Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 198 of 290
Found at i:63379806 original size:24 final size:24
Alignment explanation
Indices: 63379779--63379824 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
63379769 AGTGATTTTT
*
63379779 GGTTACATACAAGGGGGACATTTC
1 GGTTACATACAAGGGAGACATTTC
63379803 GGTTACATACAAGGGAGACATT
1 GGTTACATACAAGGGAGACATT
63379825 ATACATCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (24 bp):
GGTTACATACAAGGGAGACATTTC
Found at i:63382046 original size:22 final size:22
Alignment explanation
Indices: 63381989--63382049 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
63381979 TTCTTCTTAT
* *
63381989 AATGAAAGAAAATGAGAAAAAGA
1 AATGGAAGAAAA-GAAAAAAAGA
* *
63382012 AATTG-AGAGAAGAAAAAAAGA
1 AATGGAAGAAAAGAAAAAAAGA
*
63382033 CATGGAAGAAAAGAAAA
1 AATGGAAGAAAAGAAAA
63382050 GGAAATAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
21 12 0.40
22 15 0.50
23 3 0.10
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.08
Consensus pattern (22 bp):
AATGGAAGAAAAGAAAAAAAGA
Found at i:63382140 original size:18 final size:19
Alignment explanation
Indices: 63382116--63382167 Score: 72
Period size: 18 Copynumber: 2.8 Consensus size: 19
63382106 AATCATGTGT
63382116 GAAAGAAAAGAAAGTTGAA
1 GAAAGAAAAGAAAGTTGAA
*
63382135 -AAAG-AAAGAGAGATTGAA
1 GAAAGAAAAGAAAG-TTGAA
63382153 GAAAGAAAAGAAAGT
1 GAAAGAAAAGAAAGT
63382168 GTCTAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 7 0.25
18 9 0.32
19 5 0.18
20 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.27, T:0.10
Consensus pattern (19 bp):
GAAAGAAAAGAAAGTTGAA
Found at i:63383914 original size:15 final size:16
Alignment explanation
Indices: 63383896--63383925 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63383886 TTTAGGACTT
63383896 TTTTATTT-AATTAAG
1 TTTTATTTAAATTAAG
63383911 TTTTATTTAAATTAA
1 TTTTATTTAAATTAA
63383926 TAAGTTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TTTTATTTAAATTAAG
Found at i:63384100 original size:52 final size:50
Alignment explanation
Indices: 63384001--63384102 Score: 125
Period size: 52 Copynumber: 2.0 Consensus size: 50
63383991 ATGTAACTTT
**
63384001 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTATGTAACTCG
1 CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCG
* * *
63384051 CATGTTAGTTTAAGTATGCATTATTTAATTAA-GTCTTGCATTAAATAACTCG
1 CATGTTAG-TTAAGTATGCATCA--TAAATAATGACTTGCATTAAATAACTCG
63384103 TCTGTTTATT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
50 8 0.18
51 13 0.30
52 17 0.39
53 6 0.14
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (50 bp):
CATGTTAGTTAAGTATGCATCATAAATAATGACTTGCATTAAATAACTCG
Found at i:63387870 original size:24 final size:24
Alignment explanation
Indices: 63387843--63387892 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
63387833 TTCAAGTGAT
*
63387843 TTTCGGTTACATACAAGGGGGACA
1 TTTCGGTTACATACAAGGGAGACA
63387867 TTTCGGTTACATACAAGGGAGACA
1 TTTCGGTTACATACAAGGGAGACA
63387891 TT
1 TT
63387893 ATACATCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (24 bp):
TTTCGGTTACATACAAGGGAGACA
Found at i:63389079 original size:25 final size:23
Alignment explanation
Indices: 63389035--63389083 Score: 55
Period size: 24 Copynumber: 2.0 Consensus size: 23
63389025 ATAGTATACA
63389035 TTTAAATAAATACATCAATTTATT
1 TTTAAATAAATACATCAA-TTATT
*
63389059 TTTATAATAAATTA-ATTAATTATT
1 TTTA-AATAAA-TACATCAATTATT
63389083 T
1 T
63389084 GTGTACGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 10 0.45
25 10 0.45
26 2 0.09
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTAAATAAATACATCAATTATT
Found at i:63391419 original size:8 final size:8
Alignment explanation
Indices: 63391406--63391450 Score: 72
Period size: 8 Copynumber: 5.6 Consensus size: 8
63391396 CTAAATCGGC
63391406 AAAAGCCG
1 AAAAGCCG
63391414 AAAAGCCG
1 AAAAGCCG
*
63391422 AAATGCCG
1 AAAAGCCG
63391430 AAAAGCCG
1 AAAAGCCG
*
63391438 AAATGCCG
1 AAAAGCCG
63391446 AAAAG
1 AAAAG
63391451 TCGGTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.49, C:0.22, G:0.24, T:0.04
Consensus pattern (8 bp):
AAAAGCCG
Found at i:63391431 original size:16 final size:16
Alignment explanation
Indices: 63391410--63391450 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
63391400 ATCGGCAAAA
63391410 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
63391426 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
63391442 GCCGAAAAG
1 GCCGAAAAG
63391451 TCGGTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.44, C:0.24, G:0.27, T:0.05
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:63391909 original size:27 final size:27
Alignment explanation
Indices: 63391869--63391980 Score: 154
Period size: 27 Copynumber: 4.2 Consensus size: 27
63391859 AGGAAGCGTC
* *
63391869 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
63391896 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
63391923 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* **
63391950 CTGGTGACTCTTTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
63391976 CTGGT
1 CTGGT
63391981 AGCCATGCTG
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 14 0.18
27 63 0.82
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:63398292 original size:40 final size:40
Alignment explanation
Indices: 63398218--63398438 Score: 295
Period size: 40 Copynumber: 5.6 Consensus size: 40
63398208 AACCCAAGTA
* * *
63398218 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
63398257 CCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63398297 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
63398337 CCTTCGGGACATAGCCCGGATATAGTCAATAGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63398377 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63398416 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63398439 CATCCGAATA
Statistics
Matches: 158, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
39 37 0.23
40 120 0.76
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63406756 original size:80 final size:78
Alignment explanation
Indices: 63406620--63406839 Score: 275
Period size: 80 Copynumber: 2.8 Consensus size: 78
63406610 AACCCAAGTA
* * *
63406620 CCTTCGTGATTTAGCCGGATATAGCAAACTCGCACAAATG-CTTCGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGC-AACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGT
*
63406684 CACTAGCACAAAAG
65 CAATAGCACAAAAG
*
63406698 CCTTCGGGACTTAGCCCGGATATAAGCAACTCGCACAAACGCCTTCGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATAT-AGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAG
**
63406763 TCAATAGCACAACTG
64 TCAATAGCACAAAAG
* * *
63406778 CCTTCGAGAACTTAGCCGGATATAGTC-ACTAGCAC-CATGCCTTCAGGACTTAGCCCGGATAT
1 CCTTCG-GGACTTAGCCGGATATAG-CAACTCGCACAAATGCCTTC-GGACTTAGCCCGGATAT
63406840 CATCCGAATA
Statistics
Matches: 125, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
78 19 0.15
79 47 0.38
80 52 0.42
81 7 0.06
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGACTTAGCCCGGATATAGTC
AATAGCACAAAAG
Found at i:63406819 original size:39 final size:40
Alignment explanation
Indices: 63406620--63406839 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 40
63406610 AACCCAAGTA
* * *
63406620 CCTTCGTGATTTAG-CCGGATATAG-CAAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC--ACTAGCACAAATG
* *
63406660 -CTTC-GGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63406698 CCTTCGGGACTTAGCCCGGATATAAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATAT-AGTC-ACTAGCACAAATG
* *
63406739 CCTTC-GGACTTAGCCCGGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
63406778 CCTTCGAGAACTTAG-CCGGATATAGTCACTAGCAC-CATG
1 CCTTCG-GGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63406817 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63406840 CATCCGAATA
Statistics
Matches: 152, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
38 23 0.15
39 49 0.32
40 55 0.36
41 25 0.16
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63413069 original size:27 final size:27
Alignment explanation
Indices: 63413038--63413215 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63413028 TAAATTGTAC
63413038 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63413065 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63413091 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63413119 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63413147 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63413174 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63413201 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63413216 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63413152 original size:82 final size:81
Alignment explanation
Indices: 63413039--63413194 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63413029 AAATTGTACA
* *
63413039 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63413103 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63413120 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63413185 TGCGAGTTGA
65 TGCGAATTGA
63413195 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63413206 original size:82 final size:81
Alignment explanation
Indices: 63413035--63413215 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63413025 GATTAAATTG
* *
63413035 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63413100 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63413116 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63413180 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63413198 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63413216 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63414635 original size:47 final size:47
Alignment explanation
Indices: 63414566--63414827 Score: 454
Period size: 47 Copynumber: 5.6 Consensus size: 47
63414556 GGGTGTTACA
63414566 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
63414613 GATAAGGCCAAATGGCCAATGTGAT-AATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
63414659 GATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
* *
63414706 GATAAGGCCGAATGGCCAATGTGATGAATGTGAATATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
* *
63414753 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
*
63414800 GATAAGGCAGAATGGCCAATGTGATGAA
1 GATAAGGCCGAATGGCCAATGTGATGAA
63414828 CGTGGAAGTG
Statistics
Matches: 205, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 44 0.21
47 161 0.79
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
Found at i:63414656 original size:22 final size:22
Alignment explanation
Indices: 63414584--63414657 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
63414574 CGAATGGCCA
63414584 ATGTGATGAATGTGAACATGCAT
1 ATGTGAT-AATGTGAACATGCAT
* **
63414607 ATGTGTGATAAGGCCAA-ATGGCCA-
1 A--TGTGATAATGTGAACAT-G-CAT
63414631 ATGTGATAATGTGAACATGCAT
1 ATGTGATAATGTGAACATGCAT
63414653 ATGTG
1 ATGTG
63414658 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 13
0.67 0.10 0.22
Matches are distributed among these distances:
21 2 0.05
22 17 0.44
23 5 0.13
24 7 0.18
25 8 0.21
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (22 bp):
ATGTGATAATGTGAACATGCAT
Found at i:63414680 original size:24 final size:24
Alignment explanation
Indices: 63414607--63414680 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
63414597 GAACATGCAT
*
63414607 ATGTGTGATAAGGCCAAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* *
63414631 A--TGTGATAATG-TGAACAT-G-CA
1 ATGTGTGATAAGGCCG-A-ATGGCCA
63414652 TATGTGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
63414677 ATGT
1 ATGT
63414681 AATGAATGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 16
0.64 0.09 0.28
Matches are distributed among these distances:
21 2 0.05
22 12 0.32
23 4 0.11
24 16 0.43
25 3 0.08
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:63414730 original size:22 final size:22
Alignment explanation
Indices: 63414703--63414777 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
63414693 CATGCATATG
63414703 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * * *
63414725 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCCGAAT-GGC-CA-A
63414750 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
63414772 TGTGAT
1 TGTGAT
63414778 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:63414752 original size:25 final size:25
Alignment explanation
Indices: 63414724--63414802 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
63414714 CGAATGGCCA
63414724 ATGTGATGAATGTGAATATGCATAT
1 ATGTGATGAATGTGAATATGCATAT
* * * *
63414749 ATGTGAT-AAGGCCGAAT-GGC-CA-
1 ATGTGATGAATG-TGAATATGCATAT
* *
63414771 ATGTGATGAATGTGAACATGTATAT
1 ATGTGATGAATGTGAATATGCATAT
63414796 ATGTGAT
1 ATGTGAT
63414803 AAGGCAGAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 10 0.26
23 5 0.13
24 6 0.15
25 18 0.46
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAATATGCATAT
Found at i:63414824 original size:22 final size:22
Alignment explanation
Indices: 63414703--63414824 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
63414693 CATGCATATG
*
63414703 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
* * * *
63414725 TGTGATGAATG-TGAATATGCATATA
1 TGTGAT-AAGGCAGAAT-GGC-CA-A
*
63414750 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
***
63414772 TGTGATGAATGTG-A-ACATGTATATA
1 TGTGAT-AA-G-GCAGA-ATGGCCA-A
63414797 TGTGATAAGGCAGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
63414819 TGTGAT
1 TGTGAT
63414825 GAACGTGGAA
Statistics
Matches: 73, Mismatches: 15, Indels: 24
0.65 0.13 0.21
Matches are distributed among these distances:
22 25 0.34
23 15 0.21
24 14 0.19
25 19 0.26
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCAGAATGGCCAA
Found at i:63414840 original size:47 final size:47
Alignment explanation
Indices: 63414566--63414867 Score: 446
Period size: 47 Copynumber: 6.4 Consensus size: 47
63414556 GGGTGTTACA
*
63414566 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
* *
63414613 GATAAGGCCAAATGGCCAATGTGAT-AATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
* *
63414659 GATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
*
63414706 GATAAGGCCGAATGGCCAATGTGATGAATGTGAATATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
*
63414753 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
* * * *
63414800 GATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATATGT
* * * *
63414847 GGTAAAGCCTAATGGCTAATG
1 GATAAGGCCGAATGGCCAATG
63414868 CGAAACGTGT
Statistics
Matches: 237, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
46 44 0.19
47 190 0.80
48 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
Found at i:63414897 original size:46 final size:46
Alignment explanation
Indices: 63414841--63415023 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
63414831 GGAAGTGTAT
* * *
63414841 ATATGTGGTAAAGCCTAATGGCTAATGCGAAACGTGTATGAGATAG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
63414887 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGGTGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
63414933 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
63414979 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
63415024 TGTATATATA
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 124 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:63418241 original size:27 final size:27
Alignment explanation
Indices: 63418205--63418590 Score: 495
Period size: 27 Copynumber: 14.3 Consensus size: 27
63418195 TAAAACACAA
63418205 TCATTTTACCTCATAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* *
63418232 TCATTTTACCACATAATGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
63418259 TCATTTTACCTCATAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* * *
63418286 TCATTATACCTCATAAAGGGTAAAATAG
1 TCATTTTACCTCAT-AAGGGCAAAACAG
* * * *
63418314 TCATTATACCTCACAAGGGTAAAATAG
1 TCATTTTACCTCATAAGGGCAAAACAG
**
63418341 TCATTTTACCAAATAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* ** *
63418368 TTATTTTACCAAATAAGAGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* * * *
63418395 TCATTTTACCTCACAAAGGCAAAATAA
1 TCATTTTACCTCATAAGGGCAAAACAG
*
63418422 TCATTTTACCTCATAAGGGCAAAATAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* *
63418449 TCA-TTTACCACATAAGGGCAAAATAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* *
63418475 TCATTTTACCTCACAAGGGGAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
* *
63418502 TTATTTTACCTCATAAGGGCAAAACAA
1 TCATTTTACCTCATAAGGGCAAAACAG
* *
63418529 TCATTTTACCACAAAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAG
*
63418556 TCATTTTACCTCATAAGGGCAAAACAA
1 TCATTTTACCTCATAAGGGCAAAACAG
63418583 TCATTTTA
1 TCATTTTA
63418591 TTAATTTGGG
Statistics
Matches: 314, Mismatches: 43, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 25 0.08
27 265 0.84
28 24 0.08
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (27 bp):
TCATTTTACCTCATAAGGGCAAAACAG
Found at i:63436455 original size:68 final size:68
Alignment explanation
Indices: 63436305--63436462 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
63436295 CTAGCCAATT
* * *
63436305 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
63436370 TTTA
65 CATA
* * *
63436374 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
63436436 CTACATA
63 C-ACATA
63436443 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
63436463 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:63450938 original size:16 final size:16
Alignment explanation
Indices: 63450919--63450949 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
63450909 CTTCTTCACT
63450919 TACTTACTTACTTAAA
1 TACTTACTTACTTAAA
63450935 TACTTACTTACTTAA
1 TACTTACTTACTTAA
63450950 CCAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TACTTACTTACTTAAA
Found at i:63451331 original size:55 final size:54
Alignment explanation
Indices: 63451188--63451395 Score: 224
Period size: 55 Copynumber: 3.8 Consensus size: 54
63451178 ATCCTTTTGA
* * *
63451188 AACTTACCATTGCCATGTGTCGACATGGTCTTACATGGCATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAG
* * * *
63451241 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGCATCC-TTGCCTTATAG
* * * *
63451295 TAACTTATCAATGCCATGTCTTGACATAGTTTTACATGGTATCCTTGCCTTATA-
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAG
* * * *
63451349 AACCTTACCAATAACCATGCCTTGTCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAAT-GCCATGTCTTGACATGGTCTTACATGGCATCCTT
63451396 AAACCCTAAT
Statistics
Matches: 129, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 9 0.07
55 72 0.56
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGCATCCTTGCCTTATAG
Found at i:63451339 original size:108 final size:110
Alignment explanation
Indices: 63451188--63451388 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 110
63451178 ATCCTTTTGA
* * * *
63451188 AACTTACCATTGCCATGTGTCGACATGGTCTTACATGGCATCCTTGCCTTATGAA-CTCACCAAT
1 AACTTACCAATGCCATGTCTCGACATAGTCTTACATGGCATCCTTGCCTTATAAACCTCACCAAT
*
63451252 -GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 AACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * *
63451296 AACTTATCAATGCCATGTCTTGACATAGTTTTACATGGTATCCTTGCCTTATAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTCGACATAGTCTTACATGGCATCCTTGCCTTATAAACCTCACCAAT
*
63451361 AACCATGCCTTGTCATGGTCTTACATGG
66 AACCATGCCTTGGCATGGTCTTACATGG
63451389 TATCCTTAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 47 0.59
109 8 0.10
110 25 0.31
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATAGTCTTACATGGCATCCTTGCCTTATAAACCTCACCAAT
AACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:63471501 original size:43 final size:43
Alignment explanation
Indices: 63471361--63471529 Score: 173
Period size: 43 Copynumber: 4.0 Consensus size: 43
63471351 ATATCGTACA
* ** ** * *
63471361 ATGCCAACGTCCCAGATGTGGTCTTACATGGTATCTCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAATCACATATCG
* * * * *
63471404 ATGCCACTATCCCAGATAGGGTCTTACAC-GAATCAAATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAATCACATATCG
* * *
63471445 ATGCCGATGTCCCAGACATGGCCTTACACATAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAATCACATATCG
63471488 ATGCCAATGTCCCAGACATGGTCTTACACGAGAAT-ACATATC
1 ATGCCAATGTCCCAGACATGGTCTTACAC-AGAATCACATATC
63471530 AGAAACCCTA
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
41 24 0.23
42 17 0.17
43 58 0.56
44 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAGAATCACATATCG
Found at i:63475806 original size:40 final size:40
Alignment explanation
Indices: 63475758--63475909 Score: 277
Period size: 40 Copynumber: 3.8 Consensus size: 40
63475748 GGACTAAGAT
* *
63475758 CCGAAGGCATTTGTACGAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
63475798 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
63475838 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
63475878 CCGAAGGCATTTGTGCGAGTTGCTATATCCGG
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGG
63475910 ATAAATCTCG
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:63477821 original size:40 final size:40
Alignment explanation
Indices: 63477771--63477857 Score: 165
Period size: 40 Copynumber: 2.1 Consensus size: 40
63477761 TAACGCTTAG
63477771 TAAGTCTGTAACACATAAACGATGCTTACCAATACAATGCA
1 TAAG-CTGTAACACATAAACGATGCTTACCAATACAATGCA
63477812 TAAGCTGTAACACATAAACGATGCTTACCAATACAATGCA
1 TAAGCTGTAACACATAAACGATGCTTACCAATACAATGCA
63477852 TAAGCT
1 TAAGCT
63477858 TAAAATAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (40 bp):
TAAGCTGTAACACATAAACGATGCTTACCAATACAATGCA
Found at i:63478112 original size:29 final size:29
Alignment explanation
Indices: 63478066--63478121 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
63478056 AATGGAATAA
*
63478066 TGATGGTCGTCACAATCCCTTTTCATAGC
1 TGATGGTCATCACAATCCCTTTTCATAGC
*
63478095 TGATGGTCATCACCATCCCTTTTCATA
1 TGATGGTCATCACAATCCCTTTTCATA
63478122 ATCAACAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (29 bp):
TGATGGTCATCACAATCCCTTTTCATAGC
Found at i:63478141 original size:29 final size:29
Alignment explanation
Indices: 63478109--63478208 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
63478099 GGTCATCACC
*
63478109 ATCCCTTTTCATAATCAACAGCCGAAGCT
1 ATCCCTTTTCATAATCAATAGCCGAAGCT
* * * * * * *
63478138 ATCCCTTTTCGTATTTAATGGTCGTCA-CC
1 ATCCCTTTTCATAATCAATAGCCG-AAGCT
*
63478167 ATCCCTTTTTCATAATCGATAGCCGAAGCT
1 ATCCC-TTTTCATAATCAATAGCCGAAGCT
63478197 ATCCCTTTTCAT
1 ATCCCTTTTCAT
63478209 TGGTCGATGA
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
29 32 0.62
30 20 0.38
ACGTcount: A:0.24, C:0.29, G:0.11, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATAATCAATAGCCGAAGCT
Found at i:63480825 original size:21 final size:21
Alignment explanation
Indices: 63480799--63480838 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63480789 GGTGAAAATT
*
63480799 GTAACCCCATGTCGCAACACC
1 GTAACCCCATATCGCAACACC
*
63480820 GTAACCCCATATCGTAACA
1 GTAACCCCATATCGCAACA
63480839 TCAAGGGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.38, G:0.12, T:0.17
Consensus pattern (21 bp):
GTAACCCCATATCGCAACACC
Found at i:63485433 original size:40 final size:40
Alignment explanation
Indices: 63485332--63485515 Score: 241
Period size: 40 Copynumber: 4.6 Consensus size: 40
63485322 TGGATGATAA
* ** * *
63485332 CCGGGCTAAGTCCCGAAGGCATTTGCGCTACTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTA-TAT
63485372 CCGGGC-AAGTCCCGAAGGCATTTGTGAGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAT
*
63485411 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGAG-AGTTACTATAT
*
63485451 CCGGGCTAAGTCCCGAAGGCATTTGTGCA-AGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-AGAGTTACTATAT
*
63485491 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63485516 AGCAGTAGCT
Statistics
Matches: 130, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.26
40 93 0.72
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAT
Found at i:63485495 original size:80 final size:77
Alignment explanation
Indices: 63485328--63485531 Score: 277
Period size: 80 Copynumber: 2.6 Consensus size: 77
63485318 TATTTGGATG
* *
63485328 ATAACCGGGCTAAGTCCCGAAGGCATTTGCGCTACTGACTAGT-TCCGGGCAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGC-AGT-ACTA-TATCCGGGCAAGTCCCGAAGGCA
63485392 TTTGTGAGAGTTACT
63 TTTGTGAGAGTTACT
* *
63485407 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGC--AGTACTATATCCGGGC-AAGTCCCGAAGGCA
63485472 TTTGTGCA-AGTTACT
63 TTTGTG-AGAGTTACT
*
63485487 ATAACCGGGCTAAGTCCCAAAGGCATTTGAGCAGTAGCTATATCC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTA-CTATATCC
63485532 AGCTAAACCC
Statistics
Matches: 113, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
78 5 0.04
79 49 0.43
80 58 0.51
81 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (77 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTACTATATCCGGGCAAGTCCCGAAGGCATTT
GTGAGAGTTACT
Found at i:63486949 original size:22 final size:22
Alignment explanation
Indices: 63486915--63486972 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
63486905 AATACGATTG
*
63486915 GCACAAAGCCATAATCAAGATA
1 GCACAGAGCCATAATCAAGATA
* * * * *
63486937 GCATAGAGCCATATTTAGGATG
1 GCACAGAGCCATAATCAAGATA
63486959 GCACAGAGCCATAA
1 GCACAGAGCCATAA
63486973 ACAGATTAAG
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (22 bp):
GCACAGAGCCATAATCAAGATA
Found at i:63492641 original size:23 final size:23
Alignment explanation
Indices: 63492611--63492686 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
63492601 TAGGTCATTG
63492611 GAGCTTACCATTTCAGCTCG-TA
1 GAGCTTACCATTTCAGCTCGATA
*
63492633 TGAGCTTA-C-TGTTCAACTCGATA
1 -GAGCTTACCAT-TTCAGCTCGATA
* * *
63492656 GAGCCTACCATTTTAGCTCAATA
1 GAGCTTACCATTTCAGCTCGATA
63492679 GAGCTTAC
1 GAGCTTAC
63492687 TGTTTATCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 1 0.02
22 15 0.35
23 26 0.60
24 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (23 bp):
GAGCTTACCATTTCAGCTCGATA
Found at i:63494902 original size:28 final size:28
Alignment explanation
Indices: 63494870--63494989 Score: 204
Period size: 28 Copynumber: 4.3 Consensus size: 28
63494860 ATGGGAGTAG
* *
63494870 TTGGGCCTAATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
63494898 TTGGGCCTGATGGGCCATGTGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
63494926 TTGGGCCTGATGGGCCATGTGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
* *
63494954 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATGTGAATGTGA
63494982 TTGGGCCT
1 TTGGGCCT
63494990 AAAGGGGCCA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATGTGAATGTGA
Found at i:63495336 original size:27 final size:27
Alignment explanation
Indices: 63495306--63495564 Score: 258
Period size: 27 Copynumber: 9.7 Consensus size: 27
63495296 TAATAAAGAG
*
63495306 AAATTACCAAAATACCCCCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
63495333 AAATTACCGAAGTACCC-CCAGTTTGT-
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
63495359 AAATTATCGAAAA-ACCCTCAATTTGTA
1 AAATTA-CCAAAATACCCTCGATTTGTA
*
63495386 AAATTACCAAAATACCCTCGA-TTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
*
63495412 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
63495439 AAATTATCAAAATACCCTCAATTTCTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
63495466 AAATTACCAAAATACCTTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * * *
63495493 AAATTATCGAAATGCCTTTGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
63495520 AAATTACCGAAACAGCCC-CGATTTGTA
1 AAATTACCAAAATA-CCCTCGATTTGTA
* *
63495547 AAATTATCGAAATACCCT
1 AAATTACCAAAATACCCT
63495565 TGTAGTGTAA
Statistics
Matches: 193, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 49 0.25
27 142 0.74
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:63495573 original size:27 final size:28
Alignment explanation
Indices: 63495555--63495608 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
63495545 TAAAATTATC
63495555 GAAATACCCTTGT-AGTGTAAAATGACT
1 GAAATACCCTTGTAAGTGTAAAATGACT
*
63495582 GACATACCCTTGTAAG-GTAAAATGACT
1 GAAATACCCTTGTAAGTGTAAAATGACT
63495609 ATTTTACCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.28
Consensus pattern (28 bp):
GAAATACCCTTGTAAGTGTAAAATGACT
Found at i:63500621 original size:49 final size:49
Alignment explanation
Indices: 63500516--63500644 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
63500506 CTTCGGGACT
* * * **
63500516 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACACTTTCACATCCATCACATCGGCCACTAAGCCC
* * *
63500563 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCT
1 TATCACATATATACACACTTTCACATCCATCACATCGGCCACTAAGCCC
* *
63500612 TATCTCATATAT--GCA-TGTTCACATCCATCACAT
1 TATCACATATATACACACT-TTCACATCCATCACAT
63500645 AGAATCCTAA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 25 0.37
48 1 0.01
49 41 0.60
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (49 bp):
TATCACATATATACACACTTTCACATCCATCACATCGGCCACTAAGCCC
Found at i:63504535 original size:40 final size:40
Alignment explanation
Indices: 63504476--63504632 Score: 170
Period size: 40 Copynumber: 3.9 Consensus size: 40
63504466 CGAATACACG
* * * *
63504476 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
63504516 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * *
63504556 TCACTAGCACGAATGCTCTTCGGAACTTATCCCAGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
63504596 TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
63504633 TTAGTAACTT
Statistics
Matches: 94, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:63504632 original size:80 final size:82
Alignment explanation
Indices: 63504521--63504711 Score: 196
Period size: 80 Copynumber: 2.4 Consensus size: 82
63504511 ATATAACACC
* ** * * * *
63504521 AGCACGAATGCTCTTTGGGGTTTAGCACGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAGTAACTAGCACCAATGC-CCTCGGAACTTA
63504585 -TCCCAGATA-CATCAC-T
65 GT-CCAGATATCATCACTT
* * * *
63504601 AGCACGAATGCTCCTCGGGACTTAGCCCGGATTTAGTAACTTGCACCAATGCCCTCGGATCTTAG
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAGTAACTAGCACCAATGCCCTCGGAACTTAG
**
63504666 TCCAGATATGGTCACTT
66 TCCAGATATCATCACTT
*
63504683 AGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGA
63504712 CATCATTCGA
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
80 64 0.70
81 22 0.24
82 6 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAGTAACTAGCACCAATGCCCTCGGAACTTAG
TCCAGATATCATCACTT
Found at i:63504657 original size:40 final size:41
Alignment explanation
Indices: 63504600--63504711 Score: 113
Period size: 40 Copynumber: 2.8 Consensus size: 41
63504590 GATACATCAC
* *
63504600 TAGCACGAATGCTCCTCGGGACTTAGCCCGGATTTAGTAACT
1 TAGCACCAATGC-CCTCGGGACTTAGCCCGGATATAGTAACT
* * * *
63504642 T-GCACCAATGCCCTC-GGATCTTAGTCCAGATATGGTCACT
1 TAGCACCAATGCCCTCGGGA-CTTAGCCCGGATATAGTAACT
* *
63504682 TAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 TAGCACCAATGCCCTCGGGACTTAGCCCGGA
63504712 CATCATTCGA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
39 3 0.05
40 38 0.67
41 15 0.26
42 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (41 bp):
TAGCACCAATGCCCTCGGGACTTAGCCCGGATATAGTAACT
Found at i:63505056 original size:29 final size:29
Alignment explanation
Indices: 63505017--63505095 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
63505007 CTTAATAATC
*
63505017 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
63505047 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
63505076 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
63505096 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:63505125 original size:43 final size:43
Alignment explanation
Indices: 63505077--63505222 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
63505067 TGCATTTCAA
63505077 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
*
63505120 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
63505163 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
63505206 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
63505223 TGAAAACCAA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.28, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:63507373 original size:47 final size:48
Alignment explanation
Indices: 63507248--63507376 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 48
63507238 CTTCGGGACT
* * * *
63507248 TATCACATTTAT-ACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATAACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * *
63507295 TATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATA-ACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
63507344 TATCTCATATAT-GCA-TGTTCACATCCATCACAT
1 TATCACATATATAACACT-TTCACATCCATCACAT
63507377 AGAATCCTAA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 1 0.01
47 28 0.41
49 40 0.58
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (48 bp):
TATCACATATATAACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:63510834 original size:40 final size:40
Alignment explanation
Indices: 63510722--63510900 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
63510712 ACCCAAGTAT
* *
63510722 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
63510761 CTTCGGGTCTTAGCCCGG--ATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
63510799 CTTCGGGACTTAGCCCGGATATAGTTATTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
63510839 CTTCGGGACTTAGCCCGGTTATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
63510879 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63510901 CATTCGAATA
Statistics
Matches: 125, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 34 0.27
39 12 0.10
40 79 0.63
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:63516981 original size:54 final size:54
Alignment explanation
Indices: 63516895--63517092 Score: 317
Period size: 54 Copynumber: 3.7 Consensus size: 54
63516885 TGGAGGAAGC
* *
63516895 GTCCTGGTGGCTATGCCACAAATATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
63516949 GTCCTGATGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
63517003 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
63517057 GTCCTGGTGGCTCTGCCACAA-TATCAGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
63517093 ACTTCGTCAC
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
53 4 0.03
54 129 0.97
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:63517090 original size:27 final size:27
Alignment explanation
Indices: 63516898--63517110 Score: 197
Period size: 27 Copynumber: 7.9 Consensus size: 27
63516888 AGGAAGCGTC
* *
63516898 CTGGTGGCTATGCCACAAATATCT-AAT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
*
63516925 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
63516952 CTGATGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
63516979 CTGGTGGCTCTGCCATATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
63517006 CTGGTGGCTATGCCACAATTATTTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
63517033 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
63517060 CTGGTGGCTCTGCCACAATATCAGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
63517087 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
63517111 GCAGCCTCGC
Statistics
Matches: 152, Mismatches: 22, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
26 11 0.07
27 139 0.91
28 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:63520132 original size:42 final size:42
Alignment explanation
Indices: 63520028--63520134 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
63520018 GATTTCATGT
* **
63520028 AGACCACGTCTGGGACATGGCATCGAAATGAGATTTCGTATA
1 AGACCACGTCTGGGACATGGCATCGAAATGAAATCCCGTATA
** * * * ** *
63520070 AGACCATATCCGAGATATGGCATCGATGTGAAATCCCGTGTA
1 AGACCACGTCTGGGACATGGCATCGAAATGAAATCCCGTATA
63520112 AGACCACGTCTGGGACATGGCAT
1 AGACCACGTCTGGGACATGGCAT
63520135 TGGCATCGTA
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.22
Consensus pattern (42 bp):
AGACCACGTCTGGGACATGGCATCGAAATGAAATCCCGTATA
Found at i:63522533 original size:43 final size:43
Alignment explanation
Indices: 63522464--63522584 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
63522454 ATCACATATT
* *** *
63522464 GATGCCACTGTCCCAGACAAAATCTTACACG-AA-ATCGATTAAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATC-AAT-AC
63522507 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
* * *
63522550 AATGCCAATGCCCCAGACATGGTCTTACATGTAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAAT
63522585 CACATCTCGA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 61 0.90
44 4 0.06
45 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
Found at i:63526910 original size:47 final size:47
Alignment explanation
Indices: 63526856--63526983 Score: 202
Period size: 47 Copynumber: 2.7 Consensus size: 47
63526846 TTAGGATTTT
** *
63526856 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
* *
63526903 ATGTGATGAATGTGAGCATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
*
63526950 ATGTGATGAATGTGAACATGCATATATGTGATAA
1 ATGTGATGAATGTGAACATGCATATATGAGATAA
63526984 TGTGACAGCC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
Found at i:63528867 original size:27 final size:27
Alignment explanation
Indices: 63528836--63529013 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63528826 TAAATTGTAC
63528836 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63528863 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63528889 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63528917 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63528945 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63528972 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63528999 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63529014 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63528950 original size:82 final size:81
Alignment explanation
Indices: 63528837--63528992 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63528827 AAATTGTACA
* *
63528837 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63528901 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63528918 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63528983 TGCGAGTTGA
65 TGCGAATTGA
63528993 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63529004 original size:82 final size:81
Alignment explanation
Indices: 63528833--63529013 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63528823 GATTAAATTG
* *
63528833 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63528898 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63528914 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63528978 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63528996 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63529014 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63541690 original size:42 final size:42
Alignment explanation
Indices: 63541586--63541692 Score: 101
Period size: 42 Copynumber: 2.5 Consensus size: 42
63541576 GATTTCATGT
**
63541586 AGACCACGTCTGGGACATGGCATCGAAATAAGATTTCGTATA
1 AGACCACGTCTGGGACATGGCATCGAAATAAGATCCCGTATA
** * * * * *
63541628 AGACCATATCCGAGATATGGCATC-AATGTGAA-ATCCCGTGTA
1 AGACCACGTCTGGGACATGGCATCGAA-AT-AAGATCCCGTATA
63541670 AGACCACGTCTGGGACATGGCAT
1 AGACCACGTCTGGGACATGGCAT
63541693 TGGCATCGTA
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
41 2 0.04
42 45 0.92
43 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (42 bp):
AGACCACGTCTGGGACATGGCATCGAAATAAGATCCCGTATA
Found at i:63544089 original size:43 final size:43
Alignment explanation
Indices: 63544020--63544140 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
63544010 ATCACATATT
* *** *
63544020 GATGCCACTGTCCCAGACAAAATCTTACACG-AA-ATCGATTAAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATC-AAT-AC
63544063 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
* * *
63544106 AATGCCAATGCCCCAGACATGGTCTTACATGTAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGTAAT
63544141 CACATCTCGA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 61 0.90
44 4 0.06
45 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGTAATATCAATAC
Found at i:63548515 original size:47 final size:47
Alignment explanation
Indices: 63548461--63548884 Score: 647
Period size: 47 Copynumber: 9.1 Consensus size: 47
63548451 TTAGGATTTT
** * * *
63548461 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63548508 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63548555 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63548602 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63548649 ATGTGAT-AATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
63548695 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63548742 ATGTGATGAATGTGAATATGCATATATGTGATAA-GCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63548788 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
63548835 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
63548882 ATG
1 ATG
63548885 CGAAACGTGT
Statistics
Matches: 354, Mismatches: 20, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 90 0.25
47 261 0.74
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:63548698 original size:24 final size:24
Alignment explanation
Indices: 63548625--63548699 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
63548615 GAACATGCAT
63548625 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* *
63548649 A--TGTGATAATG-TGAACAT-G-CA
1 ATGTGTGATAAGGCCG-A-ATGGCCA
63548670 TATGTGTGATAAGGCCGAATGGCCA
1 -ATGTGTGATAAGGCCGAATGGCCA
63548695 ATGTG
1 ATGTG
63548700 ATGAATGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
21 3 0.08
22 12 0.31
23 4 0.10
24 17 0.44
25 3 0.08
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:63548704 original size:140 final size:141
Alignment explanation
Indices: 63548461--63548884 Score: 656
Period size: 140 Copynumber: 3.0 Consensus size: 141
63548451 TTAGGATTTT
* * * *
63548461 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
63548526 TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
63548591 CCGAATGGCCA
131 CCGAATGGCCA
* *
63548602 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGAT-AATGTGAACA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
63548666 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
*
63548731 CTGAATGGCCA
131 CCGAATGGCCA
63548742 ATGTGATGAATGTGAATATGCATATATGTGATAA-GCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * * * *
63548806 TGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGTAAA
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATGCATATATGTGATAAG
* *
63548870 GCCAAATGGCTA
130 GCCGAATGGCCA
63548882 ATG
1 ATG
63548885 CGAAACGTGT
Statistics
Matches: 258, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
139 19 0.07
140 188 0.73
141 51 0.20
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGG
CCGAATGGCCA
Found at i:63548707 original size:93 final size:94
Alignment explanation
Indices: 63548461--63548884 Score: 647
Period size: 93 Copynumber: 4.5 Consensus size: 94
63548451 TTAGGATTTT
** * * *
63548461 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
63548526 TGCATATATGAGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
63548555 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
63548620 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
63548649 ATGTGAT-AATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
63548713 TGCATATGTGTGATAAGGCTGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
63548742 ATGTGATGAATGTGAATATGCATATATGTGATAA-GCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
63548806 TGCATATATGTGATAAGGCAGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
63548835 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCAAATGGCTAATG
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
63548885 CGAAACGTGT
Statistics
Matches: 308, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
93 174 0.56
94 134 0.44
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:63548908 original size:93 final size:93
Alignment explanation
Indices: 63548721--63549025 Score: 223
Period size: 93 Copynumber: 3.3 Consensus size: 93
63548711 CATGCATATG
* * * * *
63548721 TGTGATAAGGCTGAATGGCCAATGTGATGAATGT-GAATATGCATATATGTGAT-AAGCCGAATG
1 TGTGATAAGGCAGAATGGCCAATGTGATGAAAGTGGAA-GTGTATATATGTGGTAAAGCCGAATG
* * * * *
63548784 GCCAATGTGATGAATGTG-A--ACATGCATATA
65 GCTAATGCGA--AACGTGTATGAGAT--AGATA
* *
63548814 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGGTAAAGCCAAATGG
1 TGTGATAAGGCAGAATGGCCAATGTGATGAAAGTGGAAGTGTATATATGTGGTAAAGCCGAATGG
63548879 CTAATGCGAAACGTGTATGAGATAGATA
66 CTAATGCGAAACGTGTATGAGATAGATA
* * * * * * * *** *
63548907 TGAGGTAAAGCCGAATGGCTAATGCGA--AAAGTGTATGAG-GTGGCTATGAGGTAAAGCCGAAT
1 TGTGATAAGGCAGAATGGCCAATGTGATGAAAGTGGA--AGTGTATATATGTGGTAAAGCCGAAT
* *
63548969 GGCTAATGCGAAACGTGTATGGGATGGATA
64 GGCTAATGCGAAACGTGTATGAGATAGATA
* * *
63548999 TGTGGTAAAGCCA-AATGGCTAATGTGA
1 TGTGAT-AAGGCAGAATGGCCAATGTGA
63549026 GATATGTATG
Statistics
Matches: 173, Mismatches: 31, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
91 6 0.03
92 69 0.40
93 75 0.43
94 20 0.12
95 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.25
Consensus pattern (93 bp):
TGTGATAAGGCAGAATGGCCAATGTGATGAAAGTGGAAGTGTATATATGTGGTAAAGCCGAATGG
CTAATGCGAAACGTGTATGAGATAGATA
Found at i:63548914 original size:46 final size:46
Alignment explanation
Indices: 63548858--63549040 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
63548848 GGAAGTGTAT
* *
63548858 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATAG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * *
63548904 ATATGAGGTAAAGCCGAATGGCTAATGCGAAAAGTGTATGAGGTGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * *
63548950 CTATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGGGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
* * * **
63548996 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATG
63549041 TGTATATATA
Statistics
Matches: 120, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 120 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:63548918 original size:140 final size:140
Alignment explanation
Indices: 63548484--63548930 Score: 552
Period size: 140 Copynumber: 3.2 Consensus size: 140
63548474 GAATGTGTAT
* * *
63548484 ATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAA
1 ATATGAGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAA
63548549 TGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
66 TGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA-GAATG
63548614 TG-A--ACATG
130 TGTATGACATG
* * *
63548622 CATATGTGTGATAAGGCCGAATGGCCAATGTGAT-AATGTGAACATGCATATGTGTGATAAGGCC
1 -ATA--TGAGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCC
* *
63548686 GAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGA
63 GAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA-GA
63548751 ATGTGAATATG-CAT-
127 ATGTG--TATGACATG
* *
63548765 ATATGTGAT-AAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAA
1 ATATGAGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAA
* * * * * * * * *
63548829 TGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCAAATGGCTAATGCGA-AACG
66 TGGCCAATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGAGAATG
*
63548892 TGTATGAGATAG
130 TGTATGACAT-G
* *
63548904 ATATGAGGTAAAGCCGAATGGCTAATG
1 ATATGAGATAAAGCCGAATGGCCAATG
63548931 CGAAAAGTGT
Statistics
Matches: 271, Mismatches: 24, Indels: 25
0.85 0.08 0.08
Matches are distributed among these distances:
136 4 0.01
137 2 0.01
138 5 0.02
139 30 0.11
140 194 0.72
141 29 0.11
142 3 0.01
143 1 0.00
144 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (140 bp):
ATATGAGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAA
TGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGAGAATGT
GTATGACATG
Found at i:63554180 original size:6 final size:6
Alignment explanation
Indices: 63554162--63554261 Score: 98
Period size: 6 Copynumber: 16.3 Consensus size: 6
63554152 AAGAAACATT
*
63554162 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
63554209 GTGACAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
63554260 AT
1 AT
63554262 GGGAATGCAA
Statistics
Matches: 78, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
5 4 0.05
6 66 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:63554220 original size:31 final size:31
Alignment explanation
Indices: 63554162--63554261 Score: 125
Period size: 31 Copynumber: 3.3 Consensus size: 31
63554152 AAGAAACATT
63554162 ATCAGAA-CTAGAATCA-G-AATCAGAATCAGA
1 ATCAGAATC-AGAATCAGGTAA-CAGAATCAGA
* *
63554192 ATCAGAATCAGAATTAGGTGACAGAATCAGA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
* *
63554223 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTAACAGAATCAGA
63554254 ATCAGAAT
1 ATCAGAAT
63554262 GGGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
30 13 0.21
31 47 0.77
32 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTAACAGAATCAGA
Found at i:63555473 original size:27 final size:27
Alignment explanation
Indices: 63555443--63555534 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
63555433 ATTACCAAAG
* *
63555443 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
63555470 TACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
63555497 TACCCTTGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-GTTT
63555524 TACCCTCGATT
1 TACCCTCGATT
63555535 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:63555596 original size:27 final size:27
Alignment explanation
Indices: 63555566--63555689 Score: 180
Period size: 27 Copynumber: 4.6 Consensus size: 27
63555556 TATAGGGTAG
63555566 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
63555593 AATTATCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
63555620 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
63555647 AATTACCAAAATACCCCT-GATTTGTGA
1 AATTACCAAAATACCCCTAG-TTTGTAA
63555674 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
63555690 TCAACCTGTA
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
26 2 0.02
27 88 0.98
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:63555671 original size:54 final size:53
Alignment explanation
Indices: 63555533--63555743 Score: 192
Period size: 54 Copynumber: 3.9 Consensus size: 53
63555523 TTACCCTCGA
* ** ** * *
63555533 TTGTGAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAT-TTGTAAAATTACCAAAATACCCCTAAT
*
63555587 TTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTA-TTTGTAAAATTACCAAAATACCCCTAAT
* * *
63555641 TTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTA-CAGAAATA-CCCTCAAC
1 TTGTAAAATTACCAAAATACCCCT-ATTTGTAAAATTACCA-AAATACCCCT-AAT
* *** * * *
63555695 CTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCC
1 TTGTAAAATTACCAAAATACCC-CTATTTGTAAAATTACCAAAATACCC
63555744 TTGATTTACA
Statistics
Matches: 129, Mismatches: 21, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
53 6 0.05
54 116 0.90
55 7 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (53 bp):
TTGTAAAATTACCAAAATACCCCTATTTGTAAAATTACCAAAATACCCCTAAT
Found at i:63555700 original size:81 final size:81
Alignment explanation
Indices: 63555566--63555750 Score: 198
Period size: 81 Copynumber: 2.3 Consensus size: 81
63555556 TATAGGGTAG
***
63555566 AATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTATCAAAATACCCCTAACCTGTAAAATTACCAAA
* *
63555630 ATACCC-CTAATTTGTGA
65 ATACCCTC-AACTTGTAA
* ***
63555647 AATTACCAAAATACCCCTGATTTGTGAAATTA-CAGAAATA-CCCTCAACCTGTAAAATTATTGA
1 AATTACCAAAATACCCCTGATTTGTAAAATTATCA-AAATACCCCT-AACCTGTAAAATTACCAA
*
63555710 AATACCCTCGACTTGTAA
64 AATACCCTCAACTTGTAA
* *
63555728 AATTACCAAAGTACCCTTGATTT
1 AATTACCAAAATACCCCTGATTT
63555751 ACAGAATTAC
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
80 6 0.07
81 80 0.91
82 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCTAACCTGTAAAATTACCAAAA
TACCCTCAACTTGTAA
Found at i:63555744 original size:27 final size:26
Alignment explanation
Indices: 63555566--63555743 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 26
63555556 TATAGGGTAG
*
63555566 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCC-AATTTGTAA
* *
63555593 AATTATCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCC-AATTTGTAA
*
63555620 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCC-AATTTGTAA
* *
63555647 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCC-AATTTGTAA
**
63555674 AATTA-CAGAAATACCCTCAACCTGTAA
1 AATTACCA-AAATACCC-CAATTTGTAA
*** * *
63555701 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCC-CAATTTGTAA
*
63555728 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
63555744 TTGATTTACA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.02
27 128 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCCAATTTGTAA
Found at i:63555758 original size:27 final size:26
Alignment explanation
Indices: 63555726--63555800 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
63555716 CTCGACTTGT
63555726 AAAATTACCAAAGTACCCTTGATTTAC
1 AAAATTACCAAA-TACCCTTGATTTAC
* **
63555753 AGAATTACCATTTTACCCTTGATTTAC
1 AAAATTACCA-AATACCCTTGATTTAC
*
63555780 AAAATTACTGAAATACCCTTG
1 AAAATTAC-CAAATACCCTTG
63555801 TAGGGTAGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.33
Consensus pattern (26 bp):
AAAATTACCAAATACCCTTGATTTAC
Found at i:63555812 original size:27 final size:27
Alignment explanation
Indices: 63555782--63556004 Score: 284
Period size: 27 Copynumber: 8.3 Consensus size: 27
63555772 TGATTTACAA
* *
63555782 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63555809 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
63555836 AATTACCGAAATACTCCTTTAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
63555863 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63555890 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
63555917 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
63555944 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
63555971 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
63555998 AATTACC
1 AATTACC
63556005 ATTTTGCCCC
Statistics
Matches: 173, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:63556438 original size:6 final size:6
Alignment explanation
Indices: 63556407--63556494 Score: 81
Period size: 6 Copynumber: 14.3 Consensus size: 6
63556397 TTGCATTCCC
* *
63556407 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63556456 -TCACCTG ATTCTG ATTCTA ATTCTG ATTCTA ATTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
63556495 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:63556445 original size:31 final size:31
Alignment explanation
Indices: 63556407--63556485 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
63556397 TTGCATTCCC
* *
63556407 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
63556438 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
63556469 ATTCTAATTCTGATTCT
1 ATTCTGATTCTGATTCT
63556486 AATTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:63556503 original size:18 final size:17
Alignment explanation
Indices: 63556482--63556515 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63556472 CTAATTCTGA
63556482 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
63556500 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
63556516 GGTTAAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:63557431 original size:27 final size:27
Alignment explanation
Indices: 63557401--63557596 Score: 241
Period size: 27 Copynumber: 7.3 Consensus size: 27
63557391 GGGGCAAAAT
* * * *
63557401 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63557428 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
63557455 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63557482 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63557509 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
63557536 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
63557563 AGTAATTCTACCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
63557590 GGTAATT
1 GGTAATT
63557597 TTGTAAACCA
Statistics
Matches: 148, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 146 0.99
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:63557460 original size:54 final size:54
Alignment explanation
Indices: 63557402--63557593 Score: 278
Period size: 54 Copynumber: 3.6 Consensus size: 54
63557392 GGGCAAAATG
* * ** * *
63557402 GTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
*
63557456 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
**
63557509 GATAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
*
63557564 GTAATTCTACCCTACAGGAGTATTTCGGTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTA
63557594 ATTTTGTAAA
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.98
55 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCA
Found at i:63557517 original size:81 final size:81
Alignment explanation
Indices: 63557405--63557596 Score: 289
Period size: 81 Copynumber: 2.4 Consensus size: 81
63557395 CAAAATGGTA
* * *
63557405 ATTT-TACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
*
63557469 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* * *
63557485 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
63557550 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
*
63557566 AATTCTACCCTAC-AGGAGTATTTCGGTAATT
1 ATTTCTACCCTACAAGG-GTATTTCGGTAATT
63557597 TTGTAAACCA
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
80 7 0.07
81 94 0.93
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:63557612 original size:54 final size:52
Alignment explanation
Indices: 63557402--63557623 Score: 216
Period size: 54 Copynumber: 4.1 Consensus size: 52
63557392 GGGCAAAATG
* * ** * *
63557402 GTAATTTTACCCCACAAAGGTATCTCGGTAATTCT-ACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCC-A-A-GGGTATTTCA
*
63557456 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACC--CAAGGGTATTTCA
**
63557509 GATAATTCTACCCTACAGGGGTATTTTAGTATTTCT-ACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCC-A-A-GGGTATTTCA
* * *
63557564 GTAATTCTACCCTACAGGAGTATTTCGGTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGT-A-TTTCTAACCCAAGGGTATTTCA
63557618 GTAATT
1 GTAATT
63557624 TTGTAAATCG
Statistics
Matches: 142, Mismatches: 15, Indels: 22
0.79 0.08 0.12
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 4 0.03
54 120 0.85
55 6 0.04
56 6 0.04
57 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (52 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAACCCAAGGGTATTTCA
Found at i:63557613 original size:27 final size:27
Alignment explanation
Indices: 63557583--63557921 Score: 191
Period size: 27 Copynumber: 12.6 Consensus size: 27
63557573 CCCTACAGGA
* * * *
63557583 GTATTTCGGTAATTTTGTAAACCAAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
*
63557610 GTATTTCAGTAATTTTGTAAATCGAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
*** * * * *
63557637 GTAAAACGGTAATTCTATAAATCAATG
1 GTATTTCAGTAATTTTATAAATCGAGG
** *
63557664 GTAAAAT-AGTAATTTTGTAAATCGAGG
1 GT-ATTTCAGTAATTTTATAAATCGAGG
*** *
63557691 GTAAAACAGTAATTCTATAAATCGAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
*** * *
63557718 GTAAAACAGTAATTCTGTAAATCGAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
* * *
63557745 GTACTTT-GGTAATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTATAAATCGAGG
* * **
63557772 ATATTTCAGTAATTTTACAGGTCGAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
* *
63557799 GTATTTCAGTAATTTCACAAATC-AGAG
1 GTATTTCAGTAATTTTATAAATCGAG-G
** * *
63557826 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTCAGTAATTTTATAAATCGA-GG
** * * *
63557853 GTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
** * * *
63557880 GTATTTTGGTGATTTTATAAACCAAGG
1 GTATTTCAGTAATTTTATAAATCGAGG
63557907 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
63557922 GGTAAACTAA
Statistics
Matches: 259, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
26 9 0.03
27 244 0.94
28 6 0.02
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (27 bp):
GTATTTCAGTAATTTTATAAATCGAGG
Found at i:63557676 original size:81 final size:81
Alignment explanation
Indices: 63557591--63557740 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 81
63557581 GAGTATTTCG
*** * * *
63557591 GTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
63557656 AATCAATGGTAAAATA
66 AATCAATGGTAAAATA
* * *
63557672 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
63557737 AATC
66 AATC
63557741 GAGGGTACTT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 60 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (81 bp):
GTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
AATCAATGGTAAAATA
Found at i:63557758 original size:54 final size:54
Alignment explanation
Indices: 63557589--63557747 Score: 219
Period size: 54 Copynumber: 2.9 Consensus size: 54
63557579 AGGAGTATTT
* * * ***
63557589 CGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAA
* *
63557643 CGGTAATTCTATAAATCAATGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAA
* * *
63557697 CAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 CGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTA
63557748 CTTTGGTAAT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (54 bp):
CGGTAATTCTATAAATCAAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAA
Found at i:63562117 original size:24 final size:26
Alignment explanation
Indices: 63562090--63562138 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
63562080 AGTTCATGCA
63562090 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
63562114 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
63562139 ACTTACCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:63567046 original size:43 final size:42
Alignment explanation
Indices: 63566890--63567047 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
63566880 ATGTGATTTT
* * *
63566890 GTGTAAGACCACATCTGGGACGTTGGCGTCGACTTATGTTTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTATG-ATTAC
* * *
63566934 GTGTAAGACCATGTCTGGGAC-TTCGGCATCG-TATCTGATTTC
1 GTGTAAGACCACGTCTGGGACGTT-GGCATCGAT-TATGATTAC
* *
63566976 GTGTAAGACC-CTGTCTGGGACAG-TGGCAACGATGTTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TATGATTAC
*
63567019 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
63567048 TGTATATGTT
Statistics
Matches: 93, Mismatches: 13, Indels: 17
0.76 0.11 0.14
Matches are distributed among these distances:
42 30 0.32
43 37 0.40
44 26 0.28
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTATGATTAC
Found at i:63570587 original size:46 final size:46
Alignment explanation
Indices: 63570537--63570712 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
63570527 TGGTTGAGCA
63570537 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63570583 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
63570628 CATCGGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63570676 CCCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63570713 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63570695 original size:93 final size:93
Alignment explanation
Indices: 63570534--63570705 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63570524 GGATGGTTGA
* *
63570534 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63570599 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63570627 GCATCGGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63570692 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63570706 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63574563 original size:21 final size:21
Alignment explanation
Indices: 63574534--63574580 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
63574524 CAATGGAAGG
* * *
63574534 AAAAGGGAAATGGAATTTAGA
1 AAAATGGAAATCGAATGTAGA
63574555 AAAATGGAAATCGAATGTAGA
1 AAAATGGAAATCGAATGTAGA
63574576 AAAAT
1 AAAAT
63574581 ACTAATAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.02, G:0.23, T:0.19
Consensus pattern (21 bp):
AAAATGGAAATCGAATGTAGA
Found at i:63584412 original size:49 final size:46
Alignment explanation
Indices: 63584340--63584555 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 46
63584330 GTAAAATGCC
63584340 GATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCTTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACAGGC-A-CATC-TCGAGGCT
* * *
63584389 GATGCCATGTCCTAGACATGGTCTTACACTGGCACATCTCGTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACAGGCACATCTCGAGGCT
* * * * * * *
63584435 GAT-ACATGTCCCAGACAT-GTTTTATACTGGCTTACGTCCCGAGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACAGGC--ACATCTCGAGGCT
* * * ** *
63584481 GATG-CATGTCCCAAACAT-GTCTTACACTA-GCACTTGTCTCAATACC
1 GATGCCATGTCCCAGACATGGTCTTACAC-AGGCAC--ATCTCGAGGCT
63584527 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
63584556 TGGCTCTCAT
Statistics
Matches: 137, Mismatches: 22, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
44 13 0.09
45 13 0.09
46 53 0.39
47 17 0.12
48 10 0.07
49 31 0.23
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACAGGCACATCTCGAGGCT
Found at i:63584491 original size:46 final size:44
Alignment explanation
Indices: 63584340--63584602 Score: 175
Period size: 46 Copynumber: 5.6 Consensus size: 44
63584330 GTAAAATGCC
* *
63584340 GATGCCATGTCCCAGACATGGTCTTACACAGGCTATCATCTTCGAGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-A-CATC-CCGAGGCT
* * *
63584389 GATGCCATGTCCTAGACATGGTCTTACACTGGCACATCTCGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACATCCCGAGGCT
* * * * *
63584435 GATACATGTCCCAGACATGTTTTATACTGGCTTACGTCCCGAGGTT
1 GATGCATGTCCCAGACATGTCTTACACTGGC--ACATCCCGAGGCT
* * * * * ** *
63584481 GATGCATGTCCCAAACATGTCTTACACTAGCACTTGTCTCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC--ATCCCGAGGCT
* *** * *
63584527 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGG--CACATCCCGAGGCT
63584575 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
63584603 AGCTCACACA
Statistics
Matches: 173, Mismatches: 33, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
44 13 0.08
45 13 0.08
46 64 0.37
47 31 0.18
48 19 0.11
49 31 0.18
50 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACATCCCGAGGCT
Found at i:63591165 original size:30 final size:31
Alignment explanation
Indices: 63591089--63591171 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
63591079 TCAGTCTCGA
*
63591089 CATAT-ACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
63591119 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
63591150 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
63591172 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:63591405 original size:24 final size:24
Alignment explanation
Indices: 63591378--63591461 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
63591368 CTAGAGGCCT
*
63591378 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
*
63591402 AGCCCTTTTTGATAAACTAGGGCAA
1 AGCCC-TTTTAATAAACTAGGGCAA
**
63591427 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTT-AATAAACTAGGGCA-A
63591453 A-CCCTTTTA
1 AGCCCTTTTA
63591462 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 35 0.67
26 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:63591425 original size:25 final size:25
Alignment explanation
Indices: 63591391--63591460 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
63591381 CTCTTTTAAT
* *
63591391 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTAGGGCAAAGCCCTTTTCGATA
*
63591416 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAGGGCAAAGCCCTTTTCGATA
63591441 AACTAGGGCATAA-CCCTTTT
1 AACTAGGGCA-AAGCCCTTTT
63591461 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AACTAGGGCAAAGCCCTTTTCGATA
Found at i:63591941 original size:20 final size:20
Alignment explanation
Indices: 63591916--63591964 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
63591906 TGGGCCTGAA
*
63591916 AGCCCATTGGGCTCGACTCT
1 AGCCCATTGGGCTCGACTCC
*
63591936 AGCCCATTGGGCTCGATTCC
1 AGCCCATTGGGCTCGACTCC
63591956 AGCCCATTG
1 AGCCCATTG
63591965 AGGCCCAACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.35, G:0.24, T:0.24
Consensus pattern (20 bp):
AGCCCATTGGGCTCGACTCC
Found at i:63592388 original size:27 final size:27
Alignment explanation
Indices: 63592358--63592511 Score: 166
Period size: 27 Copynumber: 5.7 Consensus size: 27
63592348 TTTCATCCTA
* * *
63592358 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** ** *
63592385 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
63592412 CAGGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
63592439 C-AGTGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* *
63592466 TATGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
63592493 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
63592512 CTATCCTACA
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:63592524 original size:27 final size:26
Alignment explanation
Indices: 63592361--63592544 Score: 161
Period size: 27 Copynumber: 6.8 Consensus size: 26
63592351 CATCCTACAA
* * * *
63592361 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAG
** **
63592388 GGGTATTTCAGTAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAA-CAG
*
63592415 GGGTATTTTGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAA-CAG
* *
63592442 TGGTATTTTGGTAATTTTACAAACTAT
1 GGGTATTTTGGTAATTTTACAAAC-AG
63592469 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
* **
63592496 GGGTATTTTGGTAATTCTATCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAG
** *
63592523 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
63592545 TCGAGGGTAA
Statistics
Matches: 126, Mismatches: 29, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.02
27 121 0.96
28 3 0.02
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:63592527 original size:54 final size:54
Alignment explanation
Indices: 63592332--63592544 Score: 189
Period size: 54 Copynumber: 3.9 Consensus size: 54
63592322 TTTACCTATT
* * ** * * *
63592332 AGGGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAA-ATCTACAAACC
1 AGGGGTATTTTAGTAATTTTATCAAACAGGGGTATTTTGGTAATTTC-ACAAACC
* * *
63592386 AAGGGTATTTCAGTAATTTTGT-AAATCAGGGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTAGTAATTTTATCAAA-CAGGGGTATTTTGGTAATTTCACAAACC
* * * * *
63592440 AGTGGTATTTTGGTAATTTTA-CAAACTATGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTAGTAATTTTATCAAAC-AGGGGTATTTTGGTAATTTCACAAACC
* * ** **
63592494 AGGGGTATTTTGGTAATTCTATCCTACAGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTAGTAATTTTATCAAACAGGGGTATTTTGGTAATTTCACAA
63592545 TCGAGGGTAA
Statistics
Matches: 128, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
53 2 0.02
54 121 0.95
55 5 0.04
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTAGTAATTTTATCAAACAGGGGTATTTTGGTAATTTCACAAACC
Found at i:63592537 original size:81 final size:80
Alignment explanation
Indices: 63592331--63592544 Score: 216
Period size: 81 Copynumber: 2.6 Consensus size: 80
63592321 TTTTACCTAT
* * * * * *
63592331 TAGGGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTT
1 TAGGGGTATTTTGGTAATTTCATCCTACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
**
63592396 CAGTAATTTTGTAAA
66 CAGTAATTTTACAAA
** * * *
63592411 TCAGGGGTATTTTGGTAATTTCA-CAAACCAGTGGTATTTTGGTAATTTTACAAACTATGGGTAT
1 T-AGGGGTATTTTGGTAATTTCATCCTA-CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTAT
**
63592475 TTTGGTAATTTTACAAA
64 TTCAGTAATTTTACAAA
** *
63592492 CTAGGGGTATTTTGGTAA-TTCTATCCTACAGGGGTATTTCAGTAATTTCACAA
1 -TAGGGGTATTTTGGTAATTTC-ATCCTACAGGGGTATTTTGGTAATTTTACAA
63592545 TCGAGGGTAA
Statistics
Matches: 108, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
80 6 0.06
81 99 0.92
82 3 0.03
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (80 bp):
TAGGGGTATTTTGGTAATTTCATCCTACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
CAGTAATTTTACAAA
Found at i:63592551 original size:27 final size:26
Alignment explanation
Indices: 63592332--63592544 Score: 142
Period size: 27 Copynumber: 7.9 Consensus size: 26
63592322 TTTACCTATT
* * **
63592332 AGGGGTATTTTAGTCATTTCATCCTAC
1 AGGGGTATTTTGGTAATTTCA-CAAAC
* * *
63592359 AAGGGTGTTTTGGTAA-ATCTACAAACC
1 AGGGGTATTTTGGTAATTTC-ACAAA-C
* ** ***
63592386 AAGGGTATTTCAGTAATTTTGTAAATC
1 AGGGGTATTTTGGTAATTTCACAAA-C
63592413 AGGGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTCACAAA-C
* *
63592440 AGTGGTATTTTGGTAATTTTACAAAC
1 AGGGGTATTTTGGTAATTTCACAAAC
* *
63592466 TATGGGTATTTTGGTAATTTTACAAAC
1 -AGGGGTATTTTGGTAATTTCACAAAC
**
63592493 TAGGGGTATTTTGGTAA-TTCTATCCTAC
1 -AGGGGTATTTTGGTAATTTC-A-CAAAC
**
63592521 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTCACAA
63592545 TCGAGGGTAA
Statistics
Matches: 145, Mismatches: 34, Indels: 15
0.75 0.18 0.08
Matches are distributed among these distances:
26 8 0.06
27 130 0.90
28 7 0.05
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (26 bp):
AGGGGTATTTTGGTAATTTCACAAAC
Found at i:63592577 original size:27 final size:27
Alignment explanation
Indices: 63592543--63592688 Score: 206
Period size: 27 Copynumber: 5.4 Consensus size: 27
63592533 GTAATTTCAC
63592543 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
63592570 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
*
63592597 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
63592624 AA-CTAAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
63592651 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
63592678 AATCGGGGGTA
1 AATCGAGGGTA
63592689 CTTTGATAAT
Statistics
Matches: 104, Mismatches: 11, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
26 2 0.02
27 100 0.96
28 2 0.02
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:63592688 original size:54 final size:54
Alignment explanation
Indices: 63592543--63592679 Score: 247
Period size: 54 Copynumber: 2.5 Consensus size: 54
63592533 GTAATTTCAC
*
63592543 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
* *
63592597 AATCGAGGGTAAAACGATAATTTTGTAAACTAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
63592651 AATCGAGGGTAAAACGGTAATTTTGTAAA
1 AATCGAGGGTAAAACGGTAATTTTGTAAA
63592680 TCGGGGGTAC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
Found at i:63592698 original size:27 final size:27
Alignment explanation
Indices: 63592667--63592841 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
63592657 GGGTAAAACG
* * *
63592667 GTAATTTTGTAAATCGGGGGTACTTTGA
1 GTAATTTTATAAATCGAGGGTA-TTTCA
* *
63592695 -TAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTTCA
* *
63592721 GTAATTTTA-CAATCGACGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTTCA
*
63592747 GTAATTTTATAAATC-AGGGGTACTTT-G
1 GTAATTTTATAAATCGA-GGGTA-TTTCA
* * *
63592774 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTTCA
* *
63592801 ATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTATAAATCGAGGGTATTTCA
63592828 GTAATTTTAGTAAA
1 GTAATTTTA-TAAA
63592842 CTAAAGTATT
Statistics
Matches: 120, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
26 31 0.26
27 82 0.68
28 7 0.06
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTATTTCA
Found at i:63592711 original size:54 final size:53
Alignment explanation
Indices: 63592533--63592715 Score: 219
Period size: 54 Copynumber: 3.4 Consensus size: 53
63592523 GGGTATTTCA
*
63592533 GTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
* *
63592586 GTAATTTTGTA-AATCGAGGGTAAAACGATAATTTTGTAAACTAAGGGTAAAATG
1 GTAA-TTT-TACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
* ***
63592640 GTAATTCTGTA-AATCGAGGGTAAAACGGTAATTTTGTAAA-TCGGGGGTACTTTG
1 GTAATT-T-TACAATCGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAATG
*
63592694 ATAATTTTACAAGTCGAGGGTA
1 GTAATTTTACAA-TCGAGGGTA
63592716 TTTCAGTAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
52 2 0.02
53 10 0.09
54 101 0.89
55 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
Found at i:63592714 original size:81 final size:80
Alignment explanation
Indices: 63592534--63592795 Score: 221
Period size: 81 Copynumber: 3.3 Consensus size: 80
63592524 GGTATTTCAG
* * *
63592534 TAATTTCACAA-TCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 TAATTTTACAAGTCGAGGGTAAAATGGTAA-TTTGTAAATC-GAGGGTAAAACGGTAATTTTGTA
* ****
63592597 AATCGAGGGTAAAACGA
64 AATCGGGGGTACTTTGA
* *
63592614 TAATTTTGTA-AACT-AAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 TAA-TTT-TACAAGTCGAGGGTAAAATGGTAATT-TGTAAATCGAGGGTAAAACGGTAATTTTGT
63592677 AAATCGGGGGTACTTTGA
63 AAATCGGGGGTACTTTGA
** * * *** * *
63592695 TAATTTTACAAGTCGAGGGT-ATTTCAGTAATTT-TACAATCGACGGTATTTCAGTAATTTTATA
1 TAATTTTACAAGTCGAGGGTAAAAT-GGTAATTTGTA-AATCGAGGGTAAAACGGTAATTTTGTA
* *
63592758 AATCAGGGGTACTTTGG
64 AATCGGGGGTACTTTGA
*
63592775 TAATTTTACAAGTCGAAGGTA
1 TAATTTTACAAGTCGAGGGTA
63592796 TTTCAATAAT
Statistics
Matches: 149, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
79 4 0.03
80 69 0.46
81 73 0.49
82 3 0.02
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.34
Consensus pattern (80 bp):
TAATTTTACAAGTCGAGGGTAAAATGGTAATTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAA
TCGGGGGTACTTTGA
Found at i:63592768 original size:80 final size:81
Alignment explanation
Indices: 63592667--63592841 Score: 280
Period size: 80 Copynumber: 2.2 Consensus size: 81
63592657 GGGTAAAACG
* * * *
63592667 GTAATTTTGTAAATCGGGGGTACTTTGATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTAC-
1 GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
63592731 AATCGACGGTATTTCA
66 AATCGACGGTATTTCA
*
63592747 GTAATTTTATAAATCAGGGGTACTTTGGTAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
1 GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
*
63592812 AATCGAGGGTATTTCA
66 AATCGACGGTATTTCA
63592828 GTAATTTTAGTAAA
1 GTAATTTTA-TAAA
63592842 CTAAAGTATT
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
80 59 0.68
81 24 0.28
82 4 0.05
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
GTAATTTTATAAATCAGGGGTACTTTGATAATTTTACAAGTCGAAGGTATTTCAATAATTTTACA
AATCGACGGTATTTCA
Found at i:63592851 original size:54 final size:53
Alignment explanation
Indices: 63592694--63592836 Score: 200
Period size: 54 Copynumber: 2.7 Consensus size: 53
63592684 GGGTACTTTG
* *
63592694 ATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTACAATCGACGGTATTTCA
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGGTATTTCA
* * *
63592747 GTAATTTTATAAATC-AGGGGTACTTT-GGTAATTTTACAAGTCGAAGGTATTTCA
1 ATAATTTTACAAATCGA-GGGTA-TTTCAGTAATTTTACAA-TCGAAGGTATTTCA
63592801 ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
1 ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTA
63592837 GTAAACTAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 32 0.42
54 43 0.56
55 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.39
Consensus pattern (53 bp):
ATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCGAAGGTATTTCA
Found at i:63595057 original size:49 final size:46
Alignment explanation
Indices: 63594995--63595309 Score: 216
Period size: 49 Copynumber: 6.7 Consensus size: 46
63594985 TGGGTAAAAT
*
63594995 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAG
1 GCTGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCATC-TCGAG
* * *
63595044 GCTGATGCTATGTCCTAGACATGGTCTTACACT-GCTCTCA-CATAGCCG
1 GCTGATGC-ATGTCCCAGACATGGTCTTACACTGGCT-TCATC-TCG-AG
* * *
63595092 TG-TCGATGTCATGTCCTAGACATGGTCTTACACTGGC-ACATCTCGTG
1 -GCT-GATG-CATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAG
* * * * *
63595139 GCTGATACATGTCCCAGACAT-GTTTTATACTGGCTTACGTCCCGAG
1 GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGAG
* * * * * *
63595185 GTTGATGCATGTCCCAAACAT-GTCTTACACTAGCACTT-GTCTCAAT
1 GCTGATGCATGTCCCAGACATGGTCTTACACT-G-GCTTCATCTCGAG
* * * *
63595231 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCTGATG-CATGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTCGAG
*
63595279 GCCGATGCATGTCCCAGACAT-GTCTTACACT
1 GCTGATGCATGTCCCAGACATGGTCTTACACT
63595310 AGCTCACACA
Statistics
Matches: 212, Mismatches: 37, Indels: 37
0.74 0.13 0.13
Matches are distributed among these distances:
44 11 0.05
45 13 0.06
46 57 0.27
47 35 0.17
48 32 0.15
49 61 0.29
50 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAG
Found at i:63601761 original size:22 final size:23
Alignment explanation
Indices: 63601721--63601766 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
63601711 GACCCAACTA
63601721 ATGTGGCCCACACGACCT-ACAC
1 ATGTGGCCCACACGACCTAACAC
* * *
63601743 ATGTGGTCCACATGGCCTAACAC
1 ATGTGGCCCACACGACCTAACAC
63601766 A
1 A
63601767 CGACCTACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (23 bp):
ATGTGGCCCACACGACCTAACAC
Found at i:63602624 original size:80 final size:80
Alignment explanation
Indices: 63602539--63602696 Score: 307
Period size: 80 Copynumber: 2.0 Consensus size: 80
63602529 TTATCAGATT
*
63602539 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATGGGTGGCATTAACTAGAAATAATAAAAA
1 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
63602604 TAATTTCATTGTGTG
66 TAATTTCATTGTGTG
63602619 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
1 TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
63602684 TAATTTCATTGTG
66 TAATTTCATTGTG
63602697 CACACACTGG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (80 bp):
TTTTTTCCCCTTGAATTCCACTCAACTTCCTCCATATAGGTGGCATTAACTAGAAATAATAAAAA
TAATTTCATTGTGTG
Found at i:63604676 original size:3 final size:3
Alignment explanation
Indices: 63604668--63604737 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
63604658 CTTTACTCTC
63604668 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
63604716 TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT T
63604738 TTTTGTGCAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:63614087 original size:14 final size:15
Alignment explanation
Indices: 63614068--63614097 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
63614058 AATCTAAAAA
63614068 TTAAAAAAT-ATTTT
1 TTAAAAAATCATTTT
63614082 TTAAAAAATCATTTT
1 TTAAAAAATCATTTT
63614097 T
1 T
63614098 AGTCCTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAAAAAATCATTTT
Found at i:63631841 original size:26 final size:26
Alignment explanation
Indices: 63631811--63631861 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
63631801 AGATTTATTA
* *
63631811 CAAGTTGGGTTTACCAGTTGGTTTGG
1 CAAGTAGGGTTCACCAGTTGGTTTGG
63631837 CAAGTAGGGTTCACCAGTTGGTTTG
1 CAAGTAGGGTTCACCAGTTGGTTTG
63631862 TCGAACTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.14, G:0.33, T:0.35
Consensus pattern (26 bp):
CAAGTAGGGTTCACCAGTTGGTTTGG
Found at i:63632529 original size:13 final size:13
Alignment explanation
Indices: 63632497--63632542 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
63632487 ATTTTAAAAC
* *
63632497 ATGTTTCCAAGTT
1 ATGTTTTCAAGAT
*
63632510 ATGTTTTCAAGCT
1 ATGTTTTCAAGAT
*
63632523 ATGTTTTAAAGAT
1 ATGTTTTCAAGAT
63632536 ATGTTTT
1 ATGTTTT
63632543 ATCCATGCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (13 bp):
ATGTTTTCAAGAT
Found at i:63632920 original size:14 final size:13
Alignment explanation
Indices: 63632892--63632916 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63632882 TATGCAAGCC
63632892 TATGTTTTTAAAG
1 TATGTTTTTAAAG
63632905 TATGTTTTTAAA
1 TATGTTTTTAAA
63632917 AGTACAGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TATGTTTTTAAAG
Found at i:63638095 original size:46 final size:45
Alignment explanation
Indices: 63638028--63638153 Score: 189
Period size: 46 Copynumber: 2.8 Consensus size: 45
63638018 CTAGGCATTT
*
63638028 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA-CC
* *
63638074 GAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACACC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACC
* *
63638119 CAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63638154 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
45 4 0.05
46 69 0.95
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACC
Found at i:63639818 original size:20 final size:22
Alignment explanation
Indices: 63639781--63639828 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
63639771 AAATAGTGAG
*
63639781 AATT-TATGTTCTAAGAAT-A-
1 AATTCTATTTTCTAAGAATTAC
*
63639800 AATTCTATTTTCTAGGAATTAC
1 AATTCTATTTTCTAAGAATTAC
63639822 AATTCTA
1 AATTCTA
63639829 CTAATTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 1 0.04
22 7 0.29
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (22 bp):
AATTCTATTTTCTAAGAATTAC
Found at i:63640626 original size:23 final size:23
Alignment explanation
Indices: 63640596--63640641 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
63640586 AATAGATTAC
63640596 GGGTCCTCGTGCTATGAAGTGAT
1 GGGTCCTCGTGCTATGAAGTGAT
*
63640619 GGGTCCTCTTGCTATGAAGTGAT
1 GGGTCCTCGTGCTATGAAGTGAT
63640642 CATACTGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (23 bp):
GGGTCCTCGTGCTATGAAGTGAT
Done.