Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 197 of 290
Found at i:63080069 original size:30 final size:30
Alignment explanation
Indices: 63080028--63080093 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
63080018 ACGGTCTGTA
* *
63080028 ACACGGACGTGTCTGGTAGCCGTGTGAGGT
1 ACACGGACGTGTCCGGTAGCCGTGTGAGGC
*
63080058 ACACGGGCGTGTCCGGTAGCCGTGTGAGGC
1 ACACGGACGTGTCCGGTAGCCGTGTGAGGC
63080088 ACACGG
1 ACACGG
63080094 CCTGTTCACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.17, C:0.24, G:0.41, T:0.18
Consensus pattern (30 bp):
ACACGGACGTGTCCGGTAGCCGTGTGAGGC
Found at i:63082921 original size:28 final size:29
Alignment explanation
Indices: 63082870--63082924 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
63082860 TATAAGGGTT
63082870 TTCACACGGCCAAGCACACACCCGTGTCC
1 TTCACACGGCCAAGCACACACCCGTGTCC
* * *
63082899 TTCACACTGCCTAG-ACACGCCCGTGT
1 TTCACACGGCCAAGCACACACCCGTGT
63082925 GGTTGTCCGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.22, C:0.42, G:0.18, T:0.18
Consensus pattern (29 bp):
TTCACACGGCCAAGCACACACCCGTGTCC
Found at i:63084731 original size:37 final size:37
Alignment explanation
Indices: 63084681--63084759 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63084671 TTATTACGAA
* * *
63084681 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
63084718 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
63084755 GTCTT
1 GTCTT
63084760 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:63084956 original size:47 final size:47
Alignment explanation
Indices: 63084878--63085214 Score: 539
Period size: 47 Copynumber: 7.1 Consensus size: 47
63084868 CCATTCGGGA
* * * * *
63084878 CTTATCACATTTATACACTTTAACATCCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63084925 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63084972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63085019 CCTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63085068 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63085115 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63085164 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63085211 CTTA
1 CTTA
63085215 CTATCATTTC
Statistics
Matches: 270, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 178 0.66
49 92 0.34
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63085176 original size:143 final size:141
Alignment explanation
Indices: 63084878--63085214 Score: 539
Period size: 143 Copynumber: 2.4 Consensus size: 141
63084868 CCATTCGGGA
* * * * * * * *
63084878 CTTATCACATTTATACACTTTAACATCCATCACATCGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
63084943 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
63085008 GGCCATTAGGC
131 GGCCATTAGGC
* *
63085019 CCTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63085084 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
63085149 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
*
63085164 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
63085215 CTATCATTTC
Statistics
Matches: 180, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
141 7 0.04
143 127 0.71
145 46 0.26
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:63085214 original size:96 final size:96
Alignment explanation
Indices: 63084878--63085211 Score: 564
Period size: 96 Copynumber: 3.5 Consensus size: 96
63084868 CCATTCGGGA
* * * * * *
63084878 CTTATCACATTTATACACTTTAACATCCATCACATCGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
63084941 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
63084972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
63085037 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
63085068 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
63085133 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
63085164 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
63085212 TTACTATCAT
Statistics
Matches: 226, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 56 0.25
96 170 0.75
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63090767 original size:30 final size:30
Alignment explanation
Indices: 63090731--63090797 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
63090721 GTTGTCCCAA
*
63090731 CCCTTTTCATAGCTCAATAGCCCAAGCTAT
1 CCCTTTTCACAGCTCAATAGCCCAAGCTAT
* * **
63090761 CCCTTTTCACAGGTTAATAGCTGAAGCTAT
1 CCCTTTTCACAGCTCAATAGCCCAAGCTAT
63090791 CCTCTTT
1 CC-CTTT
63090798 CATTATTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 27 0.87
31 4 0.13
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (30 bp):
CCCTTTTCACAGCTCAATAGCCCAAGCTAT
Found at i:63090823 original size:30 final size:30
Alignment explanation
Indices: 63090789--63090867 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
63090779 AGCTGAAGCT
63090789 ATCCTCTTTCATTATTTGATGGTCGTCACC
1 ATCCTCTTTCATTATTTGATGGTCGTCACC
* *
63090819 ATCCTTTTTCATT-GTTGATGGTCGTCACC
1 ATCCTCTTTCATTATTTGATGGTCGTCACC
*
63090848 ATCC-CTTTTCATAATTTGAT
1 ATCCTC-TTTCATTATTTGAT
63090868 AGCTGAAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.46
Consensus pattern (30 bp):
ATCCTCTTTCATTATTTGATGGTCGTCACC
Found at i:63090959 original size:29 final size:29
Alignment explanation
Indices: 63090795--63090978 Score: 111
Period size: 30 Copynumber: 6.2 Consensus size: 29
63090785 AGCTATCCTC
* *
63090795 TTTCATTATTTGATGGTCGTCACCATCCTT
1 TTTCATTA-TTGATGGTCATCACCATCCCT
* *
63090825 TTTCATTGTTGATGGTCGTCACCATCCCT
1 TTTCATTATTGATGGTCATCACCATCCCT
* * * * *
63090854 TTTCATAATTTGATAGCTGA-AACTATCCCT
1 TTTCATTA-TTGAT-GGTCATCACCATCCCT
** * * * *
63090884 TTTCACAATTGGATAGCCA-AAGCTATCCCT
1 TTTCATTATT-GATGGTCATCA-CCATCCCT
** * *
63090914 TTTTGTTGTTCAATGGTCATCACCATCCCT
1 TTTCATTATT-GATGGTCATCACCATCCCT
* *
63090944 TTTCATTATTGATGGTCGTCACCATCACT
1 TTTCATTATTGATGGTCATCACCATCCCT
63090973 TTTCAT
1 TTTCAT
63090979 AATTTGATAG
Statistics
Matches: 118, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
29 53 0.45
30 62 0.53
31 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.41
Consensus pattern (29 bp):
TTTCATTATTGATGGTCATCACCATCCCT
Found at i:63091001 original size:89 final size:90
Alignment explanation
Indices: 63090836--63091005 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 90
63090826 TTCATTGTTG
* * *
63090836 ATGGTCGTCACCATCCCTTTTCATAATTTGATAGCTGAAACTATCCCTTTTCACAATTGGATAGC
1 ATGGTCATCACCATCCCTTTTCATAATTTGATAGCTGAAACCATCACTTTTCACAATTGGATAGC
63090901 CAAAGCTATCCCTTTTTGTTGTTCA
66 CAAAGCTATCCCTTTTTGTTGTTCA
* * ** * *
63090926 ATGGTCATCACCATCCCTTTTCATTA-TTGAT-GGTCGTCACCATCACTTTTCATAATTTGATAG
1 ATGGTCATCACCATCCCTTTTCATAATTTGATAGCT-GAAACCATCACTTTTCACAATTGGATAG
* * *
63090989 TCGAGGCTATCCCTTTT
65 CCAAAGCTATCCCTTTT
63091006 CATTATTTTG
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
88 2 0.03
89 41 0.61
90 24 0.36
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (90 bp):
ATGGTCATCACCATCCCTTTTCATAATTTGATAGCTGAAACCATCACTTTTCACAATTGGATAGC
CAAAGCTATCCCTTTTTGTTGTTCA
Found at i:63093413 original size:79 final size:81
Alignment explanation
Indices: 63093277--63093461 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
63093267 TTGAATGATG
* *
63093277 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
63093341 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
63093356 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
63093418 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
63093436 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63093462 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:63093475 original size:40 final size:40
Alignment explanation
Indices: 63093278--63093461 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
63093268 TGAATGATGT
* * * *
63093278 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63093318 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
63093358 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
63093396 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63093437 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63093462 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63093483 original size:79 final size:79
Alignment explanation
Indices: 63093330--63093494 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
63093320 GGACTAAGAT
* * **
63093330 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
63093395 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
63093409 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
63093472 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
63093488 CCGAAGG
1 CCGAAGG
63093495 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63097291 original size:13 final size:14
Alignment explanation
Indices: 63097268--63097296 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63097258 GTAAGGTTTT
63097268 TTAATTTATTATTA
1 TTAATTTATTATTA
63097282 TTAA-TTATTATTA
1 TTAATTTATTATTA
63097295 TT
1 TT
63097297 TTTTTACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTAATTTATTATTA
Found at i:63097416 original size:5 final size:5
Alignment explanation
Indices: 63097406--63097431 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
63097396 ATCTTAGTCT
63097406 TCCCC TCCCC TCCCC TCCCC TCCCC T
1 TCCCC TCCCC TCCCC TCCCC TCCCC T
63097432 TCTCTTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.77, G:0.00, T:0.23
Consensus pattern (5 bp):
TCCCC
Found at i:63106251 original size:24 final size:25
Alignment explanation
Indices: 63106211--63106270 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
63106201 AATTTTCTCC
* *
63106211 TAAATTTT-TATTTTATTTAA-TAT
1 TAAATTTTATAATTTATTGAATTAT
*
63106234 TTAATTTTATAATTTATTGAATTAT
1 TAAATTTTATAATTTATTGAATTAT
63106259 TAATATTTTATA
1 TAA-ATTTTATA
63106271 CTAATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 7 0.23
24 10 0.33
25 5 0.17
26 8 0.27
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
TAAATTTTATAATTTATTGAATTAT
Found at i:63111914 original size:72 final size:73
Alignment explanation
Indices: 63111800--63111935 Score: 170
Period size: 72 Copynumber: 1.9 Consensus size: 73
63111790 CTCTCTAGCC
* * * *
63111800 ATATAATGGGAAGCTCACATAGAGCCATTTTGGGAAGCTCATAAA-AAGCC-TATCGAGAAGCTT
1 ATATAACGGGAAGCTCACATAGAGCCATATCGAGAAGCTCATAAAGAA-CCTTATCGAGAAGCTT
63111863 ATCCGGGTT
65 ATCCGGGTT
* * *
63111872 ATATAACGGGAAGCTCATA-AGAGCCATAATCGAGAAGTTCATAAAGAACCTTATCGGGAAGCTT
1 ATATAACGGGAAGCTCACATAGAGCCAT-ATCGAGAAGCTCATAAAGAACCTTATCGAGAAGCTT
63111936 TGGATAGCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
71 8 0.15
72 32 0.59
73 14 0.26
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (73 bp):
ATATAACGGGAAGCTCACATAGAGCCATATCGAGAAGCTCATAAAGAACCTTATCGAGAAGCTTA
TCCGGGTT
Found at i:63111930 original size:48 final size:47
Alignment explanation
Indices: 63111878--63111995 Score: 114
Period size: 48 Copynumber: 2.5 Consensus size: 47
63111868 GGTTATATAA
*
63111878 CGGGAAGCTCATAAGAGCC-ATAATCGAGAAGTTCATAAAGAACCTTAT
1 CGGGAAGCTCATAAGAGCCAAT-ATCGAGAAGTTCA-AAAGAACATTAT
* * * * * *
63111926 CGGGAAGCT-TTGGATAGCCAATATCGTGAAGTTCAAACGAGCATTAT
1 CGGGAAGCTCAT-AAGAGCCAATATCGAGAAGTTCAAAAGAACATTAT
*
63111973 CGGGAAGCTCATAAAGATCCAAT
1 CGGGAAGCTCAT-AAGAGCCAAT
63111996 TGAGCAGCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
47 19 0.35
48 34 0.62
49 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (47 bp):
CGGGAAGCTCATAAGAGCCAATATCGAGAAGTTCAAAAGAACATTAT
Found at i:63112432 original size:15 final size:15
Alignment explanation
Indices: 63112412--63112441 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63112402 TGTTTCCTCA
63112412 ATCCAATTACGTATT
1 ATCCAATTACGTATT
63112427 ATCCAATTACGTATT
1 ATCCAATTACGTATT
63112442 TAGTCTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
ATCCAATTACGTATT
Found at i:63119838 original size:13 final size:13
Alignment explanation
Indices: 63119820--63119845 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
63119810 TATCCGGGTT
63119820 AAATCCCGCAGGC
1 AAATCCCGCAGGC
63119833 AAATCCCGCAGGC
1 AAATCCCGCAGGC
63119846 TTCGTGCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AAATCCCGCAGGC
Found at i:63119884 original size:38 final size:38
Alignment explanation
Indices: 63119833--63120098 Score: 370
Period size: 38 Copynumber: 6.9 Consensus size: 38
63119823 TCCCGCAGGC
* *
63119833 AAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGGTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* *
63119871 AAATCCTGCAGGCTTCGTGCTGGTATTATATCTGGGTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* * *
63119909 AAATCCCGTAGGCTTCGTGCTGGTAATATATCCAGGTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
*
63119947 AAATCCCACAGGCTTCGTGCTGGTATTATATCCGGGCTT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG-TT
* * **
63119986 AAAGACTCGCAGGCTTCGTGCTGGTAAAATATCCGGGTT
1 AAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* *
63120025 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* *
63120063 AAATCCCGCAGGCTTAGTGCTGGTATTATATTCGGG
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGG
63120099 CCTTCGTGCC
Statistics
Matches: 203, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 165 0.81
39 10 0.05
40 28 0.14
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
Found at i:63120038 original size:116 final size:115
Alignment explanation
Indices: 63119833--63120099 Score: 383
Period size: 116 Copynumber: 2.3 Consensus size: 115
63119823 TCCCGCAGGC
* * ** *
63119833 AAATCCCGCAGGCTTCGTGCTGGTAATATATCTGGG-TTAAATCCTGCAGGCTTCGTGCTGGTAT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACTGCAGGCTTCGTGCTGGTAA
* * * *
63119897 TATATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATATATCCAGGTT
66 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCAGGAT
*
63119947 AAATCCCACAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACTCGCAGGCTTCGTGCTGGTA
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACT-GCAGGCTTCGTGCTGGTA
* * *
63120012 AAATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
65 AAATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCAGGAT
* *
63120063 AAATCCCGCAGGCTTAGTGCTGGTATTATATTCGGGC
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGC
63120100 CTTCGTGCCT
Statistics
Matches: 135, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
114 33 0.24
115 7 0.05
116 95 0.70
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (115 bp):
AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACTGCAGGCTTCGTGCTGGTAA
AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCAGGAT
Found at i:63132954 original size:46 final size:46
Alignment explanation
Indices: 63132824--63132987 Score: 163
Period size: 47 Copynumber: 3.5 Consensus size: 46
63132814 ATGCCGATGC
* *
63132824 CATGCCCCAGACATGGTCTTACACTGGCTTACATCTCAAGTCGAAG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGTCGAAG
* * * *
63132870 CCATGTCCTAGACATGGTCTTACACTGAC-TATCATCTCGTAGTAGACG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGTCGAAG
* * * *
63132918 CATGTCCCAGACAT-GTCTTACATTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GTCGAAG
* *
63132964 CATGTCCTAGGCAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
63132988 AGCACTTGTC
Statistics
Matches: 97, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.01
46 44 0.45
47 46 0.47
48 6 0.06
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGTCGAAG
Found at i:63133015 original size:93 final size:89
Alignment explanation
Indices: 63132817--63133035 Score: 219
Period size: 93 Copynumber: 2.4 Consensus size: 89
63132807 GGGTAAGATG
* *
63132817 CCGATGCCATGCCCCAGACATGGTCTTACACTGGCTTACATCTCAAGTCGAAGCCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGCCGAAGCCATGTCCTAGA
63132882 CATGGTCTTACACTGACTATCATC
66 CATGGTCTTACACTGACTATCATC
* * * * *
63132906 TCGTAGTAGACGCATGTCCCAGACAT-GTCTTACATTGGCTTACGTCTCGAGGCCGATG-CATGT
1 CCG-A-T-G-C-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAGCCGAAGCCATGT
* *
63132969 CCTAGGCAT-GTCTTACACTAGCACTTGTCTCAATC
60 CCTAGACATGGTCTTACACT-G-AC---TATC-ATC
*
63133004 CCGATGCCATGTCCCAGAAATGGTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
63133036 AGCTCTCACA
Statistics
Matches: 105, Mismatches: 12, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
89 2 0.02
90 1 0.01
91 1 0.01
92 11 0.10
93 48 0.46
94 31 0.30
95 1 0.01
96 1 0.01
97 4 0.04
98 5 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (89 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGCCGAAGCCATGTCCTAGA
CATGGTCTTACACTGACTATCATC
Found at i:63133449 original size:28 final size:29
Alignment explanation
Indices: 63133388--63133451 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
63133378 CTTCTTTGGT
* *
63133388 AAAATGACCATTTTGCCCCTAACCTTGAC
1 AAAATGACCATTTTACCCCTAACCTCGAC
* **
63133417 AAAATGACCATTTTACCCTTAGGCTCGA-
1 AAAATGACCATTTTACCCCTAACCTCGAC
63133445 AAAATGA
1 AAAATGA
63133452 TTTTTATCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 7 0.23
29 23 0.77
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (29 bp):
AAAATGACCATTTTACCCCTAACCTCGAC
Found at i:63149572 original size:46 final size:45
Alignment explanation
Indices: 63149509--63149630 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 45
63149499 CTCGAGGCTG
*
63149509 ATGCATGTCCCAAACATGTCTTACACTAGCTTTCGTC-TCAA-T-GCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGC--TC-TCAT-AAGTGGCCA
* *
63149555 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCCA
*
63149601 GTGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
63149631 ACACATATCA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 4 0.06
44 3 0.04
45 1 0.01
46 59 0.88
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCCA
Found at i:63152767 original size:30 final size:31
Alignment explanation
Indices: 63152687--63152769 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
63152677 TCAGTCTCGA
*
63152687 CATAT-ACTGGGCTGAAGTCTTTTCATAAAT
1 CATATCACTGGGCTGAAGCCTTTTCATAAAT
*
63152717 CATATCACTGGGTTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCTGAAGCCTTTTCATAAAT
*
63152748 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCTGAAGCCTTT
63152770 ACTGTAAGCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 16 0.33
31 32 0.67
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCTGAAGCCTTTTCATAAAT
Found at i:63153017 original size:25 final size:25
Alignment explanation
Indices: 63152989--63153058 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
63152979 CTCTTTTAAT
*
63152989 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
63153014 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
63153039 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
63153059 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:63153931 original size:27 final size:27
Alignment explanation
Indices: 63153870--63153946 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
63153860 GGCATATTCT
63153870 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* *
63153897 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGG
* *
63153924 TCTTTTTACC-TATTAGGGGTATT
1 TCATTTTACCATA-CAGGGGTATT
63153947 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 38 0.90
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:63154017 original size:27 final size:27
Alignment explanation
Indices: 63153987--63154094 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
63153977 GTAAATCTAC
63153987 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
63154014 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
63154040 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
63154070 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
63154095 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:63154092 original size:56 final size:55
Alignment explanation
Indices: 63153984--63154153 Score: 184
Period size: 54 Copynumber: 3.1 Consensus size: 55
63153974 TTGGTAAATC
* * *
63153984 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * * *
63154039 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** * ***
63154094 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
63154148 TACAAA
1 TACAAA
63154154 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
54 46 0.47
55 14 0.14
56 37 0.38
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (55 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:63154100 original size:27 final size:27
Alignment explanation
Indices: 63154036--63154206 Score: 143
Period size: 27 Copynumber: 6.3 Consensus size: 27
63154026 TTTCTATAAT
* *
63154036 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
63154064 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
63154091 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* * *
63154118 TTTCACAAACCAGTGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
63154145 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
* ** *
63154172 TTCTACCCTAT-AGGGGTATTTTAGTAA
1 TTTTA-CAAATCAGGGGTATTTTGGTAA
*
63154199 TTTCACAA
1 TTTTACAA
63154207 TCGAGCGTAA
Statistics
Matches: 115, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.03
27 101 0.88
28 10 0.09
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:63154201 original size:54 final size:54
Alignment explanation
Indices: 63154049--63154173 Score: 162
Period size: 54 Copynumber: 2.3 Consensus size: 54
63154039 TAGAAAGTCA
* *** * *
63154049 AGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAG
*
63154103 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG
1 AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA-TAG
*
63154158 -GGGTATTTTGGTAATT
1 AGGGTATTTCGGTAATT
63154174 CTACCCTATA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 60 0.97
55 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAG
Found at i:63154238 original size:27 final size:27
Alignment explanation
Indices: 63154205--63154296 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
63154195 GTAATTTCAC
* *
63154205 AATCGAGCGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
* *
63154232 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTTTGTA
* * *
63154259 AATCAAGGGTAAAACAATAATTTTATA
1 AATCGAGGGTAAAACAGTAATTTTGTA
63154286 AATCGAGGGTA
1 AATCGAGGGTA
63154297 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTTTGTA
Found at i:63157997 original size:40 final size:40
Alignment explanation
Indices: 63157874--63158030 Score: 142
Period size: 41 Copynumber: 3.9 Consensus size: 40
63157864 GAGCCAAAGC
** *
63157874 ATAGCCAAAGCTATTATAATCTCGCACACTAAGTGCCTTT-C
1 ATAGCCAAAGCTATTCCAAT-TCGCACACTAAGTG-CTTTAT
* * *
63157915 ATAGCCAAAGCT-TTCTCAACCTCACACACTAAGTG-TCATAT
1 ATAGCCAAAGCTATTC-CAA-TTCGCACACTAAGTGCT-TTAT
*
63157956 ATAGCCCAAGCTATTCCAATTCGCACACTAAGTGCTTTAT
1 ATAGCCAAAGCTATTCCAATTCGCACACTAAGTGCTTTAT
* * *
63157996 ATAGCCGAAGCTATCTCGAAAT-GCACACTAAGTGC
1 ATAGCCAAAGCTAT-TCCAATTCGCACACTAAGTGC
63158031 CAAACATAGT
Statistics
Matches: 96, Mismatches: 13, Indels: 15
0.77 0.10 0.12
Matches are distributed among these distances:
39 1 0.01
40 45 0.47
41 47 0.49
42 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (40 bp):
ATAGCCAAAGCTATTCCAATTCGCACACTAAGTGCTTTAT
Found at i:63171760 original size:17 final size:17
Alignment explanation
Indices: 63171728--63171760 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
63171718 TTCGTTTTTG
63171728 TTTAGTTTTTGATAATT
1 TTTAGTTTTTGATAATT
63171745 TTTATGTTTTTG-TAAT
1 TTTA-GTTTTTGATAAT
63171761 CGTTGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (17 bp):
TTTAGTTTTTGATAATT
Found at i:63175079 original size:46 final size:46
Alignment explanation
Indices: 63175029--63175204 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
63175019 TGGTTGAGCA
63175029 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63175075 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63175120 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63175168 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63175205 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63175185 original size:93 final size:93
Alignment explanation
Indices: 63175026--63175197 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
63175016 GGATGGTTGA
*
63175026 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
63175091 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63175119 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
63175183 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
63175198 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63182630 original size:46 final size:46
Alignment explanation
Indices: 63182580--63182755 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
63182570 TGGTTGAGCA
63182580 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63182626 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63182671 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63182719 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63182756 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63182736 original size:93 final size:93
Alignment explanation
Indices: 63182577--63182748 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
63182567 GGATGGTTGA
*
63182577 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
63182642 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63182670 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
63182734 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
63182749 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63184212 original size:27 final size:27
Alignment explanation
Indices: 63184172--63184236 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
63184162 TTGTTACAGG
63184172 ACTAAGT-TGCGAGTTGATTCATAGA-C
1 ACTAAGTGTGCGAGTTGATT-ATAGAGC
*
63184198 ACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAGTTGATTATAGAGC
*
63184225 ACTGAGTGTGCG
1 ACTAAGTGTGCG
63184237 GACTTATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
26 11 0.31
27 24 0.69
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
ACTAAGTGTGCGAGTTGATTATAGAGC
Found at i:63184249 original size:28 final size:28
Alignment explanation
Indices: 63184172--63184249 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 28
63184162 TTGTTACAGG
* *
63184172 ACTAAGT-TGCGAGTTGATT-CATAGAC
1 ACTAAGTGTGCGACTTGATTATATAGAC
*
63184198 ACTAAGTGTGCGAGTTGATTATATAG-C
1 ACTAAGTGTGCGACTTGATTATATAGAC
*
63184225 ACTGAGTGTGCGGACTT-ATATATAT
1 ACTAAGTGTGC-GACTTGAT-TATAT
63184250 TTTTGATCAC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
26 7 0.16
27 25 0.56
28 13 0.29
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (28 bp):
ACTAAGTGTGCGACTTGATTATATAGAC
Found at i:63191917 original size:28 final size:28
Alignment explanation
Indices: 63191846--63191942 Score: 115
Period size: 28 Copynumber: 3.5 Consensus size: 28
63191836 ATCATGAGAT
* * *
63191846 TAGCACTAAGTGTGCGGGTTTAAATTGTA
1 TAGCACTAAGTGTGCGAGTTT-GATTATA
*
63191875 CAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
*
63191903 TAGCACTAAGCGTGCGAG-TTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
* *
63191930 TAACACTGAGTGT
1 TAGCACTAAGTGT
63191943 TCGGACTTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 19 0.32
28 21 0.36
29 19 0.32
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
TAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:63191936 original size:27 final size:28
Alignment explanation
Indices: 63191878--63191936 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
63191868 AATTGTACAG
* *
63191878 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGCGTGCGAGTTTGATTATATAA
63191906 CACTAAGCGTGCGAG-TTGATTATATAA
1 CACTAAGCGTGCGAGTTTGATTATATAA
63191933 CACT
1 CACT
63191937 GAGTGTTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (28 bp):
CACTAAGCGTGCGAGTTTGATTATATAA
Found at i:63194613 original size:40 final size:40
Alignment explanation
Indices: 63194558--63194732 Score: 305
Period size: 40 Copynumber: 4.4 Consensus size: 40
63194548 TATGTGCATA
*
63194558 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAC
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
63194598 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTTCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
63194638 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
63194678 GCATTCGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
63194718 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
63194733 GTTACATCCG
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:63194756 original size:80 final size:80
Alignment explanation
Indices: 63194558--63194756 Score: 240
Period size: 80 Copynumber: 2.5 Consensus size: 80
63194548 TATGTGCATA
* * *
63194558 GCATTCGTGCGGGTTATTATAA-CCGGGTTAAGTCCCGAACGCATTCGTGCGGGTTATTATAACC
1 GCATTCGTGCGGGTTATTATAATCC-GATCAAATCCCGAACGCATTCGTGCGGGTTATTATAACC
*
63194622 GGGTTAAGTTCCGAAG
65 GGGTTAAGTCCCGAAG
* * * * * *
63194638 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAATCCGATCAAATCCCGAACGCATTCGTGCGGGTTATTATAACCG
63194703 GGTTAAGTCCCGAAG
66 GGTTAAGTCCCGAAG
* * * *
63194718 GCATTCGTGCTGGTTGTTA-CATCCGATCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTATAATCCGAT-CAAATCCCGAA
63194757 AGTATTTATG
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 5 0.05
80 99 0.94
81 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAATCCGATCAAATCCCGAACGCATTCGTGCGGGTTATTATAACCG
GGTTAAGTCCCGAAG
Found at i:63198684 original size:85 final size:85
Alignment explanation
Indices: 63198541--63198719 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63198531 GGCCGGCCAT
63198541 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63198606 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63198626 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63198691 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
63198711 GGGCATGGG
1 GAGCATGGG
63198720 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:63200956 original size:47 final size:47
Alignment explanation
Indices: 63200905--63201339 Score: 618
Period size: 47 Copynumber: 9.1 Consensus size: 47
63200895 TTAGGATTTT
* *
63200905 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
63200952 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* **
63201003 ATGTGATGAATGTGAACCGTATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CATGCATATGTGTGATAAGGCCGAATGGCCA
*
63201051 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
63201098 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCA
*
63201149 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
63201196 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
63201243 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
63201290 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
63201337 ATG
1 ATG
63201340 CGAAACGTGT
Statistics
Matches: 356, Mismatches: 24, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 221 0.62
48 46 0.13
49 1 0.00
50 3 0.01
51 85 0.24
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:63201054 original size:24 final size:24
Alignment explanation
Indices: 63201027--63201102 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
63201017 AACCGTATAT
63201027 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
63201051 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
63201074 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
63201098 ATGTG
1 ATGTG
63201103 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:63201176 original size:23 final size:23
Alignment explanation
Indices: 63201149--63201223 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
63201139 CGAATGGCCA
63201149 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
63201172 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
63201196 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
63201219 ATGTG
1 ATGTG
63201224 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:63201402 original size:46 final size:46
Alignment explanation
Indices: 63201313--63201403 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
63201303 GAACATGAAT
* * * *
63201313 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
63201359 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
63201404 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:63201693 original size:37 final size:37
Alignment explanation
Indices: 63201548--63201692 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
63201538 GGAAATATAT
63201548 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
63201585 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
63201622 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
63201659 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
63201693 TCGTCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:63203092 original size:79 final size:79
Alignment explanation
Indices: 63202961--63203190 Score: 372
Period size: 79 Copynumber: 2.9 Consensus size: 79
63202951 GAGAATTGAG
63202961 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
63203026 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* *
63203040 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
63203105 AGGAGCATTCGTGCT
66 A-GAGCATTCGTGCT
* * * * *
63203120 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
63203184 AAGAGCA
66 -AGAGCA
63203191 ATCATGCTGG
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
79 108 0.77
80 32 0.23
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AGAGCATTCGTGCT
Found at i:63203172 original size:119 final size:119
Alignment explanation
Indices: 63202961--63203190 Score: 372
Period size: 119 Copynumber: 1.9 Consensus size: 119
63202951 GAGAATTGAG
*
63202961 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGACCCG
*
63203026 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
66 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
63203080 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGACCCG
* * *
63203144 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
66 -AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCA
63203191 ATCATGCTGG
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
118 4 0.04
119 98 0.96
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (119 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGACCCG
AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:63203202 original size:40 final size:40
Alignment explanation
Indices: 63202961--63203190 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
63202951 GAGAATTGAG
63202961 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
63203001 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
63203040 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63203080 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
63203120 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
63203159 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
63203191 ATCATGCTGG
Statistics
Matches: 177, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 72 0.41
40 105 0.59
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:63203469 original size:57 final size:56
Alignment explanation
Indices: 63203401--63203508 Score: 162
Period size: 56 Copynumber: 1.9 Consensus size: 56
63203391 CGAATGATTA
* *
63203401 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGTGTGCGAAATCGTAATT
* * *
63203458 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCG
63203509 ATCAGTGGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
56 26 0.57
57 20 0.43
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (56 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCGTAATT
Found at i:63203520 original size:56 final size:56
Alignment explanation
Indices: 63203383--63203534 Score: 152
Period size: 56 Copynumber: 2.7 Consensus size: 56
63203373 ATATGGGCAT
* * * *
63203383 TATGTGTGCGAAT-GATTAG-AGGCACTGTGTGTGCAAATTCTTTTAACCGAGCAC
1 TATGTGTGCGAATCGATAAGTGGGCACTGTGTGTGCAAATTCTTTCAACCAAGCAC
* * *
63203437 TATGTGTGCGAAATCG-TAATTGAGGCACTGTGTGTGCGAGTTC-TTCAACCAAGCAC
1 TATGTGTGCG-AATCGATAAGTG-GGCACTGTGTGTGCAAATTCTTTCAACCAAGCAC
*
63203493 TATGTGTGCGAGATCGATCAGTGGGCACTAAGTGTGTG-AAAT
1 TATGTGTGCGA-ATCGATAAGTGGGCACT--GTGTGTGCAAAT
63203535 GAGATTCATG
Statistics
Matches: 79, Mismatches: 11, Indels: 13
0.77 0.11 0.13
Matches are distributed among these distances:
54 10 0.13
55 6 0.08
56 32 0.41
57 24 0.30
58 7 0.09
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (56 bp):
TATGTGTGCGAATCGATAAGTGGGCACTGTGTGTGCAAATTCTTTCAACCAAGCAC
Found at i:63205098 original size:85 final size:85
Alignment explanation
Indices: 63204955--63205133 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63204945 GGCCGGCCAT
63204955 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63205020 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63205040 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63205105 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
63205125 GGGCATGGG
1 GAGCATGGG
63205134 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:63207368 original size:47 final size:47
Alignment explanation
Indices: 63207317--63207796 Score: 681
Period size: 47 Copynumber: 9.9 Consensus size: 47
63207307 TTAGGATTTT
* *
63207317 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
63207364 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
63207415 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
63207462 ATGTGATGAATGTGAACCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
63207512 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
63207559 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCCAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
63207612 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
63207659 ATGTGATGAATGTGAACATGCATAAGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
63207706 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
63207753 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
63207797 TTAATGCGAA
Statistics
Matches: 391, Mismatches: 29, Indels: 26
0.88 0.07 0.06
Matches are distributed among these distances:
47 258 0.66
48 2 0.01
49 3 0.01
50 43 0.11
51 43 0.11
52 1 0.00
53 41 0.10
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:63207654 original size:100 final size:98
Alignment explanation
Indices: 63207317--63207796 Score: 766
Period size: 94 Copynumber: 5.0 Consensus size: 98
63207307 TTAGGATTTT
*
63207317 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
63207382 CG-TATATATATGTGTGATAAGGCCGAATGGCCA
65 CGATATATATATGTGTGATAAGGCCGAATGGCCA
63207415 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
63207480 G-TATATATATGTGTGATAAGGCCGAATGGCCA
66 GATATATATATGTGTGATAAGGCCGAATGGCCA
63207512 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
63207577 TGTATATATATATGCGTGATAAGGCCCAATGGCCA
66 -G-ATATATATATGTGTGATAAGGCCGAATGGCCA
*
63207612 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
**
63207676 -ATGCATA-A-GTGTGATAAGGCCGAATGGCCA
66 GATATATATATGTGTGATAAGGCCGAATGGCCA
* * *
63207706 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
63207770 -ATGA-ATATATGTG-G-TAAGGCCGAATGG
66 GAT-ATATATATGTGTGATAAGGCCGAATGG
63207797 TTAATGCGAA
Statistics
Matches: 365, Mismatches: 11, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
94 100 0.27
95 3 0.01
96 8 0.02
97 99 0.27
98 63 0.17
99 1 0.00
100 91 0.25
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
GATATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:63207665 original size:22 final size:22
Alignment explanation
Indices: 63207638--63207712 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
63207628 CATGCATATG
63207638 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
63207660 TGTGATGAATG-TGAACAT-GCATAA
1 TGTGAT-AAGGCCG-A-ATGGC-CAA
63207684 GTGTGATAAGGCCGAATGGCCAA
1 -TGTGATAAGGCCGAATGGCCAA
63207707 TGTGAT
1 TGTGAT
63207713 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 13 0.32
23 10 0.25
24 10 0.25
25 7 0.17
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:63207739 original size:94 final size:96
Alignment explanation
Indices: 63207317--63207796 Score: 736
Period size: 97 Copynumber: 5.0 Consensus size: 96
63207307 TTAGGATTTT
*
63207317 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
*
63207382 CGTATATATATGTGTGATAAGGCCGAATGGCCA
65 C-TATATATAAGTGTGATAAGGCCGAATGGCCA
63207415 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
63207480 GTATATATATGTGTGATAAGGCCGAATGGCCA
66 -TATATATAAGTGTGATAAGGCCGAATGGCCA
63207512 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
63207577 TGTATATATATATGCGTGATAAGGCCCAATGGCCA
66 --TATATATA-A-GTGTGATAAGGCCGAATGGCCA
*
63207612 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
**
63207676 -ATGCATAAGTGTGATAAGGCCGAATGGCCA
66 TATATATAAGTGTGATAAGGCCGAATGGCCA
* * * *
63207706 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
63207771 TGA-ATAT-A-TGTGGTAAGGCCGAATGG
66 T-ATATATAAGTGTGATAAGGCCGAATGG
63207797 TTAATGCGAA
Statistics
Matches: 361, Mismatches: 15, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
94 98 0.27
95 2 0.01
96 7 0.02
97 100 0.28
98 71 0.20
99 1 0.00
100 82 0.23
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (96 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TATATATAAGTGTGATAAGGCCGAATGGCCA
Found at i:63207873 original size:141 final size:140
Alignment explanation
Indices: 63207317--63207851 Score: 484
Period size: 147 Copynumber: 3.7 Consensus size: 140
63207307 TTAGGATTTT
* ** * * *
63207317 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAA--
** * * * * * * *
63207382 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
63 C--ATGCATAAGTGTGATAAAGCCAAATAGCCAATGTGATGAATGTGAACATGCATATATGAGAT
*
63207447 AAGGCCGAATGGCCA
126 AAGGCCCAATGGCCA
* * *
63207462 ATGTGATGAATGTGAACCGTAT-ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA-C--ATGA-ATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTG
* * * * * **
63207526 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
61 AACATGCATAAGTGTGATAAAGCCAAATAGCCAATGTGATGAATGTGAA-C---ATGCATATAT-
*
63207591 CGTGATAAGGCCCAATGGCCA
121 -GAGATAAGGCCCAATGGCCA
* * * *
63207612 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* * *
63207677 TGCATAAGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
65 TGCATAAGTGTGATAAAGCCAAATAGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
*
63207742 CCGAATGGCCA
130 CCCAATGGCCA
* **
63207753 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGTTAATGCGA-AACGTGTATGA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--A
* * * *
63207817 GATGGAT-A-TGTGGTAAAGCCAAATAGCTAATGTGA
63 CATGCATAAGTGTGATAAAGCCAAATAGCCAATGTGA
63207852 GATATGTACG
Statistics
Matches: 344, Mismatches: 32, Indels: 33
0.84 0.08 0.08
Matches are distributed among these distances:
139 5 0.01
140 23 0.07
141 66 0.19
142 6 0.02
143 8 0.02
144 43 0.12
145 16 0.05
146 3 0.01
147 89 0.26
148 49 0.14
149 1 0.00
150 35 0.10
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
GCATAAGTGTGATAAAGCCAAATAGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
CCAATGGCCA
Found at i:63208119 original size:37 final size:37
Alignment explanation
Indices: 63208011--63208119 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
63208001 GGAAATATAT
*
63208011 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
63208048 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
63208085 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
63208120 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:63219771 original size:40 final size:40
Alignment explanation
Indices: 63219716--63219795 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
63219706 AGAATAACTT
63219716 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
1 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
63219756 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
1 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
63219796 TAATAACACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (40 bp):
AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
Found at i:63226014 original size:40 final size:41
Alignment explanation
Indices: 63225949--63226045 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
63225939 TAAGTTGGTA
*
63225949 TCGCACACTTAGTGCC-TCATATAGCCAAAGC-TATGCCAAC
1 TCGCACACTTAGTGCCATCATATAGCCAAAGCTTAT-CAAAC
* * * *
63225989 TCGCACACTTAGTGCCAT-TTGTAGCCGAAGCTTTATTAAAC
1 TCGCACACTTAGTGCCATCATATAGCCAAAGC-TTATCAAAC
63226030 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
63226046 AACACTTTCG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 42 0.86
41 4 0.08
42 3 0.06
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATCATATAGCCAAAGCTTATCAAAC
Found at i:63226379 original size:8 final size:8
Alignment explanation
Indices: 63226366--63226395 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
63226356 AGTCCCTATT
63226366 TCACAAAA
1 TCACAAAA
63226374 TCACAAAA
1 TCACAAAA
63226382 TCACAAAA
1 TCACAAAA
63226390 TACACA
1 T-CACA
63226396 TAATTTGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:63245780 original size:28 final size:28
Alignment explanation
Indices: 63245717--63245814 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
63245707 ATATTAAGTC
*
63245717 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
63245744 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
63245772 CGCACACTTAGTACTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
63245801 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63245815 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63254728 original size:40 final size:40
Alignment explanation
Indices: 63254668--63254842 Score: 314
Period size: 40 Copynumber: 4.4 Consensus size: 40
63254658 CGGATGTAAC
*
63254668 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
63254708 AACCCGCACGAATGCCTTCGGGACTTAACTCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
63254748 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
63254788 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
63254828 AACCCGCATGAATGC
1 AACCCGCACGAATGC
63254843 TATGCACATA
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:63258874 original size:27 final size:26
Alignment explanation
Indices: 63258836--63258947 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
63258826 TGGCACAGTC
*
63258836 ATTTTACCCTACAGTGGTATTTCGGTA
1 ATTTTACACTACAG-GGTATTTCGGTA
*
63258863 ATTTTACACTACAAGGTCATTTCGGTA
1 ATTTTACACTACAGGGT-ATTTCGGTA
*
63258890 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTAC-AGGGTATTTCGGTA
*
63258917 ATTTTACACCATA-AGGGTATTTCGATA
1 ATTTTACA-C-TACAGGGTATTTCGGTA
63258944 ATTT
1 ATTT
63258948 ACAAACCAGG
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.04
27 65 0.87
28 5 0.07
29 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (26 bp):
ATTTTACACTACAGGGTATTTCGGTA
Found at i:63273606 original size:50 final size:50
Alignment explanation
Indices: 63273503--63273908 Score: 204
Period size: 46 Copynumber: 8.6 Consensus size: 50
63273493 TGCAGGTGCT
* * * * *
63273503 GATGCCATGTCCCAGAAAT-GTCTTACAC-TG-TC-ACTCATCTCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTA-GCATATCTATGTC
* *
63273550 GACGCCATGTTCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
* * * * * * *
63273600 GACGCCATGTCCCAGACATAGTCTTACAC-TG-AC-A-CCTCTCGTA-GTT
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATC-TATGTC
*** * * *
63273646 GATG-CATGTCCCAGACAT-GTCTTACATTGGCT-TATGTC-T-T-GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTA-G-CATATCTATGTC
* *
63273692 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
* * *
63273742 GATGCCATGTCCCAGACATGGTTTTACACTAA---C-A-CCTCTC-ATAGTC
1 GATGCCATGTCCCAGACATGGTCTTACAC-AAGCTCTAGCATATCTAT-GTC
** * * * * *
63273788 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TA-CGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
* * * * * * *
63273834 AATG-CATGTCCCGGACAT-GTCTTACACTAGCACT--CATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
63273880 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
63273909 TGACACCTCT
Statistics
Matches: 283, Mismatches: 48, Indels: 55
0.73 0.12 0.14
Matches are distributed among these distances:
44 16 0.06
45 31 0.11
46 73 0.26
47 51 0.18
48 34 0.12
49 6 0.02
50 69 0.24
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
Found at i:63273769 original size:142 final size:141
Alignment explanation
Indices: 63273553--63274090 Score: 655
Period size: 138 Copynumber: 3.8 Consensus size: 141
63273543 CAATGTCGAC
* *
63273553 GCCATGTTCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTCGACGCCATGTCCCAGACA
1 GCCATGTCCCAGACAT-GTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACA
* * * *
63273618 TAGTCTTACACTGACACCTCTCGTAGTTGATGCATGTCCCAGACATGTCTTACATTGGCTTATGT
65 TGGTCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGT
*
63273683 CTTGAGGCCGAT
130 CTCGAGGCCGAT
* *
63273695 GCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTGTGTCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACAT-GTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACA
* * *
63273760 TGGTTTTACACTAACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGT
65 TGGTCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGT
*
63273825 CTCGAGGCCAAT
130 CTCGAGGCCGAT
* * * * * *
63273837 G-CATGTCCCGGACATGTCTTACACTAGCACT--CATCTCAATGCCGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACAT
* *
63273899 GGTCTTACACTGACACCTCTCATAGCCGATGCATGTCCCAGATATGTCTTACATTGGCTTACGTC
66 GGTCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTC
63273964 TCGAGGCCGAT
131 TCGAGGCCGAT
* * * * * * * * *
63273975 -ACATGTCCCAGACATGTCTTACACTAGCACT--CGTCTCAATGCCGACGCCATATCCCA-ACAT
1 GCCATGTCCCAGACATGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACAT
* *
63274036 GGTCTTACACTG---GCTCTCATAATGTGGCCGATGGATGTCCCAGACATGTCTTACA
66 GGTCTTACACTGACACCTCTCAT-A-GT---CGATGCATGTCCCAGACATGTCTTACA
63274091 ATAGCTCACA
Statistics
Matches: 355, Mismatches: 35, Indels: 15
0.88 0.09 0.04
Matches are distributed among these distances:
134 7 0.02
135 1 0.00
136 1 0.00
137 16 0.05
138 148 0.42
139 25 0.07
140 14 0.04
141 13 0.04
142 130 0.37
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCATGTCCCAGACATGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACAT
GGTCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTC
TCGAGGCCGAT
Found at i:63273851 original size:46 final size:46
Alignment explanation
Indices: 63273605--63274090 Score: 309
Period size: 46 Copynumber: 10.5 Consensus size: 46
63273595 ATGTCGACGC
* * **
63273605 CATGTCCCAGACATAGTCTTACACTGAC--ACCTCTCGTA-GTTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCG-AGGCCGATG
* * *
63273650 CATGTCCCAGACATGTCTTACATTGGCTTATGTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
** * * * * *
63273696 CCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTG-TGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TA-CGT-CTCGAGGCCGATG
* ** * * *
63273746 CCATGTCCCAGACATGGTTTTACACTAAC--ACCTCTC-ATAGTCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGA-GGCCGATG
*
63273792 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
* * * * * *
63273838 CATGTCCCGGACATGTCTTACACTAGCACT-CATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAGGCCGATG
* * *
63273884 CCATGTCCCAGACATGGTCTTACACTGAC--ACCTCTC-ATAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGA-GGCCGATG
* * *
63273930 CATGTCCCAGATATGTCTTACATTGGCTTACGTCTCGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
* * * * *
63273976 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGCCGACG
1 CATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAGGCCGATG
* * * *
63274022 CCATATCCCA-ACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCT-TACGT-CTCGAGGCCGATG
*
63274069 GATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
63274091 ATAGCTCACA
Statistics
Matches: 348, Mismatches: 66, Indels: 53
0.75 0.14 0.11
Matches are distributed among these distances:
44 32 0.09
45 44 0.13
46 146 0.42
47 65 0.19
48 23 0.07
49 2 0.01
50 33 0.09
51 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG
Found at i:63274012 original size:92 final size:93
Alignment explanation
Indices: 63273507--63274095 Score: 308
Period size: 92 Copynumber: 6.3 Consensus size: 93
63273497 GGTGCTGATG
* * * * *
63273507 CCATGTCCCAGAAAT-GTCTTACACT-GTCACTCATCTCA-ATGTCGACGCCATGTTCCAGACAT
1 CCATGTCCCAGACATGGTCTTACACTAG-CACTCGTCTCATA-GCCGATG-CATGTCCCAGACAT
** * * * * *
63273569 GGTCTTACACAAGCTCTAGCATATCTATGTCGACG
63 -GTCTTACACTGGCT-TA-CATCTCGAGGCCGA-T
* * **
63273604 CCATGTCCCAGACATAGTCTTACACT-GACAC-C-TCTCGTAGTTGATGCATGTCCCAGACATGT
1 CCATGTCCCAGACATGGTCTTACACTAG-CACTCGTCTCATAGCCGATGCATGTCCCAGACATGT
* ** *
63273666 CTTACATTGGCTTATGTCTTGAGGCCGAT
65 CTTACACTGGCTTACATCTCGAGGCCGAT
* * * * *
63273695 GCCATGTCCCAGACATGGTCTTACACAAGCTCTAG-CAT-ATTTGTGTCGATGCCATGTCCCAGA
1 -CCATGTCCCAGACATGGTCTTACACTAGCACTCGTC-TCA--T-AGCCGATG-CATGTCCCAGA
* ** * * *
63273758 CATGGTTTTACACTAAC--ACCTCTC-ATAGTCGAT
60 CAT-GTCTTACACTGGCTTACATCTCGA-GGCCGAT
* * * * * *
63273791 GCATGTCCCAGACAT-GTCTTACACTGGC-TTACGTCTCGA-GGCCAATGCATGTCCCGGACATG
1 CCATGTCCCAGACATGGTCTTACACTAGCACT-CGTCTC-ATAGCCGATGCATGTCCCAGACATG
* * * *
63273853 TCTTACACTAGCACT-CATCTCAATGCCGAT
64 TCTTACACTGGC-TTACATCTCGAGGCCGAT
*
63273883 GCCATGTCCCAGACATGGTCTTACACT-GACAC-C-TCTCATAGCCGATGCATGTCCCAGATATG
1 -CCATGTCCCAGACATGGTCTTACACTAG-CACTCGTCTCATAGCCGATGCATGTCCCAGACATG
* *
63273945 TCTTACATTGGCTTACGTCTCGAGGCCGAT
64 TCTTACACTGGCTTACATCTCGAGGCCGAT
* * *
63273975 ACATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCA-ATGCCGACGCCATATCCCA-ACATG
1 CCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCATA-GCCGATG-CATGTCCCAGACAT-
* *
63274037 GTCTTACACTGGCTCT-CATAAT-GTGGCCGAT
63 GTCTTACACTGGCT-TACAT-CTCGAGGCCGAT
** *
63274068 GGATGTCCCAGACAT-GTCTTACAATAGC
1 CCATGTCCCAGACATGGTCTTACACTAGC
63274096 TCACAATAAC
Statistics
Matches: 387, Mismatches: 70, Indels: 74
0.73 0.13 0.14
Matches are distributed among these distances:
90 24 0.06
91 32 0.08
92 107 0.28
93 78 0.20
94 38 0.10
95 30 0.08
96 25 0.06
97 30 0.08
98 23 0.06
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCATAGCCGATGCATGTCCCAGACATGTC
TTACACTGGCTTACATCTCGAGGCCGAT
Found at i:63274050 original size:93 final size:90
Alignment explanation
Indices: 63273787--63274095 Score: 227
Period size: 93 Copynumber: 3.4 Consensus size: 90
63273777 CTCTCATAGT
* * * * * * * *
63273787 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGA-GGCCAATGCATGTCCCGGACA
1 CGATACATGTCCCAGACATGTCTTACACTAGC--ACCTCTC-ATAGCCGACGCATATCCCAGACA
* * * * *
63273851 TGTCTTACACTAGCACTCAT-CTCAATGC
63 TGTCTTACACTGGCTCTCATAAT-GAGGC
* * * *
63273879 CGATGCCATGTCCCAGACATGGTCTTACACT-GACACCTCTCATAGCCGATGCATGTCCCAGATA
1 CGAT-ACATGTCCCAGACAT-GTCTTACACTAG-CACCTCTCATAGCCGACGCATATCCCAGACA
* * *
63273943 TGTCTTACATTGGCT-TACGT-CTCGAGGC
63 TGTCTTACACTGGCTCT-CATAAT-GAGGC
63273971 CGATACATGTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGACGCCATATCCCA-AC
1 CGATACATGTCCCAGACATGTCTTACACTAGCAC-C-TCTCATA-GCCGACG-CATATCCCAGAC
*
63274034 ATGGTCTTACACTGGCTCTCATAATGTGGC
62 AT-GTCTTACACTGGCTCTCATAATGAGGC
** *
63274064 CGATGGATGTCCCAGACATGTCTTACAATAGC
1 CGATACATGTCCCAGACATGTCTTACACTAGC
63274096 TCACAATAAC
Statistics
Matches: 181, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
90 13 0.07
91 19 0.10
92 65 0.36
93 71 0.39
94 13 0.07
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (90 bp):
CGATACATGTCCCAGACATGTCTTACACTAGCACCTCTCATAGCCGACGCATATCCCAGACATGT
CTTACACTGGCTCTCATAATGAGGC
Found at i:63275443 original size:13 final size:14
Alignment explanation
Indices: 63275417--63275445 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63275407 ACTAACGACG
63275417 AATTAAACCATTAT
1 AATTAAACCATTAT
63275431 AATTAAA-CATTAT
1 AATTAAACCATTAT
63275444 AA
1 AA
63275446 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:63277236 original size:27 final size:27
Alignment explanation
Indices: 63277148--63277239 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
63277138 TTCCTAAAAG
* *
63277148 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
** *
63277175 TACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
63277202 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
63277229 TACCCTCGATT
1 TACCCTCGATT
63277240 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:63277301 original size:27 final size:27
Alignment explanation
Indices: 63277271--63277394 Score: 128
Period size: 27 Copynumber: 4.6 Consensus size: 27
63277261 TATAGGGTAG
63277271 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * *
63277298 AATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
63277325 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
63277352 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
63277379 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
63277395 TTAACTTTCT
Statistics
Matches: 79, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
26 4 0.05
27 71 0.90
28 4 0.05
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:63277330 original size:54 final size:55
Alignment explanation
Indices: 63277271--63277472 Score: 182
Period size: 54 Copynumber: 3.7 Consensus size: 55
63277261 TATAGGGTAG
***
63277271 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCATTGGTTTGTGA
1 AATTACCAAAATACCCCTAAGTTTGTAAAATTACCAAAATACCATTGGTTTACAA
* ** *
63277325 AATTACCGAAATA-CCCTCAA-TTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-AAGTTTGTAAAATTACCAAAATACCATTGGTTTACAA
* * * *
63277379 AATTA-CAGAAATACCCTTAACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCCTAAGTTTGT-AAAATTACCA-AAATACCATTGGTTTACAA
* ** * *
63277435 AATTACTAAAATA-CCCTTGGTTTGTAGATTTACCAAAA
1 AATTACCAAAATACCCCTAAGTTTGTAAAATTACCAAAA
63277473 CACCCTTGTA
Statistics
Matches: 116, Mismatches: 23, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
53 5 0.04
54 60 0.52
55 17 0.15
56 33 0.28
57 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (55 bp):
AATTACCAAAATACCCCTAAGTTTGTAAAATTACCAAAATACCATTGGTTTACAA
Found at i:63277446 original size:27 final size:27
Alignment explanation
Indices: 63277406--63277457 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
63277396 TAACTTTCTA
63277406 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
63277433 AAAATTACTA-AAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
63277458 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:63277567 original size:27 final size:26
Alignment explanation
Indices: 63277502--63277574 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
63277492 GACTAAAATT
*
63277502 CCCCTA-ATAGGTAAAAAGACCGTAAA
1 CCCCTATAT-GGTAAAATGACCGTAAA
* * * *
63277528 GCCCTTTAGGGTAAAGTGACCGTAATA
1 CCCCTATATGGTAAAATGACCGTAA-A
63277555 CCCCTATATGGTAAAATGAC
1 CCCCTATATGGTAAAATGAC
63277575 GAATATGCCC
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
26 18 0.50
27 18 0.50
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (26 bp):
CCCCTATATGGTAAAATGACCGTAAA
Found at i:63278422 original size:25 final size:25
Alignment explanation
Indices: 63278384--63278453 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
63278374 AGGAAGTGCT
* *
63278384 AAAAGGGCTATGCCCCAGTTTA-CTG
1 AAAAGGGCTTTGCCCCAGTTTATC-A
63278409 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
63278434 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
63278454 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:63278466 original size:24 final size:24
Alignment explanation
Indices: 63278383--63278478 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
63278373 GAGGAAGTGC
63278383 TAAAAGGGCTATGCCCCAGTTTACT
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
63278408 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
63278432 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
63278456 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
63278479 ATATGATAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
23 5 0.08
24 12 0.20
25 43 0.70
26 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:63278477 original size:50 final size:50
Alignment explanation
Indices: 63278384--63278478 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
63278374 AGGAAGTGCT
**
63278384 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
* *
63278434 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACTGAAAAG-GGCTAGGCC-CCAGTT
63278479 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 6 0.15
49 10 0.26
50 23 0.59
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:63278783 original size:33 final size:34
Alignment explanation
Indices: 63278730--63278794 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
63278720 ATATGTCGAG
*
63278730 ACTGAATTAGGGCTTAGGCCCATACTGTACTGTT
1 ACTGAATTAGGGCTTAGGCCCAGACTGTACTGTT
* *
63278764 ACTGAA-TAGGGCTTTGGCCCAGATTGTACTG
1 ACTGAATTAGGGCTTAGGCCCAGACTGTACTG
63278795 ACACTATGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 22 0.79
34 6 0.21
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (34 bp):
ACTGAATTAGGGCTTAGGCCCAGACTGTACTGTT
Found at i:63283920 original size:9 final size:9
Alignment explanation
Indices: 63283906--63283996 Score: 103
Period size: 9 Copynumber: 10.1 Consensus size: 9
63283896 TATGTATTAC
*
63283906 GTAAGTTAA
1 GTAAGTTAT
63283915 GTAAGTTAT
1 GTAAGTTAT
63283924 GTAAGTTAT
1 GTAAGTTAT
63283933 GTAAGTTAT
1 GTAAGTTAT
63283942 GTAAGTTAT
1 GTAAGTTAT
* *
63283951 GATATGATAT
1 G-TAAGTTAT
* *
63283961 -AAATTTAT
1 GTAAGTTAT
*
63283969 GTAAGGTAT
1 GTAAGTTAT
63283978 GTAAGTTAT
1 GTAAGTTAT
*
63283987 GTAAATTAT
1 GTAAGTTAT
63283996 G
1 G
63283997 ATATGAAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
8 4 0.06
9 58 0.85
10 6 0.09
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:63283971 original size:45 final size:45
Alignment explanation
Indices: 63283920--63284016 Score: 158
Period size: 45 Copynumber: 2.2 Consensus size: 45
63283910 GTTAAGTAAG
* * *
63283920 TTATGTAAGTTATGTAAGTTATGTAAGTTATGATATGATATAAAT
1 TTATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATAAAT
*
63283965 TTATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATAT
1 TTATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATAAAT
63284010 TTATGTA
1 TTATGTA
63284017 TTACGTAAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (45 bp):
TTATGTAAGGTATGTAAGTTATGTAAATTATGATATGAAATAAAT
Found at i:63284567 original size:17 final size:17
Alignment explanation
Indices: 63284529--63284567 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
63284519 CAAATTGAGC
* *
63284529 AAAAATGATTTTGTATA
1 AAAAATGATTTTGAAAA
*
63284546 GAAAATGATTTTGAAAA
1 AAAAATGATTTTGAAAA
63284563 AAAAA
1 AAAAA
63284568 ATATGGCAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (17 bp):
AAAAATGATTTTGAAAA
Found at i:63285082 original size:20 final size:20
Alignment explanation
Indices: 63285057--63285097 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
63285047 GATGGTAGAG
63285057 TCGATTCCAACAAATTAAAT
1 TCGATTCCAACAAATTAAAT
* * *
63285077 TCGATTCTAGCAACTTAAAT
1 TCGATTCCAACAAATTAAAT
63285097 T
1 T
63285098 ACACCTGCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (20 bp):
TCGATTCCAACAAATTAAAT
Found at i:63285402 original size:35 final size:35
Alignment explanation
Indices: 63285362--63285467 Score: 120
Period size: 35 Copynumber: 3.3 Consensus size: 35
63285352 AATTTATAGG
*
63285362 CTAAAATGAAAATTCAAAAACCCTTTGAAATTAGA
1 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
* * *
63285397 CTAAAATGGAACTT-GAAAA---TTT---A-TAGG
1 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
63285424 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
1 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
63285459 CTAAAATGG
1 CTAAAATGG
63285468 GTTTACTACA
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
27 16 0.29
28 5 0.09
31 6 0.11
34 5 0.09
35 24 0.43
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.26
Consensus pattern (35 bp):
CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
Found at i:63285412 original size:62 final size:62
Alignment explanation
Indices: 63285344--63285467 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
63285334 TACAGTAATA
63285344 AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
1 AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
*
63285406 AACTTGAAAATTTATAGGCTAAAATGGAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
1 AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
63285468 GTTTACTACA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (62 bp):
AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
Found at i:63290854 original size:21 final size:20
Alignment explanation
Indices: 63290830--63290943 Score: 88
Period size: 21 Copynumber: 5.5 Consensus size: 20
63290820 CCCAATACCC
63290830 TAAACCCTATAGACTAAACCT
1 TAAACCCTATA-ACTAAACCT
* * *
63290851 TAAACCCGATACCGAATACCT
1 TAAACCCTATAACTAA-ACCT
*
63290872 TAAACCCTATAAACTAAACCA
1 TAAACCCTAT-AACTAAACCT
* *
63290893 TAAACCCAAATACCCTAAACCT
1 TAAACCC-TATA-ACTAAACCT
*
63290915 TAAA-CCTA-AATTTTAAACCT
1 TAAACCCTATAA--CTAAACCT
63290935 TAAACCCTA
1 TAAACCCTA
63290944 ATTCCATGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
19 1 0.01
20 15 0.21
21 40 0.55
22 17 0.23
ACGTcount: A:0.45, C:0.30, G:0.03, T:0.23
Consensus pattern (20 bp):
TAAACCCTATAACTAAACCT
Found at i:63290869 original size:42 final size:42
Alignment explanation
Indices: 63290809--63290899 Score: 137
Period size: 42 Copynumber: 2.2 Consensus size: 42
63290799 ATTTAATTTG
* * *
63290809 TAAACTCGATACCCAATACCCTAAACCCTATAGACTAAACCT
1 TAAACCCGATACCCAATACCCTAAACCCTATAAACTAAACCA
* *
63290851 TAAACCCGATACCGAATACCTTAAACCCTATAAACTAAACCA
1 TAAACCCGATACCCAATACCCTAAACCCTATAAACTAAACCA
63290893 TAAACCC
1 TAAACCC
63290900 AAATACCCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.43, C:0.33, G:0.04, T:0.20
Consensus pattern (42 bp):
TAAACCCGATACCCAATACCCTAAACCCTATAAACTAAACCA
Found at i:63295042 original size:39 final size:39
Alignment explanation
Indices: 63294996--63295108 Score: 120
Period size: 39 Copynumber: 2.9 Consensus size: 39
63294986 GTTTGTTAAA
* *
63294996 AAAATGCCACTATTGCTTAGTTTTTAGCGGTGTTTAGAC
1 AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTTTAGAC
* * *
63295035 AAAATGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGAC
1 AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTTTAGAC
* * * *
63295074 AAAAAATGCCGCTA-TGCTCAATTTTTTGCAGCGTT
1 --AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTT
63295109 GTATAGAAGA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 34 0.54
40 17 0.27
41 12 0.19
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (39 bp):
AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTTTAGAC
Found at i:63295100 original size:41 final size:42
Alignment explanation
Indices: 63294927--63295108 Score: 132
Period size: 41 Copynumber: 4.5 Consensus size: 42
63294917 TGAAAATGGC
* * *
63294927 TGCTCAACTTTTTA-TGGCGTTTGGATAAAAAATGGCGCTAT
1 TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
* * * * *
63294968 AGAT-AAGCTTTTT-GCGGAGTTTGTTA-AAAAAATGCCACTAT
1 TGCTCAA-CTTTTTAGCGGCGTTTG-GACAAAAAATGCCGCTAT
* * * *
63295009 TGCT-TAGTTTTTAGCGGTGTTTAGAC--AAAATGCCGCTAT
1 TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
* *
63295048 TTCTC-AGTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTA-
1 TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
* *
63295088 TGCTCAA-TTTTTTGCAGCGTT
1 TGCTCAACTTTTTAGCGGCGTT
63295109 GTATAGAAGA
Statistics
Matches: 111, Mismatches: 21, Indels: 19
0.74 0.14 0.13
Matches are distributed among these distances:
39 34 0.31
40 24 0.22
41 52 0.47
42 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (42 bp):
TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
Found at i:63308730 original size:30 final size:30
Alignment explanation
Indices: 63308696--63308756 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63308686 TCCTTAACTC
63308696 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
63308726 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
63308756 A
1 A
63308757 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:63316077 original size:27 final size:27
Alignment explanation
Indices: 63316039--63316201 Score: 161
Period size: 27 Copynumber: 6.0 Consensus size: 27
63316029 GTCGTTAAGA
*
63316039 CCTCGGTTTGTAAAATTACTGAAATAC
1 CCTCAGTTTGTAAAATTACTGAAATAC
63316066 CCTCAGTTTGTAAAATTA-TCGAAATAC
1 CCTCAGTTTGTAAAATTACT-GAAATAC
* * **
63316093 CCTCAATTTATAAAATTACCAAAATAC
1 CCTCAGTTTGTAAAATTACTGAAATAC
* *
63316120 CC-CTGGTTTGTAAAGTTACTGAAATAC
1 CCTC-AGTTTGTAAAATTACTGAAATAC
* * * *
63316147 CCCCGGGTTGTAAAATTACTAAAATAC
1 CCTCAGTTTGTAAAATTACTGAAATAC
* *
63316174 CCCCAATTTGTAAAATTA-TCGAAATAC
1 CCTCAGTTTGTAAAATTACT-GAAATAC
63316201 C
1 C
63316202 TCTGTAGGGT
Statistics
Matches: 113, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.03
27 109 0.96
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
CCTCAGTTTGTAAAATTACTGAAATAC
Found at i:63316181 original size:81 final size:81
Alignment explanation
Indices: 63316043--63316201 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 81
63316033 TTAAGACCTC
* * * *
63316043 GGTTTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCTCAATTTATAAAA
1 GGTTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTATCAAAATACCCCCAATTTATAAAA
63316108 TTACCAAAATACCCCT
66 TTACCAAAATACCCCT
* * *
63316124 GGTTTGTAAAGTTACTGAAATACCCCCGGGTTGTAAAATTA-CTAAAATACCCCCAATTTGTAAA
1 GGTTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTATC-AAAATACCCCCAATTTATAAA
* *
63316188 ATTATCGAAATACC
65 ATTACCAAAATACC
63316202 TCTGTAGGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 67 0.99
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.31
Consensus pattern (81 bp):
GGTTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTATCAAAATACCCCCAATTTATAAAA
TTACCAAAATACCCCT
Found at i:63316214 original size:54 final size:54
Alignment explanation
Indices: 63316048--63316221 Score: 153
Period size: 54 Copynumber: 3.2 Consensus size: 54
63316038 ACCTCGGTTT
* * *
63316048 GTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCTCAATTTA--
1 GTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATCGAAATA-CCTC--TGTAGG
* ** * * *
63316103 -TAAAATTACCAAAATACCCCTGGTTTGTAAAGTTA-CTGAAATACCCCCG--GG
1 GTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATC-GAAATACCTCTGTAGG
*
63316154 TTGTAAAATTACTAAAATACCCCCAATTTGTAAAATTATCGAAATACCTCTGTAGG
1 --GTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATCGAAATACCTCTGTAGG
*
63316210 GTAAAATAACTA
1 GTAAAATTACTA
63316222 TTTTGCCCTT
Statistics
Matches: 93, Mismatches: 17, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
53 4 0.04
54 86 0.92
55 1 0.01
56 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (54 bp):
GTAAAATTACTAAAATACCCCCAGTTTGTAAAATTATCGAAATACCTCTGTAGG
Found at i:63317649 original size:17 final size:18
Alignment explanation
Indices: 63317619--63317659 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
63317609 TTTTACTCAA
63317619 GTTTTCAAATAAAA-AGG
1 GTTTTCAAATAAAACAGG
*
63317636 GTTTTC-AATGAAAACATG
1 GTTTTCAAAT-AAAACAGG
63317654 GTTTTC
1 GTTTTC
63317660 GAAAAACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (18 bp):
GTTTTCAAATAAAACAGG
Found at i:63330295 original size:17 final size:17
Alignment explanation
Indices: 63330273--63330313 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
63330263 TGGATCTCTT
63330273 AAAAGGAATTGACGGTA
1 AAAAGGAATTGACGGTA
63330290 AAAAGGAATTGACGGTA
1 AAAAGGAATTGACGGTA
63330307 AAAAGGA
1 AAAAGGA
63330314 TCTAGCCCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.51, C:0.05, G:0.29, T:0.15
Consensus pattern (17 bp):
AAAAGGAATTGACGGTA
Found at i:63341137 original size:27 final size:26
Alignment explanation
Indices: 63341093--63341143 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63341083 CTCGCTACAA
*
63341093 TCTGGTGGCCTCGCCACATATATCTTT
1 TCTGGTGACCTCGCCACA-ATATCTTT
* *
63341120 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
63341144 GGCTGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTTT
Found at i:63341681 original size:21 final size:21
Alignment explanation
Indices: 63341656--63341697 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
63341646 TTGTAATAAG
63341656 GCCGCTATTTAAATTTCTTTT
1 GCCGCTATTTAAATTTCTTTT
63341677 GCCGCTATTTAAATTTCTTTT
1 GCCGCTATTTAAATTTCTTTT
63341698 TCAAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (21 bp):
GCCGCTATTTAAATTTCTTTT
Found at i:63342854 original size:27 final size:27
Alignment explanation
Indices: 63342816--63342952 Score: 152
Period size: 27 Copynumber: 5.1 Consensus size: 27
63342806 GTCGTTAAGA
* *
63342816 CCTCGGTTTGTAAAATTACTGAGATAC
1 CCTCGATTTGTAAAATTACTGAAATAC
63342843 CCTCGATTTGTAAAATTACTGAAATAC
1 CCTCGATTTGTAAAATTACTGAAATAC
** **
63342870 CCTTAATTTGTAAAATTACCAAAATAC
1 CCTCGATTTGTAAAATTACTGAAATAC
* *
63342897 CC-CTGGTTTGTAAAATTACTAAAATAC
1 CCTC-GATTTGTAAAATTACTGAAATAC
* *
63342924 CC-CTGAATTGTAAAATTACCGAAATAC
1 CCTC-GATTTGTAAAATTACTGAAATAC
63342951 CC
1 CC
63342953 CCAGTTTATA
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
CCTCGATTTGTAAAATTACTGAAATAC
Found at i:63342907 original size:54 final size:55
Alignment explanation
Indices: 63342822--63342978 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 55
63342812 AAGACCTCGG
* * * * *
63342822 TTTGTAAAATTACTGAGATA-CCCTCGATTTGTAAAATTACTGAAATA-CCCTTAA
1 TTTGTAAAATTACCGAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCCTGAA
*
63342876 TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGAA
1 TTTGTAAAATTACCGAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGAA
** *
63342931 -TTGTAAAATTACCGAAATACCCCCAGTTTATAAAATTA-TCAAAATACC
1 TTTGTAAAATTACCGAAATACCCCTGGTTTGTAAAATTACT-AAAATACC
63342979 TCTGTAGGGT
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 1 0.01
54 79 0.88
55 10 0.11
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (55 bp):
TTTGTAAAATTACCGAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGAA
Found at i:63342964 original size:27 final size:27
Alignment explanation
Indices: 63342821--63342978 Score: 131
Period size: 27 Copynumber: 5.9 Consensus size: 27
63342811 TAAGACCTCG
** * *
63342821 GTTTGTAAAATTACTGAGATACCCTC-
1 GTTTGTAAAATTACCAAAATACCCCCA
** **
63342847 GATTTGTAAAATTACTGAAATACCCTTA
1 G-TTTGTAAAATTACCAAAATACCCCCA
* **
63342875 ATTTGTAAAATTACCAAAATACCCCTG
1 GTTTGTAAAATTACCAAAATACCCCCA
* *
63342902 GTTTGTAAAATTACTAAAATA-CCCCT
1 GTTTGTAAAATTACCAAAATACCCCCA
* *
63342928 GAATTGTAAAATTACCGAAATACCCCCA
1 G-TTTGTAAAATTACCAAAATACCCCCA
* *
63342956 GTTTATAAAATTATCAAAATACC
1 GTTTGTAAAATTACCAAAATACC
63342979 TCTGTAGGGT
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.05
27 99 0.91
28 5 0.05
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCCA
Found at i:63342965 original size:81 final size:81
Alignment explanation
Indices: 63342820--63342978 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 81
63342810 TTAAGACCTC
* * * * ** *
63342820 GGTTTGTAAAATTACTGAGATACCCTCGATTTGTAAAATTACTGAAATACCCTTAATTTGTAAAA
1 GGTTTGTAAAATTACTAAAATACCCTCGAATTGTAAAATTACCGAAATACCCCCAATTTATAAAA
63342885 TTACCAAAATACCCCT
66 TTACCAAAATACCCCT
*
63342901 GGTTTGTAAAATTACTAAAATACCC-CTGAATTGTAAAATTACCGAAATACCCCCAGTTTATAAA
1 GGTTTGTAAAATTACTAAAATACCCTC-GAATTGTAAAATTACCGAAATACCCCCAATTTATAAA
*
63342965 ATTATCAAAATACC
65 ATTACCAAAATACC
63342979 TCTGTAGGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 67 0.99
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (81 bp):
GGTTTGTAAAATTACTAAAATACCCTCGAATTGTAAAATTACCGAAATACCCCCAATTTATAAAA
TTACCAAAATACCCCT
Found at i:63343573 original size:27 final size:27
Alignment explanation
Indices: 63343542--63343746 Score: 144
Period size: 27 Copynumber: 7.9 Consensus size: 27
63343532 TAGACCCTAG
*
63343542 TTTGTAAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACTAAAATACCCTCGA
* *
63343569 TTTGTAAAATTA-TCGAAATACCCTCAA
1 TTTGTAAAATTACT-AAAATACCCTCGA
*
63343596 TTTGTAAAATTACCAAAATACCCTC-A
1 TTTGTAAAATTACTAAAATACCCTCGA
* ** *
63343622 GTTTATAAAATTAC--CGA-A--C-GGA
1 -TTTGTAAAATTACTAAAATACCCTCGA
63343644 -TTGTAAAATTA-TCAAAATACCCTCGA
1 TTTGTAAAATTACT-AAAATACCCTCGA
* * * * *
63343670 ATTATAAAATTTCTAAAATACCCCCAA
1 TTTGTAAAATTACTAAAATACCCTCGA
* * *
63343697 TTTGTAAAATTATTGAAATACCC-CCA
1 TTTGTAAAATTACTAAAATACCCTCGA
*
63343723 GTTTGTAAATTTACTAAAATACCC
1 -TTTGTAAAATTACTAAAATACCC
63343747 CTGTAGGGTA
Statistics
Matches: 140, Mismatches: 24, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
20 10 0.07
22 3 0.02
23 1 0.01
24 1 0.01
25 2 0.01
26 6 0.04
27 116 0.83
28 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACTAAAATACCCTCGA
Found at i:63343654 original size:74 final size:74
Alignment explanation
Indices: 63343570--63343708 Score: 199
Period size: 74 Copynumber: 1.9 Consensus size: 74
63343560 TACCCTCGAT
* * * *
63343570 TTGTAAAATTATCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCTCAGTTTATAAAATT
1 TTGTAAAATTATCAAAATACCCTCGAA-TTATAAAATTACCAAAATACCCCCAATTTATAAAATT
63343634 ACCGAACGGA
65 ACCGAACGGA
* * *
63343644 TTGTAAAATTATCAAAATACCCTCGAATTATAAAATTTCTAAAATACCCCCAATTTGTAAAATTA
1 TTGTAAAATTATCAAAATACCCTCGAATTATAAAATTACCAAAATACCCCCAATTTATAAAATTA
63343709 TTGAAATACC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 55 0.96
75 2 0.04
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (74 bp):
TTGTAAAATTATCAAAATACCCTCGAATTATAAAATTACCAAAATACCCCCAATTTATAAAATTA
CCGAACGGA
Found at i:63343704 original size:101 final size:101
Alignment explanation
Indices: 63343543--63343736 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 101
63343533 AGACCCTAGT
* * * * *
63343543 TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTA
1 TTGTAAAATTACTAAAATACCCTCGAATTATAAAATTATCAAAATACCCCCAATTTGTAAAATTA
*
63343608 CCAAAATACCCTCAGTTTATAAAATTACCGAACGGA
66 CCAAAATACCCCCAGTTTATAAAATTACCGAACGGA
63343644 TTGTAAAATTA-TCAAAATACCCTCGAATTATAAAATT-TCTAAAATACCCCCAATTTGTAAAAT
1 TTGTAAAATTACT-AAAATACCCTCGAATTATAAAATTATC-AAAATACCCCCAATTTGTAAAAT
*** * *
63343707 TATTGAAATACCCCCAGTTTGTAAATTTAC
64 TACCAAAATACCCCCAGTTTATAAAATTAC
63343737 TAAAATACCC
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
100 3 0.04
101 77 0.96
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (101 bp):
TTGTAAAATTACTAAAATACCCTCGAATTATAAAATTATCAAAATACCCCCAATTTGTAAAATTA
CCAAAATACCCCCAGTTTATAAAATTACCGAACGGA
Found at i:63345900 original size:37 final size:37
Alignment explanation
Indices: 63345850--63345928 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63345840 TTATTACGAA
* * *
63345850 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
63345887 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
63345924 GTCTT
1 GTCTT
63345929 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:63346255 original size:47 final size:47
Alignment explanation
Indices: 63346046--63346413 Score: 637
Period size: 47 Copynumber: 7.7 Consensus size: 47
63346036 GCCCTTCGGG
*
63346046 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
63346096 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
63346145 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
63346194 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63346241 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63346288 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63346335 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63346382 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
63346414 ATACTATCAT
Statistics
Matches: 315, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
47 179 0.57
49 132 0.42
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:63360984 original size:50 final size:50
Alignment explanation
Indices: 63360868--63361043 Score: 234
Period size: 50 Copynumber: 3.6 Consensus size: 50
63360858 TGCAGGTGCT
* * * * ** *
63360868 GATGCCATGTCCCAGACAT-GTCTTACACTAGCACT--TATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGTC
63360915 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGTC
* *
63360965 GATGCCATGTCCC-GAACATGGTCTTACACAAGCTCTAGCATATTTGTGTT
1 GATGCCATGTCCCAG-ACATGGTCTTACACAAGCTCTAGCATATCTGTGTC
63361015 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
63361044 TGCCACCTCT
Statistics
Matches: 115, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
47 19 0.17
48 14 0.12
49 1 0.01
50 80 0.70
51 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGTC
Found at i:63361117 original size:46 final size:45
Alignment explanation
Indices: 63360868--63361318 Score: 299
Period size: 46 Copynumber: 9.6 Consensus size: 45
63360858 TGCAGGTGCT
63360868 GATGCCATGTCCCAGACATGTCTTACACTAGCACTTA--TCTCAATGCC
1 GATG-CATGTCCCAGACATGTCTTACACT-GC-C-TACGTCTCAATGCC
* * * ** *
63360915 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTGTGTC
1 GATG-CATGTCCCAGACAT-GTCTTACAC-TGC-CTA-CGTCTCAATGCC
* * * *** **
63360965 GATGCCATGTCCC-GAACATGGTCTTACACAAGCTCTAGCATATTTGTGTT
1 GATG-CATGTCCCAG-ACAT-GTCTTACAC-TGC-CTA-CGTCTCAATGCC
* *
63361015 GATGCCATGTCCCAGACATGGTCTTACACTGCC-ACCTCTC-GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCCTACGTCTCAAT-GCC
*
63361061 GATGCATGTCCCAAACATGTCTTACACTGCCTTACGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGCC-TACGTCTCAATGCC
* * *
63361107 GATGCATGTCCCAAACATTTCTTACACTAGCACT-CGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACT-GC-CTACGTCTCAATGCC
* * *
63361153 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTCTTGTAA--CC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCCTACGTC-T-CAATGCC
* * * ** *
63361199 GATGCATGTCCCAGGCATGTCTTACACTGGCTTATGTCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCCTACGTCTCAATGCC
* * * *
63361245 GATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCCTACGTCTCAATGCC
63361291 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
63361319 ATCTCACAAT
Statistics
Matches: 349, Mismatches: 33, Indels: 45
0.82 0.08 0.11
Matches are distributed among these distances:
44 25 0.07
45 30 0.09
46 145 0.42
47 41 0.12
48 25 0.07
49 3 0.01
50 79 0.23
51 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGCCTACGTCTCAATGCC
Found at i:63361168 original size:138 final size:137
Alignment explanation
Indices: 63361014--63361318 Score: 418
Period size: 138 Copynumber: 2.2 Consensus size: 137
63361004 ATATTTGTGT
* *
63361014 TGATGCCATGTCCCAGACATGGTCTTACACTGCCACCTCTCGTAGCCGATGCATGTCCCAAACAT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTCGTAACCGATGCATGTCCCAAACAT
* *
63361079 GTCTTACACTGCCTTACGTCTCAATGCCGATGCATGTCCCAAACATTTCTTACACTAGC-ACTCG
66 GTCTTACACTGCCTTACGTCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTA-T-G
*
63361143 TCTCAATGC
129 TCTCAAGGC
* **
63361152 TGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTTGTAACCGATGCATGTCCCAGGCAT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTCGTAACCGATGCATGTCCCAAACAT
* * ** * *
63361217 GTCTTACACTGGCTTATGTCTTGAGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGT
66 GTCTTACACTGCCTTACGTCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGC-TATGT
*
63361282 CTCGAGGC
130 CTCAAGGC
*
63361290 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 TGATGCCATGTCCCAGACATGGTCTTACACT
63361319 ATCTCACAAT
Statistics
Matches: 149, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
136 10 0.07
137 14 0.09
138 123 0.83
139 1 0.01
140 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (137 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTCGTAACCGATGCATGTCCCAAACAT
GTCTTACACTGCCTTACGTCTCAAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTATGTC
TCAAGGC
Found at i:63365143 original size:11 final size:11
Alignment explanation
Indices: 63365127--63365151 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63365117 ACCAAGAGTC
63365127 AAAATGAGCCA
1 AAAATGAGCCA
63365138 AAAATGAGCCA
1 AAAATGAGCCA
63365149 AAA
1 AAA
63365152 GGGGACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.16, G:0.16, T:0.08
Consensus pattern (11 bp):
AAAATGAGCCA
Found at i:63375210 original size:40 final size:40
Alignment explanation
Indices: 63375155--63375331 Score: 286
Period size: 40 Copynumber: 4.5 Consensus size: 40
63375145 GGATGATAAT
63375155 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
63375195 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
63375235 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
63375275 TGGGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
*
63375315 C-GGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
63375332 TACTTGGTTT
Statistics
Matches: 130, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 18 0.14
40 112 0.86
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:63379165 original size:13 final size:13
Alignment explanation
Indices: 63379147--63379171 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63379137 ATTTCATGTC
63379147 AAACTATTGTAAG
1 AAACTATTGTAAG
63379160 AAACTATTGTAA
1 AAACTATTGTAA
63379172 TACTTATGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (13 bp):
AAACTATTGTAAG
Found at i:63379478 original size:50 final size:52
Alignment explanation
Indices: 63379424--63379532 Score: 143
Period size: 50 Copynumber: 2.1 Consensus size: 52
63379414 AATAAAGTAA
**
63379424 TGCATTATGTAACTTTCATGTTAG-TTAAGTATGCATCA-TAAA-TAATGACT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAA-GACT
* * *
63379474 TGCATTATGTAACTCCCATGTTAGTTTAAGTCTGCATTATTAAATTAAGTCT
1 TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
63379526 TGCATTA
1 TGCATTA
63379533 AATAACTCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
50 22 0.43
51 12 0.24
52 14 0.27
53 3 0.06
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (52 bp):
TGCATTATGTAACTCCCATGTTAGTTTAAGTATGCATCATTAAATTAAGACT
Found at i:63379539 original size:52 final size:50
Alignment explanation
Indices: 63379440--63379540 Score: 123
Period size: 52 Copynumber: 2.0 Consensus size: 50
63379430 ATGTAACTTT
**
63379440 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTATGTAACTCC
1 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCC
* * *
63379490 CATGTTAGTTTAAGTCTGCATTATTAAATTAA-GTCTTGCATTAAATAACTC
1 CATGTTAG-TTAAGTATGCATCA-TAAA-TAATGACTTGCATTAAATAACTC
63379541 ATATGTTTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
50 8 0.19
51 12 0.28
52 20 0.47
53 3 0.07
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (50 bp):
CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCC
Done.