Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 195 of 290
Found at i:62675665 original size:2 final size:2
Alignment explanation
Indices: 62675651--62676070 Score: 110
Period size: 2 Copynumber: 237.5 Consensus size: 2
62675641 ATAATAATTA
* * *
62675651 AT AT AT -T AA AT AT AT AT AT AT AT AA AT AA AT A- AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
62675690 AT -T A- AT A- AT AT AT AT -T AA AT AT -T AT A- AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
62675725 AT AA AT A- AT A- AT AA AT AC AT A- AT AT TT AT -T AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
62675762 -T AT AT AT AT AA AA AT -T AT -T A- AT AT AT AT AT AT AT -T AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
62675799 AA AT AT AT AT AT AT TT A- AT AT TT AT A- ACT AT A- AT A- AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* * * * * *
62675837 AT AT AT TT TT A- AT -T AA AA AT A- AT AA AT TT A- AT A- AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
62675873 AT AT A- AA AT AT AT AT -T A- AT AT AT AT AT A- AT A- AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
62675909 AT A- AT -T AT AA AA AT AT AT AT AT AT A- AT AA AA AT AT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
62675948 -T AT AT AT AT -T AT A- AT AT A- AT A- AT AT AA AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
62675985 TT A- AT -T AT AT A- AT AT AA AT -T AT TT ACT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* *
62676023 AT AA AT -T AC AT A- AGT AT AT A- AT AT AT A- AT A- AT A- AT AT
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT
62676060 AT -T AT -T AT AT A
1 AT AT AT AT AT AT A
62676071 AGTTATTAAT
Statistics
Matches: 306, Mismatches: 51, Indels: 122
0.64 0.11 0.25
Matches are distributed among these distances:
1 58 0.19
2 244 0.80
3 4 0.01
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:62675868 original size:85 final size:83
Alignment explanation
Indices: 62675640--62676071 Score: 220
Period size: 87 Copynumber: 5.1 Consensus size: 83
62675630 TAATAAACTT
* *
62675640 TATAATAATTA-AT-A-TATTAAATATATATATATATAAATAAATAATTATATATTAATAATATA
1 TATAATAATTATATAACTA-TAAAAATATATATATAT-AATAAA-AA-TATAAATTAAT-ATATA
* *
62675702 TATTAAATATTATAATATTATATATAAA
61 TA-T--ATATTA-AA-AATATATATATA
* * ** *
62675730 TAATAATAAATACATAA-TAT-TTATTATATAATTATATATATAAAAAT-T--ATTAATATATAT
1 T-ATAATAATTATATAACTATAAAAATATAT-A-TATATA-ATAAAAATATAAATTAATATATAT
62675790 ATATATTAAAAATATATATATA
62 ATATATTAAAAATATATATATA
* * * *
62675812 TTTAAT-ATT-TATAACTATAATAATTATATATTTTTAATTAAAAATAATAAATTTAATA-ATA-
1 TATAATAATTATATAACTATAA-AAATATATATATATAA-TAAAAAT-ATAAA-TTAATATATAT
62675873 ATATA--AAATATATATTAATATATA
62 ATATATTAAA-A-ATA-T-ATATATA
*
62675897 TATAATAATTATATAATTATAAAAATATATATATATAATAAAAATATAAATT-ATATATAT-TAT
1 TATAATAATTATATAACTATAAAAATATATATATATAATAAAAATATAAATTAATATATATATAT
* *
62675960 AATATAATAATATAAATATA
66 -AT-TAAAAATATATATATA
** * * * *
62675980 TATTTTTAATTATATAA-TATAAATTATTTACTAATATATATATATAAAT-TACA-TAAGTATAT
1 TA-TAATAATTATATAACTATAAA-AATATA-T-ATATATA-ATAAAAATATAAATTAA-TATAT
* *
62676042 AATATATAATAATAATATAT-TATTA
60 -ATATATATTAAAAATATATATA-TA
62676067 TATAA
1 TATAA
62676072 GTTATTAATA
Statistics
Matches: 274, Mismatches: 31, Indels: 78
0.72 0.08 0.20
Matches are distributed among these distances:
79 5 0.02
80 16 0.06
81 8 0.03
82 23 0.08
83 32 0.12
84 34 0.12
85 30 0.11
86 32 0.12
87 45 0.16
88 9 0.03
89 3 0.01
90 2 0.01
91 15 0.05
92 7 0.03
93 13 0.05
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (83 bp):
TATAATAATTATATAACTATAAAAATATATATATATAATAAAAATATAAATTAATATATATATAT
ATTAAAAATATATATATA
Found at i:62675891 original size:42 final size:43
Alignment explanation
Indices: 62675845--62675973 Score: 124
Period size: 42 Copynumber: 3.0 Consensus size: 43
62675835 TTATATATTT
62675845 TTAATTAAAAATAATAAATTTA-ATAATAATATAAAATATATA
1 TTAATTAAAAATAATAAATTTATATAATAATATAAAATATATA
* * *
62675887 TTAATATATATATAAT-AA-TTATATAATTATA-AAAATATATA
1 TTAAT-TAAAAATAATAAATTTATATAATAATATAAAATATATA
*
62675928 TATATAATAAAAAT-ATAAATTATATATATTATAATATAATAATATA
1 T-TA-ATTAAAAATAATAAATT-TATATA--ATAATATAA-AATATA
62675974 AATATATATT
Statistics
Matches: 69, Mismatches: 7, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
41 16 0.23
42 24 0.35
43 10 0.14
44 6 0.09
46 5 0.07
47 2 0.03
48 6 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (43 bp):
TTAATTAAAAATAATAAATTTATATAATAATATAAAATATATA
Found at i:62676083 original size:81 final size:81
Alignment explanation
Indices: 62675884--62676088 Score: 190
Period size: 81 Copynumber: 2.5 Consensus size: 81
62675874 TATAAAATAT
* * * * * *
62675884 ATATTAATATATATATAATAATTATATAATTATAAAAATATATA-TATATAATAAAAATATAAAT
1 ATATAAATATATAT-TTATAATTATATAA-TAT-AAATTATTTACTA-AT-ATATATATATAAAT
*
62675948 TATATATATTATAATATAATA
61 TACATATATTATAATATAATA
*
62675969 ATATAAATATATATTTTTAATTATATAATATAAATTATTTACTAATATATATATATAAATTACAT
1 ATATAAATATATATTTATAATTATATAATATAAATTATTTACTAATATATATATATAAATTACAT
62676034 A-AGTATATAATAT-ATA
66 ATA-T-TATAATATAATA
62676050 ATA-ATAATATATTATTATATAAGTTAT-T-A-ATAAATTATT
1 ATATA-AATATA-TATT-TATAA-TTATATAATATAAATTATT
62676089 AATTAAAAAT
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
80 2 0.02
81 40 0.38
82 23 0.22
83 10 0.10
84 16 0.15
85 13 0.12
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (81 bp):
ATATAAATATATATTTATAATTATATAATATAAATTATTTACTAATATATATATATAAATTACAT
ATATTATAATATAATA
Found at i:62676181 original size:24 final size:23
Alignment explanation
Indices: 62676100--62676244 Score: 94
Period size: 22 Copynumber: 6.4 Consensus size: 23
62676090 ATTAAAAATT
*
62676100 TATATTATTA-ATATTATTTTT-
1 TATATTATTATATAATATTTTTA
* *
62676121 T-TA-TATTTTATAAT-TTATTA
1 TATATTATTATATAATATTTTTA
* * *
62676141 -ATAATAATTAAATTATA-TTTTA
1 TAT-ATTATTATATAATATTTTTA
62676163 T-TATTATTTATATAATATATTTTTA
1 TATATTA-TTATAT-A-ATATTTTTA
62676188 TATATTATTA-ATAATATTTATTA
1 TATATTATTATATAATATTT-TTA
*
62676211 TAATATTATTATATAATATTTATA
1 T-ATATTATTATATAATATTTTTA
62676235 T-TATATATTA
1 TATAT-TATTA
62676245 AATTAAATAA
Statistics
Matches: 96, Mismatches: 12, Indels: 30
0.70 0.09 0.22
Matches are distributed among these distances:
19 8 0.08
20 7 0.07
21 5 0.05
22 26 0.27
23 10 0.10
24 17 0.18
25 18 0.19
26 5 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TATATTATTATATAATATTTTTA
Found at i:62676222 original size:66 final size:66
Alignment explanation
Indices: 62676099--62676244 Score: 156
Period size: 66 Copynumber: 2.1 Consensus size: 66
62676089 AATTAAAAAT
*
62676099 TTATATTATTAATATTATTTTTTTATATTTTATAATTTATTAATAATAATTAAATTATATTTTAT
1 TTATATTATTAATATTATTTTTATATATTTTATAATTTATTAATAATAATT-AATTATATTTTAT
62676164 TA
65 TA
*
62676166 TTAT-TTATATAATA-TATTTTTATATATTATTAATAATATTTATT-ATAATATTATTATATAAT
1 TTATATTAT-TAATATTATTTTTATATATT-TT-AT-A-ATTTATTAATAATA--ATTA-ATTAT
62676228 ATTTATATTA
58 ATTT-TATTA
62676238 -TATATTA
1 TTATATTA
62676245 AATTAAATAA
Statistics
Matches: 67, Mismatches: 2, Indels: 15
0.80 0.02 0.18
Matches are distributed among these distances:
66 17 0.25
67 11 0.16
68 2 0.03
69 7 0.10
70 8 0.12
71 14 0.21
72 8 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (66 bp):
TTATATTATTAATATTATTTTTATATATTTTATAATTTATTAATAATAATTAATTATATTTTATT
A
Found at i:62676258 original size:31 final size:30
Alignment explanation
Indices: 62676196--62676498 Score: 105
Period size: 29 Copynumber: 10.0 Consensus size: 30
62676186 TATATATTAT
* * *
62676196 TAATAATATTTATTATA-AT-ATTATTATA
1 TAATAATAATTATTATATATAATAATTAAA
* * *
62676224 TAATATTTA-TATTATATATTA-AATTAAA
1 TAATAATAATTATTATATATAATAATTAAA
62676252 TAATAATAATTATTATATATAATAATTAAA
1 TAATAATAATTATTATATATAATAATTAAA
* ** * **
62676282 TATCTTTTAATTAATATAT-TAAT-ATCCAA
1 TA-ATAATAATTATTATATATAATAATTAAA
* *
62676311 TAAT-ATAAATATAAT-TAATAAT-ATTATAA
1 TAATAATAATTATTATAT-ATAATAATTA-AA
* * *
62676340 TAATAATAAATATAAATATATAATATTATTATA
1 TAATAATAATTAT-TATATATAATA--ATTAAA
* * *
62676373 TATATAATATTTTAATAAATATAAT-ATATAAA
1 TA-ATAATA-ATTATTATATATAATAAT-TAAA
* * * *
62676405 AAATAAAAATT-TTATAATTTAATTATATTATA
1 TAATAATAATTATTAT-ATATAA-TA-ATTAAA
* *
62676437 T-ATAA-ATTTAGTTAAATATATAATATTATAAA
1 TAATAATAATTA-TT--ATATATAATAAT-TAAA
*
62676469 TTATAATAA--ATTATATATAATAATATAAA
1 TAATAATAATTATTATATATAATAAT-TAAA
62676498 T
1 T
62676499 TTAATTAATT
Statistics
Matches: 205, Mismatches: 42, Indels: 55
0.68 0.14 0.18
Matches are distributed among these distances:
26 1 0.00
27 14 0.07
28 27 0.13
29 43 0.21
30 31 0.15
31 35 0.17
32 17 0.08
33 14 0.07
34 21 0.10
35 2 0.01
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
TAATAATAATTATTATATATAATAATTAAA
Found at i:62676333 original size:21 final size:21
Alignment explanation
Indices: 62676309--62676382 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
62676299 ATTAATATCC
62676309 AATAATATAAATATAATTAAT
1 AATAATATAAATATAATTAAT
* *
62676330 AATATTAT-AATAATAATAAAT
1 AATAATATAAAT-ATAATTAAT
*
62676351 -ATAAATATATAATATTATTATAT
1 AAT-AATATA-AATATAATTA-AT
62676374 ATATAATAT
1 A-ATAATAT
62676383 TTTAATAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
20 5 0.12
21 19 0.46
22 5 0.12
23 5 0.12
24 5 0.12
25 2 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATAATATAAATATAATTAAT
Found at i:62676420 original size:48 final size:48
Alignment explanation
Indices: 62676328--62676420 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
62676318 AATATAATTA
* *
62676328 ATAATATTATAATAATAATAAATATAAATATATAATATTATTATATAT
1 ATAATATTATAATAATAATAAATATAAAAATATAAAATTATTATATAT
*
62676376 ATAATATTTTAATAA-ATATAATATATAAAAA-ATAAAAATT-TTATA
1 ATAATATTATAATAATA-ATAA-ATATAAAAATAT-AAAATTATTATA
62676421 ATTTAATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
47 1 0.03
48 25 0.64
49 13 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (48 bp):
ATAATATTATAATAATAATAAATATAAAAATATAAAATTATTATATAT
Found at i:62676536 original size:80 final size:79
Alignment explanation
Indices: 62676366--62676891 Score: 200
Period size: 80 Copynumber: 6.4 Consensus size: 79
62676356 TATATAATAT
* * * *
62676366 TATTATATATATAATATT-TTAATA-AATATAA-TATATA-AAAAATAAAAATTTTA-TAATTTA
1 TATT-TATATATAATATTATAAATATAATA-AATTATATATAATAATATAAATTTAATTAATTT-
** *
62676426 ATTATATTATATATAAATT
63 ATTA-ATTATAT-TTTATA
*
62676445 TAGTTAAATATATAATATTATAAATTATAATAAATTATATATAATAATATAAATTTAATTAATTT
1 TA-TT-TATATATAATATTATAAA-TATAATAAATTATATATAATAATATAAATTTAATTAATTT
62676510 ATTAATTATATTTTATA
63 ATTAATTATATTTTATA
* * **
62676527 TATTTATATATAATA-TATTAAATA-ATTAATATTA-ATAATAAAAATTATAAATAAAATAATAA
1 TATTTATATATAATATTA-TAAATATAATAA-ATTATAT-ATAATAA-TATAAATTTAAT--TAA
*
62676589 ATTATTAAATAAATATATTTTATA
60 TTTATT-AAT---TATATTTTATA
* *
62676613 -ATTTATA-ATATATATTATATAAT-TAATAAA--ATATAAAATAATATATATATTAA--AATAT
1 TATTTATATATA-ATATTATA-AATATAATAAATTATATATAATAATATAAAT-TTAATTAAT-T
* * * *
62676671 TATAAATAAAATATTAATA
62 TATTAATTATAT-TTTATA
* * *
62676690 TTATTTA-ATA-ATATATTATATAATTTAAATTAAATT-TATATAA-ATTTATATATTTATAATT
1 -TATTTATATATA-ATATTATA-AATAT-AA-TAAATTATATATAATA-ATATA-AATT-TAATT
* *
62676751 AA-TTATTAATAAATATAATTAATCAAA
58 AATTTATTAAT---TAT-ATT--TTATA
* * * * * * *
62676778 TATAATATTTATAATATTATAAATA-AATATATAATATATATATAATATTAATTTAATTTATATA
1 TAT-TTATATATAATATTATAAATATAATAAATTATATATA-ATAATATAAATTTAATTAATTTA
* *
62676842 TTAATAATATTATATA
64 TTAATTATATTTTATA
*
62676858 TATATTAT-TATAA-ATTAAATAAATAT-TTAAATTA
1 TAT-TTATATATAATATT--ATAAATATAATAAATTA
62676892 ATTTAAATAT
Statistics
Matches: 341, Mismatches: 52, Indels: 107
0.68 0.10 0.21
Matches are distributed among these distances:
76 3 0.01
77 5 0.01
78 24 0.07
79 33 0.10
80 66 0.19
81 10 0.03
82 37 0.11
83 41 0.12
84 22 0.06
85 31 0.09
86 40 0.12
87 9 0.03
88 9 0.03
89 10 0.03
90 1 0.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.46
Consensus pattern (79 bp):
TATTTATATATAATATTATAAATATAATAAATTATATATAATAATATAAATTTAATTAATTTATT
AATTATATTTTATA
Found at i:62676547 original size:41 final size:41
Alignment explanation
Indices: 62676451--62676825 Score: 143
Period size: 41 Copynumber: 9.3 Consensus size: 41
62676441 AATTTAGTTA
62676451 AATATATAATAT-TATAAATTA-TAA-TAAATTATATATAAT
1 AATATATAATATAT-TAAATTATTAATTAAATTATATATAAT
* * * * *
62676490 AATATA-AATTTAATTAATTTATTAATTATATTTTATATATT
1 AATATATAATAT-ATTAAATTATTAATTAAATTATATATAAT
* * * * *
62676531 TATATATAATATATTAAATAATTAATATTAATAATA-AAAAT
1 AATATATAATATATTAAATTATTAAT-TAAATTATATATAAT
* * * * * * *
62676572 TATAAATAAAATAATAAATTATTAAATAAA-TATATTTTAT
1 AATATATAATATATTAAATTATTAATTAAATTATATATAAT
* * *
62676612 AATTTATAATATA-T--ATTATATAATT-AATAAAATATAA-
1 AATATATAATATATTAAATTAT-TAATTAAATTATATATAAT
* * *
62676649 AATA-ATATATATATTAAAATATT-A-TAAATAAAATATTAAT
1 AATATATA-ATATATTAAATTATTAATTAAATTATATA-TAAT
* * *
62676689 ATTATTTAATAATATATTATATAATTTAAATTAAATT-TATATAA-
1 A--ATAT-ATAATATATTAAATTA-TT-AATTAAATTATATATAAT
* *
62676733 ATTTATATATTTATAATT-AATTATTAA-TAAA-TATA-ATTAAT
1 A-ATATATA-ATAT-ATTAAATTATTAATTAAATTATATA-TAAT
*
62676774 CAA-ATATAATAT-TTATAA-TATT-A-TAAATAAATATATAAT
1 -AATATATAATATATTA-AATTATTAATTAAAT-TATATATAAT
62676813 ATATATATAATAT
1 A-ATATATAATAT
62676826 TAATTTAATT
Statistics
Matches: 249, Mismatches: 50, Indels: 73
0.67 0.13 0.20
Matches are distributed among these distances:
36 3 0.01
37 23 0.09
38 29 0.12
39 35 0.14
40 47 0.19
41 55 0.22
42 17 0.07
43 19 0.08
44 9 0.04
45 3 0.01
46 4 0.02
47 5 0.02
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (41 bp):
AATATATAATATATTAAATTATTAATTAAATTATATATAAT
Found at i:62676584 original size:21 final size:20
Alignment explanation
Indices: 62676563--62676601 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
62676553 TAATATTAAT
62676563 AATAA-AAATTA-TAAATAA
1 AATAATAAATTATTAAATAA
62676581 AATAATAAATTATTAAATAA
1 AATAATAAATTATTAAATAA
62676601 A
1 A
62676602 TATATTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 6 0.32
20 8 0.42
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AATAATAAATTATTAAATAA
Found at i:62676627 original size:21 final size:20
Alignment explanation
Indices: 62676596--62676883 Score: 99
Period size: 20 Copynumber: 14.4 Consensus size: 20
62676586 TAAATTATTA
*
62676596 AATAAATATATTTTATAATT
1 AATAAATATATTATATAATT
*
62676616 TATAATATATATTATATAATT
1 AATAA-ATATATTATATAATT
62676637 AATAAA-ATA-TA-A-AA-T
1 AATAAATATATTATATAATT
* * *
62676652 AATATATATATTAAAATATTATA
1 AATAAATATATT---ATATAATT
*
62676675 AATAAA-ATATTAATATTATTT
1 AATAAATATATT-ATA-TAATT
62676696 AAT-AATATATTATATAATT
1 AATAAATATATTATATAATT
* *
62676715 --TAAATTAAATT-TAT-ATA
1 AATAAA-TATATTATATAATT
**
62676732 AATTTATATATT-TATAATT
1 AATAAATATATTATATAATT
* * *
62676751 AATTATTA-ATAAATATAATT
1 AATAAATATAT-TATATAATT
*
62676771 AATCAAATATAATATTTATAATAT
1 AAT-AAATAT-AT-TATATAAT-T
* *
62676795 TATAAATA-AATATATAA-T
1 AATAAATATATTATATAATT
* *
62676813 -ATATATATAATAT-TAATTT
1 AATAAATATATTATATAA-TT
**
62676832 AATTTATATATTA-ATAATAT
1 AATAAATATATTATATAAT-T
* *
62676852 TATATATATATTATTATAAATT
1 AATAAATATATTA-TAT-AATT
62676874 AAATAAATAT
1 -AATAAATAT
62676884 TTAAATTAAT
Statistics
Matches: 202, Mismatches: 34, Indels: 61
0.68 0.11 0.21
Matches are distributed among these distances:
15 6 0.03
16 5 0.02
17 14 0.07
18 23 0.11
19 24 0.12
20 56 0.28
21 33 0.16
22 9 0.04
23 29 0.14
24 3 0.01
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATAAATATATTATATAATT
Found at i:62676648 original size:35 final size:35
Alignment explanation
Indices: 62676609--62676741 Score: 89
Period size: 38 Copynumber: 3.7 Consensus size: 35
62676599 AAATATATTT
62676609 TATAATTTATAATATATATTATATAATTAATAAAA
1 TATAATTTATAATATATATTATATAATTAATAAAA
** * *
62676644 TATAAAATA-ATATATATATTAAAATATTATAAATAAAA
1 TATAATTTATA-ATATATATT---ATATAATTAATAAAA
*
62676682 TATTAATATTATTTAATAATATATTATATAATT--TAAAT
1 TA-TAAT-TTA--TAAT-ATATATTATATAATTAATAAAA
*
62676720 TA-AATTTAT-ATAAAT-TTATATA
1 TATAATTTATAATATATATTATATA
62676742 TTTATAATTA
Statistics
Matches: 78, Mismatches: 10, Indels: 25
0.69 0.09 0.22
Matches are distributed among these distances:
30 7 0.09
31 3 0.04
32 2 0.03
33 1 0.01
34 1 0.01
35 19 0.24
36 3 0.04
38 21 0.27
39 3 0.04
40 8 0.10
42 2 0.03
43 8 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (35 bp):
TATAATTTATAATATATATTATATAATTAATAAAA
Found at i:62676902 original size:59 final size:59
Alignment explanation
Indices: 62676610--62677041 Score: 165
Period size: 59 Copynumber: 7.2 Consensus size: 59
62676600 AATATATTTT
* * * *
62676610 ATAAT-TTAT-AATAT-ATATTATATAATT-AATAAA-ATATAAAATAATATATATATTA
1 ATAATATTATAAATATAATATTATA-AATTAAATAAATATTTAAATTAATTTAAATATTA
* * * *
62676665 A-AATATTATAAATAAAATATTAATATTATTTAATAATATATTATATAATTTAAATTAAAT-TTA
1 ATAATATTATAAATATAATATT-ATA-AATTAAATAA-ATATT-TA-AA-TTAATTTAAATATTA
* * * * * * *
62676728 TATAA-ATT-TATATAT-TTATAATTAATTATTAATAAATATAATT-AATCAA-ATATAATATTT
1 -ATAATATTATAAATATAATATTATAAATTA--AATAAATAT--TTAAATTAATTTA-AATATTA
* * *
62676788 ATAATATTATAAATA-AATA-TAT-AATATATATATAATA-TTAATTTAATTTATATATTA
1 ATAATATTATAAATATAATATTATAAAT-TAAATA-AATATTTAAATTAATTTAAATATTA
* *
62676845 ATAATATTATATATATATTATTATAAATTAAATAAATATTTAAATTAATTTAAATATTA
1 ATAATATTATAAATATAATATTATAAATTAAATAAATATTTAAATTAATTTAAATATTA
* * * **
62676904 TTTAATAATATAAATTAAAATTTATTAATAAAATT-AATATAATAAATAAATT-ATATTAAATA-
1 -ATAATATTATAAA-TATAA--TATT-AT-AAATTAAATA-AATATTTAAATTAAT-TTAAATAT
62676966 T-
58 TA
* * * * *
62676967 ATAA-ATTTTTAATAT-ATATTATAAAATAATATTTAAATAATTAAATTTATGAATTAAA-A-TA
1 ATAATATTATAAATATAATATTATAAATTAA-A--TAAATATTTAAA-TTA--ATTTAAATATTA
62677028 ATAATATTATAAAT
1 ATAATATTATAAAT
62677042 TTATTATAAT
Statistics
Matches: 282, Mismatches: 48, Indels: 87
0.68 0.12 0.21
Matches are distributed among these distances:
54 3 0.01
55 9 0.03
56 9 0.03
57 33 0.12
58 30 0.11
59 53 0.19
60 32 0.11
61 32 0.11
62 22 0.08
63 15 0.05
64 20 0.07
65 24 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (59 bp):
ATAATATTATAAATATAATATTATAAATTAAATAAATATTTAAATTAATTTAAATATTA
Found at i:62677088 original size:117 final size:115
Alignment explanation
Indices: 62676838--62677138 Score: 262
Period size: 117 Copynumber: 2.6 Consensus size: 115
62676828 ATTTAATTTA
* * * *
62676838 TATATTAATAATATTATATATATATTATTATA-AATTAAATAAATATTTAAATTAATTTAAATAT
1 TATATT-A-AATA-TATAAATATATAATTATATTATAAAATAAATATTTAAATTAATTTAAATAT
62676902 TATTTAATAATATAAATTAAAATTTATTAATAAAATTAATATAATAAATAAAT
63 TATTTAATAATATAAATTAAAATTTATTAATAAAATTAATATAATAAATAAAT
* *
62676955 TATATTAAATATATAAATTTTTAATATATATTATAAAAT-AATATTTAAA-TAA-TTAAAT-TTA
1 TATATTAAATATATAAATATATAAT-TATATTATAAAATAAATATTTAAATTAATTTAAATATTA
* * * *
62677016 TGAATTAA-AATAATAATATTATAAATTTATT-ATAATAATTATTATAAT-TATTATT
65 T---TTAATAAT-ATAA-ATTA-AAATTTATTAATAA-AATTAATATAATAAATAAAT
* * * * *
62677071 TA-ATATAATATATATAAATATATAATTATATTA-ATATTATATATTTATATTATTATTAAATAT
1 TATAT-TAA-ATATATAAATATATAATTATATTATAAAATAAATATTTAAATTAAT-TTAAATAT
*
62677134 AATTT
63 TATTT
62677139 TAAAATAATA
Statistics
Matches: 150, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
112 4 0.03
113 6 0.04
114 16 0.11
115 31 0.21
116 39 0.26
117 45 0.30
119 6 0.04
120 3 0.02
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (115 bp):
TATATTAAATATATAAATATATAATTATATTATAAAATAAATATTTAAATTAATTTAAATATTAT
TTAATAATATAAATTAAAATTTATTAATAAAATTAATATAATAAATAAAT
Found at i:62677167 original size:42 final size:43
Alignment explanation
Indices: 62676643--62678715 Score: 142
Period size: 40 Copynumber: 47.7 Consensus size: 43
62676633 AATTAATAAA
*
62676643 ATATAAAATAATATATATATTA-AA-ATATTATAAATA-AAATATT
1 ATAT-AAATAATATATAT-TTATAATATATTATAAATATATA-ATT
**
62676686 AATATTATTTAATA-ATATATTAT-ATA-ATT-TAAAT-TA-AATTT
1 -ATA-TAAATAATATATAT-TTATAATATATTATAAATATATAA-TT
* *
62676727 ATATAAAT-TTATATATTTATAAT-TAATTATTAATAAATATAATT
1 ATATAAATAATATATATTTATAATAT-ATTA-TAA-ATATATAATT
*
62676771 A-ATCAAAT-ATA-ATATTTATAATATTATAAATAAATATATAA-T
1 ATAT-AAATAATATATATTTATAATA-TAT-TATAAATATATAATT
* * * *
62676813 ATATATATAATAT-TAATT-TAATTTATATATTAATA-AT-ATT
1 ATATAAATAATATATATTTATAATATAT-TATAAATATATAATT
* *
62676853 ATAT--AT-ATAT-TA-TTATAA-AT-TAAATAAATATTTAAATT
1 ATATAAATAATATATATTTATAATATAT-TATAAATATAT-AATT
* * * *
62676891 AATTTAAAT-AT-TAT-TTAATAATATAAATTA-AAATTTATTAATA
1 -ATATAAATAATATATATTTATAATAT--ATTATAAATATA-TAATT
* * * * * * *
62676934 AAATTAATATAATAAATAAATTATATTAAATATATAAATTTTTAATAT
1 ATA-TAA-ATAATATAT-ATTTATAATATAT-TATAAATATATAAT-T
*
62676982 ATATTATAA-AATA-ATATTTA-AATA-A-T-TAAATTTATGAA-T
1 ATA-TA-AATAATATATATTTATAATATATTATAAATATAT-AATT
*
62677021 -TA-AAATAATA-ATA-TTATAA-AT-TTAT-TATA-ATAATT
1 ATATAAATAATATATATTTATAATATATTATAAATATATAATT
* * * *
62677056 ATTATAATTATTATTTA-ATATAATATA-TATAAATATATAATT
1 A-TATAAATAATATATATTTATAATATATTATAAATATATAATT
* * *
62677098 ATATTAATATTATATATTTAT-AT-TATTATTAA-ATATAATT
1 ATATAAATAATATATATTTATAATATATTATAAATATATAATT
* * * *
62677138 TTA-AAATAATATGTATTTAATAATATA-T-T-AATATTTTATT
1 ATATAAATAATATATATTT-ATAATATATTATAAATATATAATT
* * *
62677178 -TATAAATATTA-ATAATTT-TAATATTATTATATTATATTTTTATATT
1 ATATAAATAATATAT-ATTTATAATA-TATTATA--A-ATATATA-ATT
* * *
62677224 ATTTAATTAATATATATATT-TAATAATAATTATAAATTTAATATATTT
1 ATATAAATAATATATAT-TTATAAT-AT-ATTATAAA--T-ATATAATT
* * * *
62677272 AATTAAAAATAATACA-ATATTATATTATAAT-TAAATAATATAATT
1 -A-TATAAATAATATATAT-TTATAATATATTATAAAT-ATATAATT
** * * *
62677317 ATAATATTTAGTATA-ATAATATTAAT-TAATATAAATATAT-ATAT
1 AT-ATAAATAATATATAT-TTA-TAATATATTATAAATATATAAT-T
* * * *
62677361 ATATAAATTAAATATAAAACATTTAAAAAAT-TTAATAAAT-TTTAA-T
1 ATATAAA-T-AATAT---ATATTTATAATATATT-ATAAATATATAATT
* * *
62677407 ATA-AAAT-TTATAATATATATATTA-ATATATAAAT-T-TAATT
1 ATATAAATAATAT-ATATTTATAATATAT-TATAAATATATAATT
* * * *
62677447 ATATATAT-ATATA-ATTT-T-ATAT-TT-TTAATAAATTATT
1 ATATAAATAATATATATTTATAATATATTATAAATATATAATT
* **
62677484 ATATATTATTTTATATGATATTATAATATATT-TAATAATAATATAATTT
1 ATATA-AATAATATAT-AT-TTATAATATATTAT-A-AAT-ATATAA-TT
* *** * * *
62677533 TTATTTTTATATGATAAATTTA-ATTATATTTTAATATATATTATATT
1 ATATAAATA-AT-ATATATTTATAATATATTATAA-ATATA-TA-ATT
* * *
62677580 TTAT-AATAATTATAAATTTATAATATATTAATTAAAAATTAATATATT
1 ATATAAATAA-TATATATTTATAATATATT-A-TAAATA-T-ATA-ATT
* **
62677628 ATATATAATAAT-TAAATAAAT-ATAATATTATAAATAATTATAATT
1 ATATA-AATAATATATATTTATAAT-ATATTATAAAT-A-TATAATT
* * *
62677673 TTATATATAATATAATATTTAT-ATA-A-TATATATATAT-ATT
1 ATATAAATAATAT-ATATTTATAATATATTATAAATATATAATT
* * *
62677713 AT-T-TATTATATATA-TTATTATAATATTA-ATAATAATATAATT
1 ATATAAATAATATATATTTATAAT-ATATTATA-AAT-ATATAATT
* * *
62677755 ATAATATAATAATAAATTATATTATTATATTATAATATAAAAAT-TAATT
1 AT-ATA-AATAAT--A-TATA-T-TTATAATATATTATAAATATATAATT
* * * * *
62677804 ATATATATAATATAATAAATTATAAT-TAATATTAATAAATAATAT
1 ATATAAATAATAT-AT-ATTTATAATATATTATAAATATATAAT-T
* ** * *
62677849 ATATAATTAATTATATAAATATTATTATATTA-AATATTTATATATT
1 ATATAAATAA-TATATATTTA-TAATATATTATAA-ATATATA-ATT
* * * * * *
62677895 AAATTAATTATATATAATAATAA-A-ATT-T-AATATA-AAAT
1 ATATAAATAATATATATTTATAATATATTATAAATATATAATT
* * * *
62677933 ATATAATATAATTTAATTATTAAAATATATAATTTATAAAATAATATAATA
1 ATATAA-ATAATAT-A-TATTTATA-ATAT-A-TTAT-AAAT-ATATAATT
*
62677984 ATATAATATAAT-TA-AATT-TAATATA-TATATAATATTAATAATAT
1 ATATAA-ATAATATATATTTATAATATATTATA-AATA-T-ATAAT-T
* *
62678028 ATATAAATTAATA-ATA--AATAATATTATTATTAATAT-T-ATT
1 ATATAAA-TAATATATATTTATAATA-TATTATAAATATATAATT
* * * * *
62678068 ATAT-TATTATATTAAAATTATTAAT-TATTATTAAAT-TCT-ATT
1 ATATAAATAATA-TATATTTA-TAATATATTA-TAAATATATAATT
* * ** *
62678110 ATATATATAA-AT-TATATTAAAATATAAAATAAAATATTATATTT
1 ATATAAATAATATATAT-TTATAATATATTAT-AAATA-TATAATT
* * * * * *
62678154 ATAATATATTAAATATAATTAAAATTATAATATTAATAAAAAAAAATAATT
1 AT-ATA-AAT-AATAT-A-T--ATTTATAATA-TATTATAAATATATAATT
*
62678205 ATTATAAAT-AT-TATA-TTATTATTATATTAATTAAATA-AT-ATT
1 A-TATAAATAATATATATTTA-TAATATATT-A-TAAATATATAATT
*
62678247 -T-TAAATTAA-AT-TA-TTA-AATATA-TATAAATAT-TATTT
1 ATATAAA-TAATATATATTTATAATATATTATAAATATATAATT
* * * *
62678283 ATATATATAATATATTAATTATATATATAATTATTAATAAATATAATA
1 ATATAAATAATATA-TATTTATA-ATAT-ATTA-TAA-ATATATAATT
* * *
62678331 ATA-AAATTAAT-TATTATATATAATACATAATTATATAT-TCTAATT
1 ATATAAA-TAATATA-TATTTATAAT--AT-ATTATAAATATATAATT
* *
62678376 ATATATAATAA-ATAATTATTTTATAATTAATAATATAAAAATTATAATAT
1 ATATA-AATAATAT-A-TA-TTTATAA-T-ATATTATAAATA-TATAAT-T
* * *
62678426 ATATAATATAAT-TA-ATATA-AATATATAATAATTAT-TAATT
1 ATATAA-ATAATATATATTTATAATATATTATAAATATATAATT
* * *
62678466 GATATAAAGT--TATATA-TT-TAATAAATTATATATTATTATTATT
1 -ATATAAA-TAATATATATTTATAATATATTATA-AATA-TATAATT
** * * * *
62678509 ATATAATATTCTTTATATTAATAATATATATTTAAAATAATATAGTT
1 ATATAA-ATAATATATATTTATAATATAT-TAT-AAAT-ATATAATT
* * *
62678556 ATATATAAT-ATATAAATTATATAATA-AAT-TAATTATATAATAT
1 ATATA-AATAATATATATT-TATAATATATTATAAATATATAAT-T
62678599 ATTATAAAT-ATATATATTTA-AATTATATTATATAATA-A-AA-T
1 A-TATAAATAATATATATTTATAA-TATATTATA-AATATATAATT
* * * *
62678640 ATATATATAA-ATAT-TTTATTTATATAATTATAATTATATACAATA
1 ATATAAATAATATATATTTA-TAATAT-ATTATAA--ATATATAATT
*
62678685 ATTTAATATAATA-ATATTTAATAATAATATT
1 ATATAA-ATAATATATATTT-ATAAT-ATATT
62678716 TAATTTATTT
Statistics
Matches: 1492, Mismatches: 250, Indels: 571
0.65 0.11 0.25
Matches are distributed among these distances:
34 2 0.00
35 28 0.02
36 25 0.02
37 34 0.02
38 56 0.04
39 69 0.05
40 144 0.10
41 129 0.09
42 102 0.07
43 140 0.09
44 131 0.09
45 126 0.08
46 108 0.07
47 133 0.09
48 118 0.08
49 54 0.04
50 39 0.03
51 31 0.02
52 18 0.01
53 5 0.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (43 bp):
ATATAAATAATATATATTTATAATATATTATAAATATATAATT
Found at i:62677449 original size:26 final size:26
Alignment explanation
Indices: 62677402--62677461 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 26
62677392 TTAATAAATT
62677402 TTAATATAAAATTTATAATATATATA
1 TTAATATAAAATTTATAATATATATA
*
62677428 TTAATATATAAATTTAATTATATATATA
1 TTAATATA-AAATTT-ATAATATATATA
62677456 TATAAT
1 T-TAAT
62677462 TTTATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 8 0.27
27 6 0.20
28 12 0.40
29 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TTAATATAAAATTTATAATATATATA
Found at i:62677619 original size:29 final size:31
Alignment explanation
Indices: 62677584--62677944 Score: 105
Period size: 29 Copynumber: 11.8 Consensus size: 31
62677574 TATATTTTAT
*
62677584 AATAATTATAAAT-TTATAATATATTAATTA
1 AATAATTATAAATATTATAATATAATAATTA
*
62677614 AA-AATTA-ATATATTAT-ATATAATAATTA
1 AATAATTATAAATATTATAATATAATAATTA
* * *
62677642 AATAAATAT-AATATTATAAATAATTATAATTT
1 AATAATTATAAATATTAT-AAT-ATAATAATTA
* *
62677674 TATATATAATATAATATT-T-ATATAAT-ATATA
1 AATA-ATTATA-AATATTATAATATAATAAT-TA
* * *
62677705 TATATATTAT--TTATTAT-ATAT-ATTATTA
1 AATA-ATTATAAATATTATAATATAATAATTA
* *
62677733 TAAT-ATTA-ATAATAATATAATTATAAT-ATAA
1 -AATAATTATA-AATATTATAA-TATAATAATTA
* *
62677764 TAATAAATTAT-ATTATTATATTATAAT-A-TA
1 -AAT-AATTATAAATATTATAATATAATAATTA
*
62677794 AA-AATTA-ATTATATATATAATATAATAAATTA
1 AATAATTATA-AATAT-TATAATATAAT-AATTA
* *
62677826 TAATTAA-TATTAATA-AATAATATATATAATT-
1 -AA-TAATTATAAATATTATAATATA-ATAATTA
* * *
62677857 AATTA-TATAAATATTATTATATTAAATATTTA
1 AATAATTATAAATATTATAATA-T-AATAATTA
* * *
62677889 TAT-ATTA-AATTAATTAT-ATATAATAATAA
1 AATAATTATAAAT-ATTATAATATAATAATTA
62677918 AATTTAA-TATAAA-ATATATAATATAAT
1 AA--TAATTATAAATAT-TATAATATAAT
62677945 TTAATTATTA
Statistics
Matches: 248, Mismatches: 38, Indels: 88
0.66 0.10 0.24
Matches are distributed among these distances:
27 9 0.04
28 27 0.11
29 62 0.25
30 16 0.06
31 53 0.21
32 56 0.23
33 11 0.04
34 6 0.02
35 8 0.03
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (31 bp):
AATAATTATAAATATTATAATATAATAATTA
Found at i:62677835 original size:43 final size:43
Alignment explanation
Indices: 62677606--62678045 Score: 156
Period size: 44 Copynumber: 10.3 Consensus size: 43
62677596 TTTATAATAT
62677606 ATTAAT-TAAAAATTAATATATTATATATAATAATTAAATAAA-TATA
1 ATTAATATAAAAATTAAT-TA-TATATATAAT-A-T-AATAAATTATA
* * *
62677652 A-TATTATAAATAATTATAATTTTATATATAATATAAT-ATTTATA
1 ATTAATATAAA-AA-T-TAATTATATATATAATATAATAAATTATA
* * * * * *
62677696 TAATATATATATATATTATTTATTATATATATTATTATAATATTAATA
1 -ATTA-ATATAAAAATTAATTA-TATATATAATATAATAA-ATT-ATA
** * *
62677744 A-TAATATAATTA-TAA-TATA-ATAATAA-ATTATATTATTATA
1 ATTAATATAAAAATTAATTATATAT-ATAATATAATA-AATTATA
*
62677784 TTATAATATAAAAATTAATTATATATATAATATAATAAATTATA
1 AT-TAATATAAAAATTAATTATATATATAATATAATAAATTATA
*
62677828 ATTAATATTAATAAA-TAA-TATATATAATTAAT-TATATAAA-TATT
1 ATTAATA-TAA-AAATTAATTATATAT-A-TAATATA-ATAAATTATA
* *
62677872 ATT-ATAT-TAAA-T-ATT-TATATAT--TA-AATTAATTAT-
1 ATTAATATAAAAATTAATTATATATATAATATAATAAATTATA
* *
62677906 ATATAATAATAAAATTTAA-TATA-AAAT-ATATAATATAATT-TA
1 AT-TAAT-ATAAAAATTAATTATATATATAATATAATA-AATTATA
*
62677948 ATT-AT-TAAAATATATAATT-TATAAAATAATATAAT-AA-TATA
1 ATTAATATAAAA-AT-TAATTATAT-ATATAATATAATAAATTATA
*
62677989 ATATAAT-T-AAATTTAA-TATATATATAATATTAATAATATATATAA
1 AT-TAATATAAAAATTAATTATATATATAATA-TAATAA-AT-TAT-A
62678034 ATTAATAATAAA
1 ATTAAT-ATAAA
62678046 TAATATTATT
Statistics
Matches: 304, Mismatches: 32, Indels: 115
0.67 0.07 0.25
Matches are distributed among these distances:
34 6 0.02
35 6 0.02
36 2 0.01
37 3 0.01
38 8 0.03
39 20 0.07
40 31 0.10
41 25 0.08
42 30 0.10
43 31 0.10
44 50 0.16
45 48 0.16
46 13 0.04
47 22 0.07
48 5 0.02
49 4 0.01
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (43 bp):
ATTAATATAAAAATTAATTATATATATAATATAATAAATTATA
Found at i:62677881 original size:80 final size:80
Alignment explanation
Indices: 62677599--62678649 Score: 271
Period size: 80 Copynumber: 12.7 Consensus size: 80
62677589 TTATAAATTT
** * * *
62677599 ATAATATAT-TAATTAAAAAT-TAATATATTATATATAATAATTAAATAAATATAATATTATAAA
1 ATAATATATATAATTAATTATATAA-ATATTAT-TATATTAATT--ATATATATAATATAATAAA
* * * *
62677662 TAATTA-TAAT-TTTATAT
62 TTATAATTAATATTAATAA
* * * *
62677679 ATAATATA-ATATTTATATAATATATATATATATTAT-TT-ATTATATATATTATTATAATATTA
1 ATAATATATATAATTA-ATTATATAAATAT-TATTATATTAATTATATATA-TAATATAATA--A
*
62677741 ATAATAATATAAT-TATAATATA
61 ATTATAAT-TAATAT-TAATA-A
* * *
62677763 ATAATAAAT-TATATT-ATTATATTATAATA-TA-AAAATTAATTATATATATAATATAATAAAT
1 ATAATATATATA-ATTAATTATA-TA-AATATTATTATATTAATTATATATATAATATAATAAAT
62677824 TATAATTAATATTAATAA
63 TATAATTAATATTAATAA
* * *
62677842 ATAATATATATAATTAATTATATAAATATTATTATATTAAATATTTATATATTA-AATTAATTAT
1 ATAATATATATAATTAATTATATAAATATTATTATATTAATTATATATATAATATAA-TAA--AT
*
62677906 ATATAATAATAAAATTTAATATA
63 -TATAAT--TAATA-TTAATA-A
* * *
62677929 AAATATATAATATAATTTAATTAT-TAAAATATATAATT-TATAAAATA-ATATAATAATATAAT
1 ATA-ATAT-ATATAA-TTAATTATAT-AAATAT-T-ATTATATTAATTATATAT-ATAATATAAT
62677991 ATAATTA-AATTTAATATATATATAA
59 A-AATTATAA-TTAATAT-TA-ATAA
* * *
62678016 TATTAATA-ATATATATAAATTAATAATAAATAATATTATTATTAA-TATTATTATATTATTATA
1 -A-TAATATATATA-ATTAATT-AT-ATAAATATTATTA-TATTAATTA-TA-TATA-TAATATA
* * *
62678079 TTAAA--ATTATTAATTATTATTAA
57 ATAAATTATAATTAA-TATTAATAA
** * ** ** * *
62678102 ATTCTATTATATATATAAATTATATTAAA-ATATAAAATAAAATATTATATTTATAATATATTAA
1 ATAATA-TATATA-ATTAATTATA-TAAATAT-TATTATATTA-ATTATATATATAATATAATAA
*
62678166 A-TATAATTAAAATT-ATAA
61 ATTATAATTAATATTAATAA
* * * * *
62678184 TATTAATAAAAAAAAATAATTATTATAAATATTA-TATTATT-ATTATAT-TA-ATTA-AATAAT
1 -A-TAATATATATAATTAATTA-TATAAATATTATTA-TATTAATTATATATATAATATAATAA-
* *
62678244 ATTTTAAATTAA-ATTATTAA
61 ATTAT-AATTAATATTAATAA
* * *
62678264 AT-ATATATA-AA-T-ATTATTTATATATATAATATATTAATTATATATATAATTATTAATAAA-
1 ATAATATATATAATTAATTATATAAATAT-TATTATATTAATTATATATATAA-TA-TAATAAAT
* *
62678324 TATAA-TAATA-AAATTA
63 TATAATTAATATTAATAA
* * * **
62678340 ATTAT-TATAT-A-TAA-TACATAATTA-TA-TAT-TCTAATTATATATAATAA-ATAATTATTT
1 ATAATATATATAATTAATTATATAAATATTATTATAT-TAATTATATAT-ATAATATAA-TAAAT
*
62678397 TATAATTAATAATATAAAAA
63 TATAATTAAT-AT-TAATAA
*
62678417 TTATAATATATATAATATAATTAATATAAATATATAATAATTATTAATTGATATAAAGTTATATA
1 --ATAATATATATAAT-TAATT-ATATAAATAT-T-ATTA-TATTAATT-ATAT--A--TATA-A
* * * *
62678482 TTTAATAAATTATATATTATTATTATTAT
53 TATAATAAATTATA-ATTAATATTAATAA
* * * * ** * *
62678511 ATAATATTCTTTATATTAATAATATATAT-TTAAAATAATATAGT-TATATATAATAT-ATAAAT
1 ATAATA-TATATA-ATTAATTATATAAATATTATTATATTA-ATTATATATATAATATAATAAAT
* *
62678573 TATATAATAA-ATTAATTAT
63 TATA-ATTAATATTAA-TAA
* * * *
62678592 ATAATATATTATAAATATATATATTTAAAT-TATATTATA-TAATAAAATATAT-ATATAA
1 ATAATATA-TATAATTA-AT-TATATAAATAT-TATTATATTAATTATATATATAATATAA
62678650 ATATTTTATT
Statistics
Matches: 732, Mismatches: 115, Indels: 246
0.67 0.11 0.23
Matches are distributed among these distances:
71 3 0.00
72 4 0.01
73 26 0.04
74 20 0.03
75 11 0.02
76 24 0.03
77 25 0.03
78 21 0.03
79 34 0.05
80 92 0.13
81 55 0.08
82 49 0.07
83 62 0.08
84 43 0.06
85 30 0.04
86 38 0.05
87 27 0.04
88 32 0.04
89 22 0.03
90 37 0.05
91 22 0.03
92 19 0.03
93 9 0.01
94 8 0.01
95 11 0.02
96 8 0.01
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.46
Consensus pattern (80 bp):
ATAATATATATAATTAATTATATAAATATTATTATATTAATTATATATATAATATAATAAATTAT
AATTAATATTAATAA
Found at i:62677961 original size:51 final size:48
Alignment explanation
Indices: 62677906--62678034 Score: 118
Period size: 51 Copynumber: 2.5 Consensus size: 48
62677896 AATTAATTAT
* *
62677906 ATATAATAATA-AAATTTAATATAAAATATATAATATAATTTAATTATTAAA
1 ATATAATAATATAAA-ATAATATAAAA-ATATAATATAA-TTAAAT-TTAAA
* *
62677957 ATAT-ATAATTTATAAAATAATATAATAATATAATATAATTAAATTTAAT
1 ATATAATAA--TATAAAATAATATAAAAATATAATATAATTAAATTTAAA
62678006 ATATATATAATATTAATAATATATATAAA
1 ATATA-ATAATA-TAA-AATA-ATATAAA
62678035 TTAATAATAA
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
49 10 0.15
50 12 0.18
51 23 0.35
52 17 0.26
53 3 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (48 bp):
ATATAATAATATAAAATAATATAAAAATATAATATAATTAAATTTAAA
Found at i:62678014 original size:122 final size:117
Alignment explanation
Indices: 62677786--62678455 Score: 283
Period size: 114 Copynumber: 5.6 Consensus size: 117
62677776 TTATTATATT
* *
62677786 ATAATATAAAAATTAATTATATATATAATATAATAAATTATAATTAATATTAATAAATAATATAT
1 ATAATATAAAAATTAATTAAATATATAATATAATAAATTATAA-TAATATTAATAAATAAAATA-
* * * * * *
62677851 ATAATTAATTATATAAATATTATTATATTAAATATTTATATATTAAATTAATTATAT
64 AT-A-TAATAATAT-AATATAATTAAATTTAATATATATATATTATATTAATTATAT
* * **
62677908 ATAATAATAAAATTTAATATAAAATATATAATATAATTTAATTATTAA-AATATATAATTTATAA
1 ATAAT-ATAAAAATTAAT-T-AAATATATAATATAA-TAAATTA-TAATAATAT-TAATAAATAA
62677972 AATAATATAATAATATAATATAATTAAATTTAATATATATATA--ATATTAA-TA-AT
60 AATAATATAATAATATAATATAATTAAATTTAATATATATATATTATATTAATTATAT
* * * * *
62678026 AT-ATAT--AAATTAATAATAAATA-ATATTATTATTAATATTATTATATTATT-AT-ATTAAAA
1 ATAATATAAAAATTAAT--TAAATATATAATA-TAATAA-ATTATAATAATATTAATAAATAAAA
* * * ** *
62678085 TTAT-TAATTAT-TATTA-AATTCTA-TT-ATATATATAAATTATATTAA--A-AT
62 TAATATAATAATATAATATAATTAAATTTAATATATATATATTATATTAATTATAT
* * *
62678133 ATAAAATAAAATATTATATTTATAATATATTAAATATAATTAAA--ATTATAATATTAATAAAAA
1 ATAATATAAAA-ATTA-A-TTA-AATATA-T-AATATAA-TAAATTATAATAATATTAAT-AAAT
* * * * * * *
62678196 AAAATAATTATTATAAATATTATATTATTATTATATTAATTAAATAATATTTTAAATTAAATTAT
58 AAAATAA-TATAAT-AATATAATATAATTA-AAT-TTAA-TATAT-ATATATTATATT-AATTA-
*
62678261 TAA
115 TAT
* * * * * *
62678264 ATATATATAAATATTATTTATATATATAATATATTAATTATATATATAATTATTAATAAATATAA
1 ATA-ATATAAAAATTAATTAAATATATAATATAATAAAT-TATA-ATAA-TATTAATAAATAAAA
* * *
62678329 T-A-ATAA-AAT-TAAT-T-ATTATATATAATACATA-AT-TATATATTCTAATTATAT
62 TAATATAATAATATAATATAATTAAATTTAATATATATATAT-TATA-T-TAATTATAT
* *
62678380 ATAATA-AATAATTATTTTATAAT-TAATAATATAA-AAATTATAAT-ATATATAATATAATTAA
1 ATAATATAAAAATTA-ATTA-AATAT-ATAATATAATAAATTATAATAATAT-TAATA-AA-TAA
*
62678441 TATAA-ATATATAATA
60 AATAATATA-ATAATA
62678456 ATTATTAATT
Statistics
Matches: 421, Mismatches: 66, Indels: 126
0.69 0.11 0.21
Matches are distributed among these distances:
106 10 0.02
107 7 0.02
108 15 0.04
109 4 0.01
110 8 0.02
111 17 0.04
112 23 0.05
113 18 0.04
114 40 0.10
115 31 0.07
116 24 0.06
117 15 0.04
118 11 0.03
119 8 0.02
120 12 0.03
121 6 0.01
122 29 0.07
123 24 0.06
124 6 0.01
125 28 0.07
126 35 0.08
127 6 0.01
128 8 0.02
129 15 0.04
130 7 0.02
131 8 0.02
132 6 0.01
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.45
Consensus pattern (117 bp):
ATAATATAAAAATTAATTAAATATATAATATAATAAATTATAATAATATTAATAAATAAAATAAT
ATAATAATATAATATAATTAAATTTAATATATATATATTATATTAATTATAT
Found at i:62678055 original size:3 final size:3
Alignment explanation
Indices: 62678049--62678100 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
62678039 TAATAAATAA
* * *
62678049 TAT TAT TAT TAA TAT TAT TA- TAT TAT TA- TAT TAA AAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
62678093 TAT TAT TA
1 TAT TAT TA
62678101 AATTCTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.82
4 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:62678140 original size:181 final size:176
Alignment explanation
Indices: 62677676--62678073 Score: 406
Period size: 176 Copynumber: 2.2 Consensus size: 176
62677666 TATAATTTTA
* * * * *
62677676 TATATAATATAATATT-TATATAATATATATATATATT--ATTTATTATATATATTATTATAATA
1 TATATAA-ATAATATTATAT-TAA-ATATTTATATATTAAATTAATTATATATAATAATAAAAT-
* ** *
62677738 TTAATAATAATATAATTATAATATAATAATAAATTATATTATTATATTATAATATA-AAAATTAA
62 TTAAT-ATAAAAT-A-TATAATATAAT--TAAA--ATATTAAAATA-TATAATTTATAAAA-TAA
62677802 T-T-ATATATATAATATAATAAATTATAATTAATATTAATAAATAATATATATAATTAAT
118 TATAATA-ATATAATATAATAAATTATAATTAATATTAATAAATAATATATATAATTAAT
*
62677860 TATATAAATATTATTATATTAAATATTTATATATTAAATTAATTATATATAATAATAAAATTTAA
1 TATATAAATAATATTATATTAAATATTTATATATTAAATTAATTATATATAATAATAAAATTTAA
* *
62677925 TATAAAATATATAATATAATTTAATTATTAAAATATATAATTTATAAAATAATATAATAATATAA
66 TATAAAATATATAATATAATTAAAATATTAAAATATATAATTTATAAAATAATATAATAATATAA
62677990 TATAATTAAATT-TAA-TATATATATAATATTAATAATATATATAAATTAA-
131 TATAA-TAAATTATAATTA-ATAT-TAATA--AATAATATATAT-AATTAAT
62678039 TA-ATAAATAATATTATTATT-AATA-TTATTATATTA
1 TATATAAATAATATTA-TATTAAATATTTA-TATATTA
62678074 TTATATTAAA
Statistics
Matches: 187, Mismatches: 13, Indels: 34
0.80 0.06 0.15
Matches are distributed among these distances:
175 14 0.07
176 31 0.17
177 17 0.09
178 26 0.14
179 18 0.10
180 17 0.09
181 1 0.01
182 18 0.10
183 15 0.08
184 30 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (176 bp):
TATATAAATAATATTATATTAAATATTTATATATTAAATTAATTATATATAATAATAAAATTTAA
TATAAAATATATAATATAATTAAAATATTAAAATATATAATTTATAAAATAATATAATAATATAA
TATAATAAATTATAATTAATATTAATAAATAATATATATAATTAAT
Found at i:62678160 original size:181 final size:178
Alignment explanation
Indices: 62677585--62678414 Score: 436
Period size: 180 Copynumber: 4.6 Consensus size: 178
62677575 ATATTTTATA
* * *
62677585 ATAATTATAAAT-TTATAATATATTAA-TTA-AAAATTAATATATTATATAT-A-ATAATTAAA-
1 ATAATTA-AAATATTAAAATATA-TAATTTATAAAA-TAATATAATAAATATAATATAATTAAAT
* * *
62677644 TAAATATAATATT-ATAAATAAT-TATA-ATTTTA-TATATAATATAATATT-TATATAATATAT
63 TTAATATAATATTAATAAATAATATATATAATTAATTATATAA-ATAATATTATAT-TAA-ATAT
* * * * * *
62677704 ATATATATT--ATTTATTATATATATTATTATAATATTAATAATAATATAATTATAAT
125 TTATATATTAAATTAATTATATATAATAATAAAAT-TTAAT-ATAAAAT-A-TATAAT
** * *
62677760 ATAATAATAAATTATATTATTATATTATAATATA-AAAATTAAT-T-ATATATATAATATAA-TA
1 ATAAT--TAAA--ATATTAAAATA-TATAATTTATAAAA-TAATATAATAAATATAATATAATTA
*
62677821 AATTATAAT-TAATATTAATAAATAATATATATAATTAATTATATAAATATTATTATATTAAATA
60 AATT-TAATATAATATTAATAAATAATATATATAATTAATTATATAAATAATATTATATTAAATA
62677885 TTTATATATTAAATTAATTATATATAATAATAAAATTTAATATAAAATATATAAT
124 TTTATATATTAAATTAATTATATATAATAATAAAATTTAATATAAAATATATAAT
* *
62677940 ATAATTTAATTATTAAAATATATAATTTATAAAATAATATAAT-AATATAATATAATTAAATTTA
1 ATAATTAAAATATTAAAATATATAATTTATAAAATAATATAATAAATATAATATAATTAAATTTA
62678004 ATAT-ATATATAATATTAATAATATATATAAATTAA-TA-ATAAATAATATTATTATT-AATATT
66 ATATAATAT-TAATA--AATAATATATAT-AATTAATTATATAAATAATATTA-TATTAAATA-T
* * * * * *
62678065 ATTATATTATTATATTAAAATTAT-TAATTATTATTAAATTCTATTAT-ATATATA-AAT
125 -TTATA-TATTAAATT--AATTATAT-ATAATAATAAAATT-TAATATAAAATATATAAT
** * *
62678122 -TATATTAAAATA-TAAAATA-A-AATATTATATTTATAATATATTAAATATAATTAAAATTATA
1 ATA-ATTAAAATATTAAAATATATAAT-TTATA-AAATAATATAATAAATATAA-TATAATTA-A
* * *
62678183 ATATTAATA-AA-A--AA-AAATAAT-TATTATAAAT-ATTATATTATTATTATATTA-ATTAAA
61 AT-TTAATATAATATTAATAAATAATATA-TATAATTAATTATA-TA-AATAATATTATATTAAA
* * * ** *
62678240 TAATATTTTAAATTAAATT-ATTAAATATATATAAATATTATTTATATATATAATATATTAAT
122 T-AT-TTATATATTAAATTAATTATATATA-AT-AATAAAATTTA-ATATAAAATATA-TAAT
* * * *
62678302 -TATATATATAATTATTAATAA-ATATAA-TAATAAAATTAAT-TATTATATATAATACATAATT
1 ATA-AT-TA-AAATATTAA-AATATATAATTTATAAAA-TAATATAATAAATATAAT--ATAATT
* *
62678363 ATATATTCTAAT-T-ATATATAATAAATAATTATTTTATAATTAATAATATAAA
59 A-A-ATT-TAATATAATAT-TAATAAATAA-TA-TATATAATTAATTATATAAA
62678415 AATTATAATA
Statistics
Matches: 520, Mismatches: 57, Indels: 142
0.72 0.08 0.20
Matches are distributed among these distances:
175 23 0.04
176 40 0.08
177 31 0.06
178 53 0.10
179 49 0.09
180 71 0.14
181 44 0.08
182 56 0.11
183 71 0.14
184 49 0.09
185 9 0.02
187 2 0.00
188 6 0.01
189 2 0.00
190 8 0.02
191 6 0.01
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.46
Consensus pattern (178 bp):
ATAATTAAAATATTAAAATATATAATTTATAAAATAATATAATAAATATAATATAATTAAATTTA
ATATAATATTAATAAATAATATATATAATTAATTATATAAATAATATTATATTAAATATTTATAT
ATTAAATTAATTATATATAATAATAAAATTTAATATAAAATATATAAT
Found at i:62678162 original size:200 final size:200
Alignment explanation
Indices: 62677785--62678313 Score: 455
Period size: 200 Copynumber: 2.7 Consensus size: 200
62677775 ATTATTATAT
62677785 TATAATATAAAAATTAATTATATATATAATATAATAAATTATAATTAATATTAATAAATAATATA
1 TATAATATAAAAATTAATTATATATATAATATAATAAATTATAATTAATATTAATAAATAATATA
*
62677850 TATAATTAATTATATAAATATTATTATATTAAATATTTATATATTAAATTAATTATATATAATAA
66 TATAATTAATTATATAAATATTATTATATTAAATATTAATATATTAAATTAATTATATATAATAA
* *
62677915 TAAAATTTAATATAAAATATATAATATAATTTAATTATTAAAATATATAATTTATAAAATAATAT
131 TAAAATTTAATATAAAATATAAAATAAAATTTAATTATTAAAATATATAATTTATAAAATAATAT
62677980 AATAA
196 AATAA
62677985 TATAATATAATTAAATTTAA-TATATATATAATATTAATAATATATATAAATT-A-A-TAATAAA
1 TATAATATAA--AAA-TTAATTATATATATAATA-TAATAA-AT-TAT-AATTAATATTAATAAA
* *
62678046 TAATAT-TATTATTAA-TAT-TATTATATTATTATATTAAAATTATTAAT-TATT--ATTAAATT
59 TAATATATATAATTAATTATATA-AATATTATTATATT-AAA-TATTAATATATTAAATT-AATT
* *
62678105 CTAT-T-ATATATATAAA-TT-ATATTAAAATATAAAATAAAATATT-A-TATTTATAATATATT
120 ATATATAATA-ATA-AAATTTAATA-TAAAATATAAAATAAAAT-TTAATTA-TTAAAATATA-T
* * * *
62678164 AA-ATAT-AATTAAAATTATAA
179 AATTTATAAAATAATATAATAA
* * * *
62678184 TATTAATAAAAAAAAATAATTAT-TATA-AATAT--TATATTATTATT-ATATTAATTAAATAAT
1 TA-TAAT-ATAAAAATTAATTATATATATAATATAATAAATTATAATTAATATTAA-TAAATAAT
* * ** * *
62678244 AT-TTTAAATTAAATTAT-TAAATATATATAAATATTATTTA-TATATATAATATATTAATTATA
63 ATATAT-AATT-AATTATATAAATAT-TAT-TATATTAAATATTA-ATATATTAAATTAATTATA
62678306 TAT-ATAAT
123 TATAATAAT
62678314 TATTAATAAA
Statistics
Matches: 273, Mismatches: 23, Indels: 68
0.75 0.06 0.19
Matches are distributed among these distances:
191 4 0.01
192 4 0.01
193 5 0.02
194 14 0.05
195 5 0.02
196 11 0.04
197 16 0.06
198 21 0.08
199 34 0.12
200 54 0.20
201 34 0.12
202 31 0.11
203 29 0.11
204 3 0.01
205 4 0.01
206 4 0.01
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (200 bp):
TATAATATAAAAATTAATTATATATATAATATAATAAATTATAATTAATATTAATAAATAATATA
TATAATTAATTATATAAATATTATTATATTAAATATTAATATATTAAATTAATTATATATAATAA
TAAAATTTAATATAAAATATAAAATAAAATTTAATTATTAAAATATATAATTTATAAAATAATAT
AATAA
Found at i:62678274 original size:154 final size:154
Alignment explanation
Indices: 62677945--62678339 Score: 370
Period size: 152 Copynumber: 2.5 Consensus size: 154
62677935 ATAATATAAT
* * *
62677945 TTAATTATTAAA-ATATATAATTTATA-AAATAATATAATAATATAATATAATTA-AATT-TAAT
1 TTAATTATTAAATATATATAAATTATATTAA-AATATAA-AATA-AA-ATAATTATATTTATAAT
* * * *
62678006 ATATATATAATATTAA-TAATATATATAAATTAATAATAAATAATATTATTATTAATATTATTAT
62 ATAT-TA-AATA-TAATTAAAAT-TATAAATTAATAAAAAAAAATATTATTATAAATATTATTAT
*
62678070 ATTATTATATTAAAATTATTAATTATTATTAAA
123 ATTATTATATT-AAATTAATAATTATTATTAAA
*
62678103 TT--CTATT--ATATATATAAATTATATTAAAATATAAAATAAAAT-ATTATATTTATAATATAT
1 TTAATTATTAAATATATATAAATTATATTAAAATATAAAATAAAATAATTATATTTATAATATAT
62678163 TAAATATAATTAAAATTATAATATTAATAAAAAAAAATAATTATTATAAATATTA-TATTATTAT
66 TAAATATAATTAAAATTATAA-ATTAATAAAAAAAAAT-ATTATTATAAATATTATTA-TATTAT
62678227 TATATT-AATTAAATAA-TATT-TTAAA
128 TATATTAAATT-AATAATTATTATTAAA
* * * * * *
62678252 TTAAATTATTAAATATATATAAA-TATTATTTATATATATAATATATTAATTATATATATAATTA
1 TT-AATTATTAAATATATATAAATTA-TATTAAAATATAAAATAAAATAATTATATTTATAA-TA
*
62678316 TTAATAAATATAATAATAAAATTA
63 -TATTAAATATAAT--TAAAATTA
62678340 ATTATTATAT
Statistics
Matches: 200, Mismatches: 17, Indels: 39
0.78 0.07 0.15
Matches are distributed among these distances:
149 7 0.04
150 16 0.08
151 33 0.17
152 38 0.19
153 12 0.06
154 32 0.16
155 32 0.16
156 8 0.04
157 12 0.06
158 2 0.01
159 8 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (154 bp):
TTAATTATTAAATATATATAAATTATATTAAAATATAAAATAAAATAATTATATTTATAATATAT
TAAATATAATTAAAATTATAAATTAATAAAAAAAAATATTATTATAAATATTATTATATTATTAT
ATTAAATTAATAATTATTATTAAA
Found at i:62678276 original size:35 final size:37
Alignment explanation
Indices: 62677582--62678655 Score: 147
Period size: 36 Copynumber: 29.2 Consensus size: 37
62677572 ATTATATTTT
*
62677582 ATAATAATTATAAATTTATAATATATT-AAT-TA-A-AA
1 ATAAT-ATT-TAAATATATAATATATTAAATATATATAA
62677617 ATTAATATATT--ATATATAATA-ATTAAATA-A-AT--
1 A-TAATAT-TTAAATATATAATATATTAAATATATATAA
* *
62677649 ATAATATTATAAATA-ATTATA-ATT--TTATATATAA
1 ATAATATT-TAAATATATAATATATTAAATATATATAA
** *
62677683 TATAATATTTATATAATATATATATATATTATTTAT-TATAT
1 -ATAATA-TT-TA-AATATATA-ATATATTAAATATATATAA
*
62677724 ATATTA-TTATAATAT-TAATA-A-T-AATATAATTATAA
1 ATAATATTTA-AATATATAATATATTAAATAT-A-TATAA
* *
62677759 TATAATA-ATAAATTATATTATTATATT--ATA-ATATAA
1 -ATAATATTTAAA-TATA-TAATATATTAAATATATATAA
* * *
62677795 A-AATTAATTATATATATAATATAAT-AA-AT-TATAA
1 ATAA-TATTTAAATATATAATATATTAAATATATATAA
*
62677829 TTAATATTAATAAATA-ATATATATAATT-AAT-TATATAA
1 ATAATATT--TAAATATATA-ATAT-ATTAAATATATATAA
* *
62677867 ATATTATTATATTAAATAT-TTATATATTAAAT-TAATTATAT
1 ATA--A-TAT-TTAAATATATAATATATTAAATAT-A-TATAA
* *
62677908 ATAATA-ATAAA-ATTTAATATA--AAATATATAATATA
1 ATAATATTTAAATATATAATATATTAAATATAT-ATA-A
* * *
62677943 ATTTAATTATTAAAATATATAATTTATAAAATAATATAATAA
1 A--TAA-TATTTAAATATATAATATATTAAAT-ATAT-ATAA
* *
62677985 TATAATATAATTAAAT-T-TAATATA-TATATA-ATATTA
1 -ATAATAT--TTAAATATATAATATATTAAATATATATAA
* *
62678021 ATAATATATATAA-AT-TAATA-A-TAAATAATATTATTA
1 ATAATATTTA-AATATATAATATATTAAAT-ATA-TATAA
* * * *
62678057 TTAATA-TT-ATTATATTATTATATTAAA-AT-TATTA
1 ATAATATTTAAATATA-TAATATATTAAATATATATAA
* * * *
62678091 ATTAT-TATTAAATTCTATTATATATATAAAT-TATATTA
1 ATAATAT-TTAAA-TATATAATATAT-TAAATATATATAA
* * *
62678129 A-AATA-TAAAATAAAATATTATATTTATAATATAT-TAA
1 ATAATATTTAAAT-ATATAATATA-TTA-AATATATATAA
* *
62678166 AT-ATAATTAAA-ATTATAATATTAATAAA-A-A-A-AA
1 ATAATATTTAAATA-TATAATA-TATTAAATATATATAA
* *
62678199 ATAATTATTATAAATATTATATTATTATTATAT-TA-ATTAA
1 ATAA-TATT-TAAATA-TATAATA-TATTAAATATATA-TAA
62678239 ATAATATTTTAAAT-TA-AAT-TATTAAATATATATAA
1 ATAATA-TTTAAATATATAATATATTAAATATATATAA
* * *
62678274 ATATTATTTATATATATAATATATT-AAT-TATATAT
1 ATAATATTTAAATATATAATATATTAAATATATATAA
* * *
62678309 ATAATTATTAATAAATATAATAATAAAATTAATTAT-TATAT
1 ATAA-TATT--TAAATAT-ATAAT-ATATTAAATATATATAA
** * * * *
62678350 ATAATACATAATTATATATTCTAATTATATATA-ATAA
1 ATAATATTTAAATATATAATAT-ATTAAATATATATAA
62678387 ATAATTATTTTATAAT-TAATAATATAAAAATTATAATATATATAA
1 ATAA-TA-TTTA-AATAT-ATAATAT----ATTA-AATATATATAA
*
62678432 TATAATTAATATAAATATATAATA-ATTATTAAT-TGATATAA
1 -ATAA-T-ATTTAAATATATAATATATTA--AATAT-ATATAA
* * * *
62678473 AGTTATATATTT-AATAAATTATATATT-ATTAT-TATTAT
1 A--TA-ATATTTAAATATATAATATATTAAATATATA-TAA
** * *
62678511 ATAATATTCTTTATAT-TAATA-A-TATATATTTA-AA
1 ATAATATT-TAAATATATAATATATTAAATATATATAA
62678545 ATAATATAGTT--ATATATAATATA-TAAAT-TATAT-A
1 ATAATAT--TTAAATATATAATATATTAAATATATATAA
* *
62678579 ATAA-A-TTAATTATATAATATATT--ATA-A-ATAT
1 ATAATATTTAAATATATAATATATTAAATATATATAA
* * *
62678610 AT-ATATTTAAATTATATTATATAATAAA-ATATATAT
1 ATAATATTTAAA-TATATAATATATTAAATATATATAA
62678646 ATAAATATTT
1 AT-AATATTT
62678656 TATTTATATA
Statistics
Matches: 778, Mismatches: 105, Indels: 309
0.65 0.09 0.26
Matches are distributed among these distances:
30 8 0.01
31 14 0.02
32 32 0.04
33 48 0.06
34 84 0.11
35 90 0.12
36 123 0.16
37 94 0.12
38 68 0.09
39 38 0.05
40 71 0.09
41 45 0.06
42 19 0.02
43 15 0.02
44 5 0.01
45 13 0.02
46 10 0.01
47 1 0.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.46
Consensus pattern (37 bp):
ATAATATTTAAATATATAATATATTAAATATATATAA
Found at i:62678441 original size:4 final size:5
Alignment explanation
Indices: 62678282--62678697 Score: 67
Period size: 5 Copynumber: 85.4 Consensus size: 5
62678272 AAATATTATT
62678282 TATATA TATAA TAT-A T-TAA TTATATA TATAA TTATTAA TA-AA TATAA
1 TATA-A TATAA TATAA TATAA -TATA-A TATAA -TA-TAA TATAA TATAA
* * * *
62678329 TAATAA AATTAA T-TAT TAT-A TATAA TACATAA T-T-A TATAT TCTAA
1 T-ATAA TA-TAA TATAA TATAA TATAA T--ATAA TATAA TATAA TATAA
* **
62678374 T-TATA TATAA TA-AA TA-AT TATTT TATAA TTAATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA -T-ATAA TATAA TATAA
*
62678417 TTATAA TAT-A TATAA TATAA T-TAA TATAA -AT-A TATAA TA-AT TATTAA
1 -TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA-TAA
* * * * * *
62678464 T-TGA TATAA -AGTTA TAT-A TTTAA TA-AA T-T-A TATAT TATTAT TATTA
1 TATAA TATAA TA-TAA TATAA TATAA TATAA TATAA TATAA TA-TAA TATAA
** * * * * *
62678510 TATAA TATTC T-TTA TATTA -ATAA TATATA TTTAA AATAA TATAG T-TATA
1 TATAA TATAA TATAA TATAA TATAA TATA-A TATAA TATAA TATAA TATA-A
* * *
62678559 TATAA TATATA AATTA TATAA TA-AA T-TAA T-T-A TATAA TATAT TATAA
1 TATAA TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
* * * *
62678606 -AT-A TATATA TTTAA -ATTA TATTA TATAA TAAAA TATATA TATAAA
1 TATAA TATA-A TATAA TATAA TATAA TATAA TATAA TATA-A TAT-AA
** * *
62678651 TATTT TATTTA TATAA TTATAA T-T-A TATACA -ATAA TTTAA TATAA
1 TATAA TA-TAA TATAA -TATAA TATAA TATA-A TATAA TATAA TATAA
62678696 TA
1 TA
62678698 ATATTTAATA
Statistics
Matches: 302, Mismatches: 50, Indels: 117
0.64 0.11 0.25
Matches are distributed among these distances:
3 13 0.04
4 76 0.25
5 133 0.44
6 66 0.22
7 14 0.05
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (5 bp):
TATAA
Found at i:62678470 original size:27 final size:24
Alignment explanation
Indices: 62676293--62679139 Score: 218
Period size: 23 Copynumber: 121.2 Consensus size: 24
62676283 ATCTTTTAAT
*
62676293 TAATAT-ATTAATATCCAATA-ATA
1 TAATATAATTAATAT-AAATATATA
62676316 TAAATATAATT-A-AT-AATAT-TA
1 T-AATATAATTAATATAAATATATA
*
62676337 TAATAATAATAAATAT-AA-ATATA
1 TAAT-ATAATTAATATAAATATATA
* *
62676360 TAATATTATTATATATATAATAT-TT
1 TAATATAATTA-ATATA-AATATATA
* *
62676385 TAATA-AATATAATATATAAAAAATAA
1 TAATATAAT-TAATATA-AATATAT-A
* *
62676411 AAATTTTATAATTTAAT-TATATTATATA
1 TAA---TATAA-TTAATATA-AATATATA
* *
62676439 TAAATTTAGTTAAATATATAATAT-TA
1 T-AATATAATT-AATATA-AATATATA
* *
62676465 TAAATTATAATAAAT-TATATATA-A
1 T-AA-TATAATTAATATAAATATATA
*
62676489 TAATATAAATTTAAT-T-AATTTAT-
1 TAATAT-AA-TTAATATAAATATATA
* * **
62676512 TAATTATATTTTATATATTTATATA
1 TAA-TATAATTAATATAAATATATA
*
62676537 TAATAT-ATTAA-ATAATTA-ATA
1 TAATATAATTAATATAAATATATA
* *
62676558 TTAATAATAA-AAATTATAAATA-AAA
1 -TAAT-ATAATTAA-TATAAATATATA
62676583 TAATA-AATT-AT-TAAATAAATATA
1 TAATATAATTAATATAAAT--ATATA
**
62676606 TTTTATAATT--TAT-AATATATA
1 TAATATAATTAATATAAATATATA
* *
62676627 TTATATAATTAATA-AAATATAAAA
1 TAATATAATTAATATAAATAT-ATA
*
62676651 TAATAT-ATATATTA-AAATAT-TA
1 TAATATAAT-TAATATAAATATATA
* *
62676673 TAA-ATAA--AATATTAATATTATT
1 TAATATAATTAATATAAATA-TATA
62676695 TAATAATATATT-ATAT-AAT-T-TA
1 TAAT-ATA-ATTAATATAAATATATA
* *
62676717 -AAT-TAAATTTATATAAATTTATA
1 TAATAT-AATTAATATAAATATATA
* * *
62676740 TATTTATAATTAATTATTAATAAATA
1 TA-ATATAATTAA-TATAAATATATA
* *
62676766 TAAT-TAATCAA-ATATAATATTTA
1 TAATATAATTAATATA-AATATATA
*
62676789 TAATATTA-TAA-AT-AA-ATATA
1 TAATATAATTAATATAAATATATA
* *
62676809 TAATATATATATAATATTAATTTA-A
1 TAATATA-AT-TAATATAAATATATA
* *
62676834 T-TTATATATTAATAATATTATATATA
1 TAATATA-ATTAAT-ATA-AATATATA
* * * *
62676860 TATTATTATAAAT-TAAATAAATA
1 TAATATAATTAATATAAATATATA
* * *
62676883 T-TTA-AATTAATTTAAATATTATT
1 TAATATAATTAATATAAATA-TATA
* *
62676906 TAATA-ATATAAAT-TAAA-ATTTA
1 TAATATA-ATTAATATAAATATATA
* *
62676928 TTAATAAAATTAATAT-AATAAATA
1 -TAATATAATTAATATAAATATATA
* *
62676952 -AAT-TATATTAAATATATAA-ATTTT
1 TAATATA-ATT-AATATA-AATATATA
*
62676976 TAATATATATT-ATA-AAATAATATT
1 TAATATA-ATTAATATAAAT-ATATA
*
62677000 TAA-ATAATTAAATTTATGAAT-TA-A
1 TAATATAATT-AA--TATAAATATATA
*
62677024 -AATAATAA-TATTATAAAT-T-TA
1 TAAT-ATAATTAATATAAATATATA
* * * *
62677045 TTATAATAATTATTATAATTATTATT
1 TAAT-ATAATTAATATAAATA-TATA
62677071 TAATATAA-TATATATAAATATATA
1 TAATATAATTA-ATATAAATATATA
* * *
62677095 -ATTAT-ATTAATATTATATATTTA
1 TAATATAATTAATA-TAAATATATA
* * * * *
62677118 TATTATTATTAAATATAATTTTAAAA
1 TAATATAATT-AATATAAATAT-ATA
* *
62677144 TAATATGTATTTA-AT-AATATAT-
1 TAATAT-AATTAATATAAATATATA
* *
62677166 TAATAT-TTTATTTATAAATAT-TAA
1 TAATATAATTA-ATATAAATATAT-A
* *
62677190 TAAT-T--TTAATATTATTATATTA
1 TAATATAATTAATATAAATATA-TA
* * * *
62677212 TATTTTTATATT-ATTTAATTA-ATA
1 TA-ATATA-ATTAATATAAATATATA
* * *
62677236 T-ATATATTTAATAATAATTATAAATT
1 TAATATAATTAAT-ATAA--ATATATA
* *
62677262 TAATATATTTAAT-TAAAAATAATA
1 TAATATAATTAATATAAATAT-ATA
* * * *
62677286 CAATATTA-TATTAT-AAT-TAAA
1 TAATATAATTAATATAAATATATA
**
62677307 TAATATAATT-ATAATATTTAGTATAA
1 TAATATAATTAAT-ATAAATA-TAT-A
62677333 TAATATTAATTAATATAAATATATA
1 TAATA-TAATTAATATAAATATATA
* *
62677358 TATATATAAATTAAATATAAA-ACATT
1 TA-ATAT-AATT-AATATAAATATATA
* *
62677384 TAA-AAAATTTA-ATAAAT-T-T-
1 TAATATAATTAATATAAATATATA
62677403 TAATATAA--AATTTATAATATATATA
1 TAATATAATTAA--TATAA-ATATATA
* * *
62677428 TTAATAT-ATAAATTTAATTATATA
1 -TAATATAATTAATATAAATATATA
* ** *
62677452 TATATATAATT-TTATATTTTTA-A
1 TA-ATATAATTAATATAAATATATA
* * * *
62677475 TAA-ATTATTATATATTATTTTATA
1 TAATATAATTA-ATATAAATATATA
* * **
62677499 TGATATTA-TAATATATTTA-ATAA
1 TAATATAATTAATATAAATATAT-A
** ***
62677522 TAATATAATTTTTATTTTTATATGA
1 TAATATAATTAATATAAATATAT-A
* *
62677547 TAAATTTAATTATATTTTAATATATATTA
1 T-AATATAATTA-A-TATAA-ATATA-TA
*
62677576 TATTTTATAA-TAATTATAAAT-T-TA
1 TA--ATATAATTAA-TATAAATATATA
62677600 TAATAT-ATTAAT-TAAA-A-AT-
1 TAATATAATTAATATAAATATATA
*
62677619 TAATAT-ATT-ATATATAATAATTAAA
1 TAATATAATTAATATA-AAT-A-TATA
*
62677644 TAAATATAA-TATTATAAATA-ATTA
1 T-AATATAATTAATATAAATATA-TA
* *
62677668 TAATTTTATATATAATATAATATTTATA
1 TAA-TATA-AT-TAATATAA-ATATATA
* *
62677696 TAATAT-A-T-ATATATATTATTTA
1 TAATATAATTAATATA-AATATATA
* *
62677718 TTATATATATT-AT-TATA-ATAT-
1 TAATATA-ATTAATATAAATATATA
62677739 TAATAATAATATAAT-TATAATATA-A
1 TAAT-ATAAT-TAATATA-AATATATA
* *
62677764 TAATA-AATT-ATATTATTATATTA
1 TAATATAATTAATATAAATATA-TA
*
62677787 TAATATAA--AA-ATTAAT-TATA
1 TAATATAATTAATATAAATATATA
*
62677807 T-ATATAATATAATA-AATTATA-A
1 TAATATAAT-TAATATAAATATATA
62677829 TTAATATTAA-TAA-AT-AATATATA
1 -TAATA-TAATTAATATAAATATATA
62677852 TAAT-TAATT-ATATAAATAT-TA
1 TAATATAATTAATATAAATATATA
*
62677873 T--TAT-ATTAA-AT--ATTTATA
1 TAATATAATTAATATAAATATATA
*
62677891 TATTA-AATTAATTAT--ATATA-A
1 TAATATAATTAA-TATAAATATATA
*
62677912 TAATAAAATTTAATATAAA-ATATA
1 TAATATAA-TTAATATAAATATATA
62677936 TAATATAATTTAATTATTAAA-ATATA
1 TAATATAA-TTAA-TA-TAAATATATA
*
62677962 TAATTTATAAAATAATAT-AATA-ATA
1 TAA--TAT-AATTAATATAAATATATA
*
62677987 TAATATAATTAAATTTAATATATATA
1 TAATATAATT-AATATAA-ATATATA
* *
62678013 TAATATTAA-TAATATATATAAAT-
1 TAATA-TAATTAATATAAATATATA
* *
62678036 TAATAATAAATAATAT-TAT-TAT-
1 TAAT-ATAATTAATATAAATATATA
* * *
62678058 TAATATTATT-ATATTATTATATTA
1 TAATATAATTAATATAAATATA-TA
* * *
62678082 AAATTATTAATTATTATTAAATTCTATTA
1 TAA-TA-TAATTAATA-TAAA-TATA-TA
62678111 TATATATAAATT-ATATTAAA-ATATA
1 TA-ATAT-AATTAATA-TAAATATATA
* *
62678136 -AA-ATAA--AATAT-TATATTTA
1 TAATATAATTAATATAAATATATA
* *
62678155 TAATAT-ATTAAATATAATTA-AAA
1 TAATATAATT-AATATAAATATATA
* * *
62678178 TTATA-ATATTAATA-AAA-AAAAA
1 TAATATA-ATTAATATAAATATATA
* * *
62678200 TAATTATTATAAATAT-TATAT-TA
1 TAA-TATAATTAATATAAATATATA
*
62678223 TTAT-TATATTAAT-TAAATA-ATA
1 TAATATA-ATTAATATAAATATATA
**
62678245 TTTTA-AATTAAATTATTAAATATATA
1 TAATATAATT-AA-TA-TAAATATATA
*
62678271 TAA-AT-ATT-AT-T-TATATATA
1 TAATATAATTAATATAAATATATA
62678290 TAATAT-ATTAAT-T--ATATATA
1 TAATATAATTAATATAAATATATA
62678310 TAAT-T-ATT-A-ATAAATATA-A
1 TAATATAATTAATATAAATATATA
* *
62678329 TAATAAAATTAAT-T-ATTATATA
1 TAATATAATTAATATAAATATATA
*
62678351 TAATACATAATTATATATTCTAATTATATA
1 TAAT--ATAATTA-ATA---TAAATATATA
* *
62678381 TAATAAATAATTATTTTATAAT-TA-A
1 TAAT--ATAATTAATATA-AATATATA
*
62678406 TAATATAA-AAAT-TATAATATATA
1 TAATATAATTAATATA-AATATATA
62678429 TAATATAATTAATATAAATATATAA
1 TAATATAATTAATATAAATATAT-A
*
62678454 TAATTATTAATTGATATAAAGTTATATA
1 TAA-TA-TAATTAATATAAA--TATATA
*
62678482 TTTAATA-AATTATATATTATTATTATTATA
1 --TAATATAATTA-ATA-TA--AATA-TATA
** * *
62678512 TAATATTCTTTATATTAATA-ATA
1 TAATATAATTAATATAAATATATA
*
62678535 T-ATAT--TTAAAAT-AATATAGT-
1 TAATATAATTAATATAAATATA-TA
62678555 TATATATAA-T-ATATAAAT-TATA
1 TA-ATATAATTAATATAAATATATA
62678577 TAATA-AATTAATTATATAATATATTA
1 TAATATAATTAA-TATA-AATATA-TA
*
62678603 TAA-AT-ATATATATTTAAAT-TATA
1 TAATATAAT-TA-ATATAAATATATA
* * *
62678626 TTATATAA-TAAAATATATATATA
1 TAATATAATTAATATAAATATATA
* * *
62678649 -AATATTTTATTTATATAATTATA-A
1 TAATA--TAATTAATATAAATATATA
* * *
62678673 TTATATACAATAAT-TTAATATA-A
1 TAATATA-ATTAATATAAATATATA
62678696 TAATAT--TTAATA-ATAATAT-T-
1 TAATATAATTAATATA-AATATATA
* *
62678716 TAATTTATTTATATATTAAATAT-TA
1 TAATATAATTA-ATA-TAAATATATA
* *
62678741 TAATTATATTTAATTTTAAATATA-A
1 TAA-TATAATTAA-TATAAATATATA
* *
62678766 TTATTATAA-TAATAATTAAT-TA-A
1 -TAATATAATTAAT-ATAAATATATA
** * *
62678789 TTGT-TAATTAAAAATAATTAT-TA
1 TAATATAATT-AATATAAATATATA
* *
62678812 TATTATTAATTAATAATAATTAT-TAA
1 TAATA-TAATTAAT-ATAAATATAT-A
*
62678838 TAAATTTAA-TAATATTAAATA-ATA
1 T-AATATAATTAATA-TAAATATATA
* *
62678862 TATTATAA--AA-ATAAA-ATTTA
1 TAATATAATTAATATAAATATATA
*
62678882 TAAAATAATTTAATTATAAATA-ATA
1 TAATATAA-TTAA-TATAAATATATA
* * *
62678907 TAATTATAATTATTTTTAAACATATA
1 TAA-TATAATTA-ATATAAATATATA
* *
62678933 TATTATATTTAATATAAA-ATATA
1 TAATATAATTAATATAAATATATA
62678956 -AATTTATAATTAAT-T-AAT-T-TA
1 TAA--TATAATTAATATAAATATATA
62678977 TAA-AT-ATT-ATAT--ATATATA
1 TAATATAATTAATATAAATATATA
* *
62678996 TAATAT--TT-ATAT--ATTTTTA
1 TAATATAATTAATATAAATATATA
* *
62679015 T-AT-TAATT-A-ATAATTTTATA
1 TAATATAATTAATATAAATATATA
*
62679035 TAATATATATATAATATAATAAATATA
1 TAATATA-AT-TAATATAA-ATATATA
*
62679062 TAATATAATATTAAT-T-AATATTTA
1 TAATAT-A-ATTAATATAAATATATA
* * *
62679086 TATTATAAGTT-AT-TTATTATATA
1 TAATATAA-TTAATATAAATATATA
* *
62679109 TTATATAAATTAAATATAAAAATA-A
1 TAATAT-AATT-AATATAAATATATA
62679134 TAATAT
1 TAATAT
62679140 TTATTATTAT
Statistics
Matches: 2077, Mismatches: 342, Indels: 808
0.64 0.11 0.25
Matches are distributed among these distances:
17 8 0.00
18 18 0.01
19 84 0.04
20 126 0.06
21 166 0.08
22 268 0.13
23 361 0.17
24 308 0.15
25 276 0.13
26 206 0.10
27 114 0.05
28 51 0.02
29 50 0.02
30 39 0.02
31 2 0.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TAATATAATTAATATAAATATATA
Found at i:62678552 original size:81 final size:76
Alignment explanation
Indices: 62678473--62678750 Score: 186
Period size: 76 Copynumber: 3.7 Consensus size: 76
62678463 ATTGATATAA
* * * *
62678473 AGTTATATAT-TTA-ATAAATTATATATTATTATT-ATTATATAATATTCTTTATATTAATAATA
1 AGTTATATATAATATATAAATTATATAATA-AATTAATTATATAATA-T-ATTATA--AAT-ATA
62678535 TATATTTAAAATAATAT
60 TATATTTAAAATAATAT
62678552 AGTTATATATAATATATAAATTATATAATAAATTAATTATATAATATATTATAAATATATATATT
1 AGTTATATATAATATATAAATTATATAATAAATTAATTATATAATATATTATAAATATATATATT
62678617 T-AAAT--TAT
66 TAAAATAATAT
* * ** * * *
62678625 A-TTATATAATAAAATATATA-TATA-AATATTTTATTTATATAATTATAATTATATACA-ATA-
1 AGTTATAT-ATAATATATAAATTATATAATAAATTAATTATATAA-TAT-ATTATAAATATATAT
*
62678685 ATTTAATATAATAAT
63 ATTTAAAATAAT-AT
* * * * * *
62678700 ATTTA-ATAATAATATTTAATTTAT-TTATATATTAAATATTATAATTATATT
1 AGTTATAT-ATAATATATAAATTATATAATAAATTAATTA-TATAA-TATATT
62678751 TAATTTTAAA
Statistics
Matches: 165, Mismatches: 20, Indels: 31
0.76 0.09 0.14
Matches are distributed among these distances:
71 19 0.12
72 19 0.12
73 22 0.13
74 1 0.01
75 18 0.11
76 28 0.17
77 12 0.07
79 15 0.09
80 6 0.04
81 25 0.15
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (76 bp):
AGTTATATATAATATATAAATTATATAATAAATTAATTATATAATATATTATAAATATATATATT
TAAAATAATAT
Found at i:62678614 original size:54 final size:50
Alignment explanation
Indices: 62677676--62678651 Score: 95
Period size: 50 Copynumber: 19.2 Consensus size: 50
62677666 TATAATTTTA
* * * * *
62677676 TATATAATATAA-TATTTATATAATATATATATATATTATTTATTATATATAT
1 TATATAATA-AATTAATTATATAATATAT-TTTATA-TATATAATATATAAAT
*
62677728 TAT-T-ATAATATTAA-TA-ATAATATA-ATTATA-ATATAATA-ATAAAT
1 TATATAATAA-ATTAATTATATAATATATTTTATATATATAATATATAAAT
* * * *
62677772 TATATTATTATATT-ATAATATAA-AAATTAATTATATATATAATATAATAAAT
1 TATA-TAATAAATTAATTATATAATATATT--TTATATATATAATAT-ATAAAT
* * * * *
62677824 TATA-ATTAATATTAA-TAAATAATATATATAAT-TA-ATTATATA-AATAT
1 TATATAATAA-ATTAATTATATAATATATTTTATATATATAATATATAA-AT
* * * * *
62677871 TATTATATTAAA-TATTTATATATTA-AATTAATTATATATAATA-ATAAA-
1 TA-TATAATAAATTAATTATATAATATATTTTA-TATATATAATATATAAAT
* * * *
62677919 -ATTTAATATAA--AA-TATATAATATAATTTA-ATTATTAAAATATATAATT
1 TATATAATA-AATTAATTATATAATATATTTTATA-TA-TATAATATATAAAT
* *
62677967 TATAAAATAATATAATAATATAATATAATTAAATTTAATATATATATAATAT-T-AAT
1 TATATAATAA-AT--TAAT-T-ATATAA-TATATTT--TATATATATAATATATAAAT
* * * *
62678023 AATATATATAAATTAATAATA-AATAATATTATTAT-TA-ATATTATTATATTAT
1 TATATA-ATAAATTAATTATATAAT-ATATT-TTATATATATAATA-TATA-AAT
*
62678075 TATATTAA-AATTATTAATTATTATTAA-AT-TCTATTATATATATAAATTATATTAAAA
1 TATA-TAATAA--ATTAATTA-TA-TAATATAT-T-TTATATATAT-AA-TATA-TAAAT
* ** *
62678132 TATAAAATAAAATATTATATT-TATAATATATTAAATATA-ATTAAAATTATAATAT
1 TATATAAT--AA-ATTA-ATTATATAATATATTTTATATATA-TAATA-TATAA-AT
* * * * * *
62678187 TAATAAAAAAAAATAATTATTATAA-ATATTATAT-TAT-TATTATATTAAT
1 T-ATATAATAAATTAATTA-TATAATATATTTTATATATATAATATATAAAT
* ** * ** **
62678236 TAAATAATATTTTAAAT-TA-AAT-TATTAAATATATATAAATATTATTTAT
1 TATATAATAAATTAATTATATAATATATTTTATATATAT-AATA-TATAAAT
* *
62678285 ATATATAATATATTAATTATAT-ATATAATTATTAATAAATATAATA-ATAAAAT
1 -TATATAATAAATTAATTATATAATAT-ATT-TT-ATATATATAATATAT-AAAT
* * * *
62678338 TA-ATTATTATATATAA-TACATAATTATATATTCTAATTATATATAATAAAT-AAT
1 TATA-TAATAAAT-TAATTATATAA-TATAT-TT-T-A-TATATATAATATATAAAT
* * * * *
62678392 TATTTTAT-AATTAATAATATAA-AAATTATAATATATATAATATAATTAATAT
1 TATATAATAAATTAATTATATAATATATT-TTATATATATAATAT-A-TAA-AT
*
62678444 AAATATATAATAATTATTAATTGATAT-A-A-A-GTTATATAT-T--TA-ATAAAT
1 ---TATATAATAA--ATTAATT-ATATAATATATTTTATATATATAATATATAAAT
* * *
62678492 TATATATTATTATT-ATTATATAATAT-TCTTTATAT-TAATAATATAT-ATT
1 TATATAATA-AATTAATTATATAATATAT-TTTATATAT-ATAATATATAAAT
* * ** * *
62678541 TAAAATAATATAGTT-A-TATATAATATA-TAAAT-TATATAATAAATTAAT
1 T-ATATAATA-AATTAATTATATAATATATTTTATATATATAATATATAAAT
* * * * *
62678589 TATATAATATATT-A-TAAAT-ATATATATTTAAATTATATTATATAATAAAA
1 TATATAATAAATTAATTATATAATATAT-TTTATA-TATATAATAT-ATAAAT
62678639 TATATATATAAAT
1 TATATA-ATAAAT
62678652 ATTTTATTTA
Statistics
Matches: 675, Mismatches: 118, Indels: 263
0.64 0.11 0.25
Matches are distributed among these distances:
42 4 0.01
43 4 0.01
44 13 0.02
45 40 0.06
46 44 0.07
47 48 0.07
48 55 0.08
49 72 0.11
50 76 0.11
51 37 0.05
52 55 0.08
53 42 0.06
54 44 0.07
55 40 0.06
56 38 0.06
57 24 0.04
58 25 0.04
59 13 0.02
60 1 0.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (50 bp):
TATATAATAAATTAATTATATAATATATTTTATATATATAATATATAAAT
Found at i:62678632 original size:33 final size:32
Alignment explanation
Indices: 62678586--62678679 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 32
62678576 ATAATAAATT
*
62678586 AATTATATAATATATTATAAATATATATATTTA
1 AATTATATTATATATTATAAATATATATA-TTA
* *
62678619 AATTATATTATATAATA-AAATATATATATAA
1 AATTATATTATATATTATAAATATATATATTA
* *
62678650 ATATTTTATTTATATAATTATAATTATATA
1 A-ATTATA-TTATAT-ATTATAAATATATA
62678680 CAATAATTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
31 3 0.06
32 16 0.31
33 21 0.41
34 3 0.06
35 8 0.16
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (32 bp):
AATTATATTATATATTATAAATATATATATTA
Found at i:62678665 original size:2 final size:2
Alignment explanation
Indices: 62678555--62678653 Score: 51
Period size: 2 Copynumber: 55.5 Consensus size: 2
62678545 ATAATATAGT
* *
62678555 TA TA TA TA -A TA TA TA AA T- TA TA TA -A TA AA T- TA -A T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
62678591 TA TA -A TA TA T- TA TA AA TA TA TA TA TT TA AA T- TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
62678629 TA TA -A TA -A AA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
62678654 TTTATTTATA
Statistics
Matches: 72, Mismatches: 13, Indels: 24
0.66 0.12 0.22
Matches are distributed among these distances:
1 12 0.17
2 60 0.83
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:62678759 original size:25 final size:25
Alignment explanation
Indices: 62678691--62678773 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
62678681 AATAATTTAA
* *
62678691 TATAATAATATTTAATAAT-AATAT
1 TATAATTATATTTAATATTAAATAT
62678715 T-TAATT-TATTTATATATTAAATAT
1 TATAATTATATTTA-ATATTAAATAT
*
62678739 TATAATTATATTTAATTTTAAATAT
1 TATAATTATATTTAATATTAAATAT
* *
62678764 AATTATTATA
1 TATAATTATA
62678774 ATAATAATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
22 6 0.12
23 8 0.16
24 7 0.14
25 23 0.46
26 6 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TATAATTATATTTAATATTAAATAT
Found at i:62678784 original size:25 final size:25
Alignment explanation
Indices: 62678668--62678920 Score: 66
Period size: 25 Copynumber: 10.4 Consensus size: 25
62678658 TTTATATAAT
* *
62678668 TATAATTA-TAT-ACAATAATTTAA
1 TATAATTATTATAATAATAATTAAA
62678691 TATAATAATATT-TAATAATAA-T--A
1 TATAAT--TATTATAATAATAATTAAA
*
62678714 TTTAATTTATT-T-AT-AT-ATTAAA
1 TATAA-TTATTATAATAATAATTAAA
* * * *
62678736 TATTATAATTATATTTAAT-TTTAAA
1 TATAATTATTATA-ATAATAATTAAA
62678761 TATAATTATTATAATAATAATT-AA
1 TATAATTATTATAATAATAATTAAA
* * *
62678785 T-TAATTGTTAATTAAAAATAATT-AT
1 TATAATTATT-A-TAATAATAATTAAA
62678810 TAT-ATTATTAATTAATAATAATT--A
1 TATAATTATT-A-TAATAATAATTAAA
*
62678834 T-TAATAAATT-TAATAAT-ATTAAA
1 TATAAT-TATTATAATAATAATTAAA
* *
62678857 TAATATATTATAAAAATAA-AATTTATAA
1 T-ATA-ATTATTATAATAATAA-TTA-AA
* *
62678885 AATAATTTAATTAT-A-AATAATATAAT
1 TATAA-TT-ATTATAATAATAAT-TAAA
62678911 TATAATTATT
1 TATAATTATT
62678921 TTTAAACATA
Statistics
Matches: 173, Mismatches: 26, Indels: 61
0.67 0.10 0.23
Matches are distributed among these distances:
19 1 0.01
20 3 0.02
21 9 0.05
22 17 0.10
23 21 0.12
24 16 0.09
25 63 0.36
26 25 0.14
27 13 0.08
28 5 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
TATAATTATTATAATAATAATTAAA
Found at i:62678811 original size:28 final size:28
Alignment explanation
Indices: 62678773--62678843 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 28
62678763 TAATTATTAT
* *
62678773 AATAATAATTAATTAATTGTTAATTAAA
1 AATAATTATTAATTAATTATTAATTAAA
*
62678801 AATAATTATT-A-T-ATTATTAATTAAT
1 AATAATTATTAATTAATTATTAATTAAA
*
62678826 AATAATTATTAATAAATT
1 AATAATTATTAATTAATT
62678844 TAATAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
25 21 0.58
26 2 0.06
27 1 0.03
28 12 0.33
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (28 bp):
AATAATTATTAATTAATTATTAATTAAA
Found at i:62678904 original size:20 final size:21
Alignment explanation
Indices: 62678881--62678919 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
62678871 AATAAAATTT
62678881 ATAAAATAATT-TAATTATAA
1 ATAAAATAATTATAATTATAA
*
62678901 ATAATATAATTATAATTAT
1 ATAAAATAATTATAATTAT
62678920 TTTTAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAAAATAATTATAATTATAA
Found at i:62678921 original size:29 final size:30
Alignment explanation
Indices: 62678853--62678915 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
62678843 TTAATAATAT
*
62678853 TAAATAATAT-ATTATAAAAATAAAATTTA
1 TAAATAATTTAATTATAAAAATAAAATTTA
*
62678882 TAAAATAATTTAATTATAAATAATATAA-TTA
1 T-AAATAATTTAATTATAAA-AATAAAATTTA
62678913 TAA
1 TAA
62678916 TTATTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
29 1 0.03
30 10 0.34
31 12 0.41
32 6 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (30 bp):
TAAATAATTTAATTATAAAAATAAAATTTA
Found at i:62678950 original size:24 final size:24
Alignment explanation
Indices: 62678935--62678987 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
62678925 AACATATATA
*
62678935 TTATATTTAATATAAAATATAAAT
1 TTATAATTAATATAAAATATAAAT
**
62678959 TTATAATTAAT-TAATTTATAAAT
1 TTATAATTAATATAAAATATAAAT
62678982 ATTATA
1 -TTATA
62678988 TATATATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 10 0.40
24 15 0.60
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TTATAATTAATATAAAATATAAAT
Found at i:62678991 original size:2 final size:2
Alignment explanation
Indices: 62678975--62679072 Score: 51
Period size: 2 Copynumber: 55.5 Consensus size: 2
62678965 TTAATTAATT
* * * *
62678975 TA TA AA TA T- TA TA TA TA TA TA TA -A TA TT TA TA TA TT TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
62679015 TA T- TA -A T- TA -A TA -A T- TT TA TA TA -A TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
62679049 TA TA -A TA AA TA TA TA -A TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
62679073 TAATTAATAT
Statistics
Matches: 74, Mismatches: 9, Indels: 26
0.68 0.08 0.24
Matches are distributed among these distances:
1 13 0.18
2 61 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:62679001 original size:7 final size:7
Alignment explanation
Indices: 62678930--62679068 Score: 51
Period size: 7 Copynumber: 19.7 Consensus size: 7
62678920 TTTTAAACAT
*
62678930 ATATATT
1 ATATATA
*
62678937 ATATTTA
1 ATATATA
*
62678944 ATATAAA
1 ATATATA
62678951 ATATA-A
1 ATATATA
*
62678957 ATTTATA
1 ATATATA
62678964 AT-TAATTA
1 ATAT-A-TA
*
62678972 ATTTATA
1 ATATATA
*
62678979 A-ATATT
1 ATATATA
62678985 ATATAT-
1 ATATATA
62678991 ATATATA
1 ATATATA
*
62678998 ATAT-TT
1 ATATATA
*
62679004 ATATATTT
1 ATATA-TA
*
62679012 TTATATTA
1 ATATA-TA
62679020 AT-TAATA
1 ATAT-ATA
*
62679027 AT-T-TT
1 ATATATA
62679032 ATATAATA
1 ATAT-ATA
62679040 TATATATA
1 -ATATATA
62679048 ATATAATAA
1 ATAT-AT-A
62679057 ATATATA
1 ATATATA
62679064 ATATA
1 ATATA
62679069 ATATTAATTA
Statistics
Matches: 104, Mismatches: 13, Indels: 30
0.71 0.09 0.20
Matches are distributed among these distances:
5 3 0.03
6 22 0.21
7 46 0.44
8 23 0.22
9 10 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
ATATATA
Found at i:62679062 original size:55 final size:56
Alignment explanation
Indices: 62678928--62679159 Score: 178
Period size: 55 Copynumber: 4.1 Consensus size: 56
62678918 ATTTTTAAAC
* * * *
62678928 ATATATAT-TATATTTAATATAAAATATAAATTTATAATTAATTAATTTATA-AATATT
1 ATATATATATATAATAAATATATAATAT-AATAT-TAATTAA-TAATTTATATAATATT
** * * *
62678985 ATATATATATATAATATTTATATATTTTTATATTAATTAATAATTTTATATAATA-T
1 ATATATATATATAATAAATATATAATATAATATTAATTAATAA-TTTATATAATATT
*
62679041 ATATATA-ATATAATAAATATATAATATAATATTAATTAAT-ATTTATATTATAAGTT
1 ATATATATATATAATAAATATATAATATAATATTAATTAATAATTTATATAAT-A-TT
* * * *
62679097 ATTTATTATATATTATATAAAT-TA-AATATAAAAATAA-TAAT-ATTTAT-TATTATGT
1 ATATA-TATATA-TA-ATAAATATATAATATAATATTAATTAATAATTTATATAATAT-T
62679152 ATATATAT
1 ATATATAT
62679160 TATTAATTAT
Statistics
Matches: 143, Mismatches: 21, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
53 9 0.06
54 6 0.04
55 37 0.26
56 28 0.20
57 27 0.19
58 26 0.18
59 4 0.03
60 6 0.04
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (56 bp):
ATATATATATATAATAAATATATAATATAATATTAATTAATAATTTATATAATATT
Found at i:62679105 original size:7 final size:7
Alignment explanation
Indices: 62678980--62679115 Score: 69
Period size: 7 Copynumber: 20.4 Consensus size: 7
62678970 TAATTTATAA
62678980 ATATTAT
1 ATATTAT
62678987 ATA-TAT
1 ATATTAT
*
62678993 ATATAAT
1 ATATTAT
62679000 AT-TTAT
1 ATATTAT
*
62679006 ATATTTTT
1 ATA-TTAT
62679014 ATATTA-
1 ATATTAT
*
62679020 AT-TAAT
1 ATATTAT
*
62679026 A-ATTTT
1 ATATTAT
*
62679032 ATATAAT
1 ATATTAT
62679039 ATA-TAT
1 ATATTAT
*
62679045 ATAATAT
1 ATATTAT
*
62679052 A-ATAAAT
1 ATAT-TAT
*
62679059 ATATAAT
1 ATATTAT
*
62679066 ATAATAT
1 ATATTAT
62679073 -TAATTA-
1 AT-ATTAT
62679079 ATATT-T
1 ATATTAT
62679085 ATATTAT
1 ATATTAT
62679092 A-AGTTAT
1 ATA-TTAT
*
62679099 TTATTAT
1 ATATTAT
62679106 ATATTAT
1 ATATTAT
62679113 ATA
1 ATA
62679116 AATTAAATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 30
0.67 0.12 0.21
Matches are distributed among these distances:
5 2 0.02
6 33 0.34
7 53 0.55
8 9 0.09
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (7 bp):
ATATTAT
Found at i:62679115 original size:74 final size:72
Alignment explanation
Indices: 62678985--62679195 Score: 197
Period size: 71 Copynumber: 2.9 Consensus size: 72
62678975 TATAAATATT
* * * * *
62678985 ATATATATATATAATA-T-TTATATATTTTTA-TATTAATTAATAATTTTATATAATATATA-TA
1 ATATATA-ATATAATATTATTA-ATATTTATATTATTAATTATTTATTATATATAATATAAATTA
62679046 TAATATAATAA
64 -AATATAA-AA
*
62679057 ATATATAATATAATATTAATTAATATTTATATTA-TAAGTTATTTATTATATATTATATAAATTA
1 ATATATAATATAATATT-ATTAATATTTATATTATTAA-TTATTTATTATATATAATATAAATTA
62679121 AATATAAAA
64 AATATAAAA
* * * *
62679130 ATA-ATAATAT-TTATTATTATGTATATATATTATTAATTATTTATTATGATAT-ATTTAAA-TA
1 ATATATAATATAATATTATTA-ATATTTATATTATTAATTATTTATTAT-ATATAATATAAATTA
62679191 AATAT
64 AATAT
62679196 TATTAAATTT
Statistics
Matches: 120, Mismatches: 10, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
70 11 0.09
71 39 0.32
72 22 0.18
73 16 0.13
74 30 0.25
75 2 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (72 bp):
ATATATAATATAATATTATTAATATTTATATTATTAATTATTTATTATATATAATATAAATTAAA
TATAAAA
Found at i:62679120 original size:16 final size:16
Alignment explanation
Indices: 62678928--62679125 Score: 58
Period size: 18 Copynumber: 11.9 Consensus size: 16
62678918 ATTTTTAAAC
*
62678928 ATATATATTATAT-TT
1 ATATAAATTATATATT
* *
62678943 AATATAAAATATAAATTT
1 -ATATAAATTATATA-TT
*
62678961 ATAATTAATTA-AT-TT
1 AT-ATAAATTATATATT
62678976 ATA-AATATTATATATAT
1 ATATAA-ATTATATAT-T
62678993 ATATAATATTTATATATTTTT
1 ATATAA-A-TTATATA---TT
* *
62679014 ATATTAATTAATAATTTT
1 ATATAAATT-AT-ATATT
*
62679032 ATATAATATATATATAAT
1 ATATAA-AT-TATATATT
*
62679050 ATAATAAATATATAATATA
1 AT-ATAAAT-TAT-ATATT
*
62679069 ATATTAATTA-ATATT
1 ATATAAATTATATATT
62679084 -TAT--ATTATA-AGTT
1 ATATAAATTATATA-TT
*
62679097 AT-T-TATTATATATT
1 ATATAAATTATATATT
*
62679111 ATATAAATTAAATAT
1 ATATAAATTATATAT
62679126 AAAAATAATA
Statistics
Matches: 139, Mismatches: 18, Indels: 50
0.67 0.09 0.24
Matches are distributed among these distances:
12 5 0.04
13 5 0.04
14 19 0.14
15 12 0.09
16 19 0.14
17 9 0.06
18 35 0.25
19 22 0.16
20 4 0.03
21 8 0.06
22 1 0.01
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.51
Consensus pattern (16 bp):
ATATAAATTATATATT
Found at i:62679170 original size:67 final size:63
Alignment explanation
Indices: 62679040--62679227 Score: 148
Period size: 67 Copynumber: 2.9 Consensus size: 63
62679030 TTATATAATA
* * *
62679040 TATATATAATATAATAAATATATAATATAATATTAATTAATATTTATATTATAAGTTATTTAT
1 TATATATAATATAATAAATATAAAATATAATATTAATTAATATGTATATTATAAGTTAATTAT
* * * *
62679103 TATATATTATATAAATTAAATATAAAAATAATAATATTTATTATTATGTATATATATTA-TTAAT
1 TATATATAATAT-AA-TAAATAT-AAAAT-ATAATATTAATTAATATGTATAT-TATAAGTTAAT
62679167 TAT
61 TAT
* * * * *
62679170 T-TATTATGATATATTTAAATA-AATATTATTAAATTTTAATTAATATAATATATTATAA
1 TATA-TATAATATA-ATAAATATAA-AATA-T-AATATTAATTAATAT-GTATATTATAA
62679228 ATAACAAAAA
Statistics
Matches: 99, Mismatches: 15, Indels: 19
0.74 0.11 0.14
Matches are distributed among these distances:
63 11 0.11
64 5 0.05
65 10 0.10
66 29 0.29
67 40 0.40
68 4 0.04
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (63 bp):
TATATATAATATAATAAATATAAAATATAATATTAATTAATATGTATATTATAAGTTAATTAT
Found at i:62679192 original size:64 final size:67
Alignment explanation
Indices: 62679030--62679227 Score: 169
Period size: 66 Copynumber: 3.0 Consensus size: 67
62679020 ATTAATAATT
* * *
62679030 TTATATAATATATATATAATAT-AA-TAAATAT-ATAAT-ATAATATTAATTAATATTTATATTA
1 TTAT-TAAT-TATATATTATATAAATTAAATATAAAAATAATAATATTAATTAATATGTATATTA
62679091 TAAG
64 TAAG
* * *
62679095 TTATTTATTATATATTATATAAATTAAATATAAAAATAATAATATTTATTATTATGTATA-TAT-
1 TTATTAATTATATATTATATAAATTAAATATAAAAATAATAATATTAATTAATATGTATATTATA
62679158 A-
66 AG
* * * * * * *
62679159 TTATTAATTATTTATTATGATATATTTAAATA-AATATTATTAAATTTTAATTAATATAATATAT
1 TTATTAATTATATATTAT-ATA-AATTAAATATAAAAATAAT-AATATTAATTAATAT-GTATAT
62679223 TATAA
62 TATAA
62679228 ATAACAAAAA
Statistics
Matches: 107, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
63 11 0.10
64 21 0.20
65 21 0.20
66 27 0.25
67 23 0.21
68 3 0.03
69 1 0.01
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (67 bp):
TTATTAATTATATATTATATAAATTAAATATAAAAATAATAATATTAATTAATATGTATATTATA
AG
Found at i:62679294 original size:9 final size:9
Alignment explanation
Indices: 62679282--62679491 Score: 54
Period size: 9 Copynumber: 23.7 Consensus size: 9
62679272 AATTTAAAAA
62679282 ATTATTAAT
1 ATTATTAAT
*
62679291 ATTAATAAAT
1 ATT-ATTAAT
62679301 ATTA-TAAT
1 ATTATTAAT
*
62679309 AATATATAA-
1 ATTAT-TAAT
62679318 ATTA--AAT
1 ATTATTAAT
62679325 A-TATT-AT
1 ATTATTAAT
62679332 ATTATTATAT
1 ATTATTA-AT
* *
62679342 ATATTTTATT
1 AT-TATTAAT
62679352 AATTA-TAAT
1 -ATTATTAAT
*
62679361 TTTATTAAT
1 ATTATTAAT
* **
62679370 AATATTTTT
1 ATTATTAAT
62679379 AATTATTATAT
1 -ATTATTA-AT
* *
62679390 AATAATAA-
1 ATTATTAAT
*
62679398 ATAATTAAT
1 ATTATTAAT
62679407 AATT-TTAAATT
1 -ATTATT-AA-T
*
62679418 ATTATTTAT
1 ATTATTAAT
*
62679427 ATTATTTAT
1 ATTATTAAT
62679436 ATT-TT-A-
1 ATTATTAAT
62679442 ATTA--AAT
1 ATTATTAAT
* *
62679449 ATAATAAAT
1 ATTATTAAT
*
62679458 ATATATAAAT
1 AT-TATTAAT
62679468 ATTTATTAAT
1 A-TTATTAAT
*
62679478 TTTATTAAT
1 ATTATTAAT
62679487 -TTATT
1 ATTATT
62679492 TATAATATAT
Statistics
Matches: 148, Mismatches: 27, Indels: 53
0.65 0.12 0.23
Matches are distributed among these distances:
6 8 0.05
7 8 0.05
8 25 0.17
9 48 0.32
10 48 0.32
11 11 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
ATTATTAAT
Found at i:62679338 original size:17 final size:17
Alignment explanation
Indices: 62679318--62679352 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
62679308 TAATATATAA
62679318 ATTAAATATATTATATT
1 ATTAAATATATTATATT
* *
62679335 ATTATATATATTTTATT
1 ATTAAATATATTATATT
62679352 A
1 A
62679353 ATTATAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTAAATATATTATATT
Found at i:62679350 original size:14 final size:13
Alignment explanation
Indices: 62679333--62679377 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
62679323 ATATATTATA
62679333 TTATTATATATATT
1 TTATTA-ATATATT
62679347 TTATTAATTATAATT
1 TTATTAA-TAT-ATT
62679362 TTATTAATAATATT
1 TTATTAAT-ATATT
62679376 TT
1 TT
62679378 TAATTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.04
14 15 0.54
15 12 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTATTAATATATT
Found at i:62679362 original size:15 final size:15
Alignment explanation
Indices: 62679339--62679453 Score: 65
Period size: 15 Copynumber: 7.4 Consensus size: 15
62679329 TATATTATTA
62679339 TATATATTTTATTAAT
1 TATA-ATTTTATTAAT
62679355 TATAATTTTATTAAT
1 TATAATTTTATTAAT
* * *
62679370 AATATTTTTAATTATT
1 TATAATTTT-ATTAAT
* * *
62679386 ATATAATAATAAATAAT
1 -TATAAT-TTTATTAAT
62679403 TAATAATTTTA--AAT
1 T-ATAATTTTATTAAT
* *
62679417 TATTATTTATATTATT
1 TATAATTT-TATTAAT
*
62679433 TAT-ATTTTAATTAAA
1 TATAATTTT-ATTAAT
62679448 TATAAT
1 TATAAT
62679454 AAATATATAT
Statistics
Matches: 75, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
13 6 0.08
14 7 0.09
15 29 0.39
16 19 0.25
17 13 0.17
18 1 0.01
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTTTATTAAT
Found at i:62679374 original size:48 final size:46
Alignment explanation
Indices: 62679322--62679453 Score: 121
Period size: 48 Copynumber: 2.8 Consensus size: 46
62679312 ATATAAATTA
*
62679322 AATATATTATATTATTATATATATTTTATTAATTATAATTTTATTAAT
1 AATATATTATATTATTATATATATTTAATTAATTATAATTTTA--AAT
* * *
62679370 AATAT-TTTTAATTATTATATA-ATAATAAATAATTAATAATTTTAAAT
1 AATATATTAT-ATTATTATATATAT-TTAATTAATT-ATAATTTTAAAT
* *
62679417 TAT-TATTTATATTATT-TATAT-TTTAATTAAATATAAT
1 AATATA-TTATATTATTATATATATTTAATTAATTATAAT
62679454 AAATATATAT
Statistics
Matches: 69, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
44 5 0.07
45 7 0.10
46 6 0.09
47 16 0.23
48 26 0.38
49 9 0.13
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (46 bp):
AATATATTATATTATTATATATATTTAATTAATTATAATTTTAAAT
Found at i:62679465 original size:10 final size:10
Alignment explanation
Indices: 62679444--62679515 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
62679434 ATATTTTAAT
62679444 TAAATATA-A
1 TAAATATATA
62679453 TAAATATATA
1 TAAATATATA
*
62679463 TAAATATTTA
1 TAAATATATA
* *
62679473 TTAAT-TTTA
1 TAAATATATA
* * *
62679482 TTAATTTATT
1 TAAATATATA
62679492 TATAATATAT-
1 TA-AATATATA
62679502 TATAATATATA
1 TA-AATATATA
62679513 TAA
1 TAA
62679516 TTTTTATAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
9 17 0.32
10 28 0.53
11 8 0.15
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TAAATATATA
Found at i:62679521 original size:28 final size:28
Alignment explanation
Indices: 62679480--62679545 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 28
62679470 TTATTAATTT
62679480 TATTAATTTATTTATAATATA-TTATAAT-A
1 TATTAA-TT-TTTATAATATACTT-TAATAA
62679509 TATATAATTTTTATAATATACTTTAATAA
1 TAT-TAATTTTTATAATATACTTTAATAA
62679538 TATTAATT
1 TATTAATT
62679546 AATTAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
28 20 0.59
29 11 0.32
30 3 0.09
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (28 bp):
TATTAATTTTTATAATATACTTTAATAA
Found at i:62679521 original size:40 final size:41
Alignment explanation
Indices: 62679450--62679540 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 41
62679440 TAATTAAATA
* *
62679450 TAATAAATATATATAAATATTTATTAATTTTATTAATTTA-TT
1 TAAT-AATATATATAAATATATATTAATTTTA-TAATATACTT
62679492 T-ATAATATAT-TATAATATATA-TAATTTTTATAATATACTT
1 TAATAATATATATA-AATATATATTAA-TTTTATAATATACTT
62679532 TAATAATAT
1 TAATAATAT
62679541 TAATTAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
39 11 0.26
40 22 0.51
41 9 0.21
42 1 0.02
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (41 bp):
TAATAATATATATAAATATATATTAATTTTATAATATACTT
Found at i:62679537 original size:13 final size:12
Alignment explanation
Indices: 62679478--62679556 Score: 52
Period size: 13 Copynumber: 6.1 Consensus size: 12
62679468 ATTTATTAAT
* *
62679478 TTTATTAATTTA
1 TTTAATAATATA
62679490 TTT-ATAATATA
1 TTTAATAATATA
62679501 TTATAATATATATAA
1 TT-TAATA-ATAT-A
*
62679516 TTTTTATAATATA
1 -TTTAATAATATA
62679529 CTTTAATAATATTA
1 -TTTAATAATA-TA
*
62679543 ATTAATTAATATA
1 TTTAA-TAATATA
62679556 T
1 T
62679557 AATATATTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
11 8 0.15
12 4 0.08
13 19 0.36
14 15 0.28
15 5 0.09
16 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (12 bp):
TTTAATAATATA
Found at i:62679584 original size:57 final size:64
Alignment explanation
Indices: 62679481--62679633 Score: 153
Period size: 62 Copynumber: 2.5 Consensus size: 64
62679471 TATTAATTTT
* * * *
62679481 ATTAATTTATTTATAATATATTATAATATATATAATTTTTATAATATACT-T-TAATAATATTA
1 ATTAATTAATATATAATATATTATAATATATATAATTTTTATAATATACTATATAATAAAAATA
* *
62679543 ATTAATTAATATATAATATATTAT-AT-T-T-TATTTTTTA-AATATAGTATATAATAAAAATA
1 ATTAATTAATATATAATATATTATAATATATATAATTTTTATAATATACTATATAATAAAAATA
* * *
62679602 ATATAAATAATATAT-ATA-ATAATAATTTATAT
1 AT-TAATTAATATATAATATATTATAATATATAT
62679634 TTATATTTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
57 7 0.09
58 13 0.17
59 17 0.22
60 13 0.17
61 3 0.04
62 23 0.30
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.50
Consensus pattern (64 bp):
ATTAATTAATATATAATATATTATAATATATATAATTTTTATAATATACTATATAATAAAAATA
Found at i:62679625 original size:15 final size:15
Alignment explanation
Indices: 62679587--62679633 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
62679577 TTAAATATAG
*
62679587 TATATAATAAAAATA
1 TATATAATAATAATA
62679602 -ATAT-A-AATAATA
1 TATATAATAATAATA
*
62679614 TATATAATAATAATT
1 TATATAATAATAATA
62679629 TATAT
1 TATAT
62679634 TTATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 6 0.22
13 5 0.19
14 5 0.19
15 11 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TATATAATAATAATA
Found at i:62679716 original size:12 final size:12
Alignment explanation
Indices: 62679699--62679831 Score: 51
Period size: 12 Copynumber: 11.8 Consensus size: 12
62679689 TTTTAAAAAT
62679699 TAATAATATTAA
1 TAATAATATTAA
62679711 TAATAA-ATT-A
1 TAATAATATTAA
62679721 TAATATGATATTAA
1 TAATA--ATATTAA
*
62679735 T--T-TTATTAA
1 TAATAATATTAA
*
62679744 TTATAA-A-TAA
1 TAATAATATTAA
62679754 -AATATATATT-A
1 TAATA-ATATTAA
*
62679765 TTAT-ATATT--
1 TAATAATATTAA
*
62679774 TAATATTA-TATA
1 TAATAATATTA-A
*
62679786 TAATATATATAAA
1 TAATA-ATATTAA
* *
62679799 TATTAATATAAA
1 TAATAATATTAA
62679811 TAATAATA-TAA
1 TAATAATATTAA
62679822 TAATATATAT
1 TAATA-ATAT
62679832 ATTATATTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 37
0.65 0.08 0.27
Matches are distributed among these distances:
9 14 0.15
10 17 0.19
11 14 0.15
12 33 0.36
13 10 0.11
14 3 0.03
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:62679734 original size:33 final size:31
Alignment explanation
Indices: 62679697--62679820 Score: 112
Period size: 33 Copynumber: 4.0 Consensus size: 31
62679687 ATTTTTAAAA
62679697 ATTAATAATATTAATAATAAATTATAATATGAT
1 ATTAATAATATTAATAATAAA-TATAATAT-AT
** * *
62679730 ATTAATTTTATTAATTATAAATAAAATATAT
1 ATTAATAATATTAATAATAAATATAATATAT
* * *
62679761 ATTATTATATATTTAATATTATATATAATATAT
1 ATTAATA-ATA-TTAATAATAAATATAATATAT
62679794 A-T-A-AATATTAAT-ATAAATAATAATATA
1 ATTAATAATATTAATAATAAAT-ATAATATA
62679821 ATAATATATA
Statistics
Matches: 74, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
27 4 0.05
28 13 0.18
29 3 0.04
30 1 0.01
31 7 0.09
32 10 0.14
33 36 0.49
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (31 bp):
ATTAATAATATTAATAATAAATATAATATAT
Found at i:62679762 original size:2 final size:2
Alignment explanation
Indices: 62679755--62679925 Score: 67
Period size: 2 Copynumber: 95.0 Consensus size: 2
62679745 TATAAATAAA
*
62679755 AT AT AT AT -T AT -T AT AT AT TT A- AT AT -T AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
62679792 AT AT AA AT AT -T A- AT AT AA AT A- AT A- AT AT A- AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
62679828 AT AT AT -T AT AT -T TT AT ACT TT AT AT AT AT -T TT TT AT A- AT
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
* * * * *
62679867 AT AT A- AT A- AT TT AA AT AA AT AA AT AT AT AT AT A- AT -T AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
62679905 AT -T TT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
62679926 CGTAAGTGAC
Statistics
Matches: 125, Mismatches: 23, Indels: 42
0.66 0.12 0.22
Matches are distributed among these distances:
1 20 0.16
2 104 0.83
3 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:62679805 original size:61 final size:61
Alignment explanation
Indices: 62679738--62679925 Score: 160
Period size: 68 Copynumber: 3.0 Consensus size: 61
62679728 ATATTAATTT
62679738 TATTAATTATAAATAAAATATATATTATTATATATTTAATATTATATATAATATATATAAA
1 TATTAATTATAAATAAAATATATATTATTATATATTTAATATTATATATAATATATATAAA
* * * *
62679799 TATTAA-TATAAATAATAATATAATAATATATATATTATATTTTATACTTTATATATATTTTTTA
1 TATTAATTATAAATAA-AATAT-AT-AT-TAT-TA-TATATTTAATA--TTATATATAATATATA
62679863 TAATA
58 TAA-A
* *
62679868 TATAATAATT-TAAAT-AAATAAATA-TA-TATATAATTAA-ATT-T-TAT-ATATATATAAA
1 TAT--TAATTATAAATAAAATATATATTATTATATATTTAATATTATATATAATATATATAAA
62679923 TAT
1 TAT
62679926 CGTAAGTGAC
Statistics
Matches: 105, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
55 4 0.04
56 7 0.07
57 3 0.03
58 1 0.01
59 2 0.02
60 9 0.09
61 12 0.11
62 9 0.09
63 4 0.04
64 3 0.03
65 4 0.04
66 10 0.10
67 1 0.01
68 18 0.17
69 8 0.08
70 1 0.01
71 8 0.08
72 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (61 bp):
TATTAATTATAAATAAAATATATATTATTATATATTTAATATTATATATAATATATATAAA
Found at i:62679821 original size:33 final size:33
Alignment explanation
Indices: 62679702--62679839 Score: 110
Period size: 33 Copynumber: 4.2 Consensus size: 33
62679692 TAAAAATTAA
*
62679702 TAATATTAATAATAAATTATAATATGATATTAAT-T
1 TAATATTAATAAT-AA-TATAATAT-ATATAAATAT
* * *
62679737 T--TATTAATTATAA-ATAAAATATAT-ATTAT
1 TAATATTAATAATAATATAATATATATAAATAT
*
62679766 TATATATTTAATATTATATATAATATATATAAATAT
1 TA-ATA-TTAATAATA-ATATAATATATATAAATAT
* *
62679802 TAATATAAATAATAATATAATA-ATATATATAT
1 TAATATTAATAATAATATAATATATATAAATAT
62679834 T-ATATT
1 TAATATT
62679840 TTATACTTTA
Statistics
Matches: 84, Mismatches: 11, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
28 2 0.02
29 6 0.07
30 6 0.07
31 4 0.05
32 14 0.17
33 24 0.29
34 8 0.10
35 14 0.17
36 6 0.07
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (33 bp):
TAATATTAATAATAATATAATATATATAAATAT
Found at i:62679832 original size:12 final size:12
Alignment explanation
Indices: 62679745--62679832 Score: 78
Period size: 12 Copynumber: 7.7 Consensus size: 12
62679735 TTTTATTAAT
*
62679745 TATAAATAA-AA
1 TATATATAATAA
* *
62679756 TATATATTATTA
1 TATATATAATAA
* *
62679768 TATATTTAATAT
1 TATATATAATAA
62679780 TATATATAAT-A
1 TATATATAATAA
*
62679791 TATATA-AATAT
1 TATATATAATAA
62679802 TA-ATATAAATAA
1 TATATAT-AATAA
62679814 TA-ATATAATAA
1 TATATATAATAA
62679825 TATATATA
1 TATATATA
62679833 TTATATTTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
10 6 0.10
11 22 0.36
12 33 0.54
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATATAATAA
Found at i:62679839 original size:37 final size:37
Alignment explanation
Indices: 62679702--62679838 Score: 53
Period size: 39 Copynumber: 3.8 Consensus size: 37
62679692 TAAAAATTAA
* * *
62679702 TAATATTAATAATAA-ATTATAATATGATATTAATTTTAT
1 TAATATAAATAATAATATAATAATAT-ATA-T-ATTATAT
*
62679741 TAATTATAAATAA-AATAT-ATATTAT-TATA-TAT-T
1 TAA-TATAAATAATAATATAATAATATATATATTATAT
*
62679774 TAATAT---T-AT-ATATAATATATATAAATATTAATAT
1 TAATATAAATAATAATATAATA-ATATATATATT-ATAT
* *
62679808 AAATAATAATATAATAATATATATATTATAT
1 TAAT-ATAA-ATAATAATATA-ATAATATAT
62679839 TTTATACTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 32
0.65 0.07 0.28
Matches are distributed among these distances:
28 5 0.07
29 4 0.05
30 3 0.04
31 3 0.04
32 4 0.05
33 6 0.08
34 6 0.08
35 3 0.04
36 1 0.01
37 2 0.03
39 12 0.16
40 12 0.16
41 9 0.12
42 3 0.04
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.47
Consensus pattern (37 bp):
TAATATAAATAATAATATAATAATATATATATTATAT
Found at i:62680737 original size:13 final size:14
Alignment explanation
Indices: 62680696--62680740 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
62680686 AAAGGACTAA
62680696 ATCAAAATTTTATC
1 ATCAAAATTTTATC
*
62680710 ATTTAAAATTATTAT-
1 A-TCAAAATT-TTATC
62680725 ATCAAAATTTTATC
1 ATCAAAATTTTATC
62680739 AT
1 AT
62680741 TTTTGAAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 4 0.15
14 10 0.38
15 8 0.31
16 4 0.15
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (14 bp):
ATCAAAATTTTATC
Found at i:62680737 original size:16 final size:16
Alignment explanation
Indices: 62680696--62680740 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 16
62680686 AAAGGACTAA
62680696 ATCAAAATTTTATCAT
1 ATCAAAATTTTATCAT
* *
62680712 -TTAAAA--TTATTAT
1 ATCAAAATTTTATCAT
62680725 ATCAAAATTTTATCAT
1 ATCAAAATTTTATCAT
62680741 TTTTGAAGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 6
0.69 0.12 0.19
Matches are distributed among these distances:
13 6 0.27
14 5 0.23
15 5 0.23
16 6 0.27
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (16 bp):
ATCAAAATTTTATCAT
Found at i:62681185 original size:94 final size:94
Alignment explanation
Indices: 62681024--62681195 Score: 326
Period size: 94 Copynumber: 1.8 Consensus size: 94
62681014 TATAAAAAAT
*
62681024 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAGCGAGAAAGAAGATTTTGAGGTA
1 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
62681089 TTGGATTCAAATCACATAATGTGCATGTA
66 TTGGATTCAAATCACATAATGTGCATGTA
*
62681118 TTTGATATGAAAATCAAATATAACTTTGATTTAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
1 TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
62681183 TTGGATTCAAATC
66 TTGGATTCAAATC
62681196 CTATTAATCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 76 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (94 bp):
TTTGATATGAAAATCAAATATAACTTTGATTGAAATGGTATAACGAGAAAGAAGATTTTGAGGTA
TTGGATTCAAATCACATAATGTGCATGTA
Found at i:62683243 original size:153 final size:153
Alignment explanation
Indices: 62683031--62685603 Score: 3267
Period size: 153 Copynumber: 16.8 Consensus size: 153
62683021 AAGATAAATT
* * *
62683031 TTTGAGAACTTATAGCTTAACCCGATCGATTCATGCAACTAGCTAATAAATATAGCAATTAGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * * * * * *
62683096 TTCCCTAAATCTTAATTTATTACC-ATTTTATTAAAAAAAATAAACCATCGCCAATAAAATCAAG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATT-AAAAATATAAACCATCACCAACAAAATCAAG
* *
62683160 ATTAATGTGCTGCTACTATGTGTC
130 ATTAATGTGCTGCTAATATGCGTC
* * ** * *
62683184 TTTGAGAACTTATAGCTTAACTTGATCAACACATGCAACTAGCTAATAAATATAGCAATTGGGCT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * *
62683249 TCCCCTTAATCTTAAAGTATTACATCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
** * * *
62683314 TTAATGTAATACTAATATTCATC
131 TTAATGTGCTGCTAATATGCGTC
* * * * *
62683337 TTTGAGAATTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATTGCAATTGAACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * *
62683402 TCTCATTCATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
62683467 TTAACGTG-T-CATTAATATTCGTC
131 TTAATGTGCTGC--TAATATGCGTC
* * * * * *
62683490 TTTGAGAACTTATAGCTTAAATCGATTGATTC-T-C-AGTTGCTTAATAAATAATA-CAATTGAA
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGC-TAATAAAT-ATAGCAGTTGGA
* * * *
62683551 CTTCCCCTTATTCTAAAATTATTACCTCTTTTATT-AAAATAAAAACCATCACCCACAAAATCAA
64 CTTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAA
*
62683615 GATTAATGTGCTTCTAATATGCGTC
129 GATTAATGTGCTGCTAATATGCGTC
* ** * *
62683640 TTTGAGAACTTATAGCTTAACTTGATTTATTCATGCAACTAACTAATAAATACAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
62683705 T-CCCTTAATCTCAAATTATTACCACTTTTATTAAAAATGTAAACCATCACCAACAAAATTAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
62683769 TTAATGTGCTGCTCATATGTGTC
131 TTAATGTGCTGCTAATATGCGTC
* ** * * * *
62683792 TTTGAGAAATTATAGCTTAACTTAATTGATTCATGCAAATAGCTAATAAATATTGCAATT-GATC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGA-C
* * * *
62683856 TTTCCCTTAATCTCAAATTATTTCCTCTTTTATTAAAAATATAAACTATC-GCAGACAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCA-ACAAAATCAA
* * * *
62683920 GATTAATGTGCTTCTAACATGTGTT
129 GATTAATGTGCTGCTAATATGCGTC
* * * **
62683945 TTTTAGAACTTATAGCTTAACTTGATCGATTCATGCAACAAGCTAATAAATATAATAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
***
62684010 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCATTGACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
62684075 TTAATGTGCTGCTAATATGCGTC
131 TTAATGTGCTGCTAATATGCGTC
* * *
62684098 TTTGAGAACTTATAGCTTAATTCGATCGATACATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* *
62684163 TCCCCTTAATCTCAAAGTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* * * *
62684228 TTAATGTACTACTAATATACATC
131 TTAATGTGCTGCTAATATGCGTC
* * * * *
62684251 TTTAAGAACTTATAGCTTAACTCGATCGATTCGTACAACTTGCTAATAAACATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
62684316 TCCCCTTAATATCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGA-CGACAAAATCAAT
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-ACCAACAAAATCAAG
* * *
62684380 ATTAATGTGCTGTTAATATACATC
130 ATTAATGTGCTGCTAATATGCGTC
*
62684404 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * *
62684469 TCCCCTTAATCTCAAATTATTACCTTTTTTATTAAAAGTATAAACTATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* * * *
62684534 TTAATATACTACTAATATGCATC
131 TTAATGTGCTGCTAATATGCGTC
* * *
62684557 TTTGAGAAAC-TATAGCTTAACTCGATCAATTCATGCATCTAGCTAATAAATATAGCTGTTGGAC
1 TTTGAG-AACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGAC
* * * *
62684621 TTCCCCTTGATCTCAAATTATTACCTCTTTTATTAAAATTATAAACCATCAACGACAAAAATCAA
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAAC-AAAATCAA
* *
62684686 GATTAATGTGCTGTTAATATGCATAC
129 GATTAATGTGCTGCTAATATGCGT-C
* *
62684712 -TTGAGAACTTATAGCTTAACTCGATCGATTGATGCAACTAGCTAATAAATATAACAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* ** *
62684776 TCCCCTTAATCTCTAATTATTACCTCTTTTATTAAAAATATAAACCATCGA-TGAGAAAATC-AG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-ACCAACAAAATCAAG
*
62684839 TATTAATGTGCTGCTAATATGCGTA
130 -ATTAATGTGCTGCTAATATGCGTC
** * * * *
62684864 TTTTTGAACTTATAGCTTAACTCAATCAATTCATGCAACTAGCTAATAAATATAACAATTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
*
62684929 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGA-CAACAAAAATCAA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCA-TCACCAAC-AAAATCAA
*
62684993 GATTAATGTGCTGCTAATATGCATC
129 GATTAATGTGCTGCTAATATGCGTC
* * * *
62685018 TTTGAGAACTTATAGCTTAACTCGATCAATTCATGCAGCTAGCTAAAAAATATAGCAGTTGAACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * *
62685083 TCCCCTTAATCTCAAATTATTACCT-TTCTTATTAAAAAAAATAAACCATCGCCGACAAAATCAA
66 TCCCCTTAATCTCAAATTATTACCTCTT-TTATT-AAAAATATAAACCATCACCAACAAAATCAA
* ** *
62685147 GATTAAGGTATTGCTAATATGTGTC
129 GATTAATGTGCTGCTAATATGCGTC
* * * * *
62685172 TTTGAGAACCTATAGCTTAACTCGACCGATACATGTAGCTAGCTAATAAATATAGCAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* * * *
62685237 TCCCTTTACTCTCAAAGTATTACCTCTTTTATTAAAAATATAAACCATCACCCACAAAATCAAGA
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
* *
62685302 TTAATGTACTACTAATATGCGTC
131 TTAATGTGCTGCTAATATGCGTC
* * *
62685325 TTTGAAAACTTATAGCTTAACTCGATTGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACT
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
* *
62685390 TCCCTTTAATCTCAACTTATTACCTCTTTTATTAAAAATATAAACCATCACCCAA-AAAATCAAG
66 TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCA-CCAACAAAATCAAG
* *
62685454 ATTAATGTGTTGCTAATATGCATC
130 ATTAATGTGCTGCTAATATGCGTC
* * * * *
62685478 TTTGAGAACTTATAGCTTAACTTGATCGATTCATGCAATTAGATAAAAAAATATAGTAGTTGGAC
1 TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCT-AATAAATATAGCAGTTGGAC
* * * **
62685543 TTCCCCTTAATCTCAAAGTATTAACTCTTTTATTAAAAAAATAAACCATCACTGACAAAAT
65 TTCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAAT
62685604 TGTAACAACC
Statistics
Matches: 2119, Mismatches: 265, Indels: 71
0.86 0.11 0.03
Matches are distributed among these distances:
150 79 0.04
151 81 0.04
152 130 0.06
153 1360 0.64
154 447 0.21
155 22 0.01
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (153 bp):
TTTGAGAACTTATAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGCAGTTGGACT
TCCCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCACCAACAAAATCAAGA
TTAATGTGCTGCTAATATGCGTC
Found at i:62686883 original size:48 final size:48
Alignment explanation
Indices: 62686808--62687131 Score: 321
Period size: 48 Copynumber: 6.8 Consensus size: 48
62686798 TGATATGTGT
* * * *
62686808 GCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATGAGA
* * * * *
62686856 GCTAGAGTAAGACCAT-TTCTGGGACATGGCATCGGCCTCGACATGTGG
1 GCTAGTGTAAGACCATGTT-TGGGACATGGCATCGGCATTGACATGAGA
* * * * * **
62686904 GCCAGTGTAAAACCATGTTTGGAATATGGCATCGGCATTGAGACCAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATGAGA
* * * ** *
62686952 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAACATGTGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATGAGA
* * * * *
62687000 GCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGAGAAGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATGAGA
* * * *
62687048 GCTA-TGTAAGACTATGTCTGGGACATGACATCGGCCTTGACATGTA-A
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATG-AGA
*
62687095 GATAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
62687132 ATTTACCCTC
Statistics
Matches: 215, Mismatches: 57, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
47 38 0.18
48 175 0.81
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGACATGAGA
Found at i:62687106 original size:95 final size:96
Alignment explanation
Indices: 62686802--62687131 Score: 473
Period size: 96 Copynumber: 3.4 Consensus size: 96
62686792 TTTGGGTGAT
* * * *
62686802 ATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGAGACGAGAGCTAGAGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
*
62686867 ACCATTTCTGGGACATGGCATCGGCCTCGAC
66 ACCATGTCTGGGACATGGCATCGGCCTCGAC
* * * *
62686898 ATGTGGGCCAGTGTAAAACCATGTTTGGAATATGGCATCGGCATTGAGACCAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
* *
62686963 ACCATGTCTGGGACATGGCATCAGCCTCAAC
66 ACCATGTCTGGGACATGGCATCGGCCTCGAC
* *
62686994 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCATTGAGAAGAGAGCTA-TGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
* * *
62687058 ACTATGTCTGGGACATGACATCGGCCTTGAC
66 ACCATGTCTGGGACATGGCATCGGCCTCGAC
* ** *
62687089 ATGTAAGATAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
62687132 ATTTACCCTC
Statistics
Matches: 208, Mismatches: 26, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
95 70 0.34
96 138 0.66
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCGGCCTCGAC
Found at i:62689363 original size:30 final size:30
Alignment explanation
Indices: 62689327--62689386 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
62689317 AATGCTTATG
62689327 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
62689357 TTATTTTGTCATTGAATTGCCATGAATGCT
1 TTATTTTGTCATTGAATTGCCATGAATGCT
62689387 GAATGATTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (30 bp):
TTATTTTGTCATTGAATTGCCATGAATGCT
Found at i:62692638 original size:40 final size:41
Alignment explanation
Indices: 62692578--62692798 Score: 280
Period size: 40 Copynumber: 5.6 Consensus size: 41
62692568 TATTCGAATG
*
62692578 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
62692618 ATATCCGGACTAAGAT-CCGAAGGCATTTGTTCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
62692658 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
62692698 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
62692738 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
62692778 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
62692799 ATACTTGGGT
Statistics
Matches: 158, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 139 0.88
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:62693066 original size:22 final size:22
Alignment explanation
Indices: 62693026--62693067 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
62693016 GAATGTGCAT
*
62693026 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
62693048 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
62693068 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:62698610 original size:7 final size:7
Alignment explanation
Indices: 62698594--62698680 Score: 58
Period size: 7 Copynumber: 12.4 Consensus size: 7
62698584 CCAATCTTTC
62698594 TTTTTA-
1 TTTTTAT
62698600 TTTTTA-
1 TTTTTAT
62698606 TTTTTA-
1 TTTTTAT
62698612 TTTTTAT
1 TTTTTAT
*
62698619 TTATTAT
1 TTTTTAT
62698626 TTTCCTT-T
1 TTT--TTAT
62698634 ATTTTTAT
1 -TTTTTAT
*
62698642 TTATTAT
1 TTTTTAT
*
62698649 TTATTAT
1 TTTTTAT
*
62698656 TTATTAT
1 TTTTTAT
62698663 TTTATT-T
1 TTT-TTAT
62698670 TATTTTAT
1 T-TTTTAT
62698678 TTT
1 TTT
62698681 AGTTAAATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
6 18 0.26
7 38 0.55
8 8 0.12
9 5 0.07
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTAT
Found at i:62698623 original size:10 final size:10
Alignment explanation
Indices: 62698602--62698680 Score: 67
Period size: 10 Copynumber: 7.8 Consensus size: 10
62698592 TCTTTTTATT
62698602 TTTATTTTTA
1 TTTATTTTTA
62698612 TTT-TTATTTA
1 TTTATT-TTTA
**
62698622 -TTATTTTCC
1 TTTATTTTTA
62698631 TTTATTTTTA
1 TTTATTTTTA
62698641 TTTATTATTTA
1 TTTATT-TTTA
62698652 -TTATTTATTA
1 TTTATTT-TTA
62698662 TTT-TATTTTA
1 TTTAT-TTTTA
62698672 TTTTATTTT
1 -TTTATTTT
62698681 AGTTAAATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
9 7 0.12
10 34 0.61
11 14 0.25
12 1 0.02
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:62698665 original size:37 final size:35
Alignment explanation
Indices: 62698596--62698680 Score: 127
Period size: 37 Copynumber: 2.4 Consensus size: 35
62698586 AATCTTTCTT
*
62698596 TTTATTTTTATTTTTATTTTTATTTATTATTTTCC
1 TTTATTTTTATTTTTATTTTTATTTATTATTTTAC
*
62698631 TTTATTTTTATTTATTATTTATTATTTATTATTTTAT
1 TTTATTTTTATTT-TTATTT-TTATTTATTATTTTAC
62698668 TTTA-TTTTATTTT
1 TTTATTTTTATTTT
62698681 AGTTAAATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
35 14 0.30
36 14 0.30
37 18 0.39
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (35 bp):
TTTATTTTTATTTTTATTTTTATTTATTATTTTAC
Found at i:62699832 original size:118 final size:118
Alignment explanation
Indices: 62699624--62699853 Score: 397
Period size: 118 Copynumber: 1.9 Consensus size: 118
62699614 GTTTTCCATT
* * *
62699624 GTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAATCGGGGTAGGGTGCTTGGGTTGTCATTC
1 GTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
*
62699689 TACTTCGCGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCGGCTAGCCGAG
66 TACTTCGCGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCCGCTAGCCGAG
*
62699742 GTTATGAGTATAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
1 GTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
* *
62699807 TACTTCGCGTCAAAAGGTTGTGTGACGTGTTGAGTAAAACTCCGCTA
66 TACTTCGCGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCCGCTA
62699854 ATCAGAAATA
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (118 bp):
GTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTC
TACTTCGCGTCAAAAGGTTGTGTGACGTGATAAGTAAAACTCCGCTAGCCGAG
Found at i:62699990 original size:21 final size:21
Alignment explanation
Indices: 62699957--62699996 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62699947 TATTCCTAAG
* * *
62699957 TAAATAAATAATAATAAAATT
1 TAAAAAAAAAATAAAAAAATT
62699978 TAAAAAAAAAATAAAAAAA
1 TAAAAAAAAAATAAAAAAA
62699997 AGGAAAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAAAAAAAAATAAAAAAATT
Found at i:62700005 original size:16 final size:17
Alignment explanation
Indices: 62699979--62700024 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
62699969 AATAAAATTT
62699979 AAAA-AAAAAATAAA-A
1 AAAAGAAAAAATAAAGA
*
62699994 AAAAGGAAAAATAAAGA
1 AAAAGAAAAAATAAAGA
*
62700011 AAAATAAAAAATAA
1 AAAAGAAAAAATAA
62700025 GTACTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 4 0.15
16 9 0.35
17 13 0.50
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.09
Consensus pattern (17 bp):
AAAAGAAAAAATAAAGA
Found at i:62708793 original size:153 final size:153
Alignment explanation
Indices: 62708515--62709744 Score: 1158
Period size: 153 Copynumber: 8.1 Consensus size: 153
62708505 GGGTGTTACA
* * * * *
62708515 AAAATCAAGATTAATGTCCTACTAATATTCATCTTTGAG-AACTTATAGCTTAACTCGATCGATA
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAAC-TATAGCTTAACTCGATCGATT
* *
62708579 CATGCAACTAGCTAGTAAATATAGTAGTTGGACTTCCCCTTAATCTC-AATGTATTACCTCTTTT
65 CATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAAT-TATTACCTCTTTT
*
62708643 ATTAAAAATATAAAACATCACCAAC
129 ATTAAAAATATAAACCATCACCAAC
* * * * * * * * *
62708668 AAAATCAATATTAATGTACTACTAGTATGTGCCTTTGAGAAACTATAGTTTAACTTGATCGATCC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATTC
* *
62708733 ATGTATCTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
* *
62708798 TAAAAATATAAACCATTGA-CGAC
131 TAAAAATATAAACCA-TCACCAAC
* * * * * *
62708821 AAAAATCAAAATTAATGTACTGCTAATATGCATCTTTAAG-AACTTATAACTTAACTCGACCGAT
1 -AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAAC-TATAGCTTAACTCGATCGAT
* * * * * *
62708885 CCATGCATCTAGCTAATAAATATAGTAGTTGAACTTCACCTTAATCTCAAATTGTTACCTCTTTT
64 TCATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTT
* * *
62708950 ATTAAAAAAATAAATCATCACCGAC
129 ATTAAAAATATAAACCATCACCAAC
* * * * *
62708975 AAAATCAATATTAAGGTGTTGCTAATATGCGTCTTTGAGAACCTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATTC
* * ** * *
62709040 ATGTAGCTAGCTAATAAATATAGCAGTTGGACTTCCTATTAATCTTAAAGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
* *
62709105 TAAAAATATAAACCATC-GCAGTC
131 TAAAAATATAAACCATCACCA-AC
* ** *
62709128 AAAATCAAGATTAATGTGCTGCTAATATGCGTATTTGAGAATGTACAGCTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATTC
* *
62709193 ATGCAACTAGCTAATAAATATAGTAGTTGGACTCCCCCTTAATCTCAAATTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
* * *
62709258 TAAAAATATAAACCATCGTCGAGAA
131 TAAAAATATAAACCATC-ACCA-AC
* * * * ** * * *
62709283 AAAATCAAGACTAATATGCTGCTAAT-GGTCGTGTTTGAGAATTTAT-GTTTTAAATCGATCAAT
1 AAAATCAAGATTAATGTGCTGCTAATATG-CGTCTTTGAGAAACTATAG-CTTAACTCGATCGAT
* * * * * *
62709346 TCTTACAACTA-CTTAATAAATA-ATGCAATTGAACTTCCCCTTAATATGAAATTATTACCT-TT
64 TCATGCAACTAGC-TAATAAATATA-GCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTT
** * * **
62709408 TTAAAAAAAATATAAACTATCGCCGTC
127 TTATTAAAAATATAAACCATCACCAAC
* * *
62709435 AAAATTAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAATTATAACTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATTC
*
62709500 ATGCAACTAGCTAATAAATATAGCTGTTGGACTT-CCCTTAATCTC--------ACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
* *
62709556 TAAAAATATAAACCATCCCCGAC
131 TAAAAATATAAACCATCACCAAC
* * * * * * ** * * *
62709579 AAATTCAATATCAATGTGTTGCAAATGTTTGTGTTTGAG-AACTTATAGTTTAACTCGATCCATT
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAAC-TATAGCTTAACTCGATCGATT
* * * * ** * * * ** *
62709643 -GTG--ACTACCTAATAAGTATATCTTTTGAACCACTCCACTTAATCTCAAATTACGACTTC-TT
65 CATGCAACTAGCTAATAAATATAGCAGTTGGA-C-TTCCCCTTAATCTCAAATTATTACCTCTTT
* **
62709704 TATTAAAAATATAAACTATCACCGGC
128 TATTAAAAATATAAACCATCACCAAC
62709730 AAAATCAAGATTAAT
1 AAAATCAAGATTAAT
62709745 ATGCAACTAA
Statistics
Matches: 889, Mismatches: 157, Indels: 64
0.80 0.14 0.06
Matches are distributed among these distances:
141 21 0.02
142 1 0.00
143 9 0.01
144 81 0.09
151 46 0.05
152 82 0.09
153 388 0.44
154 161 0.18
155 100 0.11
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (153 bp):
AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAACTATAGCTTAACTCGATCGATTC
ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAATCTCAAATTATTACCTCTTTTAT
TAAAAATATAAACCATCACCAAC
Found at i:62709066 original size:307 final size:304
Alignment explanation
Indices: 62708515--62709782 Score: 1314
Period size: 307 Copynumber: 4.2 Consensus size: 304
62708505 GGGTGTTACA
* * * * *
62708515 AAAATCAAGATTAATGTCCTACTAATATTCATCTTTGAGAACTTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATTC
*
62708580 ATGCAACTAGCTAGTAAATATAGTAGTTGGACTTCCCCTTAATCTCAATGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAAT-TATTACCTCTTTTAT
* * * * * * * *
62708645 TAAAAATATAAAACATCACCAACAAAATCAATATTAATGTACTACTAGTATGTGCCTTTGAGAAA
130 TAAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAAC
* * *
62708710 CTATAGTTTAACTTGATCGATCCATGTATCTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAA
195 CTATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAA
*
62708775 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGACGAC
260 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCG-CGAC
* * * * *
62708821 AAAAATCAAAATTAATGTACTGCTAATATGCATCTTTAAGAACTTATAACTTAACTCGACCGATC
1 -AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATT
* * * *
62708886 CATGCATCTAGCTAATAAATATAGTAGTTGAACTTCACCTTAATCTCAAATTGTTACCTCTTTTA
65 CATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTC-AATTATTACCTCTTTTA
* * * *
62708951 TTAAAAAAATAAATCATCACCGACAAAATCAATATTAAGGTGTTGCTAATATGCGTCTTTGAGAA
129 TTAAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAA
* * **
62709016 CCTATAGCTTAACTCGATCGATACATGTAGCTAGCTAATAAATATAGCAGTTGGACTTCCTATTA
194 CCTATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTA
* * *
62709081 ATCTTAAAGTATTACCTCTTTTATTAAAAATATAAACCATCGCAGTC
259 ATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGC-GAC
* * * *
62709128 AAAATCAAGATTAATGTGCTGCTAATATGCGTATTTGAGAA-TGTACAGCTTAACTCGATCGATT
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACT-TATAACTTAACTCGATCGATT
*
62709192 CATGCAACTAGCTAATAAATATAGTAGTTGGACTCCCCCTTAATCTCAAATTATTACCTCTTTTA
65 CATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTC-AATTATTACCTCTTTTA
* * * * * * * *
62709257 TTAAAAATATAAACCATCGTCGAGAAAAAATCAAGACTAATATGCTGCTAAT-GGTCGTGTTTGA
129 TTAAAAATATAAACCATC-AC-CGACAAAATCAATATTAATGTGCTGCTAATATG-CGTCTTTGA
** * * * * ** * *
62709321 GAATTTAT-GTTTTAAATCGATCAATTCTTACAACTA-CTTAATAAATA-ATGCAATTGAACTTC
191 GAACCTATAG-TTTAACTCGATCGATACATGTAACTAGC-TAATAAATATA-GCAGTTGGACTTC
* * ** * *
62709383 CCCTTAATATGAAATTATTACCT-TTTTAAAAAAAATATAAACTATCGCCGTC
253 CCCTTAATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCG-CGAC
* * *
62709435 AAAATTAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAATTATAACTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATTC
62709500 ATGCAACTAGCTAATAAATATAGCT-GTTGGACTT-CCCTTAATCTC-------ACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAG-TAGTTGGACTTCCCCTTAATCTCAATTATTACCTCTTTTAT
* * * * * * ** *
62709556 TAAAAATATAAACCATCCCCGACAAATTCAATATCAATGTGTTGCAAATGTTTGTGTTTGAGAAC
130 TAAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAAC
* * * * * * ** * * *
62709621 TTATAGTTTAACTCGATCCAT---TGTGACTACCTAATAAGTATATCTTTTGAACCACTCCACTT
195 CTATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGA-C-TTCCCCTT
** * * * *
62709683 AATCTCAAATTACGACTTC-TTTATTAAAAATATAAACTATCACCGGC
258 AATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATC-GCGAC
* ** * * * *
62709730 AAAATCAAGATTAATATGCAACTAATATTCATCTTTAAAAACTTATAATTTAA
1 AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAA
62709783 TTTAATAACG
Statistics
Matches: 812, Mismatches: 129, Indels: 52
0.82 0.13 0.05
Matches are distributed among these distances:
293 19 0.02
294 3 0.00
295 85 0.10
296 49 0.06
297 2 0.00
298 28 0.03
305 1 0.00
306 141 0.17
307 385 0.47
308 99 0.12
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (304 bp):
AAAATCAAGATTAATGTGCTGCTAATATGCATCTTTGAGAACTTATAACTTAACTCGATCGATTC
ATGCAACTAGCTAATAAATATAGTAGTTGGACTTCCCCTTAATCTCAATTATTACCTCTTTTATT
AAAAATATAAACCATCACCGACAAAATCAATATTAATGTGCTGCTAATATGCGTCTTTGAGAACC
TATAGTTTAACTCGATCGATACATGTAACTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAAT
CTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGCGAC
Found at i:62709460 original size:460 final size:459
Alignment explanation
Indices: 62708515--62709545 Score: 1293
Period size: 460 Copynumber: 2.2 Consensus size: 459
62708505 GGGTGTTACA
* * * *
62708515 AAAATCAAGATTAATGTCCTACTAATATTCATCTTTGAGAACTTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
* * *
62708580 ATGCAACTAGCTAGTAAATATAGTAGTTGGACTTCCCCTTAATCTCAATGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTT-CCCTTAATCTCAAAGTATTACCTCTTTTAT
* * * *
62708645 TAAAAATATAAAACATCACCAACAAAATCAATATTAATGTACTACTAGTATGTGCCTTTGAGAAA
130 TAAAAATATAAAACATCACCAACAAAATCAAGATTAATGTACTACTAATATGCGCATTTGAGAAA
* * * * * *
62708710 CTATAGTTTAACTTGATCGATCCATGTATCTAGCTAATAAATATAGCAGTTGGACTTCCCCTTAA
195 CTACAGCTTAACTCGATCGATCCATGCAACTAGCTAATAAATATAGCAGTTGGACTCCCCCTTAA
* * * *
62708775 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATTGACGACAAAAATCAAAATTAATGTA
260 TCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGACGAAAAAAATCAAAACTAATATA
* * * *
62708840 CTGCTAATATGCATCTTTAAGAACTTATAACTTAACTCGACCGATCCATGCATCTAGCTAATAAA
325 CTGCTAATATGCATCTTTAAGAACTTATAACTTAAATCGACCAATCCATACAACTAGCTAATAAA
* * * * *
62708905 TATAGTAGTTGAACTTCACCTTAATCTCAAATTGTTACCTCTTTTATTAAAAAAATAAATCATCA
390 TATAGCAATTGAACTTCACCTTAATATCAAATTATTACCTCTTTTATAAAAAAAATAAATCATCA
62708970 CCGAC
455 CCGAC
* * * *
62708975 AAAATCAATATTAAGGTGTTGCTAATATGCGTCTTTGAGAACCTATAGCTTAACTCGATCGATAC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
* * * *
62709040 ATGTAGCTAGCTAATAAATATAGCAGTTGGACTTCCTATTAATCTTAAAGTATTACCTCTTTTAT
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCC-CTTAATCTCAAAGTATTACCTCTTTTAT
* * * * * *
62709105 TAAAAATATAAACCATC-GCAGTCAAAATCAAGATTAATGTGCTGCTAATATGCGTATTTGAGAA
130 TAAAAATATAAAACATCACCA-ACAAAATCAAGATTAATGTACTACTAATATGCGCATTTGAGAA
** * *
62709169 TGTACAGCTTAACTCGATCGATTCATGCAACTAGCTAATAAATATAGTAGTTGGACTCCCCCTTA
194 ACTACAGCTTAACTCGATCGATCCATGCAACTAGCTAATAAATATAGCAGTTGGACTCCCCCTTA
* *
62709234 ATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGTCGAGAAAAAATCAAGACTAATA
259 ATCTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGACGA-AAAAAATCAAAACTAATA
* * * * * * *** * * *
62709299 TGCTGCTAAT-GGTCGTGTTTGAGAATTTATGTTTTAAATCGATCAATTCTTACAACTA-CTTAA
323 TACTGCTAATATG-CATCTTTAAGAACTTATAACTTAAATCGACCAATCCATACAACTAGC-TAA
* *
62709362 TAAATA-ATGCAATTGAACTTCCCCTTAATATGAAATTATTACCT-TTTTA-AAAAAAATATAAA
386 TAAATATA-GCAATTGAACTTCACCTTAATATCAAATTATTACCTCTTTTATAAAAAAA-ATAAA
* *
62709424 -CTATCGCCGTC
449 TC-ATCACCGAC
* * * *
62709435 AAAATTAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAAATTATAACTTAACTCGATCGATTC
1 AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
*
62709500 ATGCAACTAGCTAATAAATATAGCTGTTGGACTTCCCTTAATCTCA
66 ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCTTAATCTCA
62709546 CCTCTTTTAT
Statistics
Matches: 484, Mismatches: 79, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
459 19 0.04
460 372 0.77
461 93 0.19
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (459 bp):
AAAATCAAGATTAATGTGCTGCTAATATGCGTCTTTGAGAACTTATAGCTTAACTCGATCGATAC
ATGCAACTAGCTAATAAATATAGCAGTTGGACTTCCCTTAATCTCAAAGTATTACCTCTTTTATT
AAAAATATAAAACATCACCAACAAAATCAAGATTAATGTACTACTAATATGCGCATTTGAGAAAC
TACAGCTTAACTCGATCGATCCATGCAACTAGCTAATAAATATAGCAGTTGGACTCCCCCTTAAT
CTCAAATTATTACCTCTTTTATTAAAAATATAAACCATCGACGAAAAAAATCAAAACTAATATAC
TGCTAATATGCATCTTTAAGAACTTATAACTTAAATCGACCAATCCATACAACTAGCTAATAAAT
ATAGCAATTGAACTTCACCTTAATATCAAATTATTACCTCTTTTATAAAAAAAATAAATCATCAC
CGAC
Found at i:62714615 original size:132 final size:131
Alignment explanation
Indices: 62714441--62714705 Score: 419
Period size: 132 Copynumber: 2.0 Consensus size: 131
62714431 GTTATTGAAT
62714441 TCATTGAGTCGAATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATTATAACACTTA
1 TCATTGAGTCGAATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATTATAACACTTA
62714506 CATGTGATTTTTTTATCT-A-AGTATTTTTGTCATTTATACCTTAATTTATTATAACATTTACAT
66 CATGTGATTTTTTTATCTAACAGTATTTTTG---TTTATACCTTAATTTATTATAACATTTACAT
62714569 GTGA
128 GTGA
62714573 TCATTGAGTC-ACATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATTATAACACTT
1 TCATTGAGTCGA-ATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATTATAACACTT
** * * *
62714637 ATGTGTGATTTTTTTATCTGAACATTATTTTTGTTTATACCTTAATTTCTTATAACATTTATATG
65 ACATGTGATTTTTTTATCT-AACAGTATTTTTGTTTATACCTTAATTTATTATAACATTTACATG
62714702 TGA
129 TGA
62714705 T
1 T
62714706 ATTTTTACCT
Statistics
Matches: 124, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
131 1 0.01
132 113 0.91
134 1 0.01
135 9 0.07
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.49
Consensus pattern (131 bp):
TCATTGAGTCGAATCAATAATCAGATAACTTTTATCGTTTATATCTTCATTTATTATAACACTTA
CATGTGATTTTTTTATCTAACAGTATTTTTGTTTATACCTTAATTTATTATAACATTTACATGTG
A
Found at i:62718117 original size:23 final size:24
Alignment explanation
Indices: 62718058--62718120 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
62718048 CTCTAAACTC
**
62718058 AAAAACCCTAAACCTAAAAGTATT
1 AAAAACCCTAAACCTAAAAACATT
* *
62718082 -AAAATCTTAAACCTAAAAACATT
1 AAAAACCCTAAACCTAAAAACATT
*
62718105 AAAAACCCTAACCCTA
1 AAAAACCCTAAACCTA
62718121 GGAGAGAGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.54, C:0.24, G:0.02, T:0.21
Consensus pattern (24 bp):
AAAAACCCTAAACCTAAAAACATT
Found at i:62725634 original size:16 final size:15
Alignment explanation
Indices: 62725607--62725656 Score: 73
Period size: 16 Copynumber: 3.2 Consensus size: 15
62725597 ACTGCCGGGT
*
62725607 CGGGCCGGTTCAGGC
1 CGGGCGGGTTCAGGC
62725622 CGGGCTGGGTTCAGGC
1 CGGGC-GGGTTCAGGC
62725638 CGGGGCGGGTTCAGGC
1 C-GGGCGGGTTCAGGC
62725654 CGG
1 CGG
62725657 TACGAGCTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
15 7 0.22
16 21 0.66
17 4 0.12
ACGTcount: A:0.06, C:0.28, G:0.52, T:0.14
Consensus pattern (15 bp):
CGGGCGGGTTCAGGC
Found at i:62725820 original size:12 final size:12
Alignment explanation
Indices: 62725803--62725837 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
62725793 CTAACCCGTC
62725803 TATATTAATTTT
1 TATATTAATTTT
*
62725815 TATATTATTTTT
1 TATATTAATTTT
62725827 TATA-TAATTTT
1 TATATTAATTTT
62725838 AAAATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:62725861 original size:18 final size:18
Alignment explanation
Indices: 62725838--62725875 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
62725828 ATATAATTTT
*
62725838 AAAATA-TATAAACCATCA
1 AAAATACTA-AAAACATCA
62725856 AAAATACTAAAAACATCA
1 AAAATACTAAAAACATCA
62725874 AA
1 AA
62725876 TAAATATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATACTAAAAACATCA
Found at i:62726066 original size:11 final size:11
Alignment explanation
Indices: 62726048--62726086 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
62726038 ATAATAACAA
62726048 CAAAATAATAG
1 CAAAATAATAG
*
62726059 CAACATAATAG
1 CAAAATAATAG
* *
62726070 TAAAATAGTAG
1 CAAAATAATAG
62726081 CAAAAT
1 CAAAAT
62726087 GGGGAGAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.21
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:62728245 original size:14 final size:14
Alignment explanation
Indices: 62728226--62728254 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
62728216 ATCAATATCA
62728226 AATAGAGGTAGTAT
1 AATAGAGGTAGTAT
62728240 AATAGAGGTAGTAT
1 AATAGAGGTAGTAT
62728254 A
1 A
62728255 CTTCTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (14 bp):
AATAGAGGTAGTAT
Found at i:62730211 original size:21 final size:19
Alignment explanation
Indices: 62730185--62730227 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
62730175 AGTGATTACG
*
62730185 TGTGTAAATTTAATATACATA
1 TGTGTAAA-TTAATA-AAATA
*
62730206 TGTGTATATTAATAAAATA
1 TGTGTAAATTAATAAAATA
62730225 TGT
1 TGT
62730228 TTACGTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 6 0.30
21 7 0.35
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (19 bp):
TGTGTAAATTAATAAAATA
Found at i:62739656 original size:21 final size:20
Alignment explanation
Indices: 62739590--62739656 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
62739580 AGTCAACTCA
*
62739590 TATGAGTTTCAGATTAACCCT
1 TATGAGTTTC-GTTTAACCCT
* * *
62739611 TATGGGTTTCCGTTCAGCTCC-
1 TATGAGTTT-CGTTTAAC-CCT
62739632 TATGAGCTTTCGTTTAACCCT
1 TATGAG-TTTCGTTTAACCCT
62739653 TATG
1 TATG
62739657 GGTTCCCGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
20 2 0.06
21 27 0.77
22 6 0.17
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.40
Consensus pattern (20 bp):
TATGAGTTTCGTTTAACCCT
Found at i:62739666 original size:21 final size:20
Alignment explanation
Indices: 62739603--62739668 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
62739593 GAGTTTCAGA
62739603 TTAACCCTTATGGGTTTCCGT
1 TTAACCCTTATGGG-TTCCGT
* * * *
62739624 TCAGCTCC-TATGAGCTTTCGT
1 TTAAC-CCTTATG-GGTTCCGT
62739645 TTAACCCTTATGGGTTCCCGT
1 TTAACCCTTATGGGTT-CCGT
62739666 TTA
1 TTA
62739669 GCACTTATGT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
20 5 0.15
21 25 0.76
22 3 0.09
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.41
Consensus pattern (20 bp):
TTAACCCTTATGGGTTCCGT
Found at i:62743303 original size:27 final size:28
Alignment explanation
Indices: 62743194--62743316 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
62743184 GAGATTGGCG
* * * *
62743194 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
62743223 CTAAGTGTGCGAGTTTGACTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
62743251 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
62743279 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
62743306 CTGAGTGTGCG
1 CTAAGTGTGCG
62743317 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:62743327 original size:27 final size:27
Alignment explanation
Indices: 62743219--62743329 Score: 125
Period size: 28 Copynumber: 4.0 Consensus size: 27
62743209 TAAATTGTAC
* *
62743219 AGCACTAAGTGTGCGAGTTTGACTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
* *
62743247 AGCACTAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
62743275 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
62743302 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
62743329 A
1 A
62743330 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 29 0.39
28 46 0.61
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:62744904 original size:25 final size:25
Alignment explanation
Indices: 62744876--62744927 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
62744866 AAGATTAATT
*
62744876 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCTGATATTGCCTAATAAA
* *
62744901 TGAATATCTGATATTGCTTAGTAAA
1 TGAATATCTGATATTGCCTAATAAA
62744926 TG
1 TG
62744928 TCAAGCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (25 bp):
TGAATATCTGATATTGCCTAATAAA
Found at i:62745464 original size:20 final size:19
Alignment explanation
Indices: 62745435--62745476 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
62745425 CGAAAAATGA
62745435 TTTCTAGAAAATAATTTACT
1 TTTCTAG-AAATAATTTACT
* *
62745455 TTTCTGGAAATGATTTACT
1 TTTCTAGAAATAATTTACT
62745474 TTT
1 TTT
62745477 TTGGTGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (19 bp):
TTTCTAGAAATAATTTACT
Found at i:62745582 original size:18 final size:18
Alignment explanation
Indices: 62745556--62745598 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
62745546 AAAAGTTATT
*
62745556 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
62745574 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
62745592 TTTATAT
1 TTTATAT
62745599 TTTAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:62745606 original size:13 final size:13
Alignment explanation
Indices: 62745588--62745632 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
62745578 TATATATTAA
62745588 TAAATTTATATTT
1 TAAATTTATATTT
62745601 TAAATTT-T-TTT
1 TAAATTTATATTT
62745612 AATAAATTTATATTT
1 --TAAATTTATATTT
62745627 TAAATT
1 TAAATT
62745633 GTTTTTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
11 3 0.11
12 1 0.04
13 20 0.71
14 1 0.04
15 3 0.11
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATTTATATTT
Found at i:62745613 original size:26 final size:27
Alignment explanation
Indices: 62745584--62745648 Score: 105
Period size: 26 Copynumber: 2.4 Consensus size: 27
62745574 TTTATATATA
62745584 TTAATAAATTTATATTTTAAATT-TTT
1 TTAATAAATTTATATTTTAAATTGTTT
62745610 TTAATAAATTTATATTTTAAATTGTTT
1 TTAATAAATTTATATTTTAAATTGTTT
*
62745637 TTACATATATTT
1 TTA-ATAAATTT
62745649 CAATGATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 23 0.64
27 6 0.17
28 7 0.19
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
TTAATAAATTTATATTTTAAATTGTTT
Found at i:62750263 original size:44 final size:44
Alignment explanation
Indices: 62750163--62750254 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
62750153 TGTTCAGGGA
*
62750163 TACTTCGACCTTGAGTCGATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCGACTTTGAGTCGATGAGGCACTATAAGTGTCGTACTGT
*
62750207 TACTTCGACTTTGAGTCGATGAGGCAC-AT-TGTGTGCCGTACTGT
1 TACTTCGACTTTGAGTCGATGAGGCACTATAAGTGT--CGTACTGT
62750251 TACT
1 TACT
62750255 GTTACTTTGG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 4 0.09
43 2 0.05
44 38 0.86
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.34
Consensus pattern (44 bp):
TACTTCGACTTTGAGTCGATGAGGCACTATAAGTGTCGTACTGT
Found at i:62750551 original size:23 final size:23
Alignment explanation
Indices: 62750520--62750609 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 23
62750510 GGCTTTGCCG
*
62750520 ATCAAGCACTTTATGTGTCATAT
1 ATCAGGCACTTTATGTGTCATAT
*
62750543 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCATAT
* * * **
62750566 TTTAGGCACCTCGTGTGTCAT-T
1 ATCAGGCACTTTATGTGTCATAT
* *
62750588 -TTAGGCAC-TTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCATAT
62750609 A
1 A
62750610 CTAATCATGT
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
20 8 0.15
21 9 0.17
22 1 0.02
23 36 0.67
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCATAT
Found at i:62754665 original size:25 final size:25
Alignment explanation
Indices: 62754636--62754686 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
62754626 AAGAATAATT
* *
62754636 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCTAATATTGCCTAATAAA
* *
62754661 TGAATATCTAATATTGCTTAGTAAA
1 TGAATATCTAATATTGCCTAATAAA
62754686 T
1 T
62754687 ATCAAGCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (25 bp):
TGAATATCTAATATTGCCTAATAAA
Found at i:62755332 original size:10 final size:10
Alignment explanation
Indices: 62755317--62755344 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
62755307 ATATTACATG
62755317 TTTACTTTGT
1 TTTACTTTGT
62755327 TTTACTTTGT
1 TTTACTTTGT
62755337 TTTACTTT
1 TTTACTTT
62755345 TTCCCCTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:62758552 original size:41 final size:43
Alignment explanation
Indices: 62758379--62758531 Score: 265
Period size: 43 Copynumber: 3.6 Consensus size: 43
62758369 CCGGTATTAT
** *
62758379 GCCTGCTAGGCACGAAGGCTTGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
62758422 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
62758465 GCCTGCTAGGCACGAAGGCCCGAAT--ACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
62758506 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
62758532 TAATACCAGC
Statistics
Matches: 106, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
41 41 0.39
43 65 0.61
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:62758572 original size:38 final size:38
Alignment explanation
Indices: 62758529--62758631 Score: 152
Period size: 38 Copynumber: 2.7 Consensus size: 38
62758519 GAAGGCCCGA
* * *
62758529 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
*
62758567 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
**
62758605 ATATTTTACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGG
62758632 TCTTTAAGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
Found at i:62764872 original size:25 final size:25
Alignment explanation
Indices: 62764843--62764891 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
62764833 AAAAAAGTAT
*
62764843 TTTTTATAAATTTTATATTTTAAATA
1 TTTTAATAAATTTTA-ATTTTAAATA
*
62764869 TTTTAATAATTTTTAATTTTAAA
1 TTTTAATAAATTTTAATTTTAAA
62764892 AAAATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTTAATAAATTTTAATTTTAAATA
Found at i:62765367 original size:32 final size:32
Alignment explanation
Indices: 62765331--62765394 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
62765321 CGGAACATGT
* *
62765331 TTTTTTTTCCATTATTTTCTATCAAAAATGAA
1 TTTTTTTCCCATTATTTTCTATAAAAAATGAA
62765363 TTTTTTTCCCATTATTTTCTATAAAAAATGAA
1 TTTTTTTCCCATTATTTTCTATAAAAAATGAA
62765395 AGTGAAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (32 bp):
TTTTTTTCCCATTATTTTCTATAAAAAATGAA
Found at i:62769094 original size:25 final size:27
Alignment explanation
Indices: 62769052--62769107 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
62769042 CAAGCGCGAT
* * *
62769052 TTTTTTATATTAGAATATT-TTTTTTG
1 TTTTTTAAATAAGAATATTATTTTTTA
62769078 TTTTTTAAATAAG-ATATTATTTTTTA
1 TTTTTTAAATAAGAATATTATTTTTTA
62769104 TTTT
1 TTTT
62769108 CAAATTAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (27 bp):
TTTTTTAAATAAGAATATTATTTTTTA
Found at i:62775797 original size:20 final size:19
Alignment explanation
Indices: 62775751--62775797 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 19
62775741 TACCTTTATT
62775751 TCTTCTTCTTTTTTTCTTC
1 TCTTCTTCTTTTTTTCTTC
62775770 TCCTTTCTCTCTTTTCTTTC-TC
1 T-C-TTCT-TCTTTT-TTTCTTC
62775792 TCTTCT
1 TCTTCT
62775798 GATGGGTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 5 0.21
21 5 0.21
22 9 0.38
23 4 0.17
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
TCTTCTTCTTTTTTTCTTC
Found at i:62776146 original size:27 final size:29
Alignment explanation
Indices: 62776092--62776158 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
62776082 TTTAAATATT
*
62776092 TTTAATAAAAATAAAAAAATGATATTTT-A
1 TTTAA-AAAAATAAAAAAATCATATTTTAA
*
62776121 TTTAAAAAAATAAAAAAA-CATGTTTTAA
1 TTTAAAAAAATAAAAAAATCATATTTTAA
*
62776149 TATAAAAAAA
1 TTTAAAAAAA
62776159 AAGAGTTGCG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 6 0.18
28 23 0.68
29 5 0.15
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (29 bp):
TTTAAAAAAATAAAAAAATCATATTTTAA
Found at i:62777248 original size:23 final size:21
Alignment explanation
Indices: 62777213--62777256 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
62777203 TAATAAAATT
*
62777213 AAATTTTATTTATTTATTTTTA
1 AAATTTTATTTATAT-TTTTTA
*
62777235 AAATATTTGTTTATATTTTTTA
1 AAAT-TTTATTTATATTTTTTA
62777257 TAGCTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
AAATTTTATTTATATTTTTTA
Found at i:62777455 original size:18 final size:16
Alignment explanation
Indices: 62777417--62777457 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
62777407 TTTTTTTATT
62777417 AATTTTAAAATTTTGA
1 AATTTTAAAATTTTGA
*
62777433 AATTTTAAAATATATTTA
1 AATTTTAAAAT-T-TTGA
62777451 AATTTTA
1 AATTTTA
62777458 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.50
17 1 0.05
18 10 0.45
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
AATTTTAAAATTTTGA
Found at i:62779560 original size:118 final size:118
Alignment explanation
Indices: 62779415--62779627 Score: 390
Period size: 118 Copynumber: 1.8 Consensus size: 118
62779405 TTTTACCCAA
*
62779415 CACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
1 CACGTCACACAACCTTTTGACGAGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
* *
62779480 TCAGTCACGATTTGAGCCATACTCATAACCTCGGCTAGCGGAGTTTTACTTGT
66 TCAGTCACGATCTAAGCCATACTCATAACCTCGGCTAGCGGAGTTTTACTTGT
62779533 CACGTCACACAACCTTTTGACGAGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
1 CACGTCACACAACCTTTTGACGAGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
*
62779598 TCAGTCACGATCTAAGCTATACTCATAACC
66 TCAGTCACGATCTAAGCCATACTCATAACC
62779628 ATGGAAAACT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 91 1.00
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (118 bp):
CACGTCACACAACCTTTTGACGAGAAGTAGAATGACAACCCAAGCACCCTACCCCGGTTACTCAG
TCAGTCACGATCTAAGCCATACTCATAACCTCGGCTAGCGGAGTTTTACTTGT
Found at i:62780164 original size:17 final size:17
Alignment explanation
Indices: 62780142--62780175 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
62780132 GGAGAAAAAA
62780142 AAGTTTAGAAAAACTCC
1 AAGTTTAGAAAAACTCC
62780159 AAGTTTAGAAAAACTCC
1 AAGTTTAGAAAAACTCC
62780176 CCATGTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
AAGTTTAGAAAAACTCC
Found at i:62787104 original size:27 final size:26
Alignment explanation
Indices: 62787074--62787135 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
62787064 AGATAATTAA
62787074 AATAAAATCCTAAAT-TTGAATAATCCT
1 AATAAAAT-CTAAATATT-AATAATCCT
* * *
62787101 AATAATGATCTTAATATTAATTATCCT
1 AATAA-AATCTAAATATTAATAATCCT
62787128 AATAAAAT
1 AATAAAAT
62787136 AAAATAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 2 0.07
27 23 0.79
28 4 0.14
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.37
Consensus pattern (26 bp):
AATAAAATCTAAATATTAATAATCCT
Found at i:62788222 original size:18 final size:18
Alignment explanation
Indices: 62788199--62788235 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
62788189 TGGAATAGTT
*
62788199 TGTATAATAACATCAAAA
1 TGTATAAAAACATCAAAA
*
62788217 TGTATAAAAATATCAAAA
1 TGTATAAAAACATCAAAA
62788235 T
1 T
62788236 AAAGCTTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (18 bp):
TGTATAAAAACATCAAAA
Found at i:62788662 original size:5 final size:5
Alignment explanation
Indices: 62788652--62788679 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
62788642 CATTTTTGTG
62788652 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
62788680 GAACACACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Done.