311--6458399 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 28
6458301 ATTTTGTTAG
*
6458311 ATAAGTCCTTATACTTTTA-TTAACCCAA
1 ATAAG-CCTTAAACTTTTATTTAACCCAA
*
6458339 ATAAGCCTTAAACTTTAATTTATACCCAA
1 ATAAGCCTTAAACTTTTATTTA-ACCCAA
* * *
6458368 ATAAATCTTTTAACTTTTATTTAACCCAA
1 AT-AAGCCTTAAACTTTTATTTAACCCAA
6458397 ATA
1 ATA
6458400 GGGCTTATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
27 11 0.21
28 9 0.17
29 16 0.31
30 16 0.31
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.39
Consensus pattern (28 bp):
ATAAGCCTTAAACTTTTATTTAACCCAA
Found at i:6461131 original size:25 final size:25
Alignment explanation
Indices: 6461087--6461135 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
6461077 ATAATAGCGT
*
6461087 ATATATTTCATGTACATATATGTAG
1 ATATATTTCATATACATATATGTAG
**
6461112 ATATATTTCATATATTTATATGTA
1 ATATATTTCATATACATATATGTA
6461136 TATTATGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.49
Consensus pattern (25 bp):
ATATATTTCATATACATATATGTAG
Found at i:6461382 original size:22 final size:22
Alignment explanation
Indices: 6461357--6461399 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6461347 TATATTTTAA
6461357 TATTACGCTATATAT-GTTTTTG
1 TATTACG-TATATATAGTTTTTG
*
6461379 TATTATGTATATATAGTTTTT
1 TATTACGTATATATAGTTTTT
6461400 AAATATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.58
Consensus pattern (22 bp):
TATTACGTATATATAGTTTTTG
Found at i:6461489 original size:24 final size:24
Alignment explanation
Indices: 6461461--6461510 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
6461451 TTTTTATCGC
6461461 ATAAACATTTTTATTTATATATAT
1 ATAAACATTTTTATTTATATATAT
6461485 ATAAACATTTTTATTTATATATAT
1 ATAAACATTTTTATTTATATATAT
6461509 AT
1 AT
6461511 CGCACATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
ATAAACATTTTTATTTATATATAT
Found at i:6467575 original size:13 final size:13
Alignment explanation
Indices: 6467557--6467581 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6467547 TATTTTAATA
6467557 TTATTTTGTGTGT
1 TTATTTTGTGTGT
6467570 TTATTTTGTGTG
1 TTATTTTGTGTG
6467582 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:6469195 original size:41 final size:40
Alignment explanation
Indices: 6469150--6469461 Score: 393
Period size: 41 Copynumber: 7.7 Consensus size: 40
6469140 CGGACGTTAC
6469150 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAA-TAATTCAGACTTTAA
6469191 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
6469232 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
6469273 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
6469314 GTCTA-CAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
* *
6469354 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
6469395 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-AAT-AATTCAGACTTTAA
* **
6469436 GCCTAGCAGGCAAAATGCCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
6469462 CTGTTTAAAT
Statistics
Matches: 242, Mismatches: 13, Indels: 33
0.84 0.05 0.11
Matches are distributed among these distances:
39 8 0.03
40 41 0.17
41 182 0.75
42 5 0.02
43 5 0.02
44 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGAATAATTCAGACTTTAA
Found at i:6469250 original size:82 final size:82
Alignment explanation
Indices: 6469150--6469459 Score: 477
Period size: 82 Copynumber: 3.8 Consensus size: 82
6469140 CGGACGTTAC
6469150 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATA-TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
6469214 ATACATTTCAGACTTTAA
65 ATACATTTCAGACTTTAA
*
6469232 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
6469297 TACATTTCAGACTTTAA
66 TACATTTCAGACTTTAA
*
6469314 GTCTA-CAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* *
6469378 TACATTTCAGACTATAT
66 TACATTTCAGACTTTAA
* * **
6469395 GTCTAGCAGGC-TAAGTGCCGGTG-TACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGG
1 GTCTAGCAGGCTTAA-TGCCGGTGATA-T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGG
6469457 TGA
63 TGA
6469460 ATCTGTTTAA
Statistics
Matches: 215, Mismatches: 8, Indels: 10
0.92 0.03 0.04
Matches are distributed among these distances:
81 84 0.39
82 129 0.60
83 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (82 bp):
GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAA
Found at i:6469368 original size:122 final size:123
Alignment explanation
Indices: 6469150--6469459 Score: 459
Period size: 122 Copynumber: 2.5 Consensus size: 123
6469140 CGGACGTTAC
6469150 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* *
6469215 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
66 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
6469273 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAAGTCTA-CAGGCTTAATGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
* *
6469335 GATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
64 GATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
* * * * **
6469395 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGT
1 GTCTAGCAGGCTTAA-TGCCGGTGAAGT-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
6469458 GA
64 GA
6469460 ATCTGTTTAA
Statistics
Matches: 172, Mismatches: 8, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
121 5 0.03
122 107 0.62
123 57 0.33
124 2 0.01
125 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
Found at i:6469436 original size:163 final size:164
Alignment explanation
Indices: 6469150--6469459 Score: 477
Period size: 163 Copynumber: 1.9 Consensus size: 164
6469140 CGGACGTTAC
6469150 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* * *
6469215 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGC
66 TACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATATATATCAGACTTTAAGCCTAGC
**
6469280 AGGCTTAATGCCGGTGATACATTTCAGACTTTAA
131 AGGCAAAATGCCGGTGATACATTTCAGACTTTAA
*
6469314 GTCTA-CAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
6469377 ATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TACTGA-ATCAGGCTTTAAGCC
65 ATACATTTCAGACTATAAGTCTAGCAGGCTTAA-TGCCGGTGATA-T-ATATCAGACTTTAAGCC
6469439 TAGCAGGCAAAATGCCGGTGA
127 TAGCAGGCAAAATGCCGGTGA
6469460 ATCTGTTTAA
Statistics
Matches: 134, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
162 5 0.04
163 122 0.91
164 7 0.05
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (164 bp):
GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATATATATCAGACTTTAAGCCTAGC
AGGCAAAATGCCGGTGATACATTTCAGACTTTAA
Found at i:6475338 original size:13 final size:13
Alignment explanation
Indices: 6475320--6475344 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6475310 TATTTTAATA
6475320 TTATTTTGTGTGT
1 TTATTTTGTGTGT
6475333 TTATTTTGTGTG
1 TTATTTTGTGTG
6475345 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:6476954 original size:41 final size:40
Alignment explanation
Indices: 6476909--6477260 Score: 448
Period size: 41 Copynumber: 8.7 Consensus size: 40
6476899 CGGACGTTAC
6476909 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAA-TAATTCAGACTTTAA
6476950 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
6476991 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
*
6477032 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
6477073 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
6477114 GTCTA-CAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
* *
6477154 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
6477195 GTCTAGCAGGC-TAAGTG-CGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-AAT-AATTCAGACTTTAA
* **
6477235 GCCTAGCAGGCAAAATGCCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
6477261 CTGTTTAAAT
Statistics
Matches: 281, Mismatches: 13, Indels: 35
0.85 0.04 0.11
Matches are distributed among these distances:
39 8 0.03
40 66 0.23
41 198 0.70
42 5 0.02
43 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGAATAATTCAGACTTTAA
Found at i:6477173 original size:81 final size:82
Alignment explanation
Indices: 6476909--6477258 Score: 525
Period size: 82 Copynumber: 4.3 Consensus size: 82
6476899 CGGACGTTAC
6476909 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
*
6476972 GATACATTTCAGACTTTAA
64 GATATATTTCAGACTTTAA
*
6476991 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
6477056 TATATTTCAGACTTTAA
66 TATATTTCAGACTTTAA
6477073 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTA-CAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
6477137 TATATTTCAGACTTTAA
66 TATATTTCAGACTTTAA
* *
6477154 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTG-CGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG
* *
6477217 -TACTGA-ATCAGGCTTTAA
65 ATA-T-ATTTCAGACTTTAA
* **
6477235 GCCTAGCAGGCAAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
6477259 ATCTGTTTAA
Statistics
Matches: 253, Mismatches: 9, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
80 4 0.02
81 121 0.48
82 128 0.51
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (82 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TATATTTCAGACTTTAA
Found at i:6477178 original size:122 final size:123
Alignment explanation
Indices: 6476909--6477258 Score: 541
Period size: 122 Copynumber: 2.9 Consensus size: 123
6476899 CGGACGTTAC
*
6476909 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
6476973 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
65 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
6477032 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
6477097 TACATTTCAGACTTTAAGTCTA-CAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
66 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
* * *
6477154 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTG-CGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTG
* * * **
6477217 -TAC-TGAATCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
65 ATACAT--TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
6477259 ATCTGTTTAA
Statistics
Matches: 213, Mismatches: 9, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
119 1 0.00
120 3 0.01
121 22 0.10
122 102 0.48
123 84 0.39
124 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
Found at i:6483111 original size:40 final size:40
Alignment explanation
Indices: 6483067--6483145 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
6483057 ACTATGCTTG
6483067 AAAAAGGAAACCAAGATGAAAACCCGAAAAGGGCATCTTAA
1 AAAAAGG-AACCAAGATGAAAACCCGAAAAGGGCATCTTAA
* * * *
6483108 AAAAAGGGATCAAGGTGAAAACCCGAAAAGGGCGTCTT
1 AAAAAGGAACCAAGATGAAAACCCGAAAAGGGCATCTT
6483146 GATTAATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.11
Consensus pattern (40 bp):
AAAAAGGAACCAAGATGAAAACCCGAAAAGGGCATCTTAA
Found at i:6484102 original size:73 final size:74
Alignment explanation
Indices: 6483960--6484127 Score: 245
Period size: 73 Copynumber: 2.3 Consensus size: 74
6483950 TATTTTGATG
* *
6483960 TTTT-AATTTCTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGACAT
1 TTTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
6484023 ATTGAGGTA
66 ACTGAGGTA
* *
6484032 TTTTCAGTTT-T-TATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATACA
1 TTTTCAATTTCTGT-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
6484095 CGCTGAGGTA
65 CACTGAGGTA
6484105 TTTTCAATTTCTGTTTTTTCAAA
1 TTTTCAATTTCTGTTTTTTCAAA
6484128 TTTCTGTTTT
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
72 5 0.06
73 68 0.81
74 10 0.12
75 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
ACTGAGGTA
Found at i:6484125 original size:15 final size:16
Alignment explanation
Indices: 6484105--6484137 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
6484095 CGCTGAGGTA
6484105 TTTTC-AATTTCTGTT
1 TTTTCAAATTTCTGTT
6484120 TTTTCAAATTTCTGTT
1 TTTTCAAATTTCTGTT
6484136 TT
1 TT
6484138 CAAAAATCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (16 bp):
TTTTCAAATTTCTGTT
Found at i:6484137 original size:14 final size:15
Alignment explanation
Indices: 6484105--6484141 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
6484095 CGCTGAGGTA
6484105 TTTTC-AATTTCTGTT
1 TTTTCAAATTTCTG-T
6484120 TTTTCAAATTTCTG-
1 TTTTCAAATTTCTGT
6484134 TTTTCAAA
1 TTTTCAAA
6484142 AATCGACTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 5 0.24
16 8 0.38
ACGTcount: A:0.22, C:0.14, G:0.05, T:0.59
Consensus pattern (15 bp):
TTTTCAAATTTCTGT
Found at i:6484184 original size:88 final size:89
Alignment explanation
Indices: 6484046--6484263 Score: 314
Period size: 88 Copynumber: 2.4 Consensus size: 89
6484036 CAGTTTTTAT
* *
6484046 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAATACACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
6484111 ATTTCTGTTTTTTCAAATT-T-CTG
66 ATTTCTG-TTTTTCAAATTCTACTG
* *
6484134 TTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
* *
6484199 ATTTCTGTTTTTCAAATTCTATTT
66 ATTTCTGTTTTTCAAATTCTACTG
* *
6484223 TTATTCTTCAAAATCAACTCATATTACGAGAGGTGAGTTGA
1 TT-TTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
6484264 TCCTTTTTAA
Statistics
Matches: 116, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
87 11 0.09
88 69 0.59
89 3 0.03
90 3 0.03
92 30 0.26
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (89 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTGTTTTTCAAATTCTACTG
Found at i:6484318 original size:147 final size:141
Alignment explanation
Indices: 6484126--6484558 Score: 522
Period size: 147 Copynumber: 3.1 Consensus size: 141
6484116 TGTTTTTTCA
* *
6484126 AATTTCTGTTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
6484191 TAATTTCAATTTCTGTTTTTCAAATTCTATTTTTATTCTTCAAAATCAACTCATATTACGAGAGG
66 TAATTTCAATTTCTGTTTTTCAAATT-TATGTTT-TTC--AAAAATCAACTCATATTACGAGAGG
*
6484256 TGAGTTGATCCTTTTT
127 TGAGTTGAGCC-TTTT
* ** *
6484272 AATTTCTGTTTGTTAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATATACGCTGAG
1 AATTTCTGTTT-TTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * *
6484337 GTAATTTCAATTTCTGTCTTT--AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
65 GTAATTTCAATTTCTGTTTTTCAAATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGA
6484400 GTTGAGCCTTTT
130 GTTGAGCCTTTT
* * *
6484412 AATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* *
6484477 GT-A--T---TTTCAG--TTTC-------TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
65 GTAATTTCAATTTCTGTTTTTCAAATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGA
6484527 GTTGAGCCTTTT
130 GTTGAGCCTTTT
*
6484539 AATTTCTGTTTTTCAAAATC
1 AATTTCTGTTTTTAAAAATC
6484559 TACTTTTCAA
Statistics
Matches: 263, Mismatches: 21, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
126 6 0.02
127 61 0.23
132 3 0.01
134 5 0.02
137 1 0.00
139 3 0.01
140 61 0.23
141 33 0.13
143 3 0.01
144 5 0.02
145 4 0.02
146 11 0.04
147 67 0.25
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (141 bp):
AATTTCTGTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTCAATTTCTGTTTTTCAAATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAG
TTGAGCCTTTT
Found at i:6484421 original size:54 final size:54
Alignment explanation
Indices: 6484355--6484462 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
6484345 AATTTCTGTC
6484355 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
6484409 TTTAATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
6484463 CGGGGCACGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (54 bp):
TTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
Found at i:6484451 original size:140 final size:140
Alignment explanation
Indices: 6484126--6484556 Score: 550
Period size: 127 Copynumber: 3.1 Consensus size: 140
6484116 TGTTTTTTCA
*
6484126 AATTTCTG-TTTTCAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * * * *
6484190 GTAATTTCAATTTCTGTTTTTCAAATTCTATTTTTATTCTTCAAAATCAACTCATATTACGAGAG
66 GTAATTTCAATTTCTGTCTTT--AATT-TCTGTTT-TTC--AAAAATCAACTCATATTGCGAGAG
*
6484255 GTGAGTTGATCCTTTTT
125 GTGAGTTGAGCC-TTTT
* ** *
6484272 AATTTCTGTTTGTT-AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAATATACGCTGA
1 AATTTCTGTTT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
6484336 GGTAATTTCAATTTCTGTCTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
65 GGTAATTTCAATTTCTGTCTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG
6484401 TTGAGCCTTTT
130 TTGAGCCTTTT
* * *
6484412 AATTTCTGTTTTTCAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
6484477 G-----T--A-TT-T-TC---AGTTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
66 GTAATTTCAATTTCTGTCTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
6484529 TGAGCCTTTT
131 TGAGCCTTTT
6484539 AATTTCTGTTTTTCAAAA
1 AATTTCTGTTTTTCAAAA
6484557 TCTACTTTTC
Statistics
Matches: 263, Mismatches: 19, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
127 71 0.27
130 2 0.01
131 1 0.00
132 2 0.01
133 1 0.00
135 1 0.00
139 2 0.01
140 60 0.23
141 33 0.13
143 3 0.01
144 5 0.02
145 4 0.02
146 8 0.03
147 68 0.26
148 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (140 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTAATTTCAATTTCTGTCTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTTTT
Found at i:6484812 original size:55 final size:55
Alignment explanation
Indices: 6484665--6484840 Score: 264
Period size: 59 Copynumber: 3.1 Consensus size: 55
6484655 AATTTCTACC
* *
6484665 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCTTTCAATTTATGTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCTTTAAATTCATGTT
* *
6484720 TTTCAAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAAATTCATGTT
1 TTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCTTTAAATTCATGTT
*
6484779 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCTTTAATTTC-TGTT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCTTTAAATTCATGTT
6484833 TTTCAAAA
1 TTTCAAAA
6484841 TCTGCTTTTA
Statistics
Matches: 110, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
54 12 0.11
55 47 0.43
59 51 0.46
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35
Consensus pattern (55 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCTTTAAATTCATGTT
Found at i:6486459 original size:47 final size:47
Alignment explanation
Indices: 6486388--6486933 Score: 912
Period size: 47 Copynumber: 11.6 Consensus size: 47
6486378 CCCTTCGGGA
* * * * * *
6486388 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6486435 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6486482 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6486529 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6486576 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6486623 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6486670 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
6486717 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6486764 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6486811 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
6486860 CTTATCACATATATACACTTTCACATTCATTACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6486907 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
6486934 TATTCAAATA
Statistics
Matches: 477, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 432 0.91
49 45 0.09
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6491019 original size:25 final size:25
Alignment explanation
Indices: 6490975--6491023 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
6490965 ATAATAGCGT
*
6490975 ATATATTTCATGTACATATATGTAG
1 ATATATTTCATATACATATATGTAG
**
6491000 ATATATTTCATATATTTATATGTA
1 ATATATTTCATATACATATATGTA
6491024 TATTATGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.49
Consensus pattern (25 bp):
ATATATTTCATATACATATATGTAG
Found at i:6491270 original size:22 final size:22
Alignment explanation
Indices: 6491245--6491287 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6491235 TATATTTTAA
6491245 TATTACGCTATATAT-GTTTTTG
1 TATTACG-TATATATAGTTTTTG
*
6491267 TATTATGTATATATAGTTTTT
1 TATTACGTATATATAGTTTTT
6491288 AAATATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.58
Consensus pattern (22 bp):
TATTACGTATATATAGTTTTTG
Found at i:6491374 original size:20 final size:20
Alignment explanation
Indices: 6491349--6491391 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
6491339 TTTTTATCGC
6491349 ATAAACATTTTTATTTATAT
1 ATAAACATTTTTATTTATAT
6491369 ATAAACATTTTTATTTATAT
1 ATAAACATTTTTATTTATAT
6491389 ATA
1 ATA
6491392 TATCGCACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
ATAAACATTTTTATTTATAT
Found at i:6503382 original size:25 final size:25
Alignment explanation
Indices: 6503349--6503401 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
6503339 CCAAATGTTT
* *
6503349 AAAAGCATTTAAGTGGGTATCGCCA
1 AAAACCATTTAAGTCGGTATCGCCA
*
6503374 AAAACCATTTAAGTCGGTGTCGCCA
1 AAAACCATTTAAGTCGGTATCGCCA
6503399 AAA
1 AAA
6503402 GCCACCGGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (25 bp):
AAAACCATTTAAGTCGGTATCGCCA
Found at i:6506148 original size:21 final size:21
Alignment explanation
Indices: 6506122--6506163 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6506112 TTTTTGTTAG
6506122 TAACTTAACTGTTAGTGACCA
1 TAACTTAACTGTTAGTGACCA
6506143 TAACTTAACTGTTAGTGACCA
1 TAACTTAACTGTTAGTGACCA
6506164 AAAAAGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
TAACTTAACTGTTAGTGACCA
Found at i:6508864 original size:53 final size:51
Alignment explanation
Indices: 6508798--6508896 Score: 130
Period size: 53 Copynumber: 1.9 Consensus size: 51
6508788 TTTTTCATAT
6508798 TTTAAATAAAAAAACATA-AAAATTAAAAATATTATTTTAAAAA-ATAAAAACTC
1 TTTAAATAAAAAAA-ATACAAAA-TAAAAATA--ATTTTAAAAATATAAAAACTC
**
6508851 TTTAAATTCAAAAAATACAAAATAAAAATAATTTTAAAAATATAAA
1 TTTAAATAAAAAAAATACAAAATAAAAATAATTTTAAAAATATAAA
6508897 TAAAAATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
50 10 0.24
51 5 0.12
52 11 0.26
53 16 0.38
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (51 bp):
TTTAAATAAAAAAAATACAAAATAAAAATAATTTTAAAAATATAAAAACTC
Found at i:6508883 original size:25 final size:24
Alignment explanation
Indices: 6508855--6508903 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
6508845 AAACTCTTTA
6508855 AATTCAAAAAATACAAAATAAAAAT
1 AATTCAAAAAATA-AAAATAAAAAT
** *
6508880 AATTTTAAAAATATAAATAAAAAT
1 AATTCAAAAAATAAAAATAAAAAT
6508904 TTTAAAATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (24 bp):
AATTCAAAAAATAAAAATAAAAAT
Found at i:6508906 original size:21 final size:20
Alignment explanation
Indices: 6508872--6508910 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
6508862 AAAATACAAA
*
6508872 ATAAAAATAATTTTAAAAAT
1 ATAAAAAAAATTTTAAAAAT
6508892 ATAAATAAAAATTTTAAAA
1 ATAAA-AAAAATTTTAAAA
6508911 TTCAATGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAAAAAAATTTTAAAAAT
Found at i:6509406 original size:21 final size:21
Alignment explanation
Indices: 6509381--6509426 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
6509371 ACATATGCCC
*
6509381 GTGTGAATC-TGGGACACGCCT
1 GTGTG-ATCTTGGGACACACCT
*
6509402 GTGTGGTCTTGGGACACACCT
1 GTGTGATCTTGGGACACACCT
6509423 GTGT
1 GTGT
6509427 CTTAAACCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.15, C:0.22, G:0.35, T:0.28
Consensus pattern (21 bp):
GTGTGATCTTGGGACACACCT
Found at i:6510737 original size:37 final size:37
Alignment explanation
Indices: 6510678--6510795 Score: 119
Period size: 37 Copynumber: 3.2 Consensus size: 37
6510668 ATAATCACAT
* ** * * *
6510678 ATTTACATGTCACTTTTTAATATATTAAATAAATACC
1 ATTTCCATGTCAAGTTTCAATATATCAAATAAATATC
* **
6510715 ATTTCCATGTCAAGTTTCAATATGTCATGTAAATATC
1 ATTTCCATGTCAAGTTTCAATATATCAAATAAATATC
* * * *
6510752 ATTTCCAAGACATGTTTCAATATATCAATTAAATATC
1 ATTTCCATGTCAAGTTTCAATATATCAAATAAATATC
6510789 ATTTCCA
1 ATTTCCA
6510796 AGTATTTCAA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (37 bp):
ATTTCCATGTCAAGTTTCAATATATCAAATAAATATC
Found at i:6510796 original size:37 final size:37
Alignment explanation
Indices: 6510696--6510797 Score: 125
Period size: 37 Copynumber: 2.8 Consensus size: 37
6510686 GTCACTTTTT
* * * * *
6510696 AATATATTAAATAAATACCATTTCCATGTCAAGTTTC
1 AATATATCAATTAAATATCATTTCCAAGACAAGTTTC
* *
6510733 AATATGTC-ATGTAAATATCATTTCCAAGACATGTTTC
1 AATATATCAAT-TAAATATCATTTCCAAGACAAGTTTC
6510770 AATATATCAATTAAATATCATTTCCAAG
1 AATATATCAATTAAATATCATTTCCAAG
6510798 TATTTCAAGT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
36 1 0.02
37 52 0.95
38 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (37 bp):
AATATATCAATTAAATATCATTTCCAAGACAAGTTTC
Found at i:6511872 original size:2 final size:2
Alignment explanation
Indices: 6511865--6511902 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6511855 TCAACAATAA
6511865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6511903 TACCATTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6513718 original size:26 final size:28
Alignment explanation
Indices: 6513689--6513753 Score: 82
Period size: 26 Copynumber: 2.4 Consensus size: 28
6513679 TTAGAATTTA
* *
6513689 TTTTATATTTTAAAACT-TCTTTTATTT
1 TTTTATATTTTAAAACTGGCTTTTATAT
*
6513716 TTTTA-ATTTT-AAAGTGGCTTTTATAT
1 TTTTATATTTTAAAACTGGCTTTTATAT
6513742 TTTTATATTTTA
1 TTTTATATTTTA
6513754 TATTTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
25 4 0.12
26 18 0.56
27 10 0.31
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.65
Consensus pattern (28 bp):
TTTTATATTTTAAAACTGGCTTTTATAT
Found at i:6518804 original size:33 final size:33
Alignment explanation
Indices: 6518725--6518815 Score: 111
Period size: 30 Copynumber: 2.8 Consensus size: 33
6518715 CAAAACTTAT
* *
6518725 TTTATTGTTAATTTTGTTATTATTTTAAAGACA
1 TTTATTGTTAATGTTGTTATTATTTTAGAGACA
6518758 --T-TTGTTAATGTTGTTATTATTTTAGAGACA
1 TTTATTGTTAATGTTGTTATTATTTTAGAGACA
6518788 TTTACTTGTTAA-GTTG-TATCTATTTTAG
1 TTTA-TTGTTAATGTTGTTAT-TATTTTAG
6518816 TGTTATTTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
30 27 0.53
31 1 0.02
32 4 0.08
33 12 0.24
34 7 0.14
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.56
Consensus pattern (33 bp):
TTTATTGTTAATGTTGTTATTATTTTAGAGACA
Found at i:6518895 original size:18 final size:18
Alignment explanation
Indices: 6518874--6518913 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
6518864 GAAATATTTA
*
6518874 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
6518892 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
6518910 TTTT
1 TTTT
6518914 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:6523514 original size:13 final size:14
Alignment explanation
Indices: 6523488--6523521 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
6523478 CCGACGACGA
6523488 TTTTCCTTTCTTTT
1 TTTTCCTTTCTTTT
6523502 TTTTCCTTT-TTTT
1 TTTTCCTTTCTTTT
*
6523515 TCTTCCT
1 TTTTCCT
6523522 GAATCTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTCCTTTCTTTT
Found at i:6526900 original size:19 final size:19
Alignment explanation
Indices: 6526873--6526919 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
6526863 ATGTTGATGT
*
6526873 TGCTCTGTTTATATAGTTG
1 TGCTTTGTTTATATAGTTG
6526892 TGCTTTGTTTATATAGTTG
1 TGCTTTGTTTATATAGTTG
6526911 TGCTTTGTT
1 TGCTTTGTT
6526920 CCATTACTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.13, C:0.09, G:0.21, T:0.57
Consensus pattern (19 bp):
TGCTTTGTTTATATAGTTG
Found at i:6536202 original size:18 final size:20
Alignment explanation
Indices: 6536163--6536203 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6536153 CTCATATCAC
6536163 AAATCGAAAATAAATATGAT
1 AAATCGAAAATAAATATGAT
*
6536183 AAATTGAAAA-AAAT-TGAT
1 AAATCGAAAATAAATATGAT
6536201 AAA
1 AAA
6536204 AAAATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 4 0.20
20 9 0.45
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (20 bp):
AAATCGAAAATAAATATGAT
Found at i:6539251 original size:13 final size:13
Alignment explanation
Indices: 6539233--6539260 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6539223 AGGTATTTCA
6539233 TATAAAAGTTTAT
1 TATAAAAGTTTAT
6539246 TATAAAAGTTTAT
1 TATAAAAGTTTAT
6539259 TA
1 TA
6539261 AGAGTTGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
TATAAAAGTTTAT
Found at i:6545502 original size:14 final size:15
Alignment explanation
Indices: 6545483--6545519 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
6545473 TGAACTTCAT
6545483 TCTTTTTTTCTTT-A
1 TCTTTTTTTCTTTAA
*
6545497 TCTTTTTTTTTTTAA
1 TCTTTTTTTCTTTAA
6545512 T-TTTTTTT
1 TCTTTTTTT
6545520 TGTTGAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 19 0.90
15 2 0.10
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (15 bp):
TCTTTTTTTCTTTAA
Found at i:6552957 original size:58 final size:59
Alignment explanation
Indices: 6552842--6552971 Score: 158
Period size: 58 Copynumber: 2.2 Consensus size: 59
6552832 TATACTAGTA
** * * * *
6552842 GTCACTCAACTATTAATAAATTTTTTTTTAGTTACTCAACTATGAAAATTTATAAAATG
1 GTCACTCAACTATTAATAAACCTTTTTTGAGTCACTCAACTATGAAAAGTTACAAAATG
*
6552901 GTCACTTAACTATTAATAAACCTTTTTTGA-TCA-TACAACTATGAAAAGTTACAAAATG
1 GTCACTCAACTATTAATAAACCTTTTTTGAGTCACT-CAACTATGAAAAGTTACAAAATG
6552959 GTCAC-CAAACTAT
1 GTCACTC-AACTAT
6552972 ACAATTTTGT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 1 0.02
58 34 0.56
59 26 0.43
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (59 bp):
GTCACTCAACTATTAATAAACCTTTTTTGAGTCACTCAACTATGAAAAGTTACAAAATG
Found at i:6553127 original size:10 final size:9
Alignment explanation
Indices: 6553111--6553136 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
6553101 GTGTAATTTG
6553111 ATTTTTTTT
1 ATTTTTTTT
6553120 ATTTTTTTT
1 ATTTTTTTT
6553129 ATTTTTTT
1 ATTTTTTT
6553137 GCAATTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:6557309 original size:13 final size:14
Alignment explanation
Indices: 6557291--6557320 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
6557281 CTTCTCTCTA
6557291 TAAAATATA-ATTT
1 TAAAATATATATTT
6557304 TAAAATATATATTT
1 TAAAATATATATTT
6557318 TAA
1 TAA
6557321 GTTTGAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TAAAATATATATTT
Found at i:6560453 original size:12 final size:12
Alignment explanation
Indices: 6560438--6560464 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6560428 ATACATTTAA
6560438 AAATATTAAAAC
1 AAATATTAAAAC
6560450 AAATATTAAAAC
1 AAATATTAAAAC
6560462 AAA
1 AAA
6560465 AAAACAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:6567705 original size:20 final size:18
Alignment explanation
Indices: 6567667--6567710 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
6567657 AAGCCCTAAT
6567667 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
6567684 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTT-TTTC
6567704 TTTCCCT
1 TTTCCCT
6567711 CAATTTTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:6567797 original size:28 final size:27
Alignment explanation
Indices: 6567759--6567834 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 27
6567749 TTTCTTTATT
* *
6567759 CTTTTTATTATTTCTTTTATTTATTTTA
1 CTTTATATTATTTCTTATATTT-TTTTA
*
6567787 CTTTATATTATTATATTATATTTTTTTA
1 CTTTATATTATT-TCTTATATTTTTTTA
*
6567815 ATTATAATTATTATTTCTTA
1 CTT-T-A-TATTATTTCTTA
6567835 AATAATAAGC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
28 18 0.46
29 9 0.23
30 5 0.13
31 7 0.18
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.68
Consensus pattern (27 bp):
CTTTATATTATTTCTTATATTTTTTTA
Found at i:6572030 original size:23 final size:23
Alignment explanation
Indices: 6572004--6572048 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
6571994 TATATAATAA
* *
6572004 ATATATATTTTTTATTTTTAATC
1 ATATATATATTTTAATTTTAATC
*
6572027 ATATTTATATTTTAATTTTAAT
1 ATATATATATTTTAATTTTAAT
6572049 TTTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATATATTTTAATTTTAATC
Found at i:6572119 original size:40 final size:41
Alignment explanation
Indices: 6572064--6572150 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 41
6572054 TATAATCAAT
*
6572064 TTTTATTATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
1 TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
* * * *
6572105 TTTTAATATATTTTTT-ATTTGTTTCTTGTTTTAATATTTG
1 TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
6572145 TTTTAA
1 TTTTAA
6572151 ATGTATTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 26 0.63
41 15 0.37
ACGTcount: A:0.23, C:0.01, G:0.09, T:0.67
Consensus pattern (41 bp):
TTTTAATATATTTTTTAATTTGTGTATTGTTTTAAGAATTG
Found at i:6572446 original size:24 final size:24
Alignment explanation
Indices: 6572387--6572442 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
6572377 TGATTTAAAC
* *
6572387 AAATATTCATA-TTTATATTATTA
1 AAATATTTATATTTTATACTATTA
*
6572410 AAATGTTTATATTTTATACTA-TA
1 AAATATTTATATTTTATACTATTA
6572433 AAATATTTAT
1 AAATATTTAT
6572443 TATTAAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 20 0.71
24 8 0.29
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
AAATATTTATATTTTATACTATTA
Found at i:6573273 original size:13 final size:13
Alignment explanation
Indices: 6573255--6573279 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6573245 GTCCAATTAA
6573255 CACCCCATTAAAC
1 CACCCCATTAAAC
6573268 CACCCCATTAAA
1 CACCCCATTAAA
6573280 TCACTCCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (13 bp):
CACCCCATTAAAC
Found at i:6573801 original size:20 final size:22
Alignment explanation
Indices: 6573776--6573817 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
6573766 CATAATAGTG
6573776 TTTTTA-TTATT-TTATTATTA
1 TTTTTACTTATTATTATTATTA
6573796 TTTTTACCTTATTATTATTATT
1 TTTTTA-CTTATTATTATTATT
6573818 TTAAAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
22 5 0.26
23 8 0.42
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTTACTTATTATTATTATTA
Found at i:6574181 original size:38 final size:38
Alignment explanation
Indices: 6574135--6574209 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
6574125 CTTTTAACCT
6574135 CTAGATTACTTATTATT-TATATTAATATTATCATTATC
1 CTAGATTACTTATTATTAT-TATTAATATTATCATTATC
* *
6574173 CTAGATTACTTATTATTATTATTACTATTATTATTAT
1 CTAGATTACTTATTATTATTATTAATATTATCATTAT
6574210 TATTATTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 33 0.97
39 1 0.03
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (38 bp):
CTAGATTACTTATTATTATTATTAATATTATCATTATC
Found at i:6574190 original size:3 final size:3
Alignment explanation
Indices: 6574177--6574216 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
6574167 ATTATCCTAG
*
6574177 ATT ACTT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6574217 TAGGCTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:6578618 original size:11 final size:11
Alignment explanation
Indices: 6578602--6578646 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
6578592 ACTCTAGTCG
6578602 AAAAATAAAAT
1 AAAAATAAAAT
*
6578613 AAAAATAAATT
1 AAAAATAAAAT
**
6578624 AAAAAGGAAAT
1 AAAAATAAAAT
6578635 AAAAAATAAAAT
1 -AAAAATAAAAT
6578647 CAACAATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:6588394 original size:43 final size:42
Alignment explanation
Indices: 6588333--6588415 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 42
6588323 TGTAAATGTT
* *
6588333 AAAATTAGAAATTAATATATGGTAAAATTATATTTTGAACCAA
1 AAAATTAGAAATTAATATATGATAAAATTACATTTT-AACCAA
* * *
6588376 AAAATTATAAGTTCATATATGATAAAATTACATTTTAACC
1 AAAATTAGAAATTAATATATGATAAAATTACATTTTAACC
6588416 TCTTAATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 4 0.11
43 31 0.89
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.36
Consensus pattern (42 bp):
AAAATTAGAAATTAATATATGATAAAATTACATTTTAACCAA
Found at i:6597173 original size:16 final size:16
Alignment explanation
Indices: 6597152--6597187 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
6597142 AATTTGTGAA
*
6597152 AAATATTTAATATATT
1 AAATATTAAATATATT
6597168 AAATATTAAATATATT
1 AAATATTAAATATATT
6597184 AAAT
1 AAAT
6597188 GAATTAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATTAAATATATT
Found at i:6597993 original size:15 final size:15
Alignment explanation
Indices: 6597973--6598005 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
6597963 TTTAAGATGC
6597973 TATTATATTTAT-TAT
1 TATTAT-TTTATATAT
6597988 TATTATTTTATATAT
1 TATTATTTTATATAT
6598003 TAT
1 TAT
6598006 AAGAACACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTATTTTATATAT
Found at i:6602472 original size:4 final size:4
Alignment explanation
Indices: 6602463--6602489 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6602453 AAACTTGTGT
6602463 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
6602490 TGGGGGGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:6611296 original size:18 final size:17
Alignment explanation
Indices: 6611273--6611306 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6611263 TTTATTATCT
6611273 AAATTAACAAATTTAATG
1 AAATTAAC-AATTTAATG
*
6611291 AAATTATCAATTTAAT
1 AAATTAACAATTTAAT
6611307 ATTGGGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (17 bp):
AAATTAACAATTTAATG
Found at i:6612639 original size:16 final size:16
Alignment explanation
Indices: 6612618--6612660 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
6612608 ACTTTGATCG
6612618 GGCTTTGTGCCTAGCA
1 GGCTTTGTGCCTAGCA
6612634 GGCTTTGTGCCTAGCA
1 GGCTTTGTGCCTAGCA
*
6612650 GGCTTAGTGCC
1 GGCTTTGTGCC
6612661 AGTGAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.30
Consensus pattern (16 bp):
GGCTTTGTGCCTAGCA
Found at i:6615671 original size:2 final size:2
Alignment explanation
Indices: 6615664--6615692 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6615654 AAGCCACTTT
6615664 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6615693 TTAATTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6616165 original size:13 final size:13
Alignment explanation
Indices: 6616143--6616184 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
6616133 AATAATTTTA
6616143 ATTT-ATTAAAAT
1 ATTTGATTAAAAT
*
6616155 ATTTGATTAAAAA
1 ATTTGATTAAAAT
* *
6616168 ATTAGATAAAAAT
1 ATTTGATTAAAAT
6616181 ATTT
1 ATTT
6616185 TTCATACATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (13 bp):
ATTTGATTAAAAT
Found at i:6618716 original size:12 final size:14
Alignment explanation
Indices: 6618689--6618720 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
6618679 GATTGAATCA
6618689 TATTTTACAGTTTT
1 TATTTTACAGTTTT
6618703 TATTTT-CA-TTTT
1 TATTTTACAGTTTT
6618715 TATTTT
1 TATTTT
6618721 TTGATAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.56
13 2 0.11
14 6 0.33
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.72
Consensus pattern (14 bp):
TATTTTACAGTTTT
Found at i:6621793 original size:29 final size:30
Alignment explanation
Indices: 6621691--6621793 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 30
6621681 ATATTTATCC
* *
6621691 TGATAGTATTTTATTCATTTAATATTAATG
1 TGATAATATTTTATTAATTTAATATTAATG
* ** * * *
6621721 TGA-GATATTAAATTAAATTAAATATTTATCT
1 TGATAATATTTTATT-AATTTAATATTAAT-G
6621752 TGATAATATTTTATTAATTTAATATTAATG
1 TGATAATATTTTATTAATTTAATATTAATG
*
6621782 TGATTA-ATTTTA
1 TGATAATATTTTA
6621794 ATCATAGTTG
Statistics
Matches: 55, Mismatches: 15, Indels: 7
0.71 0.19 0.09
Matches are distributed among these distances:
29 13 0.24
30 19 0.35
31 15 0.27
32 8 0.15
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (30 bp):
TGATAATATTTTATTAATTTAATATTAATG
Found at i:6624059 original size:26 final size:26
Alignment explanation
Indices: 6624006--6624061 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
6623996 AGTTAATAGG
* **
6624006 ATCAGTTGGTCAAATCAATTAATACA
1 ATCAGTTAGTCAAATCAACCAATACA
* *
6624032 ATCAGTTAGTCAAATCAACCATTGCA
1 ATCAGTTAGTCAAATCAACCAATACA
6624058 ATCA
1 ATCA
6624062 ATTATTAGCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.29
Consensus pattern (26 bp):
ATCAGTTAGTCAAATCAACCAATACA
Found at i:6628451 original size:30 final size:29
Alignment explanation
Indices: 6628415--6628473 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 29
6628405 ACTTAACAAG
6628415 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAAC-AAATTAA
*
6628445 CAAATGTCTTTAAAATAATAACAAATTAA
1 CAAATGTCTCTAAAATAATAACAAATTAA
6628474 TAATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.56, C:0.12, G:0.03, T:0.29
Consensus pattern (29 bp):
CAAATGTCTCTAAAATAATAACAAATTAA
Found at i:6634070 original size:198 final size:199
Alignment explanation
Indices: 6633731--6634527 Score: 913
Period size: 198 Copynumber: 4.1 Consensus size: 199
6633721 TACTTTTACC
* ** *
6633731 TTTT-AACCTAAACATCATAATCACAGATGTGTGATCATAAAAACTAAGAAATAAAGATTAAAAT
1 TTTTCAACCTAAACATCATAATCACGGATGCATGATCATAAAAACTAAGAAATAAAGATTAAATT
* * *
6633795 CTA-C-CA--TCTCCTTTAGCATGCTATTTTCCAATTCCAT-GACGGCTGAATGAGATGTTATCG
66 CTATCACATTTCTTCTTCAGCATGCTATTTTCCAATTCCATGGA-GGATGAATGAGATGTTATCG
* *
6633855 AGCTACTATTCGATATTTTCCTCAATAGGAAAGAAGCTTATAGAGAAAAGAGATCGTACA-TTGT
130 AGCTACTATTCGATATTTTCCTCAATAGAAAAGAAGCTTATAGAGAAAAGAGATCGTACAGTGGT
6633919 TTCAA
195 TTCAA
** * *** * *
6633924 TTTTGGACCTAAACATCACAATCATTTATTCATGATCATAAAAACTAAGAAGTAAAGATTAAATT
1 TTTTCAACCTAAACATCATAATCACGGATGCATGATCATAAAAACTAAGAAATAAAGATTAAATT
* * *
6633989 CTATTACATTTCTTCATT-AGCATGCTATTTTCTGAA-TCCATGGAGGATTAATGAGATGTTATC
66 CTATCACATTTCTTC-TTCAGCATGCTATTTTC-CAATTCCATGGAGGATGAATGAGATGTTATC
* * * * *
6634052 GAGCAACTATTCGATATTTTCATCAATAGAAAAGAAGCTTATAGAGAAAAGAAACCTTA-AGTGG
129 GAGCTACTATTCGATATTTTCCTCAATAGAAAAGAAGCTTATAGAGAAAAGAGATCGTACAGTGG
6634116 TTTCAA
194 TTTCAA
** *
6634122 TTTTCAACCTAAACATCATAATCACGGATGCATGATTGTAAAAACTAAGAAATAAAGATCAAATT
1 TTTTCAACCTAAACATCATAATCACGGATGCATGATCATAAAAACTAAGAAATAAAGATTAAATT
* * * * * * *
6634187 CTATCATATTTCTTCTTCAACATGCTAGTTTCCAAATCCATGGTGAATGAATGAGATGTTATCTA
66 CTATCACATTTCTTCTTCAGCATGCTATTTTCCAATTCCATGGAGGATGAATGAGATGTTATCGA
** * * * *
6634252 GCTTTTATTCGATATTTTCTTCACTAGAAAAGAAGCTTATCA-AGAAATGAGATCGT-CAGAGGT
131 GCTACTATTCGATATTTTCCTCAATAGAAAAGAAGCTTAT-AGAGAAAAGAGATCGTACAGTGGT
6634315 TTCAA
195 TTCAA
* * * * *
6634320 TTTTCAACCTAAACAGCATAATCACGGATGCATGATCTTAGAAGCTAAGAAACT-AATATTAAAT
1 TTTTCAACCTAAACATCATAATCACGGATGCATGATCATAAAAACTAAGAAA-TAAAGATTAAAT
* * *
6634384 TCTATCATATTTCTTCTTCAGCATGCTATTTTCCAATTCCATGGTGGATGAATGAGATATTATCG
65 TCTATCACATTTCTTCTTCAGCATGCTATTTTCCAATTCCATGGAGGATGAATGAGATGTTATCG
* * ** * * *
6634449 AGCTGCTATTTGATATTACCCTCGAGA-AAATAGAAGCTTATAGAGAAAAGAGATCGTAAAG-GG
130 AGCTACTATTCGATATTTTCCTCAATAGAAA-AGAAGCTTATAGAGAAAAGAGATCGTACAGTGG
*
6634512 TTTCGA
194 TTTCAA
*
6634518 TTTTGAACCT
1 TTTTCAACCT
6634528 GTTGGAGAAT
Statistics
Matches: 509, Mismatches: 78, Indels: 29
0.83 0.13 0.05
Matches are distributed among these distances:
193 4 0.01
194 53 0.10
196 2 0.00
197 9 0.02
198 431 0.85
199 10 0.02
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (199 bp):
TTTTCAACCTAAACATCATAATCACGGATGCATGATCATAAAAACTAAGAAATAAAGATTAAATT
CTATCACATTTCTTCTTCAGCATGCTATTTTCCAATTCCATGGAGGATGAATGAGATGTTATCGA
GCTACTATTCGATATTTTCCTCAATAGAAAAGAAGCTTATAGAGAAAAGAGATCGTACAGTGGTT
TCAA
Found at i:6636806 original size:18 final size:19
Alignment explanation
Indices: 6636770--6636807 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
6636760 TGAAGTGATA
6636770 ATTTTTTATAATAATTAAT
1 ATTTTTTATAATAATTAAT
6636789 ATTTTTT-TAA-AATATAAT
1 ATTTTTTATAATAAT-TAAT
6636807 A
1 A
6636808 GTTAGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 8 0.44
19 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTTTATAATAATTAAT
Found at i:6637713 original size:15 final size:15
Alignment explanation
Indices: 6637691--6637729 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
6637681 GTTGGGCTAG
*
6637691 TTTTTATATAT-TAA
1 TTTTTATAAATGTAA
6637705 TTATTTATAAATGTAA
1 TT-TTTATAAATGTAA
6637721 TTTTTATAA
1 TTTTTATAA
6637730 TATAATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 15 0.68
16 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTTTATAAATGTAA
Found at i:6637737 original size:14 final size:14
Alignment explanation
Indices: 6637691--6637737 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
6637681 GTTGGGCTAG
6637691 TTTTTAT-ATATTAA
1 TTTTTATAATA-TAA
*
6637705 TTATTTATAAATGTAA
1 TT-TTTAT-AATATAA
6637721 TTTTTATAATATAA
1 TTTTTATAATATAA
6637735 TTT
1 TTT
6637738 ATATGTAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 11 0.39
15 10 0.36
16 5 0.18
17 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTTTATAATATAA
Found at i:6644374 original size:14 final size:14
Alignment explanation
Indices: 6644355--6644384 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6644345 TTATATCGAG
6644355 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
6644369 ACCAATCCAATTCA
1 ACCAATCCAAATCA
6644383 AC
1 AC
6644385 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:6651964 original size:33 final size:33
Alignment explanation
Indices: 6651902--6651964 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
6651892 ACACAATATG
* * *
6651902 GTATTTAAAATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATAAGTAAATATAATA
6651935 GTATTTAAGAATATATACATAAG-AAATATA
1 GTATTTAA-AATATATACATAAGTAAATATA
6651965 TAACTAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (33 bp):
GTATTTAAAATATATACATAAGTAAATATAATA
Found at i:6656119 original size:37 final size:37
Alignment explanation
Indices: 6656023--6656121 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
6656013 TTTTTAATTC
* * * *
6656023 ATTTAATAATAATTATATAAAGAATTTTATTAAATTAT
1 ATTTAATAATAATCATATTAA-AATATGATTAAATTAT
* *
6656061 ATTTAGTAATAATCATGTTAAAATATGATTAAATTAT
1 ATTTAATAATAATCATATTAAAATATGATTAAATTAT
* * *
6656098 TTTTAATAATAGTCTTATTAAAAT
1 ATTTAATAATAATCATATTAAAAT
6656122 TTAATAATAA
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
37 33 0.66
38 17 0.34
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (37 bp):
ATTTAATAATAATCATATTAAAATATGATTAAATTAT
Found at i:6656552 original size:46 final size:44
Alignment explanation
Indices: 6656459--6656552 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 44
6656449 ATTACAACAT
*
6656459 CATTCCATTCAACCAAACATAAGCATTCTATTACAGCTCTATTC
1 CATTCCATTCAACCAAACATAAGAATTCTATTACAGCTCTATTC
*
6656503 CATTCCATTCAACCAAACAGT-TGAATTACTGATTACAGCTCTATTC
1 CATTCCATTCAACCAAACA-TAAGAATT-CT-ATTACAGCTCTATTC
6656549 CATT
1 CATT
6656553 ACAGCTCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 23 0.51
45 3 0.07
46 19 0.42
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (44 bp):
CATTCCATTCAACCAAACATAAGAATTCTATTACAGCTCTATTC
Found at i:6656555 original size:16 final size:16
Alignment explanation
Indices: 6656534--6656604 Score: 124
Period size: 16 Copynumber: 4.4 Consensus size: 16
6656524 TGAATTACTG
6656534 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
6656550 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
6656566 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
6656582 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
6656598 ATTACAG
1 ATTACAG
6656605 TGAACCAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:6657226 original size:48 final size:46
Alignment explanation
Indices: 6657097--6657254 Score: 185
Period size: 46 Copynumber: 3.4 Consensus size: 46
6657087 TCAACTTGTA
* * *
6657097 GCCGATGCATGTCCTAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAAG
* * *
6657143 GCTGATGCATGTCCCAGACATGTCTTATACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAG
* * *
6657189 GCCGATGCCATGTCCCGGACATGGTCTTACACTAGCTCTCGTAAT-ATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCAAG
6657237 GCCGATGCATGTCCCAGA
1 GCCGATGCATGTCCCAGA
6657255 TGTAATACCC
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
46 44 0.46
47 24 0.25
48 26 0.27
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAG
Found at i:6662586 original size:26 final size:25
Alignment explanation
Indices: 6662531--6662587 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
6662521 ATCAAAAATA
*
6662531 CTAAA-AAATTAAAATAAATATTTT
1 CTAAATAAATTAAAATAAATATATT
*
6662555 CT-AATAAATTAAAATATATATATT
1 CTAAATAAATTAAAATAAATATATT
6662579 CTTAAATAA
1 C-TAAATAA
6662588 CACGTGCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 20 0.71
25 1 0.04
26 5 0.18
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (25 bp):
CTAAATAAATTAAAATAAATATATT
Found at i:6665990 original size:20 final size:20
Alignment explanation
Indices: 6665965--6666002 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6665955 ACTTTTGCGT
* *
6665965 CTTTATTTTTATTTTATTTA
1 CTTTATGTTTATTATATTTA
6665985 CTTTATGTTTATTATATT
1 CTTTATGTTTATTATATT
6666003 AATTTAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (20 bp):
CTTTATGTTTATTATATTTA
Found at i:6666026 original size:16 final size:16
Alignment explanation
Indices: 6665994--6666027 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6665984 ACTTTATGTT
**
6665994 TATTATATTAATTTAA
1 TATTATATTAACATAA
6666010 TATTATATTAACATAA
1 TATTATATTAACATAA
6666026 TA
1 TA
6666028 ATTAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTATATTAACATAA
Found at i:6666036 original size:23 final size:21
Alignment explanation
Indices: 6666006--6666049 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
6665996 TTATATTAAT
6666006 TTAATATTATATTAACATAATAA
1 TTAATATT-TATTAA-ATAATAA
*
6666029 TTAATATTTCTTAAATAATAA
1 TTAATATTTATTAAATAATAA
6666050 ATAAATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 5 0.25
23 8 0.40
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAATATTTATTAAATAATAA
Found at i:6666075 original size:23 final size:23
Alignment explanation
Indices: 6666048--6666094 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
6666038 CTTAAATAAT
6666048 AAATAAATACATATATGTATTAC
1 AAATAAATACATATATGTATTAC
* ** *
6666071 AAATATATTTATATATTTATTAC
1 AAATAAATACATATATGTATTAC
6666094 A
1 A
6666095 TATTTATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (23 bp):
AAATAAATACATATATGTATTAC
Found at i:6666102 original size:23 final size:23
Alignment explanation
Indices: 6666058--6666111 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
6666048 AAATAAATAC
*
6666058 ATATATGTATTACAAATATATTT
1 ATATATTTATTACAAATATATTT
* *
6666081 ATATATTTATTACATATTTATTT
1 ATATATTTATTACAAATATATTT
*
6666104 -TATTTTTA
1 ATATATTTA
6666112 CCTCACAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
ATATATTTATTACAAATATATTT
Found at i:6666678 original size:9 final size:8
Alignment explanation
Indices: 6666657--6666681 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
6666647 TTAGTGTCGA
6666657 GAAAAATT
1 GAAAAATT
6666665 GAAAAATT
1 GAAAAATT
6666673 GAAAAATT
1 GAAAAATT
6666681 G
1 G
6666682 TTTGACTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (8 bp):
GAAAAATT
Found at i:6669404 original size:159 final size:162
Alignment explanation
Indices: 6669179--6669492 Score: 442
Period size: 159 Copynumber: 2.0 Consensus size: 162
6669169 AAAAATTAGA
* * *
6669179 GAGTGTTATTTTTTACGGATTTGCTTGTTGTCTTCAAGGTGTCACTTTCAGTAAGTTCTTTGATT
1 GAGTGTTATTTTTTACGGAGTTGCTTGTTGTCTTCAAGGTGTCACTTTCAGTAAATTCATTGATT
* *
6669244 TGCTTTTTAGTTATTTCA-T-ATGGCTTCCTGATTTTAAGTGTCA-TTTGACTTCAATTTGGATT
66 TGCTTTTTAGTTATTTCATTCATGGCTTCCTAATTTTAAGGGT-AGTTTGACTT-AATTTGGATT
6669306 TGCATCTGCTTTTCTGAA-TCTTTTTTTAAATTG
129 TGCATCTGCTTTTCTGAATTCTTTTTTTAAATTG
* * **
6669339 GAGTGTTA-TTTTTACGGAGTTGCTTGTTGTTTTGAAGGTGTCACTTTTTGTAAATT-ATTGAAT
1 GAGTGTTATTTTTTACGGAGTTGCTTGTTGTCTTCAAGGTGTCACTTTCAGTAAATTCATTG-AT
* * *
6669402 TTGCTTTTTATTTATTTCATTCATGGCTTCCTAATTTTAAGGGTAGTTTGAGTTAGTTTGGATTT
65 TTGCTTTTTAGTTATTTCATTCATGGCTTCCTAATTTTAAGGGTAGTTTGACTTAATTTGGATTT
*
6669467 GCATTTGCTTTTCTGAATTCTTTTTT
130 GCATCTGCTTTTCTGAATTCTTTTTT
6669493 CTTTTTGAAA
Statistics
Matches: 136, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
158 3 0.02
159 62 0.46
160 36 0.26
161 35 0.26
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.52
Consensus pattern (162 bp):
GAGTGTTATTTTTTACGGAGTTGCTTGTTGTCTTCAAGGTGTCACTTTCAGTAAATTCATTGATT
TGCTTTTTAGTTATTTCATTCATGGCTTCCTAATTTTAAGGGTAGTTTGACTTAATTTGGATTTG
CATCTGCTTTTCTGAATTCTTTTTTTAAATTG
Found at i:6676401 original size:146 final size:146
Alignment explanation
Indices: 6676030--6676420 Score: 435
Period size: 146 Copynumber: 2.6 Consensus size: 146
6676020 TTTTGGATAT
* * * *
6676030 TAGGTTGCATGACGGGGGGAAGGATGTTCCTGGAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
1 TAGGTTGCATGACAGGGGGAAGGAAGTTCCAGAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
* * **** * *
6676095 AATAAAATTACCACGTT-AGAGGCTGTTTTCGAGGTCATTGTTAACTTAATGGGTGTAATGTTTT
66 AATAAAGTTACCA--TTCACA---TGCCAACCAGGTCATTGTTAACTTAAGGGGTGTAATGTTTT
* *
6676159 GATATTTCAGGGTAGTTTTGG
126 GATATTTCAGGATAGCTTTGG
* ** * *
6676180 TAGGTTGCGTGACAGGGGGAAGGAAGTTCAGATTTCAGAAGGCTACTTAAATTTTTACTAAGCAT
1 TAGGTTGCATGACAGGGGGAAGGAAGTTC------CAGAAGGCTACAAAAATTTTGACTAAGCTT
* * * * *
6676245 TTTCCAAATAAAGTTACCATTCATATGCCAACCATGTTATTGTTAATTTAAGGGGTGTGATGTTT
60 TTTCCAAATAAAGTTACCATTCACATGCCAACCAGGTCATTGTTAACTTAAGGGGTGTAATGTTT
*
6676310 TGCTATTTTCAGGATAGCTTTGG
125 TGATA-TTTCAGGATAGCTTTGG
6676333 TAGGTTGCATGACAGGGGGAAGGAAGTTCC-GAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
1 TAGGTTGCATGACAGGGGGAAGGAAGTTCCAGAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
6676397 AATAAAGTTACCATTCACATGCCA
66 AATAAAGTTACCATTCACATGCCA
6676421 CAGGTCCGTA
Statistics
Matches: 203, Mismatches: 30, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
146 53 0.26
147 1 0.00
150 26 0.13
152 34 0.17
153 43 0.21
154 2 0.01
155 2 0.01
156 42 0.21
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (146 bp):
TAGGTTGCATGACAGGGGGAAGGAAGTTCCAGAAGGCTACAAAAATTTTGACTAAGCTTTTTCCA
AATAAAGTTACCATTCACATGCCAACCAGGTCATTGTTAACTTAAGGGGTGTAATGTTTTGATAT
TTCAGGATAGCTTTGG
Found at i:6679211 original size:16 final size:16
Alignment explanation
Indices: 6679192--6679225 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
6679182 CAGAAAACTA
*
6679192 TTTTTCTTT-TTTCCT
1 TTTTTCTTTACTTCCT
6679207 TTTTTCTTTACTTCCT
1 TTTTTCTTTACTTCCT
6679223 TTT
1 TTT
6679226 GATGCAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCTTTACTTCCT
Found at i:6681553 original size:15 final size:15
Alignment explanation
Indices: 6681533--6681561 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6681523 TTTTTCTACT
6681533 ATAATTGATAGGTAG
1 ATAATTGATAGGTAG
6681548 ATAATTGATAGGTA
1 ATAATTGATAGGTA
6681562 TAGTTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.34
Consensus pattern (15 bp):
ATAATTGATAGGTAG
Found at i:6698445 original size:3 final size:3
Alignment explanation
Indices: 6698434--6698491 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
6698424 CAATAATACC
* * * *
6698434 AAT ACT AAT AAT AGT AAA AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6698482 AAT AAT AAT A
1 AAT AAT AAT A
6698492 GCAAAAGTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6698988 original size:12 final size:12
Alignment explanation
Indices: 6698971--6698998 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
6698961 AGCTCCAGTC
6698971 GCCGTCCGTCGT
1 GCCGTCCGTCGT
6698983 GCCGTCCGTCGT
1 GCCGTCCGTCGT
6698995 GCCG
1 GCCG
6698999 GCATTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:6700126 original size:43 final size:43
Alignment explanation
Indices: 6700068--6700223 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 43
6700058 GATCTGAAAT
*
6700068 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGA
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
* * * *
6700111 CTTCAATGTACTCCACTG-TAGTCACAGGGAGGTAGAATCTGCCATCTATGA
1 CTTCAATCTACTCCACTGCCA-AC-CAGGGAGATAGAAT-T---ATC---GA
* *
6700162 TCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGG
1 -CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
*
6700206 CTTCAATATACTCCACTG
1 CTTCAATCTACTCCACTG
6700224 TAGTCACAGT
Statistics
Matches: 89, Mismatches: 13, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
42 1 0.01
43 33 0.37
44 14 0.16
45 1 0.01
47 3 0.03
48 3 0.03
50 1 0.01
51 15 0.17
52 17 0.19
53 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
Found at i:6700229 original size:95 final size:95
Alignment explanation
Indices: 6700066--6700245 Score: 324
Period size: 95 Copynumber: 1.9 Consensus size: 95
6700056 AAGATCTGAA
*
6700066 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
*
6700131 GTCACAGGGAGGTAGAATCTGCCATCTATG
66 GTCACAGGGAGGTAAAATCTGCCATCTATG
*
6700161 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCAATATACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
*
6700226 GTCACAGTGAGGTAAAATCT
66 GTCACAGGGAGGTAAAATCT
6700246 CTGGCTTTAG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 81 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
GTCACAGGGAGGTAAAATCTGCCATCTATG
Found at i:6700716 original size:88 final size:88
Alignment explanation
Indices: 6700426--6701116 Score: 936
Period size: 88 Copynumber: 7.9 Consensus size: 88
6700416 TGTAACCTTT
* ** * * *
6700426 AACCAGCTCCAAT-GCAACCGATGGAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAATG
1 AACCAGCTCC-ATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATG
** *
6700488 CAGGAAGGCAAGATCTGCT-TCTTT
64 CAGGAAGGCAAGATCTTTTGTCTTC
* * * ** * *
6700512 AACTAGCTCCA-CTGCAATCGATGGATGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATG
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATG
* * ** *
6700574 TAGGAAGGTAAGATCTGCT-TCTTT
64 CAGGAAGGCAAGATCTTTTGTCTTC
* * *
6700598 AACCAGCTCCA-CTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGC
1 AACCAGCTCCATC-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGC
6700662 AGGAAGGCAAGATCTTTTGTCTTC
65 AGGAAGGCAAGATCTTTTGTCTTC
*
6700686 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
6700751 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
*
6700774 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCAATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
6700839 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
6700862 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
*
6700927 GAAAGGCAAGATCTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
*
6700950 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
6701015 GGAAGGCAAG--CTTTTGTCTTC
66 GGAAGGCAAGATCTTTTGTCTTC
* * * * * *
6701036 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTATGTCTTCAACCTGTTTCACTGTCAATGCA
1 AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
6701101 GGAAGGCAAGATCTTT
66 GGAAGGCAAGATCTTT
6701117 AACTTCATTG
Statistics
Matches: 559, Mismatches: 38, Indels: 14
0.91 0.06 0.02
Matches are distributed among these distances:
85 6 0.01
86 182 0.33
87 35 0.06
88 335 0.60
89 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (88 bp):
AACCAGCTCCATCACAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCA
GGAAGGCAAGATCTTTTGTCTTC
Found at i:6701495 original size:53 final size:53
Alignment explanation
Indices: 6701432--6701537 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
6701422 ACAAAATTTG
6701432 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
1 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
6701485 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
1 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
6701538 CCTCTTTTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (53 bp):
TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
Found at i:6703312 original size:7 final size:8
Alignment explanation
Indices: 6703287--6703316 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
6703277 CTATTTTGAC
6703287 TTTGATTTT
1 TTTGA-TTT
6703296 TTTGATTT
1 TTTGATTT
6703304 TTTGATTT
1 TTTGATTT
6703312 TTTGA
1 TTTGA
6703317 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:6708238 original size:38 final size:37
Alignment explanation
Indices: 6708203--6708275 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 37
6708193 TATATATACT
6708203 TATAAAAATAA-AAATAT-GTATATGTATATAGATATA
1 TATAAAAA-AAGAAATATAGTATATGTATATAGATATA
*
6708239 TATAAAAAAAGAAATATGAGTATATGTATATATATAT
1 TATAAAAAAAGAAATAT-AGTATATGTATATAGATAT
6708276 TAAACAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 2 0.06
36 14 0.42
38 17 0.52
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.36
Consensus pattern (37 bp):
TATAAAAAAAGAAATATAGTATATGTATATAGATATA
Found at i:6708275 original size:36 final size:34
Alignment explanation
Indices: 6708192--6708279 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 34
6708182 ATACATATAA
6708192 ATATATATACTTATAAAAATAAAAATATGTATATGT
1 ATATATATA--TATAAAAATAAAAATATGTATATGT
6708228 ATATAGATATATATAAAAA-AAGAAATATGAGTATATGT
1 ATAT--ATATATATAAAAATAA-AAATAT--GTATATGT
6708266 ATATATATAT-TAAA
1 ATATATATATATAAA
6708280 CAAATTATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
35 6 0.13
36 24 0.51
38 17 0.36
ACGTcount: A:0.55, C:0.01, G:0.08, T:0.36
Consensus pattern (34 bp):
ATATATATATATAAAAATAAAAATATGTATATGT
Found at i:6708417 original size:3 final size:3
Alignment explanation
Indices: 6708406--6708463 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
6708396 CAATAATACC
* * * *
6708406 AAT ACT AAT AAT AGT AAA AAT GAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6708454 AAT AAT AAT A
1 AAT AAT AAT A
6708464 GCAAAAGTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6708960 original size:12 final size:12
Alignment explanation
Indices: 6708943--6708970 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
6708933 AGCTCCAGTC
6708943 GCCGTCCGTCGT
1 GCCGTCCGTCGT
6708955 GCCGTCCGTCGT
1 GCCGTCCGTCGT
6708967 GCCG
1 GCCG
6708971 GCATTGCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.43, G:0.36, T:0.21
Consensus pattern (12 bp):
GCCGTCCGTCGT
Found at i:6711320 original size:13 final size:13
Alignment explanation
Indices: 6711302--6711376 Score: 87
Period size: 13 Copynumber: 5.8 Consensus size: 13
6711292 TTTGGCAATA
6711302 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
6711315 CTTTTGAAGAGTG
1 CTTTTGAAAAGTG
*
6711328 CTGTTGAAAAGTG
1 CTTTTGAAAAGTG
* * *
6711341 TTTTTGAGAAGTA
1 CTTTTGAAAAGTG
*
6711354 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
*
6711367 CTTTGGAAAA
1 CTTTTGAAAA
6711377 ATTTAAGTGT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.29, C:0.07, G:0.27, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:6721530 original size:127 final size:127
Alignment explanation
Indices: 6721297--6721592 Score: 407
Period size: 127 Copynumber: 2.3 Consensus size: 127
6721287 CGAAAACCGG
* * * *
6721297 AACCCAGCATGGTAGGGCACAATTCCTCGAATTTCCAAACATTGAACATTGACTTGCTTTAGAAT
1 AACCCAGCACGATAGGGCACAATTCCTCGAATTTCCAAACATTGAACATTAACTTGCTTTAAAAT
* * *
6721362 TTAGAAAACCAGAGTGAAATTCAAAAGGAATATTTGGTTATTTTGAACAAATAGGAAATCAA
66 TTAGAAAACCAGAGTGAAATTCAAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCAA
* * * * *
6721424 AACCCAGCACGATAGGGCACGATTCCCCGAATTTTCAAACATTGAATA-TAACCTTGTTTTAAAA
1 AACCCAGCACGATAGGGCACAATTCCTCGAATTTCCAAACATTGAACATTAA-CTTGCTTTAAAA
* * * *
6721488 TTTGGGAAACGC-GAGTGAAATTCTAAAGGAATATTCGATTATTTTGAGCAAACAGGAAATCAA
65 TTTAGAAAAC-CAGAGTGAAATTCAAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCAA
*
6721551 AACCCAGCACGATAGGGCACAATTTCTCGAATTTCCAAACAT
1 AACCCAGCACGATAGGGCACAATTCCTCGAATTTCCAAACAT
6721593 CAAACATTGC
Statistics
Matches: 147, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
126 2 0.01
127 144 0.98
128 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (127 bp):
AACCCAGCACGATAGGGCACAATTCCTCGAATTTCCAAACATTGAACATTAACTTGCTTTAAAAT
TTAGAAAACCAGAGTGAAATTCAAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCAA
Found at i:6722495 original size:19 final size:20
Alignment explanation
Indices: 6722456--6722497 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
6722446 TAATGACTTT
6722456 CAAAATAATAATTTTATAAA
1 CAAAATAATAATTTTATAAA
6722476 CAAAA-AATAAATTTTA-AAA
1 CAAAATAAT-AATTTTATAAA
6722495 CAA
1 CAA
6722498 TGATTTAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (20 bp):
CAAAATAATAATTTTATAAA
Found at i:6737773 original size:178 final size:178
Alignment explanation
Indices: 6737301--6738036 Score: 1005
Period size: 178 Copynumber: 4.2 Consensus size: 178
6737291 TTCACAGATT
*
6737301 TTATCTCCATGTATCGACTATGGAGCAAATCGAAAAA-GGCGAATCTTATCTCCATGTATCGGCT
1 TTATCTCCATGTATCGACTATGGAGCAGATC-AAAAATGGCGAATCTTATCTCCATGTATCGGCT
* * *
6737365 ATGGAGTAAATTTCAGCCACCAGCCTTATTTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
65 ATGGAGCAGATTTCAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
*
6737430 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGAAATTACAGGTC
130 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGGTC
* * **
6737479 TTATCTCCATGTACCGAC-ATGAAGCAGATTGAAAATGGCGAATCTTATCTCCATGTATCGGCTA
1 TTATCTCCATGTATCGACTATGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGGCTA
* * *
6737543 TAGAGCAGATTTCAGCTACCAGCCTTATCTCTCTGAGGTAGCAAGGGAGCAGGTTGAAGATACAA
66 TGGAGCAGATTTCAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAA
* * * *
6737608 GTCTTATATTCCTAAGGTAGTAAAGAAGCAGACTGAAAATTACAGGTC
131 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGGTC
* * * **
6737656 TTGTCTCCATGTATCGGCTATGGAGGAGATCAAAAATGGCGAATCTTATCTTTATGTATCGGCTA
1 TTATCTCCATGTATCGACTATGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGGCTA
* *
6737721 TGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCGAGAGAGCAGGTTGAAGATACAA
66 TGGAGCAGATTTCAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAA
6737786 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGGTC
131 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGGTC
* * * * *
6737834 TTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAATCTTTTCTTCATGTATCGGTTA
1 TTATCTCCATGTATCGACTATGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGGCTA
*
6737899 TGGAGTAGATTTCAGCCACCAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCA----G--
66 TGGAGCAGATTT-------CAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
* *
6737958 G-T-----TCTTATCTTCCCGAGGTAGCAGGGAAGCAGACTGAAAATTACAGGTC
124 GATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGGTC
* *
6738007 TTATCTTCATGTATCGGCTATGGAGCAGAT
1 TTATCTCCATGTATCGACTATGGAGCAGAT
6738037 TTTAGCCACC
Statistics
Matches: 503, Mismatches: 46, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
173 74 0.15
176 4 0.01
177 154 0.31
178 232 0.46
179 1 0.00
181 1 0.00
185 37 0.07
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (178 bp):
TTATCTCCATGTATCGACTATGGAGCAGATCAAAAATGGCGAATCTTATCTCCATGTATCGGCTA
TGGAGCAGATTTCAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAA
GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTACAGGTC
Found at i:6737816 original size:44 final size:46
Alignment explanation
Indices: 6737744--6737839 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 46
6737734 AGCCACCAGC
* ** *
6737744 CTTATC-TCTCTGAGGTAGCGAGAGAGCAGGTTGAAGA-TACAAGT
1 CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAAATTACAAGT
*
6737788 CTTATCTTC-CTGAGGTAGCAAG-GAAGCAGACTGAAAATTACAGGT
1 CTTATCTTCTCTGAGGTAGCAAGAG-AGCAGACTGAAAATTACAAGT
6737833 CTTATCT
1 CTTATCT
6737840 CCATGTATCG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 28 0.64
45 15 0.34
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGAGAGCAGACTGAAAATTACAAGT
Found at i:6739554 original size:32 final size:32
Alignment explanation
Indices: 6739457--6739562 Score: 88
Period size: 32 Copynumber: 3.2 Consensus size: 32
6739447 TTACTCTAAG
* ** *
6739457 TATACATTATTGATTTCCTATTATTTTACGTA
1 TATATATTATTGATTTTATATTATTTTATGTA
* * * *
6739489 AATAT-TTCCTTTGATTTTTTATTTTTTTATATGTA
1 TATATATT--ATTGATTTTATA-TTATTT-TATGTA
6739524 TATATATTATTGATTTTATATTATTTTATGTA
1 TATATATTATTGATTTTATATTATTTTATGTA
*
6739556 TGTATAT
1 TATATAT
6739563 CTTCTTCTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
31 2 0.04
32 15 0.26
33 14 0.25
34 15 0.26
35 9 0.16
36 2 0.04
ACGTcount: A:0.27, C:0.06, G:0.07, T:0.60
Consensus pattern (32 bp):
TATATATTATTGATTTTATATTATTTTATGTA
Done.