Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 192 of 290
Found at i:61567656 original size:20 final size:21
Alignment explanation
Indices: 61567631--61567669 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
61567621 TCCTTAAAAT
61567631 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
61567651 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
61567670 ACCAACTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:61568865 original size:48 final size:45
Alignment explanation
Indices: 61568704--61568909 Score: 137
Period size: 48 Copynumber: 4.4 Consensus size: 45
61568694 GTACCGATGC
* * * * * *
61568704 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCTCAT-GCCAATG
* * *
61568751 CATGTCCCAGACATGTCTTACACTGGCT-TACGTTTCGAGGCCGATTTG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTC-ATGCC-A-ATG
** * *
61568799 TGTGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCGTCTC-ATGCCAATG
* * * * *
61568845 CCATGTCCCAGACATGGTCTTACGCTGGCTCTCATAAT-GTGGCCACTG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCAT-GCCAATG
61568893 CATGTCCCAGACATGTC
1 CATGTCCCAGACATGTC
61568910 AAACACTAGC
Statistics
Matches: 125, Mismatches: 25, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
45 1 0.01
46 24 0.19
47 41 0.33
48 57 0.46
49 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCATGCCAATG
Found at i:61573071 original size:22 final size:23
Alignment explanation
Indices: 61573045--61573090 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
61573035 CAACCAAACC
61573045 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
61573067 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
61573090 A
1 A
61573091 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:61573096 original size:23 final size:23
Alignment explanation
Indices: 61573052--61573096 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
61573042 ACCAATTCAA
*
61573052 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
61573075 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
61573097 CACATGCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:61574602 original size:20 final size:20
Alignment explanation
Indices: 61574577--61574618 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
61574567 AATTCATTAT
61574577 ATCTCATGATTTACAGATCC
1 ATCTCATGATTTACAGATCC
*
61574597 ATCTCATGATTTATAGATCC
1 ATCTCATGATTTACAGATCC
61574617 AT
1 AT
61574619 TGCTTACACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
ATCTCATGATTTACAGATCC
Found at i:61580336 original size:22 final size:23
Alignment explanation
Indices: 61580311--61580356 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
61580301 CAACCAAACC
61580311 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
61580333 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
61580356 A
1 A
61580357 CATCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:61581972 original size:20 final size:20
Alignment explanation
Indices: 61581947--61581985 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
61581937 AATTCATTAT
61581947 ATCTCATGATTTACAGATCC
1 ATCTCATGATTTACAGATCC
61581967 ATCTCATGATTTACAGATC
1 ATCTCATGATTTACAGATC
61581986 ATTGCTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCTCATGATTTACAGATCC
Found at i:61587495 original size:26 final size:27
Alignment explanation
Indices: 61587453--61587504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
61587443 ATTTATACAT
61587453 CTCATAAGGGCATAATAGTCATTTTAC
1 CTCATAAGGGCATAATAGTCATTTTAC
61587480 CTCATAA-GGCATAATAGTCATTTTA
1 CTCATAAGGGCATAATAGTCATTTTA
61587505 TTAATTTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (27 bp):
CTCATAAGGGCATAATAGTCATTTTAC
Found at i:61597724 original size:27 final size:27
Alignment explanation
Indices: 61597694--61597748 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
61597684 ATTGGGTATG
61597694 GATTGGTTGACACTACATGATGCTATA
1 GATTGGTTGACACTACATGATGCTATA
*
61597721 GATTGGTTGACACTTCATGATGCTATA
1 GATTGGTTGACACTACATGATGCTATA
61597748 G
1 G
61597749 TAAATTGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (27 bp):
GATTGGTTGACACTACATGATGCTATA
Found at i:61608757 original size:27 final size:27
Alignment explanation
Indices: 61608727--61608784 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
61608717 ATAATTTATG
*
61608727 AAATTACCGAAATACCCTTGTAGTG-TA
1 AAATTACCGAAATACCCATGTAG-GATA
*
61608754 AAATTACTGAAATACCCATGTAGGATA
1 AAATTACCGAAATACCCATGTAGGATA
61608781 AAAT
1 AAAT
61608785 GACTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.28
Consensus pattern (27 bp):
AAATTACCGAAATACCCATGTAGGATA
Found at i:61612494 original size:8 final size:8
Alignment explanation
Indices: 61612475--61612506 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
61612465 AGGCCAAATA
61612475 GGCCCGGTG
1 GGCCC-GTG
61612484 GGCCCGTG
1 GGCCCGTG
61612492 GGCCCGTG
1 GGCCCGTG
61612500 GGCCCGT
1 GGCCCGT
61612507 TTATGAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.78
9 5 0.22
ACGTcount: A:0.00, C:0.38, G:0.50, T:0.12
Consensus pattern (8 bp):
GGCCCGTG
Found at i:61613115 original size:27 final size:25
Alignment explanation
Indices: 61613078--61613186 Score: 96
Period size: 27 Copynumber: 4.2 Consensus size: 25
61613068 TCGTTAAAAC
*
61613078 CCCTGATTTGTGAAATTACTGAAATA
1 CCCTGA-TTGTAAAATTACTGAAATA
61613104 CCCTAGCATTGTAAAATTA-TCGAAATA
1 CCCT-G-ATTGTAAAATTACT-GAAATA
*
61613131 TCCCTGA-TGTGAAATTACTGAAATA
1 -CCCTGATTGTAAAATTACTGAAATA
* **
61613156 CCCTTGTAGTGTAAAATTACAAAAATA
1 CCC-TG-ATTGTAAAATTACTGAAATA
61613183 CCCT
1 CCCT
61613187 TGTAGGGTAA
Statistics
Matches: 70, Mismatches: 5, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
24 3 0.04
25 17 0.24
26 9 0.13
27 36 0.51
28 5 0.07
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (25 bp):
CCCTGATTGTAAAATTACTGAAATA
Found at i:61613182 original size:52 final size:51
Alignment explanation
Indices: 61613086--61613186 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 51
61613076 ACCCCTGATT
* *
61613086 TGTGAAATTACTGAAATACCCTAGCATTGTAAAATTATCGAAATATCCCTGA
1 TGTGAAATTACTGAAATACCCTAGCAGTGTAAAATTATCAAAATA-CCCTGA
* *
61613138 TGTGAAATTACTGAAATACCCTTGTAGTGTAAAATTA-CAAAAATACCCT
1 TGTGAAATTACTGAAATACCCTAGCAGTGTAAAATTATC-AAAATACCCT
61613187 TGTAGGGTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 5 0.11
52 39 0.89
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.31
Consensus pattern (51 bp):
TGTGAAATTACTGAAATACCCTAGCAGTGTAAAATTATCAAAATACCCTGA
Found at i:61613187 original size:27 final size:27
Alignment explanation
Indices: 61613142--61613199 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
61613132 CCCTGATGTG
** *
61613142 AAATTACTGAAATACCCTTGTAGTGTA
1 AAATTACAAAAATACCCTTGTAGGGTA
61613169 AAATTACAAAAATACCCTTGTAGGGTA
1 AAATTACAAAAATACCCTTGTAGGGTA
61613196 AAAT
1 AAAT
61613200 GACCGTTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (27 bp):
AAATTACAAAAATACCCTTGTAGGGTA
Found at i:61616191 original size:22 final size:22
Alignment explanation
Indices: 61616163--61616206 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
61616153 CTGAGAAAGG
61616163 GCTATGAAGCTTATCTTGCCTT
1 GCTATGAAGCTTATCTTGCCTT
61616185 GCTATGAAGCTTATCTTGCCTT
1 GCTATGAAGCTTATCTTGCCTT
61616207 TGTGTTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (22 bp):
GCTATGAAGCTTATCTTGCCTT
Found at i:61632902 original size:40 final size:40
Alignment explanation
Indices: 61632843--61633035 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
61632833 CATTTGAATG
* * *
61632843 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
61632883 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * * *
61632923 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* ** * * *
61632963 TTATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
61633003 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT
61633036 TGTGGTTATA
Statistics
Matches: 124, Mismatches: 27, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.02
40 120 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:61632983 original size:80 final size:80
Alignment explanation
Indices: 61632847--61633035 Score: 297
Period size: 80 Copynumber: 2.4 Consensus size: 80
61632837 TGAATGATAT
* **
61632847 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGAACTAAGACCCGAAGGCATTTG
* *
61632912 TGCGAGTTGCTATAC
66 TGCGAGTTACTAAAC
* *
61632927 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGAACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGAACTAAGACCCGAAGGCATTTG
*
61632992 TGCGAGTTACTAAAT
66 TGCGAGTTACTAAAC
*
61633007 CCGGGCTAAGACCCGAAGGCATTTGTGCT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT
61633036 TGTGGTTATA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGAACTAAGACCCGAAGGCATTTG
TGCGAGTTACTAAAC
Found at i:61646897 original size:42 final size:42
Alignment explanation
Indices: 61646838--61646951 Score: 167
Period size: 43 Copynumber: 2.7 Consensus size: 42
61646828 TTTGAAATTA
61646838 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGA-CTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATC-T
*
61646880 CGTGTAAGACCATATCTGGGCTATTGGCATCGATATGAGATCT
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATCT
* * *
61646923 CATGTAAGACTATATCTAGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATATGGCAT
61646952 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
42 28 0.43
43 36 0.55
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCT
Found at i:61661176 original size:42 final size:41
Alignment explanation
Indices: 61661072--61661219 Score: 147
Period size: 41 Copynumber: 3.6 Consensus size: 41
61661062 TCCGACTCTT
* * *
61661072 AGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCAGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAG-TCCGATTATG
* * ** * *
61661113 ACCACTAGCTCGCAGGCCCTTCGGAACTAAGTCCGATTATG
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGATTATG
* * *
61661154 A-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGATTATG
61661196 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
61661220 GACCAAGCTC
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
40 15 0.17
41 38 0.44
42 24 0.28
43 9 0.10
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGATTATG
Found at i:61664799 original size:79 final size:79
Alignment explanation
Indices: 61664638--61664861 Score: 226
Period size: 79 Copynumber: 2.8 Consensus size: 79
61664628 TTGAATGATG
* * * * * *
61664638 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCAATTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
61664700 TTTGTGCGAGATACATA
63 TTTGTGCGAGATACAAA
* *
61664717 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCAATTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
61664779 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATAC-AAA
** * *
61664796 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
61664861 G
66 G
61664862 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
78 24 0.19
79 74 0.60
80 25 0.20
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGTCCCGAAGGCAATTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACAAA
Found at i:61664875 original size:40 final size:40
Alignment explanation
Indices: 61664639--61664861 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
61664629 TGAATGATGT
* * * *
61664639 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
61664679 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-ATAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
61664718 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
61664758 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
61664796 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61664837 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61664862 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
39 74 0.45
40 79 0.48
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:61664883 original size:79 final size:77
Alignment explanation
Indices: 61664691--61664894 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 77
61664681 GGACTAAGAT
* *
61664691 CCGAAGGCATTTGTGCGAGATAC-ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTATATCCGG-TTAAG-TCCGAAGGCAATTGTGCGAGATACTA
*
61664755 ATTCCGGGCTAAGC
64 ATACCGGGCTAAGC
* * *
61664769 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACTATATCC-GGTTAAGT-CCGAAGGCAATTGTGCGAGATACTA
*
61664833 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
** *
61664849 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTGCGAGATA-CTATATCCGGTT-AAGTCCGAAGG
61664895 TACGTGATTT
Statistics
Matches: 108, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
78 25 0.23
79 53 0.49
80 30 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTATATCCGGTTAAGTCCGAAGGCAATTGTGCGAGATACTAAT
ACCGGGCTAAGC
Found at i:61672074 original size:79 final size:78
Alignment explanation
Indices: 61671943--61672112 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 78
61671933 GGACTAAGAT
*
61671943 CCGAAGGCATTTGTGCGAGATACTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-A
1 CCGAAGGCATTTGTGCGAGATACTATCCGGACTAAGATCCGAAGGCAATTGTGCGAGATACTATA
*
61672007 TTCCGGGCTAAG-C
66 -ACCGGGCTAAGTC
* ** *
61672020 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGTGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATACT--ATCCGGACTAAGAT-CCGAAGGCAATTGTGCGAGATACT
*
61672084 ATAACCGGGCTATGTC
63 ATAACCGGGCTAAGTC
61672100 CCGAAGGCATTTG
1 CCGAAGGCATTTG
61672113 AACGAGTAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
77 23 0.28
78 1 0.01
79 42 0.52
80 15 0.19
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTATCCGGACTAAGATCCGAAGGCAATTGTGCGAGATACTATA
ACCGGGCTAAGTC
Found at i:61672126 original size:40 final size:40
Alignment explanation
Indices: 61671891--61672112 Score: 235
Period size: 40 Copynumber: 5.6 Consensus size: 40
61671881 TGAATGATGT
* * * *
61671891 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
61671931 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAT--
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
61671969 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
61672009 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
61672047 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
61672088 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
61672113 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 37 0.23
39 34 0.21
40 79 0.49
41 10 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:61672134 original size:79 final size:79
Alignment explanation
Indices: 61671943--61672145 Score: 202
Period size: 79 Copynumber: 2.6 Consensus size: 79
61671933 GGACTAAGAT
** * ** *
61671943 CCGAAGGCATTTGTGCGAGATACT--ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAATTGTGCGAGATACT
*
61672005 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * *
61672020 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
61672084 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
61672100 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
61672146 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
77 23 0.21
78 3 0.03
79 56 0.52
80 25 0.23
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:61679117 original size:41 final size:40
Alignment explanation
Indices: 61679068--61679237 Score: 152
Period size: 41 Copynumber: 4.2 Consensus size: 40
61679058 AGTCCGACTC
61679068 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
** * *
61679107 TTAGACCACTGGCTCGCAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
61679147 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
*
61679192 TTAG-CACTGGCTCAAAAGCCCTTCAAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
61679231 TTTAGAC
1 -TTAGAC
61679238 CCCGATTAGC
Statistics
Matches: 105, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 50 0.48
42 18 0.17
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:61679181 original size:42 final size:41
Alignment explanation
Indices: 61679070--61679215 Score: 154
Period size: 41 Copynumber: 3.5 Consensus size: 41
61679060 TCCGACTCTT
* *
61679070 AGCACTGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATG
* ** * *
61679111 ACCACTGGCTCGCAGGCCCTTCGGAACTAAGTCCGGTTATG
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
* *
61679152 A-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGGTTATG
61679194 AGCACTGGCTCAAAAGCCCTTC
1 AGCACTGGCTCAAAAGCCCTTC
61679216 AAGACCAAGC
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
40 12 0.14
41 40 0.46
42 26 0.30
43 9 0.10
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
Found at i:61691268 original size:14 final size:14
Alignment explanation
Indices: 61691247--61691305 Score: 91
Period size: 14 Copynumber: 4.2 Consensus size: 14
61691237 GGTAAAATAT
61691247 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
*
61691261 TTTTTGGAAAATGA
1 TTTCTGGAAAATGA
*
61691275 TTTCTAGAAAATGA
1 TTTCTGGAAAATGA
*
61691289 TTTCTGAAAAATGA
1 TTTCTGGAAAATGA
61691303 TTT
1 TTT
61691306 ACTTTTCTGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 40 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:61691460 original size:36 final size:38
Alignment explanation
Indices: 61691387--61691460 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
61691377 CCGGATAAGC
* *
61691387 TATTTTTACATATATATTAATAAATTTATATTTTAAAT
1 TATTTTTACATATATATCAATAAATTTATATTATAAAT
*
61691425 TATTTTTACATATAT-TGCAAT-GATTTAT-TTATAAAT
1 TATTTTTACATATATAT-CAATAAATTTATATTATAAAT
61691461 AAATTAATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 7 0.22
37 7 0.22
38 18 0.56
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (38 bp):
TATTTTTACATATATATCAATAAATTTATATTATAAAT
Found at i:61693109 original size:18 final size:18
Alignment explanation
Indices: 61693083--61693146 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
61693073 ATTGAAACTT
*
61693083 CAACTTATAAATGAACAA
1 CAACATATAAATGAACAA
61693101 CAACATATAAATGAACAA
1 CAACATATAAATGAACAA
*
61693119 CAAC-TCCCTAAA-GAACAA
1 CAACAT--ATAAATGAACAA
61693137 CAACATATAA
1 CAACATATAA
61693147 CTTATTTCAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.56, C:0.22, G:0.05, T:0.17
Consensus pattern (18 bp):
CAACATATAAATGAACAA
Found at i:61693901 original size:48 final size:47
Alignment explanation
Indices: 61693828--61693921 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 47
61693818 TTTAGATCAG
61693828 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCATACCCAAAAACCAATT
1 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCATACCC-AAAACCAATT
* *
61693876 TCAGGGAAAAGAAGAAGAAGCAGAAAAAGCCGTACCCAAAACCAAT
1 TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCATACCCAAAACCAAT
61693922 CTTACAGAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
47 9 0.20
48 35 0.80
ACGTcount: A:0.54, C:0.18, G:0.20, T:0.07
Consensus pattern (47 bp):
TCAGGGAAAAGAAGAAGAAGAAGAAAAAGCCATACCCAAAACCAATT
Found at i:61698822 original size:30 final size:30
Alignment explanation
Indices: 61698807--61699023 Score: 268
Period size: 30 Copynumber: 7.4 Consensus size: 30
61698797 AACCAAAATG
*
61698807 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
61698837 AGAATCAGAATCA-ATATTAGTAACAGAATT
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
61698867 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
61698897 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
* *
61698922 AGAATCAGAATCAGAATCAGTAATAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
61698952 AGAATCAGAATCAGTATTCGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* * *
61698982 AGAACCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
61699013 AGAATCAGAAT
1 AGAATCAGAAT
61699024 GCAATCCCAA
Statistics
Matches: 161, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
24 2 0.01
25 19 0.12
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 114 0.71
31 21 0.13
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:61699017 original size:6 final size:6
Alignment explanation
Indices: 61698807--61698998 Score: 175
Period size: 6 Copynumber: 31.8 Consensus size: 6
61698797 AACCAAAATG
*
61698807 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
61698855 AGTAA-C AGAATT AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* *
61698903 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAAT- AGAATC
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
61698952 AGAATC AGAATC AGTATTC -GTAA-C AGAATC AGAACC AGAATC AGAAT
1 AGAATC AGAATC AG-AATC AG-AATC AGAATC AGAATC AGAATC AGAAT
61698999 TAGGTGACAG
Statistics
Matches: 154, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 14 0.09
6 126 0.82
7 12 0.08
8 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:61699196 original size:27 final size:26
Alignment explanation
Indices: 61699157--61699255 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
61699147 CAGTTATCAA
* *
61699157 ATATTGTGACAGAGTCACCAAATACAG
1 ATATTGTGGCAGAGCCACCAAA-ACAG
* *
61699184 ATATTGTGGCAGAGCCATCAGAACAG
1 ATATTGTGGCAGAGCCACCAAAACAG
* *
61699210 ATATTTGTGGCATAGCCACTAGAAACAG
1 ATA-TTGTGGCAGAGCCACCA-AAACAG
* *
61699238 ATAATGTGGCAAAGCCAC
1 ATATTGTGGCAGAGCCAC
61699256 TTAACAGAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.12
27 45 0.75
28 8 0.13
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (26 bp):
ATATTGTGGCAGAGCCACCAAAACAG
Found at i:61699384 original size:22 final size:23
Alignment explanation
Indices: 61699350--61699411 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
61699340 GCAAATACAT
* *
61699350 TTGGTACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
*
61699372 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
61699394 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
61699412 CAGAAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:61699899 original size:27 final size:27
Alignment explanation
Indices: 61699869--61700106 Score: 282
Period size: 27 Copynumber: 8.8 Consensus size: 27
61699859 GGTATCTCGA
*
61699869 TAATTCCACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTTAG
* **
61699896 TAATTCTACCCTATAGGGGGTATTTCGG
1 TAATTCTACCCTACA-GGGGTATTTTAG
* *
61699924 TAATTTTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTTAG
* **
61699951 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTTAG
* **
61699978 TAATTCTACCCTACAAGGGTA-TTGCG
1 TAATTCTACCCTACAGGGGTATTTTAG
61700004 ATAATTCTACCCTACAGGGGTATTTTAG
1 -TAATTCTACCCTACAGGGGTATTTTAG
* *
61700032 TAATTCTACCCTACAGGGGTATTCTGG
1 TAATTCTACCCTACAGGGGTATTTTAG
* *
61700059 TAATTCTACCCTACAAGGGTA-TTTCG
1 TAATTCTACCCTACAGGGGTATTTTAG
*
61700085 ATAATTCTATCCTACAGGGGTA
1 -TAATTCTACCCTACAGGGGTA
61700107 ATTACCTTAC
Statistics
Matches: 183, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 6 0.03
27 151 0.83
28 26 0.14
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTTAG
Found at i:61699998 original size:54 final size:53
Alignment explanation
Indices: 61699842--61700161 Score: 338
Period size: 54 Copynumber: 6.1 Consensus size: 53
61699832 GGGCAAAATG
* * * * * *
61699842 GTAATTTTACCCCACA-AGGTATCTCGATAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTA-TTTC
* * *
61699895 GTAATTCTACCCTATAGGGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACA-GGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
61699949 AGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTGC
1 -GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
61700003 GATAATTCTACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTCTG
1 G-TAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATT-TC
* *
61700058 GTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACA-GGG------
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
*
61700104 GTAA-T-TACCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
61700155 GGTAATT
1 -GTAATT
61700162 TTGTAAATCG
Statistics
Matches: 227, Mismatches: 24, Indels: 32
0.80 0.08 0.11
Matches are distributed among these distances:
44 33 0.15
45 4 0.02
46 4 0.02
52 4 0.02
53 18 0.08
54 119 0.52
55 45 0.20
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:61700035 original size:81 final size:81
Alignment explanation
Indices: 61699869--61700161 Score: 356
Period size: 81 Copynumber: 3.7 Consensus size: 81
61699859 GGTATCTCGA
* ** * * * *
61699869 TAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGGTATTTCGGTAATTTTACC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-AGGGTATTTCGATAATTCTACC
61699934 CTACAGGGGTATTTCAG
65 CTACAGGGGTATTTCAG
* *
61699951 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTGCGATAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCC
*
61700016 TACAGGGGTATTTTAG
66 TACAGGGGTATTTCAG
*
61700032 TAATTCTACCCTACAGGGGTA-TTCTGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATC
1 TAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
61700096 CTACA-GGG-------G
65 CTACAGGGGTATTTCAG
* * * *
61700105 TAA-T-TACCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATT
61700162 TTGTAAATCG
Statistics
Matches: 192, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
71 45 0.23
72 4 0.02
73 4 0.02
80 6 0.03
81 96 0.50
82 37 0.19
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCC
TACAGGGGTATTTCAG
Found at i:61700125 original size:44 final size:44
Alignment explanation
Indices: 61700065--61700150 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
61700055 CTGGTAATTC
*
61700065 TACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTAAT
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTAAT
* *
61700109 TACCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTA
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTA
61700151 TTTCGGTAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTAAT
Found at i:61700144 original size:27 final size:27
Alignment explanation
Indices: 61700109--61700161 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
61700099 CAGGGGTAAT
*
61700109 TACCTTACAGGGGTATTTCGATAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
*
61700136 TACCCTACAGGGGTATTTCGGTAATT
1 TACCCTACAGGGGTATTTCGATAATT
61700162 TTGTAAATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGATAATTC
Found at i:61700176 original size:27 final size:27
Alignment explanation
Indices: 61700146--61700459 Score: 281
Period size: 27 Copynumber: 11.6 Consensus size: 27
61700136 TACCCTACAG
* ** *
61700146 GGGTATTTCGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
*** ** *
61700173 GGGTAAAATGGTAATTTTGTAAATTAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * **
61700200 GGGTACTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTACAAATCAA
*** * *
61700227 GGGTATTTCAATAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
61700254 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
*
61700281 GGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAATC-AA
* **
61700308 GGGTATTTTGATAATTTTACAAGCCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
61700335 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
61700362 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
** *
61700389 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
*
61700416 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCAA
61700442 GAGGTATTTTGGTAATTT
1 G-GGTATTTTGGTAATTT
61700460 GGTAAACTAA
Statistics
Matches: 242, Mismatches: 42, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
26 4 0.02
27 237 0.98
28 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:61700254 original size:81 final size:81
Alignment explanation
Indices: 61700144--61700459 Score: 312
Period size: 81 Copynumber: 3.9 Consensus size: 81
61700134 TCTACCCTAC
* ** * *** * * *
61700144 AGGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTACTTT
1 AGGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTT
*
61700209 GGTAATTTTAC-AAGT
66 GGTAATTTTACAAACT
* * * * * *
61700224 TGAGGGTATTTCAATAATTTTACAAGTCGAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTT
1 AG-GGGTATTTCGATAATTTTACAAGTCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTT
61700289 TGGTAATTTTACAAACT
65 TGGTAATTTTACAAACT
* * * *
61700306 AGGGGTATTTTGATAATTTTACAAGCCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT
1 AGGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTT
* *
61700371 AGTAATTTTACAAACC
66 GGTAATTTTACAAACT
* * ** ** * * *
61700387 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-CCAGAGGTATTT
1 AGGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTTGGTAATTTTATAAATCAAG-GGTATTT
61700451 TGGTAATTT
65 TGGTAATTT
61700460 GGTAAACTAA
Statistics
Matches: 197, Mismatches: 36, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
80 4 0.02
81 189 0.96
82 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTCGATAATTTTACAAGTCGAGGGTATTTTGGTAATTTTATAAATCAAGGGTATTTT
GGTAATTTTACAAACT
Found at i:61709271 original size:49 final size:47
Alignment explanation
Indices: 61709189--61709297 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
61709179 CTTACTTTGA
61709189 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
61709236 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
61709285 GAATGTGATAAGT
1 GAATGTGA-AAGT
61709298 CCCGAAGGGA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 13 0.22
49 41 0.71
50 4 0.07
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:61711372 original size:43 final size:43
Alignment explanation
Indices: 61711324--61711426 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
61711314 TTGGTTTTCA
61711324 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61711367 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61711410 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
61711427 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:61711443 original size:29 final size:29
Alignment explanation
Indices: 61711408--61711481 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
61711398 GTTGTGAGAT
* *
61711408 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
61711437 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61711466 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61711482 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61712147 original size:40 final size:40
Alignment explanation
Indices: 61711794--61712133 Score: 366
Period size: 40 Copynumber: 8.5 Consensus size: 40
61711784 TCGAATGATG
* * **
61711794 TCCGGGCTAAGTCCAGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTA
* * * * **
61711834 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* *
61711874 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61711914 TCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61711953 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61711993 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
61712033 TTCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
61712073 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61712113 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
61712134 TAATCATGCT
Statistics
Matches: 261, Mismatches: 34, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
39 39 0.15
40 204 0.78
41 18 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:61714846 original size:24 final size:23
Alignment explanation
Indices: 61714813--61714870 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
61714803 AGTTGAAAAG
61714813 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
61714837 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
61714859 TATATATAATAA
1 TATA-ATAATAA
61714871 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:61715222 original size:49 final size:47
Alignment explanation
Indices: 61715140--61715248 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
61715130 CTTACTTTGA
61715140 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
61715187 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
61715236 GAATGTGATAAGT
1 GAATGTGA-AAGT
61715249 CCCGAAGGGC
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 13 0.22
49 41 0.71
50 4 0.07
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:61717319 original size:43 final size:43
Alignment explanation
Indices: 61717271--61717373 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
61717261 TTGGTTTTCA
61717271 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61717314 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
61717357 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
61717374 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:61717390 original size:29 final size:29
Alignment explanation
Indices: 61717355--61717428 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
61717345 GTTGTGAGAT
* *
61717355 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
61717384 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
61717413 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61717429 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:61718036 original size:118 final size:120
Alignment explanation
Indices: 61717815--61718084 Score: 373
Period size: 118 Copynumber: 2.3 Consensus size: 120
61717805 GAGTTACTAA
61717815 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *** * *
61717880 TCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
66 TCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCATTCGTGCTAGTGATAT
* * * *
61717935 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT-CGGGCTAAGT-TCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* * * *
61717998 TCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
66 TCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCATTCGTGCTAGTGATAT
* * *
61718053 ATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
61718085 GGTGACGTGT
Statistics
Matches: 131, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
118 82 0.63
119 10 0.08
120 39 0.30
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATATATCCGGGCTAAACCCCAAAGAGCATTCGTGCTAGTGATAT
Found at i:61718088 original size:40 final size:40
Alignment explanation
Indices: 61717737--61718074 Score: 375
Period size: 40 Copynumber: 8.5 Consensus size: 40
61717727 TCGAATGATG
* **
61717737 TCCGGGCTAAGT-CCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTA
* * * * **
61717776 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* *
61717816 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61717856 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61717896 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61717936 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
61717976 T-CGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
61718014 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
61718054 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
61718075 TAATCATGCT
Statistics
Matches: 262, Mismatches: 31, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
38 26 0.10
39 28 0.11
40 191 0.73
41 17 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:61721153 original size:49 final size:47
Alignment explanation
Indices: 61721071--61721179 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
61721061 CTTACTTTGA
61721071 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
61721118 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
61721167 GAATGTGATAAGT
1 GAATGTGA-AAGT
61721180 CCCGAAGGAA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 13 0.22
49 41 0.71
50 4 0.07
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:61725139 original size:40 final size:40
Alignment explanation
Indices: 61725084--61725230 Score: 267
Period size: 40 Copynumber: 3.7 Consensus size: 40
61725074 CAATTGAGGA
* *
61725084 TTATATCCGGGTTAAGTCTCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
61725124 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
61725164 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
*
61725204 TTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
61725231 ATTGGGTTGG
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
Found at i:61732829 original size:40 final size:40
Alignment explanation
Indices: 61732774--61732880 Score: 178
Period size: 40 Copynumber: 2.7 Consensus size: 40
61732764 CAATTGAGGA
*
61732774 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATTG
*
61732814 TTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCTGATTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATTG
* *
61732854 TTATATCCGGGCTAAATCCCGAAGGCA
1 TTATATCCGGGTTAAGTCCCGAAGGCA
61732881 ATTGGGTTGG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGATTG
Found at i:61734253 original size:43 final size:42
Alignment explanation
Indices: 61734201--61734311 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 42
61734191 TGCCATATTG
* *
61734201 CAGATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCC
1 CAGATATGGTCTTACACGTAATCTCATATCGATGCC-ATAGCC
* *
61734244 CAGCTATGGTCTTACACG-AAGTCTCATATCGATGCCATATCC
1 CAGATATGGTCTTACACGTAA-TCTCATATCGATGCCATAGCC
*
61734286 CAGATATGGTCTTACACGTAGTCTCA
1 CAGATATGGTCTTACACGTAATCTCA
61734312 ATAACCATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 29 0.48
43 31 0.52
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
CAGATATGGTCTTACACGTAATCTCATATCGATGCCATAGCC
Found at i:61734301 original size:42 final size:42
Alignment explanation
Indices: 61734190--61734311 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 42
61734180 TTCCATACCA
** * *
61734190 ATGCCATATTGCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* *
61734232 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
61734275 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA
61734312 ATAACCATAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 36 0.52
43 33 0.48
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:61740016 original size:28 final size:28
Alignment explanation
Indices: 61739965--61740155 Score: 204
Period size: 28 Copynumber: 6.6 Consensus size: 28
61739955 TCGATATTTT
*
61739965 GCACACAAAGTGCCATAC-CAAATGTCTC
1 GCACACTAAGTGCCATACTC-AATGTCTC
* * * *
61739993 GCATACTAAGTGTCATATTTAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
*
61740021 ACACACTAAGTGCCATACTCAATGTCTCGCACTC
1 GCACACTAAGTGCCATACTCAATG--T----CTC
61740055 GCACACTAAGTGCCATACTCAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
* *
61740083 GCACACTAAGTACCATACTTAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
***
61740111 GCACACTAAGTGTTGTACTCAATGTCTC
1 GCACACTAAGTGCCATACTCAATGTCTC
*
61740139 ACACACTAAGTGCCATA
1 GCACACTAAGTGCCATA
61740156 TATAGTCAAA
Statistics
Matches: 134, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
28 106 0.79
30 1 0.01
32 1 0.01
34 26 0.19
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
GCACACTAAGTGCCATACTCAATGTCTC
Found at i:61740065 original size:34 final size:34
Alignment explanation
Indices: 61740022--61740086 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
61740012 TAATGTCTCA
61740022 CACACTAAGTGCCATACTCAATGTCTCGCACTCG
1 CACACTAAGTGCCATACTCAATGTCTCGCACTCG
61740056 CACACTAAGTGCCATACTCAATGTCTCGCAC
1 CACACTAAGTGCCATACTCAATGTCTCGCAC
61740087 ACTAAGTACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.23
Consensus pattern (34 bp):
CACACTAAGTGCCATACTCAATGTCTCGCACTCG
Found at i:61740118 original size:90 final size:90
Alignment explanation
Indices: 61739965--61740138 Score: 251
Period size: 90 Copynumber: 1.9 Consensus size: 90
61739955 TCGATATTTT
* ** *
61739965 GCACACAAAGTGCCATACCAAATGTCTCGCATACTAAGTGTCATATTTAATGTCTCACACACTAA
1 GCACACAAAGTGCCATACCAAATGTCTCGCACACTAAGTACCATACTTAATGTCTCACACACTAA
61740030 GTGCCATACTCAATGTCTCGCACTC
66 GTGCCATACTCAATGTCTCGCACTC
* *
61740055 GCACACTAAGTGCCATACTC-AATGTCTCGCACACTAAGTACCATACTTAATGTCTCGCACACTA
1 GCACACAAAGTGCCATAC-CAAATGTCTCGCACACTAAGTACCATACTTAATGTCTCACACACTA
***
61740119 AGTGTTGTACTCAATGTCTC
65 AGTGCCATACTCAATGTCTC
61740139 ACACACTAAG
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 73 0.99
91 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.28
Consensus pattern (90 bp):
GCACACAAAGTGCCATACCAAATGTCTCGCACACTAAGTACCATACTTAATGTCTCACACACTAA
GTGCCATACTCAATGTCTCGCACTC
Found at i:61741745 original size:28 final size:28
Alignment explanation
Indices: 61741705--61741770 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
61741695 TGGGAAGTAG
* *
61741705 TTGGGCCTGATGGGCCATTTGAAT-ATGA
1 TTGGGCCTAATGGGCCATGTGAATGA-GA
61741733 TTGGGCCTAATGGGCCATGTGAATGAGA
1 TTGGGCCTAATGGGCCATGTGAATGAGA
61741761 TTGGGCCTAA
1 TTGGGCCTAA
61741771 AGGGGCCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.29
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATGTGAATGAGA
Found at i:61742115 original size:27 final size:27
Alignment explanation
Indices: 61742085--61742425 Score: 330
Period size: 27 Copynumber: 12.7 Consensus size: 27
61742075 TAATAAAGAG
* * *
61742085 AAATTATCGAAGTACCCCCGGTTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
** *
61742112 AAATTATAAAAATACCATCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
61742139 AAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * * * *
61742166 GAATTATTGAAATACCCT-TAATTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
* *
61742192 AAATTA-CTGAAATACCCTCAATTTCTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
61742219 AAATTA-CTAGAATACCCTCAACTTGTA
1 AAATTATCGA-AATACCCTCGATTTGTA
* *
61742246 AAATTATCGAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * * *
61742273 AAATTACCTAAACACCCTCGATTTTTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
61742300 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
61742327 AAATTATCAAAATACCTTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
61742354 AAATTATCGAAATACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
61742381 AAATTATCGAAACAACCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
61742408 AAATTATCTAAATACCCT
1 AAATTATCGAAATACCCT
61742426 TGCAGTGTAA
Statistics
Matches: 260, Mismatches: 48, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
26 21 0.08
27 237 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:61742434 original size:27 final size:27
Alignment explanation
Indices: 61742085--61742478 Score: 323
Period size: 27 Copynumber: 14.6 Consensus size: 27
61742075 TAATAAAGAG
* ** *
61742085 AAATTATCGAAGTACCCCCGGTTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
** * *
61742112 AAATTATAAAAATACCATCGATTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
*
61742139 AAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTTGATTTGTA
* * * *
61742166 GAATTATTGAAATACCCTT-AATTGTG
1 AAATTATCGAAATACCCTTGATTTGTA
** *
61742192 AAATTA-CTGAAATACCCTCAATTTCTA
1 AAATTATC-GAAATACCCTTGATTTGTA
* ** *
61742219 AAATTA-CTAGAATACCCTCAACTTGTA
1 AAATTATCGA-AATACCCTTGATTTGTA
*
61742246 AAATTATCGAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
* * * * *
61742273 AAATTACCTAAACACCCTCGATTTTTA
1 AAATTATCGAAATACCCTTGATTTGTA
* *
61742300 AAATTACCGAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
* *
61742327 AAATTATCAAAATACCTTTGATTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
61742354 AAATTATCGAAATACCCTTGATTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
* * **
61742381 AAATTATCGAAACAACCTCAATTTGTA
1 AAATTATCGAAATACCCTTGATTTGTA
* *
61742408 AAATTATCTAAATACCCTTGCA-GTGTA
1 AAATTATCGAAATACCCTTG-ATTTGTA
* * * *
61742435 AAGTTACCAAAATACCCTT-ATAGTGTA
1 AAATTATCGAAATACCCTTGAT-TTGTA
* *
61742462 AAATGATCGACATACCC
1 AAATTATCGAAATACCC
61742479 CTGTAGGGTA
Statistics
Matches: 299, Mismatches: 59, Indels: 18
0.80 0.16 0.05
Matches are distributed among these distances:
25 1 0.00
26 21 0.07
27 274 0.92
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTTGATTTGTA
Found at i:61745208 original size:47 final size:47
Alignment explanation
Indices: 61745111--61745787 Score: 1039
Period size: 47 Copynumber: 14.3 Consensus size: 47
61745101 TACTTGATAG
* *
61745111 TATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTGTA
* *
61745160 TATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
61745209 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
61745258 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
61745305 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
61745352 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
61745399 TATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
61745446 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
61745493 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGGAAGCGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
61745540 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
61745587 TATATGTGATAAGGCCGAATGGCCCATGTGATGAATGTGGAAGCGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
61745634 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
61745681 TATAAGTGATATGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
61745728 AATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
61745775 TAAATGTGATAAG
1 TATATGTGATAAG
61745788 TCCCGAAGGG
Statistics
Matches: 585, Mismatches: 41, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
47 454 0.78
49 131 0.22
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:61745477 original size:22 final size:22
Alignment explanation
Indices: 61745449--61745571 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
61745439 AAGTGTATAT
61745449 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
61745471 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
*
61745495 TATGTGATAAGGCCGAATGGCCG
1 -ATGTGATAAGGCCGAATGGCCA
* ** **
61745518 ATGTGATGAATGTGGAA-GCGTATA
1 ATGTGAT-AAGGCCGAATG-G-CCA
61745542 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
61745565 ATGTGAT
1 ATGTGAT
61745572 GAATGTGAAA
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 23 0.33
23 15 0.22
24 15 0.22
25 16 0.23
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:61758449 original size:79 final size:82
Alignment explanation
Indices: 61758338--61758522 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
61758328 GCTACTCGTT
* *
61758338 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
61758401 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
61758418 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
61758481 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
61758498 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61758523 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:61758522 original size:40 final size:40
Alignment explanation
Indices: 61758319--61758522 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
61758309 CGGAATTTAA
** *
61758319 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61758359 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
61758399 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61758438 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
61758478 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
61758518 CCGGA
1 CCGGA
61758523 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:61763646 original size:24 final size:24
Alignment explanation
Indices: 61763617--61763664 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
61763607 CAACGGACAG
61763617 TTCTTGTACACTTTATCAACCAAC
1 TTCTTGTACACTTTATCAACCAAC
61763641 TTCTTGTACACTTTATCAACCAAC
1 TTCTTGTACACTTTATCAACCAAC
61763665 ACACACTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.04, T:0.38
Consensus pattern (24 bp):
TTCTTGTACACTTTATCAACCAAC
Found at i:61768298 original size:19 final size:18
Alignment explanation
Indices: 61768261--61768304 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
61768251 ATACATACAG
61768261 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
61768278 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
61768297 TACTAATT
1 TAATAATT
61768305 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:61770556 original size:28 final size:28
Alignment explanation
Indices: 61770402--61770555 Score: 227
Period size: 28 Copynumber: 5.5 Consensus size: 28
61770392 ACTCGATATT
* * *
61770402 TCGCACACTAAGTGTCATATTCAATATC
1 TCGCACACTAAGTGCCATACTCAATGTC
61770430 TCGCACACTAAGTGCCATACTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
61770458 TCGCACACTAAGTGCCATACTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
* *
61770486 TCGTACACTAAGTGCCATTCTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
* ***
61770514 TCACACACTAAGTGTTGTACTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
61770542 TCGCACACTAAGTG
1 TCGCACACTAAGTG
61770556 TCGTATATAC
Statistics
Matches: 114, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 114 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATACTCAATGTC
Found at i:61774688 original size:42 final size:41
Alignment explanation
Indices: 61774642--61774795 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 41
61774632 TGATTTCGTA
*
61774642 TAAGACCATGTCTGGGACATGGCATCGATATGAGGTTCTGTG
1 TAAGACCATGTCTGGGACATGGCATCGATATGAGGTTC-ATG
* * *
61774684 TAAGACCATGTCTGGGACATGGCGTCGGCACTGATTTGAGACTTCATA
1 TAAGACCATGTCTGGGACATGGCATC-G-A-T-A--TGAG-GTTCATG
* * * * *
61774732 TAAGACCATATCTGGGATATGGCATCGATGTGTGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATCGATATGAGGT-TCATG
*
61774774 TAAGTCCATGTCTGGGACATGG
1 TAAGACCATGTCTGGGACATGG
61774796 ATTTGGCACC
Statistics
Matches: 89, Mismatches: 15, Indels: 16
0.74 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 50 0.56
43 1 0.01
44 1 0.01
45 2 0.02
46 2 0.02
47 1 0.01
48 28 0.31
49 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (41 bp):
TAAGACCATGTCTGGGACATGGCATCGATATGAGGTTCATG
Found at i:61794080 original size:79 final size:79
Alignment explanation
Indices: 61793969--61794192 Score: 292
Period size: 79 Copynumber: 2.8 Consensus size: 79
61793959 GCTACTCGTT
* * *
61793969 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
61794034 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
61794049 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
61794112 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * * *
61794127 CAAATGCCTTCAGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGGCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
61794191 GA
64 GA
61794193 CATCATTCAA
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 34 0.27
79 60 0.47
80 34 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:61794083 original size:39 final size:40
Alignment explanation
Indices: 61793969--61794192 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
61793959 GCTACTCGTT
* *
61793969 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
61794009 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
61794049 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
61794088 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * * *
61794127 CAAATGCCTTC-AGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
61794168 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
61794193 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 74 0.45
40 77 0.47
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:61801062 original size:39 final size:40
Alignment explanation
Indices: 61800905--61801129 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
61800895 GCTCCTCGTT
* *
61800905 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
61800945 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
61800985 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
61801025 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
61801064 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
61801105 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
61801130 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:61801089 original size:119 final size:120
Alignment explanation
Indices: 61800907--61801129 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
61800897 TCCTCGTTCA
* *
61800907 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
*
61800972 TTAGTAACTCA-CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTCAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
61801027 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATACCTTCGGGA-CTTAACCCGG
* * * *
61801089 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTCAGCACAAAGCCTTCGGGACTTAACCCGGA
61801130 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.75
120 18 0.20
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTCAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:61804859 original size:40 final size:39
Alignment explanation
Indices: 61804815--61804965 Score: 187
Period size: 40 Copynumber: 3.7 Consensus size: 39
61804805 CACTAGCTCA
* * * *
61804815 AAGCCTGCGGAACTTTAAGCCTGG-ATATAGTACCAGCACT
1 AAGCCTGCGGGA-TTTAA-CCCGGAATATATTACCAGCACG
61804855 AAGCCTGCGGGATTTAACCCGGATATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGG--A-ATATATTACCAGCACG
*
61804897 AAACCTGCGGGATTTAACCCGGATATATATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGA-ATATATTACCAGCACG
61804937 AAGCCTGCGGGATTTAACCCGGATATATA
1 AAGCCTGCGGGATTTAACCCGGA-ATATA
61804966 ATATATCGAG
Statistics
Matches: 101, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
38 4 0.04
39 5 0.05
40 57 0.56
42 35 0.35
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (39 bp):
AAGCCTGCGGGATTTAACCCGGAATATATTACCAGCACG
Found at i:61804904 original size:42 final size:42
Alignment explanation
Indices: 61804839--61804965 Score: 213
Period size: 42 Copynumber: 3.1 Consensus size: 42
61804829 TTAAGCCTGG
* *
61804839 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
*
61804881 ATATATTACCAGCACGAAACCTGCGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
61804921 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
61804963 ATA
1 ATA
61804966 ATATATCGAG
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
40 39 0.49
42 40 0.51
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
Found at i:61806292 original size:6 final size:6
Alignment explanation
Indices: 61806281--61806307 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
61806271 CACAAGATGA
61806281 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
61806308 TGTTCATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:61817068 original size:13 final size:13
Alignment explanation
Indices: 61817050--61817078 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
61817040 TTTAGTTTAA
61817050 TTAGTTAATTAGT
1 TTAGTTAATTAGT
61817063 TTAGTTAATTAGT
1 TTAGTTAATTAGT
61817076 TTA
1 TTA
61817079 ATAAGCAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:61822549 original size:6 final size:6
Alignment explanation
Indices: 61822540--61822578 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
61822530 TCTTTTATTT
* *
61822540 TTTTTA TTTTTA TTTTTA TTTTAA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
61822579 CAATTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:61822566 original size:18 final size:18
Alignment explanation
Indices: 61822532--61822585 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
61822522 TTGAATCCTC
61822532 TTTTA-TTTT-TTTT-AT
1 TTTTATTTTTATTTTAAT
61822547 TTTTATTTTTATTTTAAT
1 TTTTATTTTTATTTTAAT
* *
61822565 TTTTATTTTCATTTCAAT
1 TTTTATTTTTATTTTAAT
61822583 TTT
1 TTT
61822586 ATTAGTTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 5 0.15
16 4 0.12
17 4 0.12
18 21 0.62
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTTTTATTTTAAT
Found at i:61824450 original size:40 final size:40
Alignment explanation
Indices: 61824235--61824452 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
61824225 AAACCAAGTA
* *
61824235 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
61824274 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
61824314 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61824354 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
61824394 CCTTCGGGACTTAGCCC-GAAATTATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
61824434 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61824453 TTACCATCCG
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:61827994 original size:27 final size:27
Alignment explanation
Indices: 61827964--61828070 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 27
61827954 GGCTACTAGA
* **
61827964 ACAGATAATGTGACAGAGTTACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
61827991 ACAGATAATCGTGGCAGACCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
61828018 ATAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
* *
61828046 -CAGATAATTATGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
61828071 GACGCTTACT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 1 0.01
27 51 0.76
28 15 0.22
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:61828060 original size:54 final size:54
Alignment explanation
Indices: 61827961--61828070 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
61827951 CATGGCTACT
** *
61827961 AGAACAGATAATGTGACAGAGTTACCAGATACAGATAATCGTGGCAGACCCACC
1 AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGACCCACC
* * * * *
61828015 AGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTATGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCATGGCAGACCCACC
61828069 AG
1 AG
61828071 GACGCTTACT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 30 0.64
55 17 0.36
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCATGGCAGACCCACC
Found at i:61831669 original size:13 final size:13
Alignment explanation
Indices: 61831651--61831679 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
61831641 TTTAGTTTAA
61831651 TTAGTTAATTAGT
1 TTAGTTAATTAGT
61831664 TTAGTTAATTAGT
1 TTAGTTAATTAGT
61831677 TTA
1 TTA
61831680 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:61853608 original size:79 final size:81
Alignment explanation
Indices: 61853474--61853656 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
61853464 TGAATGATGT
* *
61853474 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTG
*
61853538 TGCGAGATACTA-ATTC
66 TGCGAGATACTATA-AC
* * * **
61853554 CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATT
*
61853616 GTGCGAGTTACTATAAC
65 GTGCGAGATACTATAAC
*
61853633 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
61853657 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTG
TGCGAGATACTATAAC
Found at i:61853670 original size:40 final size:40
Alignment explanation
Indices: 61853474--61853656 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
61853464 TGAATGATGT
* * * *
61853474 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAC
* * *
61853514 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-AC
61853554 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
* *
61853593 CGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
*
61853633 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
61853657 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
Found at i:61853678 original size:79 final size:79
Alignment explanation
Indices: 61853525--61853689 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
61853515 GGACTAAGAT
* * **
61853525 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
61853590 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
61853604 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
61853667 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
61853683 CCGAAGG
1 CCGAAGG
61853690 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:61861457 original size:40 final size:40
Alignment explanation
Indices: 61861413--61861595 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
61861403 TTGAATGATG
* * *
61861413 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
61861453 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
61861492 TTCGGGCTAAG-CCCGAAGGCATTTGTG-GAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
61861530 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
61861570 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61861596 AACGAGAGCT
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
37 8 0.07
38 25 0.21
39 25 0.21
40 55 0.45
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:61870387 original size:46 final size:46
Alignment explanation
Indices: 61870337--61870512 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
61870327 TGGTTGAGCA
61870337 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
61870383 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
61870428 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
61870476 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61870513 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.59
47 28 0.26
48 3 0.03
50 3 0.03
51 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61870493 original size:93 final size:93
Alignment explanation
Indices: 61870334--61870505 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
61870324 GGATGGTTGA
* *
61870334 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61870399 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
61870427 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61870492 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61870506 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:61881382 original size:25 final size:25
Alignment explanation
Indices: 61881260--61881382 Score: 86
Period size: 25 Copynumber: 5.2 Consensus size: 25
61881250 GAGATGAATG
61881260 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
* * *
61881285 CG-A-ATGGC-CA-ATGTGATGAATG-
1 TGAACAT-GCATATATGTGAT-AAGGC
61881307 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
* * *
61881332 CG-A-ATGGC-CA-ATGTGATGAATG-
1 TGAACAT-GCATATATGTGAT-AAGGC
61881354 TGAACATGCATATATGTGATAAGGC
1 TGAACATGCATATATGTGATAAGGC
61881379 TGAA
1 TGAA
61881383 TGGCCAATGT
Statistics
Matches: 72, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 16 0.22
23 18 0.25
24 18 0.25
25 20 0.28
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (25 bp):
TGAACATGCATATATGTGATAAGGC
Found at i:61881395 original size:22 final size:22
Alignment explanation
Indices: 61881273--61881395 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
61881263 ACATGCATAT
*
61881273 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCTGAATGGCCA
* *
61881295 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCTG-A-ATGGC-CA
*
61881319 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
* *
61881342 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCTG-A-ATGGC-CA
61881366 TATGTGATAAGGCTGAATGGCCA
1 -ATGTGATAAGGCTGAATGGCCA
61881389 ATGTGAT
1 ATGTGAT
61881396 GAACGTGGAA
Statistics
Matches: 76, Mismatches: 11, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
22 23 0.30
23 18 0.24
24 18 0.24
25 17 0.22
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCTGAATGGCCA
Found at i:61881418 original size:47 final size:47
Alignment explanation
Indices: 61881252--61881398 Score: 285
Period size: 47 Copynumber: 3.1 Consensus size: 47
61881242 GATTTTATGA
61881252 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
61881299 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
61881346 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
61881393 GATGAA
1 GATGAA
61881399 CGTGGAAGTG
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:61881428 original size:94 final size:94
Alignment explanation
Indices: 61881252--61881438 Score: 270
Period size: 94 Copynumber: 2.0 Consensus size: 94
61881242 GATTTTATGA
*
61881252 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
* *
61881317 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGAGAAGGCCGAAAGGCCAATGT
* * *
61881346 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGTGATGAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGT-GAACATGC
* *
61881410 ATATATGTGGCGAA-GCCGAAAGGCTAATG
65 ATATATGT-GAGAAGGCCGAAAGGCCAATG
61881439 CGAAATGTGT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
94 77 0.93
95 6 0.07
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
TATATGTGAGAAGGCCGAAAGGCCAATGT
Found at i:61881481 original size:46 final size:46
Alignment explanation
Indices: 61881422--61881548 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 46
61881412 ATATGTGGCG
* *
61881422 AAGCCGAAAGGCTAATGCGAAATGTGTACGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * *
61881468 AAGCCGAATGGCTAATTCGAAACGTGTATGAGATGGATATGTGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * * * *
61881514 AATCCAAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
61881549 TGTATATATA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
Found at i:61883090 original size:40 final size:40
Alignment explanation
Indices: 61883035--61883173 Score: 251
Period size: 40 Copynumber: 3.5 Consensus size: 40
61883025 TGAGAGTTAT
*
61883035 ATATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
61883075 ATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
61883115 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
61883155 ATATATCCGGGCTAAGTCC
1 ATATATCCGGGCTAAGTCC
61883174 TGATATATTC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:61883179 original size:21 final size:21
Alignment explanation
Indices: 61883153--61883194 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
61883143 TTCGTGCTGG
61883153 TGATATATCCGGGCTAAGTCC
1 TGATATATCCGGGCTAAGTCC
*
61883174 TGATATATTCGGGCTAAGTCC
1 TGATATATCCGGGCTAAGTCC
61883195 CGAAGAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (21 bp):
TGATATATCCGGGCTAAGTCC
Found at i:61883208 original size:61 final size:61
Alignment explanation
Indices: 61883113--61883237 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 61
61883103 TTCGTGCTAG
* *
61883113 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCC
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCC
*
61883174 TGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCC
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCC
61883235 TGA
1 TGA
61883238 AGAGCATTCG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (61 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCC
Found at i:61883218 original size:40 final size:40
Alignment explanation
Indices: 61883174--61883412 Score: 374
Period size: 40 Copynumber: 6.0 Consensus size: 40
61883164 GGCTAAGTCC
* *
61883174 TGATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* *
61883214 TGATATATCCAGGCTAAGTCCTGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* *
61883254 TGATATATTCGGGCTAAGTCCCGAAGAGCATTCATGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
61883294 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* *
61883334 TGATATATTCGGGTTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
61883374 TGATATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
61883413 AATTATAAGG
Statistics
Matches: 183, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 15 0.08
40 168 0.92
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:61883248 original size:101 final size:101
Alignment explanation
Indices: 61883073--61883274 Score: 361
Period size: 101 Copynumber: 2.0 Consensus size: 101
61883063 TTCGTGCTAG
*
61883073 TGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAA
1 TGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAA
61883138 GAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCC
66 GAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCC
*
61883174 TGATATAT-TCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCTGA
1 TGATATATCT-GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGA
*
61883238 AGAGCATTCGTGCTGGTGATATATTCGGGCTAAGTCC
65 AGAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCC
61883275 CGAAGAGCAT
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
100 1 0.01
101 96 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (101 bp):
TGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAA
GAGCATTCGTGCTGGTGATATATCCGGGCTAAGTCC
Found at i:61883292 original size:141 final size:141
Alignment explanation
Indices: 61883035--61883314 Score: 488
Period size: 141 Copynumber: 2.0 Consensus size: 141
61883025 TGAGAGTTAT
* **
61883035 ATATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTAGTGATATATCTGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGA
*
61883100 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATATCCGG
66 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATATCCGG
61883165 GCTAAGTCCTG
131 GCTAAGTCCTG
* *
61883176 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCTGAAGA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGA
* *
61883241 GCATTCGTGCTGGTGATATATTCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATATCCGG
66 GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATATCCGG
61883306 GCTAAGTCC
131 GCTAAGTCC
61883315 CGAAGAGCAT
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 131 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (141 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGA
GCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGATATATCCGG
GCTAAGTCCTG
Found at i:61887175 original size:22 final size:22
Alignment explanation
Indices: 61887147--61887269 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
61887137 ACATGCGTAT
61887147 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
61887169 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
61887193 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
61887216 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
61887240 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
61887263 ATGTGAT
1 ATGTGAT
61887270 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 23 0.31
23 18 0.24
24 18 0.24
25 16 0.21
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:61887302 original size:94 final size:94
Alignment explanation
Indices: 61887126--61887312 Score: 279
Period size: 94 Copynumber: 2.0 Consensus size: 94
61887116 GATTTTATAA
* *
61887126 GATGAATGTGAACATGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
*
61887191 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGAGAAGGCCGAATGGCCAATGT
* *
61887220 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGT-GAACATGC
* *
61887284 ATATATGTGGCGAA-GCCGAATGGCGAATG
65 ATATATGT-GAGAAGGCCGAATGGCCAATG
61887313 CGAAATGTGT
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
94 78 0.93
95 6 0.07
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAACATGCA
TATATGTGAGAAGGCCGAATGGCCAATGT
Found at i:61887307 original size:47 final size:47
Alignment explanation
Indices: 61887126--61887272 Score: 285
Period size: 47 Copynumber: 3.1 Consensus size: 47
61887116 GATTTTATAA
*
61887126 GATGAATGTGAACATGCGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
61887173 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
61887220 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
61887267 GATGAA
1 GATGAA
61887273 CGTGGAAGTG
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:61887346 original size:46 final size:46
Alignment explanation
Indices: 61887296--61887422 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 46
61887286 ATATGTGGCG
* *
61887296 AAGCCGAATGGCGAATGCGAAATGTGTACGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* *
61887342 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * * *
61887388 AAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
61887423 TGTATATATA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.35, C:0.10, G:0.32, T:0.23
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
Found at i:61889715 original size:53 final size:53
Alignment explanation
Indices: 61889537--61889743 Score: 182
Period size: 53 Copynumber: 3.8 Consensus size: 53
61889527 ATTAGGGTTT
* * * *
61889537 AAGGACACCATGTAAGAACATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGACACCATGTAAGAACATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
61889591 AAGGAAATCATGTAAGAACATGTCAAGACATGGCACTGATAAACTACGATAAGGC
1 AAGGACACCATGTAAGAACATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
** * * * *
61889646 AAAAATC-CCATATAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGA-CACCATGTAAGAACATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * * *
61889699 AAGGACACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGACACCATGTAAGAACATGCCAAGACATGGCAATGGTAAGTT
61889744 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 31, Indels: 9
0.75 0.20 0.06
Matches are distributed among these distances:
52 1 0.01
53 42 0.36
54 38 0.32
55 37 0.31
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (53 bp):
AAGGACACCATGTAAGAACATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:61903279 original size:40 final size:40
Alignment explanation
Indices: 61903242--61903425 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
61903232 GCTACTCGTT
*
61903242 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
61903282 CAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
61903322 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
61903361 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
61903402 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
61903426 ACATCATTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 74 0.62
41 14 0.12
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:61903353 original size:79 final size:81
Alignment explanation
Indices: 61903244--61903426 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
61903234 TACTCGTTCA
* * *
61903244 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
61903307 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
61903324 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
61903387 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
61903403 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
61903427 CATCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:61908104 original size:14 final size:15
Alignment explanation
Indices: 61908085--61908114 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61908075 GTCTATTATA
61908085 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
61908099 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
61908114 T
1 T
61908115 CTCAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:61910081 original size:43 final size:43
Alignment explanation
Indices: 61909990--61910131 Score: 169
Period size: 43 Copynumber: 3.3 Consensus size: 43
61909980 TTCGGGCCTT
* * * * *
61909990 GGCCTAGCAAGCTTTAA-GCCGGTGAATAATATTATTGGGCTTCG
1 GGCCTAGCAGGCTATAATGCCGGT-AA-AATAATATCGGGCTTCA
* *
61910034 GGCCTAGCAGGCTATAATGCCGGTAAGATAATATCGGGCTTTA
1 GGCCTAGCAGGCTATAATGCCGGTAAAATAATATCGGGCTTCA
* *
61910077 GGCCTAGCAGGCTATAATGCCGATAAAATGATATCGGGCTTCA
1 GGCCTAGCAGGCTATAATGCCGGTAAAATAATATCGGGCTTCA
*
61910120 AGCCTAGCAGGC
1 GGCCTAGCAGGC
61910132 GAAATACCGG
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
43 62 0.73
44 17 0.20
45 6 0.07
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (43 bp):
GGCCTAGCAGGCTATAATGCCGGTAAAATAATATCGGGCTTCA
Found at i:61914581 original size:14 final size:15
Alignment explanation
Indices: 61914562--61914591 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61914552 GTTTATTATA
61914562 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
61914576 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
61914591 T
1 T
61914592 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:61917326 original size:59 final size:59
Alignment explanation
Indices: 61917199--61917338 Score: 162
Period size: 59 Copynumber: 2.4 Consensus size: 59
61917189 TTTAGTGTTA
*
61917199 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAG-ATCAGAGTAT
* *
61917260 ACT-GGCCTAGCCCATATCAGTATCAATCTGGGCCGTAG-CCCTATACA-AGTC-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCT-TACAGA-TCAGAG-TAT
* *
61917318 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
61917339 CACAGTTGGG
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
57 4 0.06
58 11 0.16
59 47 0.68
60 4 0.06
61 3 0.04
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGATCAGAGTAT
Found at i:61918552 original size:15 final size:15
Alignment explanation
Indices: 61918532--61918561 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
61918522 TTAGTATAAT
61918532 GAAAAAGAGAAAATA
1 GAAAAAGAGAAAATA
*
61918547 GAAAAATAGAAAATA
1 GAAAAAGAGAAAATA
61918562 AGAGATGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (15 bp):
GAAAAAGAGAAAATA
Found at i:61920088 original size:43 final size:43
Alignment explanation
Indices: 61919987--61920151 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
61919977 AATGTGATAT
* * ** *
61919987 TCAGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTG-A-AATAATA
61920030 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGT-AAGATAATA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAA-ATAATA
* * *
61920073 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCAGTGAAATGATA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAAATAATA
** * * *
61920116 TCAGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAA
61920152 TGAGTTCAGA
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
42 12 0.11
43 71 0.68
44 18 0.17
45 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (43 bp):
TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAAATAATA
Found at i:61920174 original size:41 final size:43
Alignment explanation
Indices: 61920086--61920178 Score: 111
Period size: 41 Copynumber: 2.2 Consensus size: 43
61920076 GGCTTCGGGC
* * * *
61920086 CTAGCAGGCTATAATGCCAGTGAAATGATATCAGGCTTCAAGC
1 CTAGCAGGCGATAATGCCAGTGAAATGATATCAGACTTAAAGA
*
61920129 CTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCAGACTTAAAGA
1 CTAGCAGGCGATAATGCCAGTGAAATGA-TATCAGACTTAAAGA
61920170 CTAGCAGGC
1 CTAGCAGGC
61920179 TTCGTGCCGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
41 24 0.55
42 10 0.23
43 10 0.23
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (43 bp):
CTAGCAGGCGATAATGCCAGTGAAATGATATCAGACTTAAAGA
Found at i:61923086 original size:26 final size:26
Alignment explanation
Indices: 61922983--61923152 Score: 110
Period size: 27 Copynumber: 6.4 Consensus size: 26
61922973 GGGCATAATC
* * *
61922983 GTCATATTACCATATAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTTCG
* * **
61923010 GTCATTTTGCTCTATAAGGGTATTTTA
1 GTCATTTTAC-CTACAAGGGTATTTCG
*
61923037 GTAATTTTACACTACAAGGGTATTTCG
1 GTCATTTTAC-CTACAAGGGTATTTCG
* *
61923064 GTCATTTTACCCACAAGGGTATTACG
1 GTCATTTTACCTACAAGGGTATTTCG
* ** *
61923090 ATCA-TTTACAGACCAAGGGTATTTCA
1 GTCATTTTACCTA-CAAGGGTATTTCG
* * **
61923116 GTAATTTTGCAAATCAAGGGTATTTCG
1 GTCATTTTACCTA-CAAGGGTATTTCG
61923143 G-CAATTTTAC
1 GTC-ATTTTAC
61923153 AAATTGAGAG
Statistics
Matches: 112, Mismatches: 27, Indels: 8
0.76 0.18 0.05
Matches are distributed among these distances:
25 6 0.05
26 30 0.27
27 75 0.67
28 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTTCG
Found at i:61923165 original size:27 final size:27
Alignment explanation
Indices: 61923094--61923167 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
61923084 ATTACGATCA
* * * *
61923094 TTTACAGACCAAGGGTATTTCAGTAAT
1 TTTACAAATCAAGAGTATTTCAGCAAT
* * *
61923121 TTTGCAAATCAAGGGTATTTCGGCAAT
1 TTTACAAATCAAGAGTATTTCAGCAAT
**
61923148 TTTACAAATTGAGAGTATTT
1 TTTACAAATCAAGAGTATTT
61923168 ATGACGCATC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.36
Consensus pattern (27 bp):
TTTACAAATCAAGAGTATTTCAGCAAT
Found at i:61955933 original size:35 final size:35
Alignment explanation
Indices: 61955887--61955990 Score: 163
Period size: 35 Copynumber: 3.0 Consensus size: 35
61955877 TTACAGTGTT
61955887 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
*
61955922 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAAC
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
* * * *
61955957 AACTGGTATGTTGGATGGTACTGACTCTTATGAG
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAG
61955991 TATCTGGTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.20, C:0.13, G:0.32, T:0.35
Consensus pattern (35 bp):
AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
Found at i:61955998 original size:35 final size:35
Alignment explanation
Indices: 61955898--61956010 Score: 140
Period size: 35 Copynumber: 3.2 Consensus size: 35
61955888 ATTGGTGTGC
* *
61955898 TGGATGGTACTGGCTCTTATGAGCAAT-TGGTGTGC
1 TGGATGGTACTGGCTCTTATGAG-AATCTGGTATGT
*
61955933 TGGATGGTACTGGCTCTTATGA-ACAACTGGTATGT
1 TGGATGGTACTGGCTCTTATGAGA-ATCTGGTATGT
* *
61955968 TGGATGGTACTGACTCTTATGAGTATCTGGTATGT
1 TGGATGGTACTGGCTCTTATGAGAATCTGGTATGT
*
61956003 TGAATGGT
1 TGGATGGT
61956011 TAACCGAGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 66 0.97
ACGTcount: A:0.20, C:0.12, G:0.31, T:0.36
Consensus pattern (35 bp):
TGGATGGTACTGGCTCTTATGAGAATCTGGTATGT
Done.