Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 193 of 290
Found at i:61969625 original size:365 final size:365
Alignment explanation
Indices: 61968955--61969690 Score: 1339
Period size: 365 Copynumber: 2.0 Consensus size: 365
61968945 CCTTCAACAA
* *
61968955 GTGAAATACAAGCCATATTTATAGCCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
1 GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
* *
61969020 GGGACGGCTATCTTAAGCCTTAAGGCTTTAGGAAATTTCCTAGAAATTTCTTGAACATATTCTAG
66 GGGACGGCTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTAGAAATTTCTTAAACATATTCTAG
*
61969085 AGTCTTCTTGGCTTGGGAAACTAAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
131 AGTCTTCTTGGCTTGGGAAACCAAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
*
61969150 TGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGTTTGAAAGTAGTTTGAATGCTTCTTA
196 TGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTTA
61969215 AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCTAATGGC
261 AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCTAATGGC
61969280 CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
326 CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
*
61969320 GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCTGAATAGTCATATGGGCATTCAAG
1 GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
61969385 GGGACGGCTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTA-ACAATTTCTTAAACATATTCTA
66 GGGACGGCTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTAGA-AATTTCTTAAACATATTCTA
*
61969449 GAGTCTTCTTGGCTTGGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTA
130 GAGTCTTCTTGGCTTGGGAAACCAAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTA
* *
61969514 ATGGGAAGCTTTATGGACTAGTCCACATTCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTT
195 ATGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTT
*
61969579 AAATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGACTCTAATGG
260 AAATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCTAATGG
* *
61969644 CCATTCAAGTGTGAAAGGCCGAATATGTATAGTCTTTGTGT
325 CCATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
61969685 GTGAAA
1 GTGAAA
61969691 ACATGGAACC
Statistics
Matches: 357, Mismatches: 13, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
364 1 0.00
365 356 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (365 bp):
GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
GGGACGGCTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTAGAAATTTCTTAAACATATTCTAG
AGTCTTCTTGGCTTGGGAAACCAAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
TGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTTA
AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCTAATGGC
CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
Found at i:61979346 original size:14 final size:15
Alignment explanation
Indices: 61979327--61979356 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61979317 GTTTATTATA
61979327 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
61979341 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
61979356 T
1 T
61979357 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:61982042 original size:60 final size:59
Alignment explanation
Indices: 61981965--61982105 Score: 171
Period size: 60 Copynumber: 2.4 Consensus size: 59
61981955 TTTAGTGTTA
*
61981965 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCT-TAC-AGTATC-AGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAG-CCCTATACAAG--TCGAGA-TAT
* *
61982026 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATACAAGTCGAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
* *
61982085 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
61982106 CACAGTTGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
59 27 0.38
60 34 0.48
61 10 0.14
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATACAAGTCGAGATAT
Found at i:61983319 original size:15 final size:15
Alignment explanation
Indices: 61983299--61983328 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
61983289 TTAGTATAAT
61983299 GAAAAAGAGAAAATA
1 GAAAAAGAGAAAATA
*
61983314 GAAAAATAGAAAATA
1 GAAAAAGAGAAAATA
61983329 AGAGATGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (15 bp):
GAAAAAGAGAAAATA
Found at i:61984859 original size:43 final size:43
Alignment explanation
Indices: 61984758--61984922 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
61984748 AATGTGATAT
* * ** *
61984758 TCAGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTG-A-AATAATA
61984801 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGT-AAGATAATA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAA-ATAATA
* * *
61984844 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCAGTGAAATGATA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAAATAATA
** * * *
61984887 TCAGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAA
61984923 TGAGTTCAGA
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
42 12 0.11
43 71 0.68
44 18 0.17
45 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (43 bp):
TCAGGCTTCGGGCCTAGCAAGCTATAATGCCAGTGAAATAATA
Found at i:61984945 original size:41 final size:43
Alignment explanation
Indices: 61984857--61984949 Score: 111
Period size: 41 Copynumber: 2.2 Consensus size: 43
61984847 GGCTTCGGGC
* * * *
61984857 CTAGCAGGCTATAATGCCAGTGAAATGATATCAGGCTTCAAGC
1 CTAGCAGGCGATAATGCCAGTGAAATGATATCAGACTTAAAGA
*
61984900 CTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCAGACTTAAAGA
1 CTAGCAGGCGATAATGCCAGTGAAATGA-TATCAGACTTAAAGA
61984941 CTAGCAGGC
1 CTAGCAGGC
61984950 TTCGTGCCGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
41 24 0.55
42 10 0.23
43 10 0.23
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (43 bp):
CTAGCAGGCGATAATGCCAGTGAAATGATATCAGACTTAAAGA
Found at i:61987780 original size:27 final size:26
Alignment explanation
Indices: 61987750--61987880 Score: 109
Period size: 27 Copynumber: 4.9 Consensus size: 26
61987740 GGGCATAATC
* *
61987750 GTCATATTACCATATAAGGGTATTACG
1 GTCATTTTACC-TACAAGGGTATTACG
* * ***
61987777 GTCATTTTGCTCTATAAGGGTATTTTA
1 GTCATTTTAC-CTACAAGGGTATTACG
* *
61987804 GTAATTTTACACTACAAGGGTATTTCG
1 GTCATTTTAC-CTACAAGGGTATTACG
*
61987831 GTCATTTTACCCACAAGGGTATTACG
1 GTCATTTTACCTACAAGGGTATTACG
* **
61987857 ATCATTTTACAGACCAAGGGTATT
1 GTCATTTTACCTA-CAAGGGTATT
61987881 TCAGTAATTT
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 24 0.28
27 60 0.71
28 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAAGGGTATTACG
Found at i:61987890 original size:27 final size:26
Alignment explanation
Indices: 61987792--61987923 Score: 113
Period size: 27 Copynumber: 5.0 Consensus size: 26
61987782 TTTGCTCTAT
* *
61987792 AAGGGTATTTTAGTAATTTTACACTAC
1 AAGGGTATTTCAGTAATTTTACA-AAC
* * **
61987819 AAGGGTATTTCGGTCATTTTACCCAC
1 AAGGGTATTTCAGTAATTTTACAAAC
* * *
61987845 AAGGGTATTAC-GATCATTTTACAGACC
1 AAGGGTATTTCAG-TAATTTTACA-AAC
*
61987872 AAGGGTATTTCAGTAATTTTGCAAATC
1 AAGGGTATTTCAGTAATTTTACAAA-C
* *
61987899 AAGGGTATTTCGGCAATTTTACAAA
1 AAGGGTATTTCAGTAATTTTACAAA
61987924 TTGAGAGTAT
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.01
26 22 0.26
27 61 0.72
28 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (26 bp):
AAGGGTATTTCAGTAATTTTACAAAC
Found at i:61987933 original size:27 final size:27
Alignment explanation
Indices: 61987860--61987935 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
61987850 TATTACGATC
* * * *
61987860 ATTTTACAGACCAAGGGTATTTCAGTA
1 ATTTTACAAATCAAGAGTATTTCAGCA
* * *
61987887 ATTTTGCAAATCAAGGGTATTTCGGCA
1 ATTTTACAAATCAAGAGTATTTCAGCA
**
61987914 ATTTTACAAATTGAGAGTATTT
1 ATTTTACAAATCAAGAGTATTT
61987936 ATGACGCATC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (27 bp):
ATTTTACAAATCAAGAGTATTTCAGCA
Found at i:61990506 original size:22 final size:23
Alignment explanation
Indices: 61990480--61990524 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
61990470 ACCTGATCAG
*
61990480 AATACGACACAT-AATTGCCTGA
1 AATACGACACATAAAGTGCCTGA
61990502 AATACGACACATAAAGTGCCTGA
1 AATACGACACATAAAGTGCCTGA
61990525 TCAGTAAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (23 bp):
AATACGACACATAAAGTGCCTGA
Found at i:61990725 original size:23 final size:23
Alignment explanation
Indices: 61990695--61990773 Score: 88
Period size: 23 Copynumber: 3.4 Consensus size: 23
61990685 GATTCCATCC
*
61990695 AAACACACCAAAAT-GTCCAACCA
1 AAACACACCAAAATAATCC-ACCA
* *
61990718 AAACACACCAATATAATCCTCCA
1 AAACACACCAAAATAATCCACCA
** *
61990741 AAACACACCAGTATAATCCTCCA
1 AAACACACCAAAATAATCCACCA
61990764 AAACACACCA
1 AAACACACCA
61990774 GTATCATATA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 48 0.94
24 3 0.06
ACGTcount: A:0.49, C:0.35, G:0.03, T:0.13
Consensus pattern (23 bp):
AAACACACCAAAATAATCCACCA
Found at i:61990784 original size:28 final size:26
Alignment explanation
Indices: 61990715--61990829 Score: 134
Period size: 23 Copynumber: 4.5 Consensus size: 26
61990705 AAATGTCCAA
61990715 CCAAAACACACC--A-ATATAATCCT
1 CCAAAACACACCAGATATATAATCCT
61990738 CCAAAACACACCAG---TATAATCCT
1 CCAAAACACACCAGATATATAATCCT
61990761 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG-AT-ATATAATCCT
*
61990789 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG-AT-ATATAATCC-T
61990818 CCAAAACACACC
1 CCAAAACACACC
61990830 TACCAAAGAG
Statistics
Matches: 80, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
23 35 0.44
28 33 0.41
29 12 0.15
ACGTcount: A:0.46, C:0.35, G:0.03, T:0.17
Consensus pattern (26 bp):
CCAAAACACACCAGATATATAATCCT
Found at i:62002499 original size:48 final size:48
Alignment explanation
Indices: 62002420--62002512 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 48
62002410 TGATTAACGA
* *
62002420 GATCCCGTGTATGACCATGTCTGGGACATGGCATCAGCATCGATATGC
1 GATCCCGTGTATGACCATATCAGGGACATGGCATCAGCATCGATATGC
* * *
62002468 GATCCTGTGTAAT-ACCATATCAGGGATATGGCTTCAGCATCGATA
1 GATCCCGTGT-ATGACCATATCAGGGACATGGCATCAGCATCGATA
62002513 AATGATTTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 37 0.95
49 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (48 bp):
GATCCCGTGTATGACCATATCAGGGACATGGCATCAGCATCGATATGC
Found at i:62002679 original size:42 final size:42
Alignment explanation
Indices: 62002525--62002679 Score: 112
Period size: 42 Copynumber: 3.5 Consensus size: 42
62002515 TGATTTCGTA
** * * ** *
62002525 TAAGACCATACCTAGGACATGGCATCGATATGAAGTCCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGATGTGTGGTCCCATG
* * * * *
62002567 TAAGACCATGTCTGGGACATGGCGTCGGCACTGATTTGAGACTTCATA
1 TAAGACCATGTCTGGGACATGGCATC-G-A-TG-TGTG-GTC-CCATG
* * *
62002615 TAAGACAATATCTGGGATATGGCATCGATGTGTGGTCCCATG
1 TAAGACCATGTCTGGGACATGGCATCGATGTGTGGTCCCATG
*
62002657 TAAGACCATGTTTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
62002680 TTTGGCACCC
Statistics
Matches: 83, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
42 44 0.53
43 3 0.04
44 4 0.05
45 3 0.04
46 2 0.02
47 3 0.04
48 24 0.29
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATCGATGTGTGGTCCCATG
Found at i:62004008 original size:20 final size:20
Alignment explanation
Indices: 62003957--62004008 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
62003947 TGGACTGAGG
*
62003957 ACACAGGCATGTCACAAGCC
1 ACACAGGCGTGTCACAAGCC
* *
62003977 ACACGGGAGTGTCACAAGCC
1 ACACAGGCGTGTCACAAGCC
*
62003997 ATACAGGCGTGT
1 ACACAGGCGTGT
62004009 GTGACCACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.29, G:0.27, T:0.13
Consensus pattern (20 bp):
ACACAGGCGTGTCACAAGCC
Found at i:62009417 original size:42 final size:42
Alignment explanation
Indices: 62009365--62009493 Score: 109
Period size: 42 Copynumber: 3.1 Consensus size: 42
62009355 TTACATTTAA
* *
62009365 TCTCGTATCGATGCCAATAGCCCA-ACTATGGTCTTA-ACGAAG
1 TCTCATATCGATGCC-ATAGCCCAGA-TATGATCTTACACGAAG
* * *
62009407 TCTCATATCGATGCCATATCCCAGATATGATCTTACATGTAG
1 TCTCATATCGATGCCATAGCCCAGATATGATCTTACACGAAG
* * * * * * * *
62009449 TCTCATATTGATCCCATATCCTAAATATGGTCTAACACGTAG
1 TCTCATATCGATGCCATAGCCCAGATATGATCTTACACGAAG
62009491 TCT
1 TCT
62009494 TAGTAACCCT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
41 16 0.22
42 57 0.78
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
TCTCATATCGATGCCATAGCCCAGATATGATCTTACACGAAG
Found at i:62011366 original size:20 final size:20
Alignment explanation
Indices: 62011313--62011371 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
62011303 AAAAATAACC
*
62011313 TGGGAATTAAGAGGGAATTT
1 TGGGAATGAAGAGGGAATTT
* *
62011333 TGGAAACGGAAGAGGGAATTT
1 TGGGAA-TGAAGAGGGAATTT
62011354 TGGGAATGAAGAGGGAAT
1 TGGGAATGAAGAGGGAAT
62011372 GAAGAGGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.37, C:0.02, G:0.39, T:0.22
Consensus pattern (20 bp):
TGGGAATGAAGAGGGAATTT
Found at i:62012828 original size:18 final size:19
Alignment explanation
Indices: 62012807--62012844 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
62012797 TTTTGAGCAA
*
62012807 TTTAA-TTTTTTTTATTTT
1 TTTAACTTTATTTTATTTT
*
62012825 TTTAACTTTATTTTGTTTT
1 TTTAACTTTATTTTATTTT
62012844 T
1 T
62012845 ATTTGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (19 bp):
TTTAACTTTATTTTATTTT
Found at i:62013195 original size:38 final size:38
Alignment explanation
Indices: 62013139--62013215 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
62013129 CTAAAATTTT
* *
62013139 CGTTTGAAATGATGATTTAACGTGTCACGTCAGCTTAC
1 CGTTTGAAATGATAATTTAACGTGTCACGTCAACTTAC
*
62013177 CGTTTGAAATGATAATTTAACGTGTCATGTCAACTTAC
1 CGTTTGAAATGATAATTTAACGTGTCACGTCAACTTAC
62013215 C
1 C
62013216 ATTATACTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (38 bp):
CGTTTGAAATGATAATTTAACGTGTCACGTCAACTTAC
Found at i:62018054 original size:72 final size:72
Alignment explanation
Indices: 62017958--62018124 Score: 221
Period size: 72 Copynumber: 2.3 Consensus size: 72
62017948 GTTCAACTTT
* * *
62017958 TAGGACAGCTTGCTCTCCATCCGAATAGA-TAACATCCATCATCTGAATGACGTTTT-AGTATAA
1 TAGGACAGTTTGCTCTCCATCCGAAT-GACTAACATCCACCATCCGAATGACGTTTTGA-TATAA
62018021 CTCAACTAC
64 CTCAACTAC
* * * * *
62018030 TAGGAAAGTTTGCTCTCCATCCGAATGACTAATATTCGCCATCCGAATGGCGTTTTGATATAACT
1 TAGGACAGTTTGCTCTCCATCCGAATGACTAACATCCACCATCCGAATGACGTTTTGATATAACT
62018095 CAACTAC
66 CAACTAC
*
62018102 TAGGACATTTTGCTCTCCATCCG
1 TAGGACAGTTTGCTCTCCATCCG
62018125 GATGGCTTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 2 0.02
72 80 0.96
73 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (72 bp):
TAGGACAGTTTGCTCTCCATCCGAATGACTAACATCCACCATCCGAATGACGTTTTGATATAACT
CAACTAC
Found at i:62020422 original size:35 final size:35
Alignment explanation
Indices: 62020376--62020479 Score: 163
Period size: 35 Copynumber: 3.0 Consensus size: 35
62020366 TTACAGTGTT
62020376 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
*
62020411 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAAC
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
* * * *
62020446 AACTGGTATGTTGGATGGTACTGACTCTTATGAG
1 AATTGGTGTGCTGGATGGTACTGGCTCTTATGAG
62020480 TATCTGGTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.20, C:0.13, G:0.32, T:0.35
Consensus pattern (35 bp):
AATTGGTGTGCTGGATGGTACTGGCTCTTATGAGC
Found at i:62020487 original size:35 final size:35
Alignment explanation
Indices: 62020387--62020499 Score: 140
Period size: 35 Copynumber: 3.2 Consensus size: 35
62020377 ATTGGTGTGC
* *
62020387 TGGATGGTACTGGCTCTTATGAGCAAT-TGGTGTGC
1 TGGATGGTACTGGCTCTTATGAG-AATCTGGTATGT
*
62020422 TGGATGGTACTGGCTCTTATGA-ACAACTGGTATGT
1 TGGATGGTACTGGCTCTTATGAGA-ATCTGGTATGT
* *
62020457 TGGATGGTACTGACTCTTATGAGTATCTGGTATGT
1 TGGATGGTACTGGCTCTTATGAGAATCTGGTATGT
*
62020492 TGAATGGT
1 TGGATGGT
62020500 TAACCGAGTG
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
33 1 0.01
34 1 0.01
35 66 0.97
ACGTcount: A:0.20, C:0.12, G:0.31, T:0.36
Consensus pattern (35 bp):
TGGATGGTACTGGCTCTTATGAGAATCTGGTATGT
Found at i:62034114 original size:365 final size:365
Alignment explanation
Indices: 62033444--62034179 Score: 1330
Period size: 365 Copynumber: 2.0 Consensus size: 365
62033434 CCTTCAACAA
* *
62033444 GTGAAATACAAGCCATATTTATAGCCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
1 GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
* *
62033509 GGGACGACTATCTTAAGCCTTAAGGCTTTAGGAAATTTCCTAGAAATTTCTTGAACATATTCTAG
66 GGGACGACTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTAGAAATTTCTTAAACATATTCTAG
*
62033574 AGTCTTCTTGGCTTGGGAAACTGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
131 AGTCTTCTTGGCTTGGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
*
62033639 TGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGTTTGAAAGTAGTTTGAATGCTTCTTA
196 TGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTTA
*
62033704 AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCTAATGGC
261 AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCCAATGGC
62033769 CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
326 CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
*
62033809 GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCTGAATAGTCATATGGGCATTCAAG
1 GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
*
62033874 GGGACGGCTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTA-ACAATTTCTTAAACATATTCTA
66 GGGACGACTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTAGA-AATTTCTTAAACATATTCTA
62033938 GAGTCTTCTTGGCTTGGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTA
130 GAGTCTTCTTGGCTTGGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTA
* *
62034003 ATGGGAAGCTTTATGGACTAGTCCACATTCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTT
195 ATGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTT
*
62034068 AAATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGACTCCAATGG
260 AAATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCCAATGG
* *
62034133 CCATTCAAGTGTGAAAGGCCGAATATGTATAGTCTTTGTGT
325 CCATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
62034174 GTGAAA
1 GTGAAA
62034180 ACATGGAACC
Statistics
Matches: 356, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
364 1 0.00
365 355 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (365 bp):
GTGAAATAAAAGCCATATTTATAACCTAAACTATAGCTAGCCGAATAGTCATATGGGCATTCAAG
GGGACGACTATCTTAAGCCTTAAAGCTTTAGGAAATTTCCTAGAAATTTCTTAAACATATTCTAG
AGTCTTCTTGGCTTGGGAAACCGAATGAGAAGCTACTAGAAGGGGTTGATTCAGCTAGCCATTAA
TGAGAAGCTTTATGGACTAGTCCACATCCGGCCAAGGTGCTTGAAAGTAGTTTGAATGCTTCTTA
AATGTGGCGCCTAGATAAGCTTGAAAGCCTTGGATTAATTGATCATTATGGAGGAATCCAATGGC
CATTCAAGTGTGAAAGGCCGAATATGTATAGTCCTTGTGG
Found at i:62040657 original size:49 final size:50
Alignment explanation
Indices: 62040603--62040702 Score: 123
Period size: 50 Copynumber: 2.0 Consensus size: 50
62040593 GTTATTTAGT
* *
62040603 TCGCATAAGCTTC-C-TGATTTCATCTCTTATGAGCTTCCCGATATACAAC
1 TCGCATAAGCTTCTCGTGATTT-AGCTCATATGAGCTTCCCGATATACAAC
* * * *
62040652 TCGCATGAGCTTCTCGTTATTTAGCTCATATGAGCTTCCCGTTATATAAC
1 TCGCATAAGCTTCTCGTGATTTAGCTCATATGAGCTTCCCGATATACAAC
62040702 T
1 T
62040703 TGGAAAAGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
49 12 0.28
50 26 0.60
51 5 0.12
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (50 bp):
TCGCATAAGCTTCTCGTGATTTAGCTCATATGAGCTTCCCGATATACAAC
Found at i:62045275 original size:25 final size:25
Alignment explanation
Indices: 62045244--62045337 Score: 107
Period size: 25 Copynumber: 3.8 Consensus size: 25
62045234 ATTCAGACCT
* *
62045244 ACAGCTCGTGTGAGTATACCGATTT
1 ACAGCTCGTGTGAGCATACCGATTC
* * * * *
62045269 ATAGCTCATGAGAGCATACCAATCC
1 ACAGCTCGTGTGAGCATACCGATTC
*
62045294 ACAGCTCGAGTGAGCATACCGATTC
1 ACAGCTCGTGTGAGCATACCGATTC
*
62045319 ACAGCTCGTATGAGCATAC
1 ACAGCTCGTGTGAGCATAC
62045338 ATGTACATGA
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCGATTC
Found at i:62046578 original size:25 final size:24
Alignment explanation
Indices: 62046550--62046616 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
62046540 ACCGATTTAT
62046550 AGCTCGTTAGAGCATACCAATCCAC
1 AGCTCG-TAGAGCATACCAATCCAC
* *
62046575 AGCTCAAGT-GAGCATACCGATTCAC
1 AGCTC--GTAGAGCATACCAATCCAC
62046600 AGCTCGTATGAGCATAC
1 AGCTCGTA-GAGCATAC
62046617 ATGTACATGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
23 2 0.06
25 32 0.89
26 1 0.03
27 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (24 bp):
AGCTCGTAGAGCATACCAATCCAC
Found at i:62058758 original size:51 final size:50
Alignment explanation
Indices: 62058639--62058833 Score: 213
Period size: 49 Copynumber: 3.9 Consensus size: 50
62058629 ACTATTGTGA
* * *
62058639 GGTCACGTGTGTAGTACTAACTGCAGGCTACTA--CATGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC-TGTACCAGATAATT
* * *
62058688 GGTCGCATGTGTACTACTAAGTGCAGGCTACTATGCT-TACTC-GAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCTGTAC-CAGATAA-T-T
* * *
62058739 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATG-TGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCTGTACCAGATAATT
* *
62058788 GGTCGCATGTGTAGCACTAAGTGCAGGCTACTATGC-GTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCTGTACCAGATA
62058834 GCTTCGGGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
49 77 0.63
50 6 0.05
51 39 0.32
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCTGTACCAGATAATT
Found at i:62058814 original size:100 final size:100
Alignment explanation
Indices: 62058641--62058823 Score: 305
Period size: 100 Copynumber: 1.8 Consensus size: 100
62058631 TATTGTGAGG
*
62058641 TCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTGTACTACT
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTACTACT
62058706 AAGTGCAGGCTACTATGCTTACTCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCTTACTCGAAAACTGTGA
* ** *
62058741 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTATTGGTCGCATGTGTAGC-AC
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTA-CTAC
62058805 TAAGTGCAGGCTACTATGC
65 TAAGTGCAGGCTACTATGC
62058824 GTACCAGATA
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 76 0.99
101 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAACTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTACTACT
AAGTGCAGGCTACTATGCTTACTCGAAAACTGTGA
Found at i:62063669 original size:40 final size:40
Alignment explanation
Indices: 62063621--62063946 Score: 537
Period size: 40 Copynumber: 8.2 Consensus size: 40
62063611 GGACTAAGAT
*
62063621 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
62063661 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
62063701 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
62063741 CCGAAGGCATCTGTGCTAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
62063781 CCGAAGGCATTTGTGCAAGTTGCTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
62063821 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
62063861 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* ** *
62063901 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
62063940 CCGAAGG
1 CCGAAGG
62063947 TACTTGGGTT
Statistics
Matches: 269, Mismatches: 17, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 15 0.06
40 254 0.94
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:62073686 original size:27 final size:27
Alignment explanation
Indices: 62073656--62073747 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
62073646 ATTACCAAAG
* * *
62073656 TACCCTCGATTTATAGAATCACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
62073683 TACCCTTGATGTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
62073710 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
62073737 TACCCTCGATT
1 TACCCTCGATT
62073748 GTGAAATTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:62073790 original size:27 final size:27
Alignment explanation
Indices: 62073760--62073820 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
62073750 GAAATTATTG
*
62073760 AAATACCCTTATAGGGTAGAATTACCA
1 AAATACCCTTATAGGGTAAAATTACCA
***
62073787 AAATACCCTTATTTTGTAAAATTACCA
1 AAATACCCTTATAGGGTAAAATTACCA
62073814 AAATACC
1 AAATACC
62073821 ATTGGTTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATACCCTTATAGGGTAAAATTACCA
Found at i:62073829 original size:27 final size:27
Alignment explanation
Indices: 62073779--62073907 Score: 127
Period size: 27 Copynumber: 4.8 Consensus size: 27
62073769 TATAGGGTAG
*
62073779 AATTACCAAAATACCCTTATTTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* ** *
62073806 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCTTAATTTGTAA
* *
62073833 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* **
62073860 AATTACCAAAATATCCC-TGATTTACAA
1 AATTACCAAAATA-CCCTTAATTTGTAA
*
62073887 AATTA-CAGAAATACCCCTAAT
1 AATTACCA-AAATACCCTTAAT
62073908 AGGTAAAAAG
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.06
27 75 0.90
28 3 0.04
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:62073890 original size:54 final size:54
Alignment explanation
Indices: 62073779--62073902 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
62073769 TATAGGGTAG
* * * * * ***
62073779 AATTACCAAAATACCCTTATTTTGTAAAATTACCAAAATACCATTGGTTTGTGA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
62073833 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATATCC-CTGATTTACAA
1 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATA-CCACTGATTTACAA
*
62073887 AATTACAGAAATACCC
1 AATTACCGAAATACCC
62073903 CTAATAGGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 58 0.97
55 2 0.03
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:62073935 original size:26 final size:27
Alignment explanation
Indices: 62073896--62073969 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
62073886 AAATTACAGA
*
62073896 AATACCCCTAATAGGTAAAAAGACCGT
1 AATACCCCTTATAGGTAAAAAGACCGT
* **
62073923 AA-AGCCCTTATAGGGTAAAGTGACCGT
1 AATACCCCTTATA-GGTAAAAAGACCGT
62073950 AATACCCCTGTAT-GGTAAAA
1 AATACCCCT-TATAGGTAAAA
62073970 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 8 0.21
27 22 0.58
28 5 0.13
29 3 0.08
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTTATAGGTAAAAAGACCGT
Found at i:62074839 original size:24 final size:24
Alignment explanation
Indices: 62074807--62074853 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
62074797 CAGTTTACCG
**
62074807 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
62074830 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
62074854 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:62076701 original size:29 final size:29
Alignment explanation
Indices: 62076662--62076740 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
62076652 CTTAATAATC
*
62076662 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62076692 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62076721 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62076741 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62085063 original size:29 final size:29
Alignment explanation
Indices: 62085024--62085102 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
62085014 CTTAATAATC
*
62085024 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62085054 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62085083 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62085103 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62087008 original size:31 final size:30
Alignment explanation
Indices: 62086970--62087035 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 30
62086960 GGGCTGTCAC
62086970 ATATGATTTATGAAAAGCCTTCAACCCAGT
1 ATATGATTTATGAAAAGCCTTCAACCCAGT
* **
62087000 GATATGATTTATGAAAAGGCTTCGGCCCAGT
1 -ATATGATTTATGAAAAGCCTTCAACCCAGT
62087031 ATATG
1 ATATG
62087036 TCGAGACCGA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 5 0.16
31 27 0.84
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (30 bp):
ATATGATTTATGAAAAGCCTTCAACCCAGT
Found at i:62087307 original size:41 final size:42
Alignment explanation
Indices: 62087232--62087329 Score: 162
Period size: 41 Copynumber: 2.3 Consensus size: 42
62087222 AAGACAAACT
*
62087232 TTTAGCGGCGTTTTTTAAAAAAACGCCGCTAAAGAACAGGACC
1 TTTAGCGGCGCTTTTT-AAAAAACGCCGCTAAAGAACAGGACC
*
62087275 TTTAGCGGCGCTTTTT-AAAAACGCCGCTAAAGACCAGGACC
1 TTTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGAACAGGACC
62087316 TTTAGCGGCGCTTT
1 TTTAGCGGCGCTTT
62087330 CCCCCAAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 38 0.72
43 15 0.28
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGAACAGGACC
Found at i:62087372 original size:43 final size:43
Alignment explanation
Indices: 62087250--62087396 Score: 183
Period size: 41 Copynumber: 3.5 Consensus size: 43
62087240 CGTTTTTTAA
* * **
62087250 AAAAACGCCGCTAAAGAACAGGACCTTTAGCGGCGCTTT--TT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCC
*
62087291 AAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTCCCCC
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTT-CCCC
* * *
62087335 AAAAACGCCGCTAACGA-CATGATCTTTAGCGACGCTTTCCCC
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCC
*
62087377 AAAAACGCCACTAAAGACCA
1 AAAAACGCCGCTAAAGACCA
62087397 TATATATTTC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
41 38 0.41
42 19 0.20
43 20 0.22
44 16 0.17
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCC
Found at i:62091548 original size:18 final size:18
Alignment explanation
Indices: 62091525--62091568 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
62091515 AAGAATTTTG
* *
62091525 GGGGAAATTTAG-GGATT
1 GGGGAAATGTAGAGAATT
62091542 AGGGGAAATGTAGAGAATT
1 -GGGGAAATGTAGAGAATT
62091561 GGGGAAAT
1 GGGGAAAT
62091569 CTGTTTTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.23
Consensus pattern (18 bp):
GGGGAAATGTAGAGAATT
Found at i:62091786 original size:75 final size:75
Alignment explanation
Indices: 62091691--62092075 Score: 558
Period size: 74 Copynumber: 5.0 Consensus size: 75
62091681 AAGAGTTTTC
62091691 ATAGTGTTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTT
1 ATAGTG-TTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTT
62091756 TATTTGTTATA
65 TATTTGTTATA
*
62091767 ATAGTGTTTTTTGTGGCGTTTTTTTCGTTTTTTAAAAAAACGCCACTAATCTCTCAATTTTCATA
1 ATAGTGTTTTTTGT-G-G-------CGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATA
62091832 TTTATTTTTATTTGTTATA
57 TTTATTTTTATTTGTTATA
* * * *
62091851 ATAGTATTTTTTGTAGCATTTTTT-AAAAAACGCCACTAATCTCTTAATTTTTATATTTATTTTT
1 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
62091915 ATTTGTTATA
66 ATTTGTTATA
* ** * *
62091925 ATAGTGTTTTTTGTGGCATTTTTTTTAAAAATGCCACTAATCTCTCAATTTTCATATTTATTTTT
1 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
62091990 ATTTGTTATA
66 ATTTGTTATA
*
62092000 ATAGTATTTTTTGTGGCG-TTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
1 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
*
62092064 ATTTGATATA
66 ATTTGTTATA
62092074 AT
1 AT
62092076 TTGGAAGCCA
Statistics
Matches: 280, Mismatches: 19, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
74 123 0.44
75 77 0.28
76 7 0.03
77 1 0.00
82 1 0.00
84 71 0.25
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (75 bp):
ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
ATTTGTTATA
Found at i:62091965 original size:149 final size:149
Alignment explanation
Indices: 62091802--62092075 Score: 494
Period size: 149 Copynumber: 1.8 Consensus size: 149
62091792 CGTTTTTTAA
62091802 AAAAACGCCACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTATTTTTTGTAG
1 AAAAACGCCACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTATTTTTTGTAG
* * *
62091867 CATTTTTTAAAAAACGCCACTAATCTCTTAATTTTTATATTTATTTTTATTTGTTATAATAGTGT
66 CATTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTTATTTGATATAATAGTGT
62091932 TTTTTGTGGCATTTTTTTT
131 TTTTTGTGGCATTTTTTTT
* *
62091951 AAAAATGCCACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTATTTTTTGTGG
1 AAAAACGCCACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTATTTTTTGTAG
*
62092016 CGTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTTATTTGATATAAT
66 CATTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTTATTTGATATAAT
62092076 TTGGAAGCCA
Statistics
Matches: 119, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
149 119 1.00
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (149 bp):
AAAAACGCCACTAATCTCTCAATTTTCATATTTATTTTTATTTGTTATAATAGTATTTTTTGTAG
CATTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTTATTTGATATAATAGTGT
TTTTTGTGGCATTTTTTTT
Found at i:62092313 original size:14 final size:14
Alignment explanation
Indices: 62092251--62092324 Score: 60
Period size: 14 Copynumber: 5.2 Consensus size: 14
62092241 AAAATACTAA
62092251 TTAA-TCTAAACCC
1 TTAACTCTAAACCC
* *
62092264 TAAACCTCTCAACCC
1 TTAA-CTCTAAACCC
** *
62092279 TTGTCTCATAAACAC
1 TTAACTC-TAAACCC
*
62092294 TAAACTCTAAACCC
1 TTAACTCTAAACCC
*
62092308 TTAACTCCAAACCC
1 TTAACTCTAAACCC
62092322 TTA
1 TTA
62092325 CACCTTAAAC
Statistics
Matches: 45, Mismatches: 13, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
13 3 0.07
14 24 0.53
15 18 0.40
ACGTcount: A:0.36, C:0.35, G:0.01, T:0.27
Consensus pattern (14 bp):
TTAACTCTAAACCC
Found at i:62092446 original size:21 final size:21
Alignment explanation
Indices: 62092420--62092571 Score: 142
Period size: 21 Copynumber: 6.9 Consensus size: 21
62092410 ACTCTTAAAC
*
62092420 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
62092441 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
* *
62092466 CCTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
*
62092487 CTTAAACCTTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* *
62092508 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
**
62092533 CTTAAACCCCAAACCATATAT
1 CTTAAACCATAAACCATATAT
62092554 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
62092572 AACTATAATG
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
21 65 0.62
22 6 0.06
24 6 0.06
25 28 0.27
ACGTcount: A:0.44, C:0.28, G:0.01, T:0.27
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:62092457 original size:46 final size:46
Alignment explanation
Indices: 62092404--62092494 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 46
62092394 CTTCAAATAT
* *
62092404 TAGTTAACTCTTAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
62092450 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACC
1 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACC
62092495 TTAAACCATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.27, G:0.02, T:0.29
Consensus pattern (46 bp):
TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
Found at i:62092504 original size:67 final size:67
Alignment explanation
Indices: 62092420--62092571 Score: 268
Period size: 67 Copynumber: 2.3 Consensus size: 67
62092410 ACTCTTAAAC
* *
62092420 CTTAAACCCTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCTAAACCATAT
1 CTTAAACCATAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCCAAACCATAT
62092485 AT
66 AT
* *
62092487 CTTAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCTTAAACCCCAAACCATAT
1 CTTAAACCATAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCCAAACCATAT
62092552 AT
66 AT
62092554 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
62092572 AACTATAATG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 81 1.00
ACGTcount: A:0.44, C:0.28, G:0.01, T:0.27
Consensus pattern (67 bp):
CTTAAACCATAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCCCAAACCATAT
AT
Found at i:62092579 original size:7 final size:7
Alignment explanation
Indices: 62092415--62092579 Score: 69
Period size: 7 Copynumber: 22.4 Consensus size: 7
62092405 AGTTAACTCT
*
62092415 TAAACCT
1 TAAACCA
*
62092422 TAAACCC
1 TAAACCA
62092429 TAAACCA
1 TAAACCA
* * *
62092436 TATATCT
1 TAAACCA
62092443 TAAACCA
1 TAAACCA
62092450 TAGTTAACTCA
1 TA---AAC-CA
*
62092461 TAAACCC
1 TAAACCA
*
62092468 TAAACCC
1 TAAACCA
62092475 TAAACCA
1 TAAACCA
* * *
62092482 TATATCT
1 TAAACCA
*
62092489 TAAACCT
1 TAAACCA
62092496 TAAACCA
1 TAAACCA
* * *
62092503 TATATCT
1 TAAACCA
62092510 TAAACCA
1 TAAACCA
62092517 TAGTTAACTCA
1 TA---AAC-CA
*
62092528 TAAACCT
1 TAAACCA
*
62092535 TAAACCC
1 TAAACCA
*
62092542 CAAACCA
1 TAAACCA
* * *
62092549 TATATCT
1 TAAACCA
62092556 TAAACCA
1 TAAACCA
62092563 TAAACCA
1 TAAACCA
*
62092570 TAAACTA
1 TAAACCA
62092577 TAA
1 TAA
62092580 TGATAATTAA
Statistics
Matches: 116, Mismatches: 34, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
7 96 0.83
8 6 0.05
10 6 0.05
11 8 0.07
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (7 bp):
TAAACCA
Found at i:62092797 original size:41 final size:40
Alignment explanation
Indices: 62092736--62092864 Score: 204
Period size: 41 Copynumber: 3.2 Consensus size: 40
62092726 GTTATATGAC
*
62092736 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCT-GT
* *
62092777 TTTTAGCGGCGTTTTTCCAAAAGCGCCTCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCT-GT
*
62092818 TTTTAGCGGTGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
62092858 TTTTAGC
1 TTTTAGC
62092865 TATGTGTTTT
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 9 0.11
41 72 0.89
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
Found at i:62098624 original size:22 final size:22
Alignment explanation
Indices: 62098579--62098621 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
62098569 TAAGCCAACA
*
62098579 ACTACCCTTAATTAAGTTATTC
1 ACTACCCTTAATTAAATTATTC
62098601 ACTACCCTTAATTAAAATTAT
1 ACTACCCTTAATT-AAATTAT
62098622 CACCATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.37, C:0.21, G:0.02, T:0.40
Consensus pattern (22 bp):
ACTACCCTTAATTAAATTATTC
Found at i:62113075 original size:38 final size:38
Alignment explanation
Indices: 62113022--62113096 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
62113012 GTAAATTTCA
62113022 CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGAC
1 CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGAC
*
62113060 CAAGATTCTTTAGCGTTGCCAATCATCTTCCCTGAGA
1 CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGA
62113097 TCATATCCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (38 bp):
CAAGATTCTTAAGCGTTGCCAATCATCTTCCCTGAGAC
Found at i:62119538 original size:47 final size:47
Alignment explanation
Indices: 62119487--62119581 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
62119477 GTGTCAATCT
*
62119487 AAACGAATTATGATTTTTGTTAATTTGGTTTAATGGATATTCATTGA
1 AAACGAATTATAATTTTTGTTAATTTGGTTTAATGGATATTCATTGA
62119534 AAACGAATTATAATTTTTGTTAATTTGGTTTAATGGATATTCATTGA
1 AAACGAATTATAATTTTTGTTAATTTGGTTTAATGGATATTCATTGA
62119581 A
1 A
62119582 GTTATTAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (47 bp):
AAACGAATTATAATTTTTGTTAATTTGGTTTAATGGATATTCATTGA
Found at i:62123942 original size:28 final size:28
Alignment explanation
Indices: 62123874--62124027 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
62123864 CATGAGATTG
* * * *
62123874 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
62123903 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62123931 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
62123959 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62123987 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62124014 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62124028 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.65
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62132083 original size:28 final size:28
Alignment explanation
Indices: 62132015--62132168 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
62132005 CATGAGATTG
* * * *
62132015 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
62132044 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62132072 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
62132100 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62132128 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62132155 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62132169 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.65
29 18 0.16
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62133768 original size:37 final size:37
Alignment explanation
Indices: 62133718--62133791 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
62133708 CATTTAAGCA
62133718 ACCTTAGTATGAACCATTGGTTAGCAGGTAAGAGGGT
1 ACCTTAGTATGAACCATTGGTTAGCAGGTAAGAGGGT
62133755 ACCTTAGTATGAACCATTGGTTAGCAGGTAAGAGGGT
1 ACCTTAGTATGAACCATTGGTTAGCAGGTAAGAGGGT
62133792 TATGAGGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (37 bp):
ACCTTAGTATGAACCATTGGTTAGCAGGTAAGAGGGT
Found at i:62135549 original size:25 final size:24
Alignment explanation
Indices: 62135510--62135557 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
62135500 GAGAAAAAAG
*
62135510 TAAGAAGGATAAAAATATATATTTT
1 TAAGAAAGATAAAAA-ATATATTTT
* *
62135535 TAAGAAAGATGAAAAATTTATTT
1 TAAGAAAGATAAAAAATATATTT
62135558 CCATTCCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.35
Consensus pattern (24 bp):
TAAGAAAGATAAAAAATATATTTT
Found at i:62149610 original size:51 final size:48
Alignment explanation
Indices: 62149550--62149695 Score: 211
Period size: 51 Copynumber: 2.9 Consensus size: 48
62149540 TAGCCAAAGG
*
62149550 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATC-GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
*
62149601 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATC-GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
62149650 TATTCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TA-TCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
62149696 TCACAATAGA
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
49 41 0.47
50 5 0.06
51 42 0.48
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
TATCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:62154614 original size:28 final size:28
Alignment explanation
Indices: 62154581--62154635 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
62154571 TTGGCCCGTG
*
62154581 TGCTTCAGACAGCCATGACACGCCCATA
1 TGCTTCACACAGCCATGACACGCCCATA
* *
62154609 TGCTTCACACGGCCATGACATGCCCAT
1 TGCTTCACACAGCCATGACACGCCCAT
62154636 GTCCTAGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.36, G:0.18, T:0.20
Consensus pattern (28 bp):
TGCTTCACACAGCCATGACACGCCCATA
Found at i:62155639 original size:47 final size:49
Alignment explanation
Indices: 62155571--62155839 Score: 226
Period size: 46 Copynumber: 5.7 Consensus size: 49
62155561 GTAAGGTGCC
*
62155571 GATGCCATGTGCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCT
* * * *
62155618 GATGCCATGTCCTAGACATGGTCATACACTGACT-ATCATCTCATAG-CA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGTCT
* * *
62155666 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCT
* * * *
62155712 GATG-CATGTCCCAGACAT-GTCTTACAGTAGCAC-TCGTCTCAA-TGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT-CT
* * * * * *
62155758 GATGCTATGTCCCAGACATGGTCTTACACTAGCTC-TCATAAT-ATGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAAGTCT
* *
62155806 AATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
62155840 CACTAACCCA
Statistics
Matches: 184, Mismatches: 26, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 77 0.42
47 77 0.42
48 27 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTCT
Found at i:62155716 original size:46 final size:46
Alignment explanation
Indices: 62155571--62155833 Score: 200
Period size: 47 Copynumber: 5.6 Consensus size: 46
62155561 GTAAGGTGCC
* * * *
62155571 GATGCCATGTGCCAGACATGGTCTTACACTGGCTCATATCTCAAG-T
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAGGCT
* * * * *
62155617 CGATGCCATGTCCTAGACATGGTCATACACTGAC-TATCATCTCATAGCA
1 -GATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCA-GGCT
62155666 GATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AGGCT
* * * * *
62155712 GATGCATGTCCCAGACAT-GTCTTACAGTAGCACT-CGTCTCAATGCT
1 GATGCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTC-AGGCT
* * *
62155758 GATGCTATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-ATGGCC
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCA-GGCT
*
62155806 AATGCATGTCCCAGACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
62155834 AGCTCACACT
Statistics
Matches: 180, Mismatches: 25, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
46 73 0.41
47 79 0.44
48 27 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAGGCT
Found at i:62163227 original size:47 final size:46
Alignment explanation
Indices: 62163158--62163427 Score: 196
Period size: 47 Copynumber: 5.8 Consensus size: 46
62163148 GGTAAGGTGC
*
62163158 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCAAGT
* * * *
62163205 CGATGCCATGTCCTAGACATGGTCATACACTAACT-ATCATCTCGTAG-
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTC-AAGT
** * * *
62163252 CAGATGCATGTCCCAGACATGTCTTACACCGGCTTA-CATCTCGAGGC
1 C-GATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTC-AAGT
* * *
62163299 CGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCGA-T
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAAGT
* * * **
62163343 GCTGGTGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTGT
1 -C-GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCATCAT-CTCAAGT
*
62163392 CCGATGCATGTCCTAGACATGTCTTACACTAGCTCA
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCA
62163428 AAATAACCCA
Statistics
Matches: 180, Mismatches: 30, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 71 0.39
47 79 0.44
48 26 0.14
49 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCAAGT
Found at i:62163404 original size:94 final size:93
Alignment explanation
Indices: 62163159--62163425 Score: 289
Period size: 94 Copynumber: 2.8 Consensus size: 93
62163149 GTAAGGTGCC
*
62163159 GATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATATCTCAAGT-CGATGCCATGTCCTAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGT---GTCCGATG-CATGTCCTAG
* *
62163221 ACATGGTCATACACTAACTATCATCTCGTAGCA
62 ACAT-GTCTTACACTAGCTATCATCTCGTAGCA
* * * * *
62163254 GATG-CATGTCCCAGACAT-GTCTTACACCGGCT-TACATCTCGAGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAT-GTGTCCGATGCATGTCCTAGAC
* *
62163316 ATGTCTTACACTAGC-ACTCGTCTCG-ATGCT
64 ATGTCTTACACTAGCTA-TCATCTCGTA-GCA
*
62163346 GGTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGTCCGATGCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGTCCGATGCATGTCCTAGACA
62163411 TGTCTTACACTAGCT
65 TGTCTTACACTAGCT
62163426 CAAAATAACC
Statistics
Matches: 144, Mismatches: 16, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
91 2 0.01
92 23 0.16
93 39 0.27
94 70 0.49
95 10 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGTCCGATGCATGTCCTAGACAT
GTCTTACACTAGCTATCATCTCGTAGCA
Found at i:62166402 original size:20 final size:20
Alignment explanation
Indices: 62166377--62166428 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
62166367 GAGGCAATGC
62166377 ACACGCCCGTGTGCGTTGGG
1 ACACGCCCGTGTGCGTTGGG
*
62166397 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCGTTGGG
62166417 ACACGCCCGTGT
1 ACACGCCCGTGT
62166429 CCCTTACCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.33, G:0.35, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGCGTTGGG
Found at i:62168144 original size:5 final size:5
Alignment explanation
Indices: 62168134--62168158 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
62168124 TATTGGGGTT
62168134 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
62168159 AAATGAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:62170567 original size:43 final size:43
Alignment explanation
Indices: 62170499--62170582 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
62170489 TACATGAATC
* *
62170499 ACATCCACCATGAACTCGGACCTCTCAACGAGCTCGGATGCTT
1 ACATCCACAATGAACTCGAACCTCTCAACGAGCTCGGATGCTT
* *
62170542 ACATCCATAATGAACTCGAATCTCTCAACGAGCTCGGATGC
1 ACATCCACAATGAACTCGAACCTCTCAACGAGCTCGGATGC
62170583 CACATATCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (43 bp):
ACATCCACAATGAACTCGAACCTCTCAACGAGCTCGGATGCTT
Found at i:62177214 original size:47 final size:47
Alignment explanation
Indices: 62177150--62177399 Score: 428
Period size: 47 Copynumber: 5.3 Consensus size: 47
62177140 AAATTGTATA
62177150 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62177197 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62177244 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62177291 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
62177338 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
62177385 TATAAATGTGATAAG
1 TATATATGTGATAAG
62177400 TCCCGAAGGG
Statistics
Matches: 193, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 193 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:62178869 original size:43 final size:43
Alignment explanation
Indices: 62178821--62178923 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
62178811 TTGGTTTTCA
62178821 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
62178864 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
62178907 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
62178924 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:62178940 original size:29 final size:29
Alignment explanation
Indices: 62178905--62178978 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
62178895 GTTGTGAGAT
* *
62178905 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
62178934 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
62178963 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62178979 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:62179411 original size:35 final size:36
Alignment explanation
Indices: 62179354--62179421 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
62179344 GAAGGCATTT
*
62179354 GTGCGAGTACTAATTCCGGGCTAAG-CCCGAAGTTG
1 GTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGTTG
62179389 GTGCGAGTTACTAAATCC-GGCTAAGTCCCGAAG
1 GTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAG
62179422 AGCATTCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
35 14 0.47
36 16 0.53
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (36 bp):
GTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGTTG
Found at i:62179484 original size:39 final size:39
Alignment explanation
Indices: 62179403--62179557 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 39
62179393 GAGTTACTAA
62179403 ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAT-T
* *
62179442 ATCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATT
* ** * *
62179481 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTG-TT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATT
* * *
62179519 ATGTCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 A--TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
62179558 CGTGTATTCG
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 3 0.03
39 34 0.35
40 60 0.62
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATT
Found at i:62183874 original size:22 final size:22
Alignment explanation
Indices: 62183846--62183919 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
62183836 GTATATATAT
62183846 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
62183868 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
62183891 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
62183913 ATGTGAT
1 ATGTGAT
62183920 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:62183961 original size:47 final size:47
Alignment explanation
Indices: 62183841--62184088 Score: 401
Period size: 47 Copynumber: 5.3 Consensus size: 47
62183831 AAAGTGTATA
62183841 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62183888 --TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
62183933 TATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
62183980 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
62184027 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
62184074 TATAAATGTGATAAG
1 TATATATGTGATAAG
62184089 TCCCGAAGGG
Statistics
Matches: 187, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
45 45 0.24
47 142 0.76
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:62192795 original size:12 final size:12
Alignment explanation
Indices: 62192778--62192802 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62192768 CATTCCGAAG
62192778 TATATATATACA
1 TATATATATACA
62192790 TATATATATACA
1 TATATATATACA
62192802 T
1 T
62192803 GAGTATGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATATATACA
Found at i:62193281 original size:29 final size:29
Alignment explanation
Indices: 62193246--62193317 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
62193236 GTTGTGAGAT
* *
62193246 TGGCACTAAGTGTGTGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGTGAG-TTGAAAGTACA
*
62193275 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGTGAGTTGAAAGTACA
62193304 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
62193318 CGTGGTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGTGAGTTGAAAGTACA
Found at i:62198920 original size:93 final size:93
Alignment explanation
Indices: 62198808--62199073 Score: 446
Period size: 93 Copynumber: 2.9 Consensus size: 93
62198798 CGCCCATAAG
62198808 CGAACTCGGACTCAACTCAACGA-TCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGT-TCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
*
62198872 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AATGAGCTCGGATGCCTAGTTACATCTCA
* *
62198901 CGAACTCGGACTCAACTCAACGAGTTTAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
62198966 ATGAGCTCGGATGCCTAGTTACATCTCA
66 ATGAGCTCGGATGCCTAGTTACATCTCA
*
62198994 CGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCATCTATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
* *
62199058 AATGAGTTTGGATGCC
65 AATGAGCTCGGATGCC
62199074 CAAATATCCG
Statistics
Matches: 163, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
92 1 0.01
93 161 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ATGAGCTCGGATGCCTAGTTACATCTCA
Found at i:62198922 original size:47 final size:47
Alignment explanation
Indices: 62198855--62199023 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 47
62198845 ATCCATAAGT
62198855 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
** * * * *
62198902 GAACTCGGACTCAACTCAACGAG-T-TTA-GAC--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
*
62198948 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
62198995 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
62199024 CGTTCGCATC
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 3 0.03
46 23 0.23
47 51 0.52
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:62199065 original size:46 final size:45
Alignment explanation
Indices: 62198802--62199065 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 45
62198792 GTAACTCGCC
62198802 CATAAGCGAACTCGGACTCAACTCAACGA-TCTCAGG-CGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGT-TC-GGACGTTCGCAT
* * *
62198847 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* **
62198897 C-TCA-CGAACTCGGACTCAACTCAACGAGTTTAGACGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
62198940 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
*
62198990 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
62199033 CTATAAGTGAACTCGGACTCAACTCAATGAGTT
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGTT
62199066 TGGATGCCCA
Statistics
Matches: 174, Mismatches: 24, Indels: 40
0.73 0.10 0.17
Matches are distributed among these distances:
42 6 0.03
43 7 0.04
44 3 0.02
45 6 0.03
46 79 0.45
47 53 0.30
48 4 0.02
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:62201204 original size:51 final size:51
Alignment explanation
Indices: 62201128--62201225 Score: 169
Period size: 51 Copynumber: 1.9 Consensus size: 51
62201118 CACATCCCTA
*
62201128 ATGAATCACATCCACCATGAACTCGAACCTCTTAATGAGCTCGGATGTTAC
1 ATGAATCACATCCACCATGAACTCGAACCTCTCAATGAGCTCGGATGTTAC
* *
62201179 ATGAATCATATCCACTATGAACTCGAACCTCTCAATGAGCTCGGATG
1 ATGAATCACATCCACCATGAACTCGAACCTCTCAATGAGCTCGGATG
62201226 CTGCATATCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
ATGAATCACATCCACCATGAACTCGAACCTCTCAATGAGCTCGGATGTTAC
Found at i:62201484 original size:22 final size:22
Alignment explanation
Indices: 62201439--62201484 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
62201429 ATAATTCATA
**
62201439 ATTATAATAAAGAATTTATCAC
1 ATTATAATAAAGAATTTAAAAC
*
62201461 ATTATATTAAAGAATTTAAAAC
1 ATTATAATAAAGAATTTAAAAC
62201483 AT
1 AT
62201485 ACTACCATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAGAATTTAAAAC
Found at i:62204658 original size:20 final size:22
Alignment explanation
Indices: 62204614--62204656 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
62204604 CACTAACAAC
62204614 TAATATATAATTATATTTTATT
1 TAATATATAATTATATTTTATT
62204636 TAATATAT-ATT-TATTGTTATT
1 TAATATATAATTATATT-TTATT
62204657 AACCTGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 8 0.40
22 8 0.40
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TAATATATAATTATATTTTATT
Found at i:62210231 original size:43 final size:43
Alignment explanation
Indices: 62210166--62210332 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
62210156 AGCTCGTACA
* * *
62210166 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * *
62210208 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCGA-TTAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC-ACAT-ATCG
* ** *
62210251 A-GTCCAATGTCCTAGACATGGTCTTACACATAATCACA-ATACA
1 ATG-CCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
62210294 ATGCCAATGTCTCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
62210333 CTCGGTAACC
Statistics
Matches: 97, Mismatches: 19, Indels: 16
0.73 0.14 0.12
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 84 0.87
44 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:62213460 original size:45 final size:45
Alignment explanation
Indices: 62213426--62213556 Score: 147
Period size: 45 Copynumber: 2.9 Consensus size: 45
62213416 TTCATCTAAT
* *
62213426 TCATGATGCCATAACATCTTTTAGCTATGGTCTTACTCATTAGAA
1 TCATGATACCATAACATCTTTCAGCTATGGTCTTACTCATTAGAA
* * * * *
62213471 TCGTGATACCATAACGTCTTTCATCTATGGTCTTACTCGTTAAAA
1 TCATGATACCATAACATCTTTCAGCTATGGTCTTACTCATTAGAA
** * *
62213516 TTGTGATGCCATAACGTCTTTC-GACTATGGTCTTACTCATT
1 TCATGATACCATAACATCTTTCAG-CTATGGTCTTACTCATT
62213557 TTCGGTATGA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (45 bp):
TCATGATACCATAACATCTTTCAGCTATGGTCTTACTCATTAGAA
Found at i:62213568 original size:45 final size:44
Alignment explanation
Indices: 62213428--62213573 Score: 127
Period size: 45 Copynumber: 3.2 Consensus size: 44
62213418 CATCTAATTC
* *
62213428 ATGATGCCATAACATCTTTTAGCTATGGTCTTACTCATTAGAATCG-
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCATT---ATCGT
* * * ***
62213474 -TGATACCATAACGTCTTTCATCTATGGTCTTACTCGTTAAAATT
1 ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCATT-ATCGT
* *
62213518 GTGATGCCATAACGTCTTTC-GACTATGGTCTTACTCATTTTCGGT
1 ATGATGCCATAACGTCTTTCAG-CTATGGTCTTACTCATTATC-GT
62213563 ATGATGCCATA
1 ATGATGCCATA
62213574 GTTTGTTTCA
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
43 2 0.03
45 78 0.98
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (44 bp):
ATGATGCCATAACGTCTTTCAGCTATGGTCTTACTCATTATCGT
Found at i:62215371 original size:46 final size:46
Alignment explanation
Indices: 62215234--62215406 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
62215224 TCACTTGTGT
* * * *
62215234 GAGCTAGTGTAAGACATGTCTAGAACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GACGA
* * * *
62215280 GAGCTAATGTAAGACCATG-CTTGGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTC-TAGGACAT-GCATCGGCCTCGAGACGA
*
62215328 GTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG-A
* *
62215375 -AGCCAGTGTGAGACATGTCTAGGACATGCATC
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATC
62215407 AGCTATGAGA
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 58 0.55
47 22 0.21
48 24 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGA
Found at i:62215639 original size:46 final size:48
Alignment explanation
Indices: 62215495--62215764 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 48
62215485 TTGTGTGAGC
* * * *
62215495 TAGTGTAAGA-CATGTCTAGAACAT-GCATCGGCCAC-ATAATG-AGAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA-GATGTA-AGT
* * * * *
62215541 CAGTGTAAGACCATGTCTTGGACATGGCATCGGCATTGAGACG--AGT
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGT
*
62215587 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGT
1 --TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGT
* ** *
62215635 TAGTGTGAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACATAAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGT
* ** * *
62215681 CAGTGTAAGACCATGTCTAGGACATGGCATCAACAC-AGATATGATAGAGCT
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCGAGATG-TA-AG-T
*
62215732 T-GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGC
62215765 ACCTGTACCC
Statistics
Matches: 179, Mismatches: 32, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
46 74 0.41
47 39 0.22
48 31 0.17
49 4 0.02
50 31 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGT
Found at i:62215642 original size:257 final size:257
Alignment explanation
Indices: 62215178--62215663 Score: 893
Period size: 257 Copynumber: 1.9 Consensus size: 257
62215168 AGAGTTCCCA
62215178 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTGAGCTAGTG
1 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTGAGCTAGTG
* *
62215243 TAAGACATGTCTAGAACATGCATCGGCCACATTATGAGAGCTAATGTAAGACCATGCTTGGGACA
66 TAAGACATGTCTAGAACATGCATCGGCCACATAATGAGAGCCAATGTAAGACCATGCTTGGGACA
62215308 TGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG
131 TGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG
62215373 TAAGCCAGTGTGAGACATGTCTAGGACATGCATCAGCTATGAGATGTGTTAGTGTATAACTG
196 TAAGCCAGTGTGAGACATGTCTAGGACATGCATCAGCTATGAGATGTGTTAGTGTATAACTG
62215435 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTGAGCTAGTG
1 TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTGAGCTAGTG
*
62215500 TAAGACATGTCTAGAACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTCTT-GGAC
66 TAAGACATGTCTAGAACATGCATCGGCCACATAATGAGAGCCAATGTAAGACCATG-CTTGGGAC
* *
62215564 ATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAT
130 ATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAC
**
62215629 GTAAGTTAGTGTGAGACATGTCTAGGACATGCATC
195 GTAAGCCAGTGTGAGACATGTCTAGGACATGCATC
62215664 GGCCTCGAGA
Statistics
Matches: 221, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
257 218 0.99
258 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (257 bp):
TTTGAAACTAGGAAATAAATAGGATATTCATGCCATGACGTTTGGGTCACTTGTGTGAGCTAGTG
TAAGACATGTCTAGAACATGCATCGGCCACATAATGAGAGCCAATGTAAGACCATGCTTGGGACA
TGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACG
TAAGCCAGTGTGAGACATGTCTAGGACATGCATCAGCTATGAGATGTGTTAGTGTATAACTG
Found at i:62222856 original size:30 final size:30
Alignment explanation
Indices: 62222822--62222879 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
62222812 TTTTTAGACA
* *
62222822 TAGGGGTAAAATGGTCATTTTATCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
62222852 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
62222880 ATATGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:62223354 original size:46 final size:46
Alignment explanation
Indices: 62223217--62223392 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
62223207 TCACTTGTGT
* * * * **
62223217 GAGCTAGTGTAAGACATGTCTGGGACATTCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GACAA
* * * * * *
62223263 GAGCCAGTATAAGACCATATCTGGGACATGGCATCGGCATTGAGACAA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGACAA
*
62223311 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACATA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACA-A
*
62223358 -AGCTAGTGTGAGACATG-CTTGGGACATGCATCGAC
1 GAGCTAGTGTAAGACATGTC-TGGGACATGCATCGAC
62223393 TACAAGTTTT
Statistics
Matches: 106, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 57 0.54
47 27 0.25
48 20 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACAA
Found at i:62223472 original size:50 final size:49
Alignment explanation
Indices: 62223407--62223540 Score: 171
Period size: 50 Copynumber: 2.7 Consensus size: 49
62223397 AGTTTTTTCA
*
62223407 GTGTAAGAACCTGTCTGGGACATGGCATCGGCACA-ACTATGCTATAGCTT
1 GTGTAAG-ACCTGTCTGGGACATGGCATCGGCACAGA-TATGCTAGAGCTT
* * * *
62223457 GTGTAAGACCATGTCTAGGACATGGCATTGGGACAGATATGTTAGAGCTT
1 GTGTAAGACC-TGTCTGGGACATGGCATCGGCACAGATATGCTAGAGCTT
*
62223507 GTGTAAGACCTTGTCTGGGACATGGCATCCGCAC
1 GTGTAAGACC-TGTCTGGGACATGGCATCGGCAC
62223541 CTACACCCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
49 3 0.04
50 68 0.94
51 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (49 bp):
GTGTAAGACCTGTCTGGGACATGGCATCGGCACAGATATGCTAGAGCTT
Found at i:62227519 original size:48 final size:47
Alignment explanation
Indices: 62227377--62227555 Score: 154
Period size: 48 Copynumber: 3.8 Consensus size: 47
62227367 GTTATGTGCA
* * * *
62227377 ATCCCATGTAAGACCATTTCTAGGACATGGCTTTGGCATCAATATGTA
1 ATCCCATGTAAGACCATATCTAGGACAT-GCATTGGCATCGATATGTG
** * * * **
62227425 ATTTCGTGTAAGACCATAGT-T-GGGC-T--ATTGGCATCGATCTACG
1 ATCCCATGTAAGACCATA-TCTAGGACATGCATTGGCATCGATATGTG
*
62227468 ATCCCATGTAAGACCATATCTAGGACATAGCATTGACATCGATATGTG
1 ATCCCATGTAAGACCATATCTAGGACAT-GCATTGGCATCGATATGTG
*
62227516 ATCCCATGTAAGACCATATCT-GAGATATGGCATTGGCATC
1 ATCCCATGTAAGACCATATCTAG-GACAT-GCATTGGCATC
62227556 TTACCATGTG
Statistics
Matches: 101, Mismatches: 22, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 27 0.27
44 3 0.03
45 1 0.01
46 1 0.01
47 4 0.04
48 63 0.62
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
ATCCCATGTAAGACCATATCTAGGACATGCATTGGCATCGATATGTG
Found at i:62235929 original size:55 final size:53
Alignment explanation
Indices: 62235842--62236096 Score: 252
Period size: 55 Copynumber: 4.8 Consensus size: 53
62235832 ATTAGGGTTT
* *
62235842 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
62235897 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
62235952 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * *
62236005 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTT-GAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * * *
62236054 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
62236097 GTACCCATGT
Statistics
Matches: 169, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 42 0.25
54 10 0.06
55 67 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:62236048 original size:108 final size:110
Alignment explanation
Indices: 62235852--62236049 Score: 321
Period size: 108 Copynumber: 1.8 Consensus size: 110
62235842 AAGGATACCG
*
62235852 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
62235917 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* *
62235962 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
62236024 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
62236050 TGAAAAGGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:62236309 original size:16 final size:16
Alignment explanation
Indices: 62236288--62236318 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62236278 ATAAATTTGA
62236288 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
62236304 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
62236319 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:62238042 original size:19 final size:16
Alignment explanation
Indices: 62238018--62238059 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 16
62238008 TTAATATTTA
62238018 TATTATACTATTATAGGTT
1 TATTATA-TATT-TA-GTT
62238037 TATTATATATTTAGTT
1 TATTATATATTTAGTT
62238053 T-TTATAT
1 TATTATAT
62238060 GTTATAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.26
16 4 0.17
17 2 0.09
18 4 0.17
19 7 0.30
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (16 bp):
TATTATATATTTAGTT
Found at i:62238059 original size:15 final size:18
Alignment explanation
Indices: 62238018--62238065 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 18
62238008 TTAATATTTA
62238018 TATTATACTATTATAGGTT
1 TATTATA-TATTATAGGTT
62238037 TATTATATATT-TA-GTT
1 TATTATATATTATAGGTT
*
62238053 T-TTATATGTTATA
1 TATTATATATTATA
62238066 ACTTATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
17 2 0.07
18 4 0.15
19 7 0.26
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.58
Consensus pattern (18 bp):
TATTATATATTATAGGTT
Found at i:62238080 original size:5 final size:5
Alignment explanation
Indices: 62238070--62238095 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
62238060 GTTATAACTT
62238070 ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA A
62238096 GTGTAGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:62244538 original size:17 final size:17
Alignment explanation
Indices: 62244518--62244557 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
62244508 CTAATTAATC
*
62244518 TAAATAAGAAGTAGTTT
1 TAAACAAGAAGTAGTTT
*
62244535 TAAACAAGAGGTAGTTT
1 TAAACAAGAAGTAGTTT
62244552 TAAACA
1 TAAACA
62244558 CAATTTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.30
Consensus pattern (17 bp):
TAAACAAGAAGTAGTTT
Found at i:62262213 original size:118 final size:120
Alignment explanation
Indices: 62261993--62262214 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 120
62261983 TCCTCGTTCA
*
62261993 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
62262058 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
62262113 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAA-GCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
62262174 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
62262215 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 3 0.03
118 42 0.47
119 32 0.36
120 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:62262214 original size:40 final size:40
Alignment explanation
Indices: 62261991--62262214 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
62261981 GCTCCTCGTT
* *
62261991 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62262031 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62262071 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62262111 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62262150 CAAA-GCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62262190 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62262215 CATCATTCAA
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
37 2 0.01
38 6 0.04
39 38 0.23
40 114 0.70
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62270142 original size:118 final size:119
Alignment explanation
Indices: 62269961--62270182 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
62269951 TCCTCGTTCA
*
62269961 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
62270026 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
62270080 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
62270142 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
62270183 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 66 0.73
119 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:62270182 original size:40 final size:40
Alignment explanation
Indices: 62269959--62270182 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
62269949 GCTCCTCGTT
* *
62269959 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62269999 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62270039 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62270079 C-AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62270117 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62270158 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62270183 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 24 0.15
39 21 0.13
40 107 0.65
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62276308 original size:6 final size:6
Alignment explanation
Indices: 62276299--62276367 Score: 63
Period size: 6 Copynumber: 11.0 Consensus size: 6
62276289 AAAAGCATGT
62276299 GAAAAA GAAAAA GAAAAA GAAAAA GAATGAAA GAAAATA G--AAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAA--AAA GAAAA-A GAAAAA GAAAAA
62276348 GAGAACAA -AAGAAA GAAAAA
1 GA-AA-AA GAA-AAA GAAAAA
62276368 AGAGATTGAG
Statistics
Matches: 54, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
4 2 0.04
5 2 0.04
6 34 0.63
7 8 0.15
8 8 0.15
ACGTcount: A:0.77, C:0.01, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:62276343 original size:31 final size:31
Alignment explanation
Indices: 62276308--62276366 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
62276298 TGAAAAAGAA
62276308 AAAGAAAAAGA-AA-AAGAATGAAAGAAAATAG
1 AAAGAAAAAGAGAACAA-AA-GAAAGAAAATAG
62276339 AAAGAAAAAGAGAACAAAAGAAAGAAAA
1 AAAGAAAAAGAGAACAAAAGAAAGAAAA
62276367 AAGAGATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
31 20 0.77
32 4 0.15
33 2 0.08
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.03
Consensus pattern (31 bp):
AAAGAAAAAGAGAACAAAAGAAAGAAAATAG
Found at i:62276352 original size:27 final size:26
Alignment explanation
Indices: 62276301--62276370 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
62276291 AAGCATGTGA
*
62276301 AAAAGAAAAAGAAAAAGAAAAAGAAT
1 AAAAGAAAAAGAAAAAGAAAAAGAAC
* *
62276327 GAAAGAAAATAGAAAGAA-AAAGAGAAC
1 AAAAGAAAA-AGAAA-AAGAAAAAGAAC
*
62276354 AAAAGAAAGA-AAAAAGA
1 AAAAGAAAAAGAAAAAGA
62276371 GATTGAGAGC
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
24 2 0.06
25 4 0.11
26 9 0.25
27 19 0.53
28 2 0.06
ACGTcount: A:0.77, C:0.01, G:0.19, T:0.03
Consensus pattern (26 bp):
AAAAGAAAAAGAAAAAGAAAAAGAAC
Found at i:62278089 original size:31 final size:30
Alignment explanation
Indices: 62278054--62278132 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 30
62278044 AATCAGCTCT
*
62278054 ATTCTAGCTTATTGAGCTTGATTCAACTCGA
1 ATTCTAGCTTATTGAGCTTAATTCAACTC-A
*
62278085 ATTCTAGCTCATTGAGCTTAATTCAACTCA
1 ATTCTAGCTTATTGAGCTTAATTCAACTCA
*
62278115 ACT-TAGCTTAATTGAGCT
1 ATTCTAGCTT-ATTGAGCT
62278133 CATTTATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 5 0.12
30 11 0.26
31 27 0.63
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (30 bp):
ATTCTAGCTTATTGAGCTTAATTCAACTCA
Found at i:62278459 original size:13 final size:13
Alignment explanation
Indices: 62278441--62278466 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62278431 TCCTAAAAGG
62278441 GAATTAATTTGTT
1 GAATTAATTTGTT
62278454 GAATTAATTTGTT
1 GAATTAATTTGTT
62278467 ACAACTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GAATTAATTTGTT
Found at i:62281523 original size:27 final size:27
Alignment explanation
Indices: 62281478--62281581 Score: 109
Period size: 27 Copynumber: 3.9 Consensus size: 27
62281468 TACAATGACT
* *
62281478 ATAATACCCCTGTAAGGTAAAATAACT
1 ATAATACCCCTGTAGGGTAAAATAACC
*
62281505 ATAATACCCCTCTAGGGTAAAATAACC
1 ATAATACCCCTGTAGGGTAAAATAACC
* * * *
62281532 GTAATGCCCCTGTAGGATAAAATGACC
1 ATAATACCCCTGTAGGGTAAAATAACC
* * * *
62281559 GTAATATCCCTATATGGTAAAAT
1 ATAATACCCCTGTAGGGTAAAAT
62281582 GACAATTATG
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.26
Consensus pattern (27 bp):
ATAATACCCCTGTAGGGTAAAATAACC
Found at i:62281553 original size:54 final size:54
Alignment explanation
Indices: 62281479--62281581 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
62281469 ACAATGACTA
* *
62281479 TAATACCCCTGTAAGGTAAAATAACTATAATACCCCTCTAGGGTAAAATAACCG
1 TAATACCCCTGTAAGGTAAAATAACCATAATACCCCTATAGGGTAAAATAACCG
* * * * *
62281533 TAATGCCCCTGT-AGGATAAAATGACCGTAATATCCCTATATGGTAAAAT
1 TAATACCCCTGTAAGG-TAAAATAACCATAATACCCCTATAGGGTAAAAT
62281582 GACAATTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.07
54 38 0.93
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (54 bp):
TAATACCCCTGTAAGGTAAAATAACCATAATACCCCTATAGGGTAAAATAACCG
Found at i:62281777 original size:27 final size:27
Alignment explanation
Indices: 62281720--62281793 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
62281710 TTGGAGGAAG
* *
62281720 TACTG-TACTGGTGACTATGTCACATT
1 TACTGTTACTGGTGACTATGCCAAATT
* * *
62281746 CACTGTTACTGGTGGCTTTGCCAAATT
1 TACTGTTACTGGTGACTATGCCAAATT
*
62281773 TACTGTTTCTGGT-AGCTATGC
1 TACTGTTACTGGTGA-CTATGC
62281794 TGCATTATTA
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
26 4 0.11
27 33 0.89
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (27 bp):
TACTGTTACTGGTGACTATGCCAAATT
Found at i:62297995 original size:43 final size:43
Alignment explanation
Indices: 62297943--62298063 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
62297933 CAAGATGTGT
* * *
62297943 TTACATGTAATACCATGTCTGGAACATTGGCATTG-T-ATTGAGA
1 TTACGTGTAAGACCATGTCTGGAACATTGGCATCGTTAATT--GA
62297986 TTACGTGTAAGACCATGTCTGGAACATTGGCATCGTTAATTGA
1 TTACGTGTAAGACCATGTCTGGAACATTGGCATCGTTAATTGA
* * *
62298029 TTTCGTGTAAGACCCTGTCTGGAACAATGGCATCG
1 TTACGTGTAAGACCATGTCTGGAACATTGGCATCG
62298064 ATATGTGATA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
43 66 0.94
44 1 0.01
45 3 0.04
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGAACATTGGCATCGTTAATTGA
Found at i:62298082 original size:43 final size:43
Alignment explanation
Indices: 62297949--62298087 Score: 113
Period size: 43 Copynumber: 3.2 Consensus size: 43
62297939 GTGTTTACAT
* * * * **
62297949 GTAATACCATGTCTGGAACATTGGCATTG-T-ATTGAGATTACGT
1 GTAAGACCATGTCTGGAACAATGGCATCGATAATT--GATAACAA
* * ** **
62297992 GTAAGACCATGTCTGGAACATTGGCATCGTTAATTGATTTCGT
1 GTAAGACCATGTCTGGAACAATGGCATCGATAATTGATAACAA
*
62298035 GTAAGACCCTGTCTGGAACAATGGCATCGAT-ATGTGATAACAA
1 GTAAGACCATGTCTGGAACAATGGCATCGATAAT-TGATAACAA
62298078 GTAAGACCAT
1 GTAAGACCAT
62298088 ATCTAGGATA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 2 0.02
43 76 0.93
44 1 0.01
45 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (43 bp):
GTAAGACCATGTCTGGAACAATGGCATCGATAATTGATAACAA
Found at i:62308977 original size:15 final size:17
Alignment explanation
Indices: 62308957--62308989 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
62308947 CAAACCCTAG
62308957 CTTTCTT-TTTAT-TTT
1 CTTTCTTGTTTATGTTT
62308972 CTTTCTTGTTTATGTTT
1 CTTTCTTGTTTATGTTT
62308989 C
1 C
62308990 AGCTATGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.73
Consensus pattern (17 bp):
CTTTCTTGTTTATGTTT
Found at i:62309056 original size:16 final size:16
Alignment explanation
Indices: 62309023--62309073 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
62309013 ACTTAGTTTA
62309023 ATTATCATATATTA--T
1 ATTAT-ATATATTACTT
62309038 ATTATATATATTACTT
1 ATTATATATATTACTT
*
62309054 ATTAT-TATTTTACCTT
1 ATTATATATATTA-CTT
62309070 ATTA
1 ATTA
62309074 ACCTTAGTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 8 0.25
15 11 0.34
16 13 0.41
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATATATATTACTT
Found at i:62314018 original size:20 final size:20
Alignment explanation
Indices: 62313993--62314042 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
62313983 TGTGGACTCA
*
62313993 CACGCCCGTGTATCTTGGGG
1 CACGCCCATGTATCTTGGGG
62314013 CACGCCCATGTATCTTGGGG
1 CACGCCCATGTATCTTGGGG
62314033 CACGCCCATG
1 CACGCCCATG
62314043 CCCTTCAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.14, C:0.34, G:0.30, T:0.22
Consensus pattern (20 bp):
CACGCCCATGTATCTTGGGG
Found at i:62325177 original size:43 final size:43
Alignment explanation
Indices: 62325128--62325225 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
62325118 CATCTCAATA
* * *
62325128 ATGTAAGACCATGTCTAGGACATTGGCATTG-TATTGAGATTAC
1 ATGTAAGACCATGTCTAGGACAGTGGCATCGATA-TGAGATAAC
* * *
62325171 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGTGATAAC
1 ATGTAAGACCATGTCTAGGACAGTGGCATCGATATGAGATAAC
62325214 ATGTAAGACCAT
1 ATGTAAGACCAT
62325226 ATCCGGGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 45 0.96
44 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (43 bp):
ATGTAAGACCATGTCTAGGACAGTGGCATCGATATGAGATAAC
Found at i:62331853 original size:56 final size:56
Alignment explanation
Indices: 62331767--62331977 Score: 277
Period size: 56 Copynumber: 3.8 Consensus size: 56
62331757 ACATTTTTGA
* * * *
62331767 GTTGGCATTGATATGTGATTCCGATATGTGTGTACGAGTAAGACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCTGATATGTGTGTACGAGTAAGACCACATTTAATAC
* *
62331823 GTTGGCATCAATATGTGATTCTGATGTGTGTGT--GAGTAAGACCACATTTAATAC
1 GTTGGCATCGATATGTGATTCTGATATGTGTGTACGAGTAAGACCACATTTAATAC
* * *
62331877 ATTGGCATCGATATGTGATTCCT-ATATGTGTGTGCGAGTAAGATCACATTTAATAC
1 GTTGGCATCGATATGTGATT-CTGATATGTGTGTACGAGTAAGACCACATTTAATAC
* *
62331933 GTTGGCATCGATATGTGATT-TCGATATGTGTTTATGAGTAAGACC
1 GTTGGCATCGATATGTGATTCT-GATATGTGTGTACGAGTAAGACC
62331978 CTGTCTGGGA
Statistics
Matches: 135, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
54 47 0.35
55 2 0.01
56 86 0.64
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCTGATATGTGTGTACGAGTAAGACCACATTTAATAC
Found at i:62331963 original size:110 final size:111
Alignment explanation
Indices: 62331768--62331977 Score: 307
Period size: 110 Copynumber: 1.9 Consensus size: 111
62331758 CATTTTTGAG
* * *
62331768 TTGGCATTGATATGTGATTCCGATATGTGTGTACGAGTAAGACCACGTTTAATATGTTGGCATCA
1 TTGGCATCGATATGTGATTCCGATATGTGTGTACGAGTAAGACCACATTTAATACGTTGGCATCA
* *
62331833 ATATGTGATTCTGATGTGTG-TGTGAGTAAGACCACATTTAATACA
66 ATATGTGATTCTGATATGTGTTATGAGTAAGACCACATTTAATACA
* * * *
62331878 TTGGCATCGATATGTGATTCCTATATGTGTGTGCGAGTAAGATCACATTTAATACGTTGGCATCG
1 TTGGCATCGATATGTGATTCCGATATGTGTGTACGAGTAAGACCACATTTAATACGTTGGCATCA
62331943 ATATGTGATT-TCGATATGTGTTTATGAGTAAGACC
66 ATATGTGATTCT-GATATGTG-TTATGAGTAAGACC
62331978 CTGTCTGGGA
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
109 1 0.01
110 75 0.85
112 12 0.14
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (111 bp):
TTGGCATCGATATGTGATTCCGATATGTGTGTACGAGTAAGACCACATTTAATACGTTGGCATCA
ATATGTGATTCTGATATGTGTTATGAGTAAGACCACATTTAATACA
Found at i:62335963 original size:27 final size:27
Alignment explanation
Indices: 62335922--62335975 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
62335912 TGTCATGTGA
* *
62335922 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
62335949 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
62335976 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:62336350 original size:50 final size:51
Alignment explanation
Indices: 62336229--62336370 Score: 196
Period size: 50 Copynumber: 2.8 Consensus size: 51
62336219 TGAGGTCGCA
* * *
62336229 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACG
* * * *
62336280 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAGCAGATGA-TTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACG
* *
62336330 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATAAC
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAC
62336371 CTTGTCTACA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
50 43 0.55
51 35 0.45
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACG
Found at i:62338755 original size:46 final size:47
Alignment explanation
Indices: 62338649--62338770 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
62338639 TGTCTTCGAC
** * *
62338649 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
62338699 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
62338745 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
62338771 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Done.