Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 199 of 290
Found at i:63653270 original size:37 final size:37
Alignment explanation
Indices: 63653220--63653298 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63653210 TTATTACGAA
* *
63653220 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
63653257 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
63653294 GTCTT
1 GTCTT
63653299 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:63653495 original size:47 final size:47
Alignment explanation
Indices: 63653417--63654046 Score: 1080
Period size: 47 Copynumber: 13.4 Consensus size: 47
63653407 CCCTTCGGGA
* * * * * * * *
63653417 CTTATCACATTTTTGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63653464 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63653511 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63653558 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63653605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63653652 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63653699 CTTATCACATATATACACTTCCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63653746 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63653793 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63653840 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63653887 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63653934 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63653981 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63654028 CTTATCACATATATACACT
1 CTTATCACATATATACACT
63654047 GTCTTGGCTG
Statistics
Matches: 555, Mismatches: 28, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 555 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63656650 original size:56 final size:55
Alignment explanation
Indices: 63656565--63656672 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 55
63656555 TTATAGCTTG
* *
63656565 CAAATTAGTTATTCATGAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
1 CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
*
63656620 CAAATTTAATTATTCATAAGTACTATTCAAATTAAAAGTGATGATTTATCATC
1 CAAA-TTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATC
63656673 CAATGGACAC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 4 0.08
56 45 0.92
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
Found at i:63662777 original size:28 final size:28
Alignment explanation
Indices: 63662690--63662777 Score: 65
Period size: 28 Copynumber: 3.1 Consensus size: 28
63662680 ATTGCAAATT
*
63662690 AATTATTCATGAGCACTATTCAAATTAA
1 AATTATTCATAAGCACTATTCAAATTAA
* * ** * *
63662718 AAGTGA-TGATTTGTCA-TATTACAAGTT-T
1 AA-TTATTCATAAG-CACTATT-CAAATTAA
63662746 AATTATTCATAAGCACTATTCAAATTAA
1 AATTATTCATAAGCACTATTCAAATTAA
63662774 AATT
1 AATT
63662778 GATGATTTAT
Statistics
Matches: 42, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
27 9 0.21
28 24 0.57
29 9 0.21
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (28 bp):
AATTATTCATAAGCACTATTCAAATTAA
Found at i:63662940 original size:26 final size:26
Alignment explanation
Indices: 63662911--63662960 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
63662901 TGGTGCTCAT
*
63662911 AAAATGTACAATTACAATCAATCTAC
1 AAAATATACAATTACAATCAATCTAC
63662937 AAAATATACAATTACAATCAATCT
1 AAAATATACAATTACAATCAATCT
63662961 TATTTTCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.28
Consensus pattern (26 bp):
AAAATATACAATTACAATCAATCTAC
Found at i:63668065 original size:46 final size:45
Alignment explanation
Indices: 63668012--63668186 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
63668002 ATTTGGGCAT
63668012 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAG-GC
* * *
63668058 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAGGC
* *
63668103 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AGGC
* * * *
63668151 CCGAGCACATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63668187 GCAGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 64 0.59
47 28 0.26
48 5 0.05
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGGC
Found at i:63668166 original size:93 final size:93
Alignment explanation
Indices: 63668007--63668179 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
63667997 GGGATATTTG
* * *
63668007 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACATTGAG
63668072 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
63668100 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCACATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACATTGAG
63668165 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
63668180 CTTATGGGCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63669542 original size:48 final size:48
Alignment explanation
Indices: 63669487--63669701 Score: 215
Period size: 48 Copynumber: 4.5 Consensus size: 48
63669477 GGTGTGTTAC
* * *
63669487 AGACCATGTCTAGGACATGGCACCGGTCTCGATATGTGACCTGGTGTA
1 AGACCATGTCTAGGACATGGCATCGGTCTCGATATGTGAGCTAGTGTA
* * * *
63669535 AGACCATGT-TTGGAACATGGCATCGGTATTGATATGAGAGCTAGTGTA
1 AGACCATGTCTAGG-ACATGGCATCGGTCTCGATATGTGAGCTAGTGTA
* * *
63669583 AGACCATGTCTAGGACACGGCATCAGCCTCGATATGTGAGCTAGTGTA
1 AGACCATGTCTAGGACATGGCATCGGTCTCGATATGTGAGCTAGTGTA
* * ** * *
63669631 AGACCATGT-TTGGAACATGACATTAG-CAT-GATATGAGAGCCAGTGTA
1 AGACCATGTCTAGG-ACATGGCATCGGTC-TCGATATGTGAGCTAGTGTA
*
63669678 AGACCAT-TCTAAGACATGGCATCG
1 AGACCATGTCTAGGACATGGCATCG
63669702 ATATCTTACC
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
46 9 0.07
47 32 0.23
48 93 0.68
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
AGACCATGTCTAGGACATGGCATCGGTCTCGATATGTGAGCTAGTGTA
Found at i:63674099 original size:40 final size:41
Alignment explanation
Indices: 63673909--63674111 Score: 284
Period size: 41 Copynumber: 5.0 Consensus size: 41
63673899 TTTTAAAATA
*
63673909 CAGAGCAATAGCGGCGTTTTTGGTAAAAACGCCGCTAAAAA-
1 CAGAGCAATAGCGGCGCTTTTGGT-AAAACGCCGCTAAAAAC
* * **
63673950 CAGAGCAACAGCGGCGTTTTTTACTAAAACGCCGCTAAAAAC
1 CAGAGCAATAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAAC
* *
63673992 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGTTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
*
63674033 CAGAGCACTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* *
63674074 CA-AGCATTAGCGGCGCTTTTAGTAAAACGCCGCTAAAA
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
63674112 GTCATATAAC
Statistics
Matches: 147, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 34 0.23
41 93 0.63
42 20 0.14
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
Found at i:63674292 original size:14 final size:14
Alignment explanation
Indices: 63674273--63674312 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
63674263 TATCATTACA
63674273 GTTTAAGGTTTATG
1 GTTTAAGGTTTATG
* *
63674287 GTTTAAGATATATG
1 GTTTAAGGTTTATG
*
63674301 GTTTAGGGTTTA
1 GTTTAAGGTTTA
63674313 AGCAGGTTTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (14 bp):
GTTTAAGGTTTATG
Found at i:63674303 original size:21 final size:21
Alignment explanation
Indices: 63674279--63674363 Score: 71
Period size: 21 Copynumber: 3.7 Consensus size: 21
63674269 TACAGTTTAA
*
63674279 GGTTTATGGTTTAAGATATAT
1 GGTTTAGGGTTTAAGATATAT
*
63674300 GGTTTAGGGTTTAAGCAGGTTTAT
1 GGTTTAGGGTTTAAG-A--TATAT
* *
63674324 GAGTTAACTATGGTTTAAGATATAC
1 G-GTT---TAGGGTTTAAGATATAT
63674349 GGTTTAGGGTTTAAG
1 GGTTTAGGGTTTAAG
63674364 GTTTAAGAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
21 24 0.47
22 1 0.02
24 8 0.16
25 7 0.14
27 1 0.02
28 10 0.20
ACGTcount: A:0.27, C:0.04, G:0.28, T:0.41
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGATATAT
Found at i:63674341 original size:49 final size:46
Alignment explanation
Indices: 63674283--63674379 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 46
63674273 GTTTAAGGTT
* *
63674283 TATGGTTTAAGATATATGGTTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATACGGTTTAGGGTTT-A--AGGTTTAAGAGTTAAC
63674332 TATGGTTTAAGATATACGGTTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATACGGTTTAGGGTTTAAGGTTTAAGAGTTAAC
63674378 TA
1 TA
63674380 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
46 17 0.37
48 1 0.02
49 28 0.61
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.40
Consensus pattern (46 bp):
TATGGTTTAAGATATACGGTTTAGGGTTTAAGGTTTAAGAGTTAAC
Found at i:63674943 original size:14 final size:14
Alignment explanation
Indices: 63674924--63674968 Score: 81
Period size: 14 Copynumber: 3.2 Consensus size: 14
63674914 TTAATTATCA
63674924 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
63674938 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
63674952 GTATAGTTTAGGGT
1 TTATAGTTTAGGGT
63674966 TTA
1 TTA
63674969 ATTTTTAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:63675268 original size:32 final size:34
Alignment explanation
Indices: 63675232--63675301 Score: 83
Period size: 32 Copynumber: 2.1 Consensus size: 34
63675222 TTAAAAAGTT
*
63675232 TAATATTCAAAATAAAAAAATTTT-AAA-AAAAA
1 TAATAATCAAAATAAAAAAATTTTGAAAGAAAAA
** *
63675264 TAATAATCTCAATATAAAAATTTTGAAAGAAAAA
1 TAATAATCAAAATAAAAAAATTTTGAAAGAAAAA
63675298 -AATA
1 TAATA
63675302 GAAAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 20 0.62
33 7 0.22
34 5 0.16
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (34 bp):
TAATAATCAAAATAAAAAAATTTTGAAAGAAAAA
Found at i:63679431 original size:19 final size:19
Alignment explanation
Indices: 63679408--63679454 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
63679398 ATTTAATCTA
*
63679408 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
63679426 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
63679446 ATTTTTATT
1 ATTTTTATT
63679455 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:63681973 original size:32 final size:32
Alignment explanation
Indices: 63681932--63681997 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
63681922 CATACATGTT
*
63681932 TAATTAGTTCAGATATTTCAAGCTCTTTGAAC
1 TAATTAGTTCAGATATTTCAAGCACTTTGAAC
*
63681964 TAATTAGTTCAGATATTTCAAGCAGTTTGAAC
1 TAATTAGTTCAGATATTTCAAGCACTTTGAAC
63681996 TA
1 TA
63681998 TTGGAAGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (32 bp):
TAATTAGTTCAGATATTTCAAGCACTTTGAAC
Found at i:63685055 original size:54 final size:53
Alignment explanation
Indices: 63684971--63685161 Score: 158
Period size: 53 Copynumber: 3.6 Consensus size: 53
63684961 AAATTCGAAA
* * *
63684971 AAAAAAAGTTTTTGGGTTTGAGCAAAGTAAAAGTTTTGAGGGAAAA-CAAAAG
1 AAAAAAAGTTTTGGGGTTTGAGCGAAGTAAAAGTTTTGAGGGAAAAGAAAAAG
* * *
63685023 AAAAAAAGTTTTAGGGGTTTGGGAG-GAAGTAAAAATTTTG-TGGAAAAGTAAAAG
1 AAAAAAAGTTTT-GGGGTTT--GAGCGAAGTAAAAGTTTTGAGGGAAAAGAAAAAG
* * * * ** *
63685077 GAAAAAGGTTTTGAGGGTTTAAGTGAAGTGGAAGTTTTGAGAGGAAAATAAAAAGG
1 AAAAAAAGTTTTG-GGGTTTGAGCGAAGTAAAAGTTTTGAG-GGAAAAGAAAAA-G
* *
63685133 AAAAAAA--TTTGGGGTTTGGGAGAAGTAAA
1 AAAAAAAGTTTTGGGGTTTGAGCGAAGTAAA
63685162 TTTTTTTGGG
Statistics
Matches: 109, Mismatches: 21, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
52 14 0.13
53 38 0.35
54 38 0.35
55 13 0.12
56 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.30, T:0.25
Consensus pattern (53 bp):
AAAAAAAGTTTTGGGGTTTGAGCGAAGTAAAAGTTTTGAGGGAAAAGAAAAAG
Found at i:63685068 original size:53 final size:54
Alignment explanation
Indices: 63684971--63685093 Score: 128
Period size: 54 Copynumber: 2.3 Consensus size: 54
63684961 AAATTCGAAA
* *
63684971 AAAAAAAGTTTT-TGGGTTTGAGCAAAGTAAAAGTTTTGAGGGAAAA-CAAAAG
1 AAAAAAAGTTTTAGGGGTTTGAGCAAAGTAAAAATTTTGAGGGAAAAGCAAAAG
* * *
63685023 AAAAAAAGTTTTAGGGGTTTGGGAG-GAAGTAAAAATTTTG-TGGAAAAGTAAAAG
1 AAAAAAAGTTTTAGGGGTTT--GAGCAAAGTAAAAATTTTGAGGGAAAAGCAAAAG
* *
63685077 GAAAAAGGTTTTGAGGG
1 AAAAAAAGTTTT-AGGG
63685094 TTTAAGTGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
52 12 0.20
53 12 0.20
54 28 0.47
55 7 0.12
ACGTcount: A:0.44, C:0.02, G:0.29, T:0.25
Consensus pattern (54 bp):
AAAAAAAGTTTTAGGGGTTTGAGCAAAGTAAAAATTTTGAGGGAAAAGCAAAAG
Found at i:63685230 original size:9 final size:9
Alignment explanation
Indices: 63685207--63685243 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
63685197 AAAAGTTTGA
*
63685207 TATTTGATT
1 TATTTGAAT
*
63685216 TGTTTGAAT
1 TATTTGAAT
63685225 TATTTGAAT
1 TATTTGAAT
63685234 TATTTGAAT
1 TATTTGAAT
63685243 T
1 T
63685244 CGAAAATTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (9 bp):
TATTTGAAT
Found at i:63686839 original size:7 final size:6
Alignment explanation
Indices: 63686818--63686849 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
63686808 CGAAAATACC
*
63686818 AAAAGA AAAGGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AA
63686850 GCTATATTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:63687345 original size:15 final size:15
Alignment explanation
Indices: 63687325--63687354 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63687315 TGAATTTATG
63687325 TTTGAATAAGTTTAA
1 TTTGAATAAGTTTAA
*
63687340 TTTGAATATGTTTAA
1 TTTGAATAAGTTTAA
63687355 ATCAAAAACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
TTTGAATAAGTTTAA
Found at i:63688160 original size:43 final size:43
Alignment explanation
Indices: 63688099--63688357 Score: 362
Period size: 43 Copynumber: 6.0 Consensus size: 43
63688089 TATATGTGAT
*
63688099 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* *
63688142 ATCGATATGTAATTATGTGTAAAACCAAGTCTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* *
63688185 ATCGATATGTAATTATGTGTAAGACCACGTCTAGGACGTTTGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* *
63688228 ATCGATATGTAATTATGTTTAAGACCA-GTTTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* * *
63688270 ATCGATATGTGATTACGTGTAAGA-CATTGTCTGGGACAG-TGGC
1 ATCGATATGTAATTATGTGTAAGACCA-CGTCTGGGAC-GTTGGC
* **
63688313 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
63688356 AT
1 AT
63688358 TGTACGATAT
Statistics
Matches: 194, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
41 2 0.01
42 34 0.18
43 155 0.80
44 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
Found at i:63688334 original size:128 final size:129
Alignment explanation
Indices: 63688099--63688357 Score: 371
Period size: 128 Copynumber: 2.0 Consensus size: 129
63688089 TATATGTGAT
*
63688099 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTATGTGTAA
1 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTACGTGTAA
** *
63688164 AACCAAGTCTGGGACGTTGGCATCGATATGTAATTATGTGTAAGACCACGTCTAGGACGTTTGC
66 AACCAAGTCTGGGACGTTGGCATCGATATGTAATTACATGTAAGACCACGTCTAGGACGTTGGC
* * * *
63688228 ATCGATATGTAATTATGTTTAAGACCA-GTTTGGGACGTTGGCATCGATATGTGATTACGTGTAA
1 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTACGTGTAA
* * * *
63688292 GA-CATTGTCTGGGACAG-TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
66 AACCA-AGTCTGGGAC-GTTGGCATCGATATGTAATTACATGTAAGACCACGTCTAGGACGTTGG
63688355 C
129 C
63688356 AT
1 AT
63688358 TGTACGATAT
Statistics
Matches: 116, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
127 2 0.02
128 87 0.75
129 27 0.23
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (129 bp):
ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTACGTGTAA
AACCAAGTCTGGGACGTTGGCATCGATATGTAATTACATGTAAGACCACGTCTAGGACGTTGGC
Found at i:63691231 original size:27 final size:27
Alignment explanation
Indices: 63691200--63691546 Score: 357
Period size: 27 Copynumber: 13.0 Consensus size: 27
63691190 TACTAGAATA
*
63691200 ACCGAAATACCCCAATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* * *
63691227 ACCGAAATACCTCTGTAGGGTAAAAAG
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
63691254 ACCAAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
63691281 ACCAAAATACCCCTGTAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
** *** **
63691308 AAAGAAATACTTTTGCAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* * *
63691335 ATCGAAATACCCCCATAGGGTAAAATA
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
63691362 ACCAAAATACCCCTGTAGGGTAAAAT-
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
63691388 AAC-AAATACCCCT-GAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* * *
63691413 ACCGAAATACCCCCATTGGATAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
*
63691440 ACCGAAATACCCCTGTAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
*
63691467 ACTGAAATA-CCCTATAGGGTAAAAT-
1 ACCGAAATACCCCTATAGGGTAAAATG
*
63691492 AACGAAAATACCCC-ATAGGGTAAAATG
1 ACCG-AAATACCCCTATAGGGTAAAATG
* *
63691519 A-CTATAATACCCCTATAAGGTAAAATG
1 ACCGA-AATACCCCTATAGGGTAAAATG
63691546 A
1 A
63691547 TTGATTTTCC
Statistics
Matches: 264, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
24 10 0.04
25 15 0.06
26 52 0.20
27 187 0.71
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
ACCGAAATACCCCTATAGGGTAAAATG
Found at i:63692028 original size:34 final size:34
Alignment explanation
Indices: 63691945--63692018 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
63691935 ACATTACTGC
* * *
63691945 ACTGATACTGTTACTGTAATGGGCTAAGACCCAC
1 ACTGATACTGATACTGTAACGGGCTAAGACCCAA
* *
63691979 ATTGATACTGATACTGTAACGGGCTTAGACCCAA
1 ACTGATACTGATACTGTAACGGGCTAAGACCCAA
63692013 ACTGAT
1 ACTGAT
63692019 CTATCTACTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (34 bp):
ACTGATACTGATACTGTAACGGGCTAAGACCCAA
Found at i:63694953 original size:161 final size:160
Alignment explanation
Indices: 63694687--63695124 Score: 555
Period size: 161 Copynumber: 2.7 Consensus size: 160
63694677 CCATGTTGGG
* * ** *
63694687 CCGAAATACCCCCATAGGGTAAAATGACCAAAATA-CCTCCATAGGGTAAAATGATCGAAATACC
1 CCGAAATACCCCTATAGGGTAAAATGATCAAAATACCCT-TGTAGAGTAAAATGATCGAAATA-C
*
63694751 CCTTTAGGGTAAAATGATCGAAATACCCCAT-AAGGTAAAATGA-TCGAAATACCCCCATAAGG-
64 CCTTTAGGGTAAAATGACCGAAATACCCC-TGAAGGTAAAATGACT-GAAATACCCCCAT-AGGA
63694813 TAAAATGACCAAAATACCCCCATAGGGTAAAATGA
126 TAAAATGACCAAAATACCCCCATAGGGTAAAATGA
* * *
63694848 TCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCTTGTAGAGTAAAATGATCGAAATACCC
1 CCGAAATACCCCTATAGGGTAAAATGATCAAAATACCCTTGTAGAGTAAAATGATCGAAATACCC
*
63694913 TTGTAGGGTAAAATGACCGAAATACCCCTGAGGGTAAAATGACTGAAATACCCCCATAGGATAAA
66 TT-TAGGGTAAAATGACCGAAATACCCCTGAAGGTAAAATGACTGAAATACCCCCATAGGATAAA
* ***
63694978 ATGACCGAAATACCCTTGTAGGGTAAAATGA
130 ATGACCAAAATACCCCCATAGGGTAAAATGA
* * * *
63695009 CCGAAATACCCCTGTAGGGTAAAATGATTAAAATACCCCTGTAAAGTAAAATGA-CTGAAATACC
1 CCGAAATACCCCTATAGGGTAAAATGATCAAAATACCCTTGTAGAGTAAAATGATC-GAAATA-C
** * *
63695073 CCCATAGGGTAAAATAACCGAAATACCCCTGTAAGGT-AAATGACTGTAATAC
64 CCTTTAGGGTAAAATGACCGAAATACCCCTG-AAGGTAAAATGACTGAAATAC
63695125 TCTTGTTGTA
Statistics
Matches: 243, Mismatches: 26, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
160 10 0.04
161 222 0.91
162 11 0.05
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (160 bp):
CCGAAATACCCCTATAGGGTAAAATGATCAAAATACCCTTGTAGAGTAAAATGATCGAAATACCC
TTTAGGGTAAAATGACCGAAATACCCCTGAAGGTAAAATGACTGAAATACCCCCATAGGATAAAA
TGACCAAAATACCCCCATAGGGTAAAATGA
Found at i:63695110 original size:27 final size:27
Alignment explanation
Indices: 63694687--63695116 Score: 481
Period size: 27 Copynumber: 16.0 Consensus size: 27
63694677 CCATGTTGGG
*
63694687 CCGAAATACCCCCATAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
*
63694714 CCAAAATACCTCC-ATAGGGTAAAATGA
1 CCGAAATACC-CCTATAGGGTAAAATGA
* *
63694741 TCGAAATACCCCTTTAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* *
63694768 TCGAAATACCCC-ATAAGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* * *
63694794 TCGAAATACCCCCATAAGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* *
63694821 CCAAAATACCCCCATAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* *
63694848 TCGAAATACCCCTATAAGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* * * *
63694875 TCGAAATACCCTTGTAGAGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* * *
63694902 TCGAAATACCCTTGTAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
*
63694929 CCGAAATACCCCT-GAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* * *
63694955 CTGAAATACCCCCATAGGATAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* *
63694982 CCGAAATACCCTTGTAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
*
63695009 CCGAAATACCCCTGTAGGGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
*** * **
63695036 TTAAAATACCCCTGTAAAGTAAAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
* * *
63695063 CTGAAATACCCCCATAGGGTAAAATAA
1 CCGAAATACCCCTATAGGGTAAAATGA
* *
63695090 CCGAAATACCCCTGTAAGGT-AAATGA
1 CCGAAATACCCCTATAGGGTAAAATGA
63695116 C
1 C
63695117 TGTAATACTC
Statistics
Matches: 351, Mismatches: 48, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
26 55 0.16
27 294 0.84
28 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
CCGAAATACCCCTATAGGGTAAAATGA
Found at i:63696738 original size:28 final size:28
Alignment explanation
Indices: 63696675--63696825 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
63696665 ATATTAAGTC
*
63696675 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
63696702 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
63696730 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
63696758 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
63696786 CGCACACTTAGTGCTGTACAATTTAAACT
1 CGCACACTTAGTGCTATATAA-TCAAACT
63696815 CGCACACTTAG
1 CGCACACTTAG
63696826 CGCCAATCTC
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63699124 original size:34 final size:34
Alignment explanation
Indices: 63699077--63699163 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
63699067 ATTACTGCAC
*
63699077 TGATACTATTACTGTAATGGGCTAAGGCCCACAT
1 TGATACTATTACTGTAATGGGCTAAGGCCCAAAT
** *
63699111 TGATACTGA-TACTGTAATTTGCTCAGGCCCAAAT
1 TGATACT-ATTACTGTAATGGGCTAAGGCCCAAAT
63699145 TGCAT-CTATCTACTG-AATG
1 TG-ATACTAT-TACTGTAATG
63699164 ATTGACTTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
33 1 0.02
34 35 0.80
35 8 0.18
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (34 bp):
TGATACTATTACTGTAATGGGCTAAGGCCCAAAT
Found at i:63706781 original size:38 final size:38
Alignment explanation
Indices: 63706705--63706824 Score: 150
Period size: 38 Copynumber: 3.1 Consensus size: 38
63706695 ACATAACACC
* ***
63706705 AGCACGAAGCCTACGGGACTTTAAACTTAGATATAATACT
1 AGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATACT
* * *
63706745 AGCACTAGGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACT
*
63706783 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCT
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACT
63706821 AGCA
1 AGCA
63706825 TATAGTCCGC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
38 51 0.74
39 3 0.04
40 15 0.22
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.23
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACT
Found at i:63706837 original size:38 final size:37
Alignment explanation
Indices: 63706734--63706853 Score: 127
Period size: 38 Copynumber: 3.1 Consensus size: 37
63706724 TTTAAACTTA
*
63706734 GATATAATACTAGCACTAGGCCTGCGGGATTTAACCCG
1 GATATAATACTAGCAATA-GCCTGCGGGATTTAACCCG
*
63706772 GATATAATACCAGCACGA-AGCCTGCGGGATTTAACCCG
1 GATATAATACTAGCA--ATAGCCTGCGGGATTTAACCCG
* *
63706810 GATATAATTCTAGCATATAGTCC-GCGGGTCTTTAAGCCCG
1 GATATAATACTAGCA-ATAG-CCTGCGGG-ATTTAA-CCCG
63706850 GATA
1 GATA
63706854 CACATCAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
37 1 0.01
38 53 0.76
39 8 0.11
40 8 0.11
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (37 bp):
GATATAATACTAGCAATAGCCTGCGGGATTTAACCCG
Found at i:63706850 original size:78 final size:78
Alignment explanation
Indices: 63706688--63706853 Score: 185
Period size: 78 Copynumber: 2.1 Consensus size: 78
63706678 CCAGGTATAA
* * ** *
63706688 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGATATAATACTAGCACTAG
1 AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACTAGCAATAG
63706753 GCCTGCGGGATTT
66 GCCTGCGGGATTT
* * * *
63706766 AACCCGGATATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATTCTAGCATATA
1 AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACTAGCA-ATA
* *
63706829 GTCC-GCGGGTCTTT
65 GGCCTGCGGG-ATTT
63706843 AAGCCCGGATA
1 AA-CCCGGATA
63706854 CACATCAAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
76 22 0.30
77 13 0.18
78 39 0.53
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (78 bp):
AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACTAGCAATAG
GCCTGCGGGATTT
Found at i:63710502 original size:29 final size:29
Alignment explanation
Indices: 63710470--63710569 Score: 105
Period size: 29 Copynumber: 3.4 Consensus size: 29
63710460 TACTGATCTA
*
63710470 GCACACATAGTGCTCGGTTAAAGGAATTC
1 GCACACACAGTGCTCGGTTAAAGGAATTC
** **
63710499 GCACACACAGTGCCTCAATT-ACCG-ATCTC
1 GCACACACAGTG-CTCGGTTAAAGGAAT-TC
* *
63710528 GCACACATAGTGCTCGGTTAAAGGAATTT
1 GCACACACAGTGCTCGGTTAAAGGAATTC
63710557 GCACACACAGTGC
1 GCACACACAGTGC
63710570 CTCTAATCAT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 7 0.13
29 41 0.75
30 7 0.13
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (29 bp):
GCACACACAGTGCTCGGTTAAAGGAATTC
Found at i:63710526 original size:58 final size:58
Alignment explanation
Indices: 63710404--63710572 Score: 259
Period size: 58 Copynumber: 2.9 Consensus size: 58
63710394 GTGCCCACTG
* * * * *
63710404 ACCGATCTCGCACACATAGTGCTCGGTTGAA-TAACTCGAACACACAGAGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
63710461 ACTGATCTAGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
63710519 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
63710573 TAATCATTTG
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
57 28 0.28
58 73 0.72
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:63710787 original size:43 final size:43
Alignment explanation
Indices: 63710726--63710861 Score: 236
Period size: 43 Copynumber: 3.2 Consensus size: 43
63710716 CCTTGCTCGA
** *
63710726 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
63710769 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
63710812 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
63710855 ATCACCG
1 ATCACCG
63710862 AGTTTCATGC
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.32, C:0.35, G:0.23, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:63712491 original size:38 final size:38
Alignment explanation
Indices: 63712415--63712534 Score: 150
Period size: 38 Copynumber: 3.1 Consensus size: 38
63712405 ACATAACACC
***
63712415 AGCACGAAGCCTACGGGACTTTAAACTTAGATATAATACT
1 AGCACGAAGCCTACGGGA-TTT-AACCCGGATATAATACT
* * * *
63712455 AGCACTAGGCCTGCGGGATTTAACCCGGATATAATACC
1 AGCACGAAGCCTACGGGATTTAACCCGGATATAATACT
*
63712493 AGCACGAAGCCTACGGGATTTAACCCGGATATAATTCT
1 AGCACGAAGCCTACGGGATTTAACCCGGATATAATACT
63712531 AGCA
1 AGCA
63712535 TATAGCCCGC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 50 0.74
39 3 0.04
40 15 0.22
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (38 bp):
AGCACGAAGCCTACGGGATTTAACCCGGATATAATACT
Found at i:63712560 original size:78 final size:78
Alignment explanation
Indices: 63712398--63712563 Score: 194
Period size: 78 Copynumber: 2.1 Consensus size: 78
63712388 CCAGGTATAA
* * ** *
63712398 AACCCGAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTTAGATATAATACTAGCACTAG
1 AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACTAGCACTAA
*
63712463 GCCTGCGGGATTT
66 GCCCGCGGGATTT
* * *
63712476 AACCCGGATATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGATATAATTCTAGCA-TAT
1 AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACTAGCACTA-
*
63712538 AGCCCGCGGGTCTTT
65 AGCCCGCGGG-ATTT
63712553 AAGCCCGGATA
1 AA-CCCGGATA
63712564 CACATCAAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
75 2 0.03
76 25 0.33
77 8 0.11
78 40 0.53
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (78 bp):
AACCCGGATATAACACCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACTAGCACTAA
GCCCGCGGGATTT
Found at i:63717788 original size:54 final size:53
Alignment explanation
Indices: 63717592--63717788 Score: 166
Period size: 54 Copynumber: 3.7 Consensus size: 53
63717582 AATTTGCCAT
* * * **
63717592 TGCCATGTCTTGACATGGTCTTA-TGTGGTATCCTTGCCTTATGAACTCACCGT
1 TGCCATGCCTTGACATGGTCTTACT-TGGTATCCTTGCCTTATAAACTTACCAA
* * * ** *
63717645 TGCCACGCCTTGGCATGGTCTTACATTGGATAT--TTGCCTTATCGTAGTTTATCAA
1 TGCCATGCCTTGACATGGTCTTAC-TTGG-TATCCTTGCCTTAT--AAACTTACCAA
* * * * *
63717700 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTAT-AAACTTACCAA
*
63717754 TGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TGCCATGCCTTGACATGGTCTTACTTGGTATCCTT
63717789 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 27, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
53 31 0.28
54 42 0.38
55 37 0.34
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATAAACTTACCAA
Found at i:63721982 original size:47 final size:47
Alignment explanation
Indices: 63721374--63721947 Score: 999
Period size: 47 Copynumber: 12.2 Consensus size: 47
63721364 TTAGGATTTT
* * *
63721374 ATGTGATGAATGTGAATATGCATATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721421 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721468 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721515 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721562 ATGTGATGAATGTGACCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
63721609 ATGTGATGAATATGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721656 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63721703 ATGTGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 A--TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63721752 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721799 ATGTGATGAATGTGAACATGC--ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721844 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
63721891 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63721938 ATGTGATGAA
1 ATGTGATGAA
63721948 CATGGATGTG
Statistics
Matches: 505, Mismatches: 18, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
45 43 0.09
47 416 0.82
49 46 0.09
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:63722017 original size:46 final size:46
Alignment explanation
Indices: 63721961--63722064 Score: 172
Period size: 46 Copynumber: 2.3 Consensus size: 46
63721951 GGATGTGTAT
* * *
63721961 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
*
63722007 ATATGAGGTAAAGCCAAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
63722053 ATATGAGGTAAA
1 ATATGAGGTAAA
63722065 TGAATTACAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.37, C:0.08, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:63729224 original size:53 final size:55
Alignment explanation
Indices: 63729161--63729305 Score: 152
Period size: 53 Copynumber: 2.7 Consensus size: 55
63729151 TTCCTTTTTA
* * *
63729161 AACTTACCATTTCCTTGTCTTGACATGGTCTTACATGGTATCCTTGC-CT-T-AT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCTCTGTCAT
* * * * * *
63729213 GAACTTACCATTGCCGTGCCTTGGCATGGTCTAACATGGGATCTTTGCTTTGTCAT
1 -AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCTCTGTCAT
* * *
63729269 AATTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG
63729306 ATTTTCTTAC
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 40 0.54
54 1 0.01
55 31 0.42
56 2 0.03
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCTCTGTCAT
Found at i:63736005 original size:27 final size:27
Alignment explanation
Indices: 63735948--63736123 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
63735938 ATATTGAGTC
* * *
63735948 CGCACACTCAGTGCTATATA--CAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63735973 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63736000 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63736028 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63736055 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63736082 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63736109 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63736124 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
25 17 0.13
27 87 0.68
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63736066 original size:82 final size:81
Alignment explanation
Indices: 63735972--63736122 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
63735962 TATATACAAC
* *
63735972 TCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACT
1 TCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACT
63736036 TAGTGCCGCATGGTCAAT
64 TAGTGCCGCATGGTCAAT
* **
63736054 TCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
63736119 GTGC
66 GTGC
63736123 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:63743154 original size:27 final size:27
Alignment explanation
Indices: 63743124--63743301 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63743114 ATATTGAGTC
* * * *
63743124 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63743151 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63743178 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63743206 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63743233 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63743260 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63743287 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63743302 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63743263 original size:82 final size:81
Alignment explanation
Indices: 63743145--63743300 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63743135 TGCTATATAA
* *
63743145 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
63743210 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
63743227 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
63743291 CACTTAGTGC
65 CACTTAGTGC
63743301 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63750732 original size:28 final size:28
Alignment explanation
Indices: 63750701--63750770 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
63750691 ATATATGTAT
*
63750701 ATGGCACTTAGTGTGTAAAATATTAAGA
1 ATGGCACTTAGTGTGCAAAATATTAAGA
* * * *
63750729 ATGGCACTTGGTGTGCAAGATATTGAGT
1 ATGGCACTTAGTGTGCAAAATATTAAGA
*
63750757 ATGGTACTTAGTGT
1 ATGGCACTTAGTGT
63750771 ATGAGACATC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAATATTAAGA
Found at i:63752512 original size:26 final size:26
Alignment explanation
Indices: 63752477--63752528 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
63752467 TTTATTTGAA
63752477 TGAAATTTTATGGCCCGATTTTATGT
1 TGAAATTTTATGGCCCGATTTTATGT
*
63752503 TGAAATTTTATGGCTCGATTTTATGT
1 TGAAATTTTATGGCCCGATTTTATGT
63752529 GCTTGTGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (26 bp):
TGAAATTTTATGGCCCGATTTTATGT
Found at i:63754401 original size:27 final size:27
Alignment explanation
Indices: 63754345--63754403 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
63754335 TACGTCTCAA
* *
63754345 AGGGGCATATCAGTCATTTTACCATGT
1 AGGGGCATATCAGTCATTTCACAATGT
*
63754372 AGGGGCATTTCAGTCATTTCATCAAT-T
1 AGGGGCATATCAGTCATTTCA-CAATGT
63754399 AGGGG
1 AGGGG
63754404 GTCTAGATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (27 bp):
AGGGGCATATCAGTCATTTCACAATGT
Found at i:63755704 original size:30 final size:30
Alignment explanation
Indices: 63755668--63755727 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
63755658 TTCACCTTCT
*
63755668 CCTTTTGTCACTGGTCGAATACCCTCTTTC
1 CCTTTTGTCACTGGCCGAATACCCTCTTTC
*
63755698 CCTTTTGTCACTGGCCGTATACCCTCTTTC
1 CCTTTTGTCACTGGCCGAATACCCTCTTTC
63755728 TTCTTTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.12, C:0.35, G:0.13, T:0.40
Consensus pattern (30 bp):
CCTTTTGTCACTGGCCGAATACCCTCTTTC
Found at i:63759704 original size:29 final size:29
Alignment explanation
Indices: 63759631--63759710 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
63759621 CACTATGTGT
*
63759631 CGGTGATTATATTTATCAGATACTACGTAC
1 CGGTGATCATA-TTATCAGATACTACGTAC
* * *
63759661 CGATGA-CTATTTTATCAGATACTATGTAC
1 CGGTGATC-ATATTATCAGATACTACGTAC
*
63759690 TGGTGATCATATTATCAGATA
1 CGGTGATCATATTATCAGATA
63759711 GTTTGTATCA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
29 33 0.80
30 8 0.20
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (29 bp):
CGGTGATCATATTATCAGATACTACGTAC
Found at i:63767499 original size:27 final size:27
Alignment explanation
Indices: 63767349--63767491 Score: 214
Period size: 27 Copynumber: 5.3 Consensus size: 27
63767339 GGAGCATTTT
*
63767349 AGTCATTTTACCATATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
* *
63767376 AGTTATTTTACCTCATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
* *
63767403 AGTCATTTTACCTCATAGGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
* *
63767430 GGTCATTTTACCACTTAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
*
63767457 AGTCATTTCACCACATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
63767484 AGTCATTT
1 AGTCATTT
63767492 CATCACATTG
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (27 bp):
AGTCATTTTACCACATAAGGGCAAAAC
Found at i:63767730 original size:17 final size:18
Alignment explanation
Indices: 63767708--63767743 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
63767698 AACACGTCCG
63767708 TGTGGGGCCCACA-GGCC
1 TGTGGGGCCCACACGGCC
63767725 TGTGGGGCCCACACGGCC
1 TGTGGGGCCCACACGGCC
63767743 T
1 T
63767744 ATTTCTGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.11, C:0.36, G:0.39, T:0.14
Consensus pattern (18 bp):
TGTGGGGCCCACACGGCC
Found at i:63769573 original size:47 final size:47
Alignment explanation
Indices: 63769505--63769724 Score: 243
Period size: 47 Copynumber: 4.7 Consensus size: 47
63769495 GTTGTTGGCT
* *
63769505 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACA-GATGAGAGCC
* *
63769551 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CACTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCAC--AGATGAGAGCC
* * * *
63769599 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCAC-AGATGAGAGCC
* *** *
63769645 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACAGATGAGAGCC
*
63769692 AGTGTAAGACCGTGTCTAGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
63769725 ACCTTACCCA
Statistics
Matches: 148, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
46 33 0.22
47 83 0.56
48 31 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACAGATGAGAGCC
Found at i:63769663 original size:94 final size:93
Alignment explanation
Indices: 63769502--63769724 Score: 306
Period size: 94 Copynumber: 2.4 Consensus size: 93
63769492 GTTGTTGTTG
*
63769502 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTC
63769567 TAGGACATGGCATCGGCAC-TGAGACGAGA
66 TAGGACATGGCATC-G-ACTTGAGACGAGA
* * *
63769596 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCATGT
* *
63769660 CTAGGACATGGCATCGACTTGAGATGTGA
65 CTAGGACATGGCATCGACTTGAGACGAGA
* * *
63769689 GCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
63769725 ACCTTACCCA
Statistics
Matches: 116, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
92 2 0.02
93 20 0.17
94 85 0.73
95 9 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGACTTGAGACGAGA
Found at i:63776764 original size:19 final size:19
Alignment explanation
Indices: 63776713--63776764 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
63776703 ATGCATTATT
*
63776713 ATTTATGCTTT-AATTGTG
1 ATTTATTCTTTGAATTGTG
* * *
63776731 TTATTATTGTATGAATTGTG
1 AT-TTATTCTTTGAATTGTG
63776751 ATTTATTCTTTGAA
1 ATTTATTCTTTGAA
63776765 CGAATTTGAA
Statistics
Matches: 25, Mismatches: 7, Indels: 3
0.71 0.20 0.09
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.25, C:0.04, G:0.15, T:0.56
Consensus pattern (19 bp):
ATTTATTCTTTGAATTGTG
Found at i:63776911 original size:42 final size:42
Alignment explanation
Indices: 63776852--63776972 Score: 154
Period size: 43 Copynumber: 2.9 Consensus size: 42
63776842 TAGGGTTAGT
*
63776852 TGAGATTACGTGTAAGACCATATCTAGGATATGGTATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
* * *
63776894 TGAGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATA-TCTAGGATA-TGGCATCGATA
** *
63776937 TGAGATCCCATGTAAGACCATATCTAGGATATGGCA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCA
63776973 CTGGTATGAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:63785971 original size:13 final size:13
Alignment explanation
Indices: 63785953--63785977 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63785943 TGGTGGTGCA
63785953 CACGGTCGTGTCG
1 CACGGTCGTGTCG
63785966 CACGGTCGTGTC
1 CACGGTCGTGTC
63785978 TTTCTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGTCGTGTCG
Found at i:63788615 original size:40 final size:39
Alignment explanation
Indices: 63788531--63788755 Score: 197
Period size: 40 Copynumber: 5.6 Consensus size: 39
63788521 TTGAATGCTG
* * *
63788531 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
63788571 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* * *
63788610 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAA
1 -TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* * *
63788651 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACTAAA
* *
63788691 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACTAAA
* * *
63788730 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGT-CCGAAGGCATTTG
63788756 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
39 35 0.22
40 107 0.69
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:63788668 original size:80 final size:79
Alignment explanation
Indices: 63788531--63788755 Score: 265
Period size: 80 Copynumber: 2.8 Consensus size: 79
63788521 TTGAATGCTG
* * * * *
63788531 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
63788595 TGTGCGAGATA-CAAA
64 TGTGCGAGATATCAAA
* *
63788610 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATT
* * *
63788675 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * * *
63788691 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
63788756 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 39 0.31
80 71 0.57
81 14 0.11
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:63788773 original size:79 final size:80
Alignment explanation
Indices: 63788531--63788788 Score: 206
Period size: 80 Copynumber: 3.2 Consensus size: 80
63788521 TTGAATGCTG
* * * * * * *
63788531 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGT-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
* **
63788594 TTGTGCGAGAT-AC-AAA
64 TCGAACGAG-TGACTAAA
* * * *
63788610 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGGTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** * *
63788675 CGTGCGAGTTATTAAA
65 CGAACGAGTGACTAAA
* * * *
63788691 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
63788755 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
63788770 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
63788789 TACGTGATTT
Statistics
Matches: 150, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
78 16 0.11
79 50 0.33
80 70 0.47
81 14 0.09
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGGTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:63791320 original size:37 final size:37
Alignment explanation
Indices: 63791270--63791344 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
63791260 TTATTACGAA
* *
63791270 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
63791307 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
63791344 G
1 G
63791345 CCTTTAGAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:63791584 original size:47 final size:47
Alignment explanation
Indices: 63791467--63791766 Score: 494
Period size: 47 Copynumber: 6.4 Consensus size: 47
63791457 CCCTTCGGGA
* * * * * * *
63791467 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63791514 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63791560 CTTATCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63791607 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63791654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63791701 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63791748 CTTATCACATATATACACT
1 CTTATCACATATATACACT
63791767 GTCTTGGCTG
Statistics
Matches: 237, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 38 0.16
47 199 0.84
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63798203 original size:45 final size:45
Alignment explanation
Indices: 63798154--63798316 Score: 163
Period size: 45 Copynumber: 3.6 Consensus size: 45
63798144 CTATAAGCGA
* *
63798154 ACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTG
1 ACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTG
* * * *
63798199 ACTCGGACTCAACTCAACGAGTTCGTGCTAGTTAC-AAT-C-TCACG-A
1 ACTCGGACTCAACTCAACGAGTTCGGGC--GTT-CGCATCCAT-AAGTG
* * *
63798244 ACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATTAAGTG
1 ACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA-TAAGTG
63798290 AACTCGGACTCAACTCAACGAGTTCGG
1 -ACTCGGACTCAACTCAACGAGTTCGG
63798317 ATGCTCACCA
Statistics
Matches: 94, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 1 0.01
45 53 0.56
46 4 0.04
47 30 0.32
48 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
ACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTG
Found at i:63805741 original size:90 final size:91
Alignment explanation
Indices: 63805636--63805802 Score: 241
Period size: 90 Copynumber: 1.8 Consensus size: 91
63805626 CGCCCATAAG
* * *
63805636 CGAACTCGGACTCAACTCAACGAGCTCGGGC-GTCGCATCCATAAGTGAACTCGGA-TCAACTTA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACAGTCGCATCCATAAGT-AA-TCGGACTCAACTCA
*
63805699 ATGAGTTC-GATGCCTAGTTACATCTCA
64 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
63805726 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTAATCGGACTCAACTCAAC
1 CGAACTCAGACTCAACTCAACGAGCTCGGACAGTCGCATCCATAAGTAATCGGACTCAACTCAAC
63805791 GAGTTCGGATGC
66 GAGTTCGGATGC
63805803 TCAACCATCC
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
89 5 0.07
90 44 0.65
91 19 0.28
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (91 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACAGTCGCATCCATAAGTAATCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:63812116 original size:48 final size:45
Alignment explanation
Indices: 63812056--63812314 Score: 222
Period size: 45 Copynumber: 5.6 Consensus size: 45
63812046 CACATTATGG
* * **
63812056 CACTTTCACATTCCAATCACGTTGCCACTCCGCCCTGTCACATATATA
1 CACTTTCACATT-C-ATCACGTCGCCATTAAGCCCT-TCACATATATA
* * *
63812104 CACTTTCACATTCATCACACTCGCCATTAGGCCTTAATCACATATATA
1 CACTTTCACATTCATCAC-GTCGCCATTAAGCCCT--TCACATATATA
*
63812152 CACTTTCACATTCATCACGTCGGCATTAAG-CCTTACACATATATA
1 CACTTTCACATTCATCACGTCGCCATTAAGCCCTT-CACATATATA
* * *
63812197 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATA
1 CACTTTCACATTCATCACGTC-GCCATTAAGCCCT-TCACATATATA
* * * * * *
63812243 CACTTTCACA-GCATCACATCGCCATGAGGCCTTATC-CACATATA
1 CACTTTCACATTCATCACGTCGCCATTAAGCCCT-TCACATATATA
*
63812287 CAC-TTCACATTCATCACATCGGCCATTA
1 CACTTTCACATTCATCACGTC-GCCATTA
63812315 GGCCTTGATG
Statistics
Matches: 183, Mismatches: 19, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
43 8 0.04
44 33 0.18
45 45 0.25
46 29 0.16
47 26 0.14
48 42 0.23
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.29
Consensus pattern (45 bp):
CACTTTCACATTCATCACGTCGCCATTAAGCCCTTCACATATATA
Found at i:63812206 original size:45 final size:46
Alignment explanation
Indices: 63812093--63812337 Score: 331
Period size: 45 Copynumber: 5.3 Consensus size: 46
63812083 CTCCGCCCTG
*
63812093 TCACATATATACACTTTCACATTCATCACACTCGCCATTAGGCCTTAA
1 TCACATATATACACTTTCACATTCATCACA-TCGGCATTAGGCCTT-A
* *
63812141 TCACATATATACACTTTCACATTCATCACGTCGGCATTAAGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTA
63812187 -CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTA
* * *
63812233 TCACA-ATATACACTTTCACA-GCATCACATCGCCATGAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTA
*
63812277 TC-CACATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTGA
1 TCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTT-A
63812323 TGCACATATA-ACACT
1 T-CACATATATACACT
63812338 GTCTTGGCTG
Statistics
Matches: 176, Mismatches: 12, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
43 8 0.05
44 31 0.18
45 52 0.30
46 29 0.16
47 22 0.12
48 34 0.19
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (46 bp):
TCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTA
Found at i:63812206 original size:93 final size:92
Alignment explanation
Indices: 63812093--63812337 Score: 349
Period size: 93 Copynumber: 2.7 Consensus size: 92
63812083 CTCCGCCCTG
63812093 TCACATATATACACTTTCACATTCATCACACTC-GCCATTAGGCCTTAATCACATATATACACTT
1 TCACATATATACACTTTCACATTCATCACA-TCGGCCATTAGGCCTT-ATCACATATATACACTT
* * * *
63812157 TCACATTCATCACGTCGGCATTAAGCCTTA
64 TCACA-GCATCACATCGCCATGAAGCCTTA
63812187 -CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
63812250 ACAGCATCACATCGCCATGAGGCCTTA
66 ACAGCATCACATCGCCATGAAGCCTTA
*
63812277 TC-CACATATACAC-TTCACATTCATCACATCGGCCATTAGGCCTTGATGCACATATA-ACACT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT-AT-CACATATATACACT
63812338 GTCTTGGCTG
Statistics
Matches: 140, Mismatches: 6, Indels: 13
0.88 0.04 0.08
Matches are distributed among these distances:
89 31 0.22
90 31 0.22
91 25 0.18
92 11 0.08
93 42 0.30
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (92 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACAGCATCACATCGCCATGAAGCCTTA
Found at i:63817511 original size:46 final size:45
Alignment explanation
Indices: 63817461--63817634 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
63817451 TGGTTGAGCA
63817461 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* * *
63817507 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T-G
* *
63817551 GCATCGAACTCGTTGAGATTGAGTCCGAGTTCACTTATGGATGC-ACG
1 TC--CGAACTCGTTGAG-TTGAGTCCGAGTTCACTTATGGATGCAATG
* *
63817598 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63817635 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 24 0.22
45 13 0.12
46 43 0.39
47 15 0.14
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:63825040 original size:46 final size:46
Alignment explanation
Indices: 63824990--63825164 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
63824980 TGGTTGAGCA
63824990 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63825036 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63825080 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63825128 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63825165 CGGGTTACAT
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 7 0.06
46 76 0.70
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63825144 original size:92 final size:93
Alignment explanation
Indices: 63824987--63825157 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
63824977 GGATGGTTGA
* *
63824987 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63825052 TGAGT-CGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63825079 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63825144 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63825158 CTTATGGCGG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 67 0.89
93 8 0.11
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63828909 original size:20 final size:20
Alignment explanation
Indices: 63828883--63828930 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63828873 TTCCATATTT
*
63828883 CAGAGGCACCGTAATGCTTA
1 CAGAGGCACCATAATGCTTA
* * *
63828903 TAGAGGCACTATAGTGCTTA
1 CAGAGGCACCATAATGCTTA
63828923 CAGAGGCA
1 CAGAGGCA
63828931 TGAATCTGCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (20 bp):
CAGAGGCACCATAATGCTTA
Found at i:63828991 original size:20 final size:20
Alignment explanation
Indices: 63828953--63829032 Score: 97
Period size: 20 Copynumber: 4.0 Consensus size: 20
63828943 TAAGGTTACT
* *
63828953 GAAGTAGAAACAAGAGTACC
1 GAAGTACAAACAGGAGTACC
* * *
63828973 AAACTACAAACAGGTGTACC
1 GAAGTACAAACAGGAGTACC
**
63828993 GAAGTACAAGTAGGAGTACC
1 GAAGTACAAACAGGAGTACC
63829013 GAAGTACAAACAGGAGTACC
1 GAAGTACAAACAGGAGTACC
63829033 TGTAATAGCT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.45, C:0.19, G:0.24, T:0.12
Consensus pattern (20 bp):
GAAGTACAAACAGGAGTACC
Found at i:63831059 original size:53 final size:53
Alignment explanation
Indices: 63830986--63831089 Score: 154
Period size: 53 Copynumber: 2.0 Consensus size: 53
63830976 AGTTACATAG
* * *
63830986 CTTAGCACACGGCCTAACACATGGGCGTGTGTGGCACTCATAGTGTTACACGA
1 CTTAGCACACGACCTAACACACGGGCGTGTGTAGCACTCATAGTGTTACACGA
* * *
63831039 CTTAGCACATGACCTGACACACGGGTGTGTGTAGCACTCATAGTGTTACAC
1 CTTAGCACACGACCTAACACACGGGCGTGTGTAGCACTCATAGTGTTACAC
63831090 AACCTGGCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (53 bp):
CTTAGCACACGACCTAACACACGGGCGTGTGTAGCACTCATAGTGTTACACGA
Found at i:63834837 original size:27 final size:27
Alignment explanation
Indices: 63834808--63834941 Score: 187
Period size: 27 Copynumber: 5.0 Consensus size: 27
63834798 CCCCAAAATA
* * *
63834808 GGTAAAATAACCGTAATACCCTTGTAA
1 GGTAAAATGACCGTAATACCCCTGTAG
63834835 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
63834862 GGTAAAATGATCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
63834889 GGTAAAATGACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
63834916 GGTAAAATGATCGTATTACCCCTGTA
1 GGTAAAATGACCGTAATACCCCTGTA
63834942 TGACAAAATG
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:63834950 original size:54 final size:54
Alignment explanation
Indices: 63834838--63834953 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
63834828 CTTGTAAGGT
* **
63834838 AAAATGACCGTAATACCCCTGTAGGGTAAAATGATCGTAATACCCCTATAGGGT
1 AAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATACCCCTATAGGAC
* * * *
63834892 AAAATGACCGTAATGCCCCTATAGGGTAAAATGATCGTATTACCCCTGTATGAC
1 AAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATACCCCTATAGGAC
63834946 AAAATGAC
1 AAAATGAC
63834954 GAGTAGCCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (54 bp):
AAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATACCCCTATAGGAC
Found at i:63835152 original size:27 final size:27
Alignment explanation
Indices: 63835122--63835173 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
63835112 CATTCACTAT
*
63835122 TACTGGTGGCTATGCCACAATTACTGA
1 TACTAGTGGCTATGCCACAATTACTGA
* *
63835149 TACTAGTGGCTTTGCCACATTTACT
1 TACTAGTGGCTATGCCACAATTACT
63835174 TTTCTGGCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (27 bp):
TACTAGTGGCTATGCCACAATTACTGA
Found at i:63838628 original size:55 final size:54
Alignment explanation
Indices: 63838473--63838679 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
63838463 TTCCCTTTTA
* * *
63838473 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
63838526 AACTCACCATTGCCAGGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
63838580 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
63838635 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63838680 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 38 0.31
55 40 0.33
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:63841488 original size:39 final size:40
Alignment explanation
Indices: 63841316--63841557 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
63841306 CGAAATTTAA
* *
63841316 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63841356 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63841396 CCGGATTTAGTAATTCGCACAAATGCCTTCGGGGCTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63841436 CCGGATTTAGTAACTCACACAAATGCCTTCGGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63841475 CCGGATATAGTAACTTGCACAAATGCCTTCGGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
63841514 CCGGA-ACTAGTCACTAGCGCAATTGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
63841554 CCGG
1 CCGG
63841558 TTATCATCCA
Statistics
Matches: 178, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 1 0.01
39 70 0.39
40 107 0.60
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63843465 original size:23 final size:23
Alignment explanation
Indices: 63843344--63843485 Score: 135
Period size: 24 Copynumber: 6.0 Consensus size: 23
63843334 GGACTCATCA
*
63843344 CAGCTCGTATGAGCTTAATGATATAT
1 CAGCTCGTATGAGCTTACTG-T-T-T
* * *
63843370 CAGCTCGTAAGAGCTTATTGGTCT
1 CAGCTCGTATGAGCTTACT-GTTT
63843394 CAGCTCGTATGAGCTTACTGTTCT
1 CAGCTCGTATGAGCTTACTGTT-T
**
63843418 CAGCTCGTATGAGCTTACTAATT
1 CAGCTCGTATGAGCTTACTGTTT
*
63843441 CAGCTCGTCA-GAGCTTACCGTTT
1 CAGCTCGT-ATGAGCTTACTGTTT
*
63843464 CAGCTC-AATAGAGCTTACTGTT
1 CAGCTCGTAT-GAGCTTACTGTT
63843486 CATCAGCTTA
Statistics
Matches: 98, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.01
23 38 0.39
24 40 0.41
26 18 0.18
27 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGTTT
Found at i:63843492 original size:71 final size:74
Alignment explanation
Indices: 63843344--63843493 Score: 193
Period size: 71 Copynumber: 2.1 Consensus size: 74
63843334 GGACTCATCA
** *
63843344 CAGCTCGTATGAGCTTAATGATATATCAGCTCGTAAGAGCTTATTGGTCTCAGCTCGTATGAGCT
1 CAGCTCGTATGAGCTTAATGATATATCAGCTCGTAAGAGCTTATCCGTCTCAGCTCATATGAGCT
63843409 TACTGTTCT
66 TACTGTTCT
* * *
63843418 CAGCTCGTATGAGCTTACT-A-AT-TCAGCTCGTCAGAGCTTA-CCGTTTCAGCTCA-ATAGAGC
1 CAGCTCGTATGAGCTTAATGATATATCAGCTCGTAAGAGCTTATCCGTCTCAGCTCATAT-GAGC
63843478 TTACTGTTCAT
65 TTACTGTTC-T
63843489 CAGCT
1 CAGCT
63843494 TAGGAGGAGC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
69 2 0.03
70 22 0.32
71 23 0.34
72 2 0.03
73 1 0.01
74 18 0.26
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (74 bp):
CAGCTCGTATGAGCTTAATGATATATCAGCTCGTAAGAGCTTATCCGTCTCAGCTCATATGAGCT
TACTGTTCT
Found at i:63853147 original size:39 final size:39
Alignment explanation
Indices: 63853092--63853167 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
63853082 ACTCAACATG
* * *
63853092 GTAACCTCAGTTGTAGTGCTTTCAACGACAATACCCATA
1 GTAACCTCACTCGTAGTGCTTTCAACCACAATACCCATA
*
63853131 GTAACCTCACTCGTAGTGCTTTTAACCACAATACCCA
1 GTAACCTCACTCGTAGTGCTTTCAACCACAATACCCA
63853168 AAGTCTCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (39 bp):
GTAACCTCACTCGTAGTGCTTTCAACCACAATACCCATA
Found at i:63866823 original size:8 final size:8
Alignment explanation
Indices: 63866803--63866840 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
63866793 TTTTTGAACA
63866803 ATTTTT-T
1 ATTTTTAT
*
63866810 AGTTTTAT
1 ATTTTTAT
63866818 ATTTTTAT
1 ATTTTTAT
63866826 ATTTTTAT
1 ATTTTTAT
63866834 ATATTTT
1 AT-TTTT
63866841 TTGAACTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
7 5 0.19
8 18 0.67
9 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (8 bp):
ATTTTTAT
Found at i:63868126 original size:20 final size:20
Alignment explanation
Indices: 63868097--63868234 Score: 163
Period size: 20 Copynumber: 7.0 Consensus size: 20
63868087 TATGGGAATT
* * *
63868097 TACTTCGGTACTCCTGTATG
1 TACTTTGGTACCCCTGTTTG
63868117 TACTTTGGTACCCCTGTTTG
1 TACTTTGGTACCCCTGTTTG
** * *
63868137 TACTTCCGTA-CCATATTTG
1 TACTTTGGTACCCCTGTTTG
*
63868156 TACTTCGGTACCCCTGTTTG
1 TACTTTGGTACCCCTGTTTG
*
63868176 TACTTTGGTA-CCCTATTTG
1 TACTTTGGTACCCCTGTTTG
*
63868195 TACTTTGGTACCCCTATTTG
1 TACTTTGGTACCCCTGTTTG
*
63868215 TACTTTTGTACCCCTGTTTG
1 TACTTTGGTACCCCTGTTTG
63868235 CACATTCGTG
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
19 34 0.33
20 68 0.67
ACGTcount: A:0.14, C:0.25, G:0.17, T:0.44
Consensus pattern (20 bp):
TACTTTGGTACCCCTGTTTG
Found at i:63868213 original size:59 final size:59
Alignment explanation
Indices: 63868097--63868234 Score: 188
Period size: 59 Copynumber: 2.3 Consensus size: 59
63868087 TATGGGAATT
* * *
63868097 TACTTCGGTACTCCTGTATGTACTTTGGTACCCCTGTTTGTACTTCCGTACCATATTTG
1 TACTTCGGTACCCCTGTTTGTACTTTGGTACCCCTATTTGTACTTCCGTACCATATTTG
** *
63868156 TACTTCGGTACCCCTGTTTGTACTTTGGTA-CCCTATTTGTACTTTGGTACCCCTATTTG
1 TACTTCGGTACCCCTGTTTGTACTTTGGTACCCCTATTTGTACTTCCGTA-CCATATTTG
**
63868215 TACTTTTGTACCCCTGTTTG
1 TACTTCGGTACCCCTGTTTG
63868235 CACATTCGTG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
58 16 0.23
59 54 0.77
ACGTcount: A:0.14, C:0.25, G:0.17, T:0.44
Consensus pattern (59 bp):
TACTTCGGTACCCCTGTTTGTACTTTGGTACCCCTATTTGTACTTCCGTACCATATTTG
Found at i:63868220 original size:39 final size:39
Alignment explanation
Indices: 63868097--63868219 Score: 174
Period size: 39 Copynumber: 3.1 Consensus size: 39
63868087 TATGGGAATT
* *
63868097 TACTTCGGTACTCCTGTATGTACTTTGGTACCCCTGTTTG
1 TACTTCGGTAC-CCTATTTGTACTTTGGTACCCCTGTTTG
* * *
63868137 TACTTCCGTACCATATTTGTACTTCGGTACCCCTGTTTG
1 TACTTCGGTACCCTATTTGTACTTTGGTACCCCTGTTTG
* *
63868176 TACTTTGGTACCCTATTTGTACTTTGGTACCCCTATTTG
1 TACTTCGGTACCCTATTTGTACTTTGGTACCCCTGTTTG
63868215 TACTT
1 TACTT
63868220 TTGTACCCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 63 0.86
40 10 0.14
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.44
Consensus pattern (39 bp):
TACTTCGGTACCCTATTTGTACTTTGGTACCCCTGTTTG
Found at i:63868684 original size:21 final size:21
Alignment explanation
Indices: 63868655--63868698 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
63868645 AAATATAAAT
* *
63868655 AAAACTTATAATTATTTTTTA
1 AAAACTTATAATGAATTTTTA
* *
63868676 AAAATTTATTATGAATTTTTA
1 AAAACTTATAATGAATTTTTA
63868697 AA
1 AA
63868699 GTTAGAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
AAAACTTATAATGAATTTTTA
Found at i:63873074 original size:19 final size:21
Alignment explanation
Indices: 63873027--63873076 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
63873017 AGAGTGGTCG
63873027 CACGCCCGTGTGGACCATACA
1 CACGCCCGTGTGGACCATACA
* **
63873048 CACACCCGTGT-GA-CATGGA
1 CACGCCCGTGTGGACCATACA
63873067 CACGCCCGTG
1 CACGCCCGTG
63873077 CCTAGACCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 13 0.52
20 2 0.08
21 10 0.40
ACGTcount: A:0.22, C:0.38, G:0.26, T:0.14
Consensus pattern (21 bp):
CACGCCCGTGTGGACCATACA
Found at i:63874622 original size:56 final size:54
Alignment explanation
Indices: 63874510--63874661 Score: 171
Period size: 56 Copynumber: 2.8 Consensus size: 54
63874500 ATATAGCACA
* * * * *
63874510 CCTCTCAACAAGGCTACATAAGAGCACCCGGACCTAGCATGCATCACATAACCATG
1 CCTCTCAACAGGGCTACA-AA-AGCTCCCGGACATAGCATGCACCACATAAACATG
* * *
63874566 CCTCTCAACAGGGCTACAAAAGCTCCCGGGCATATCATGTACCACATAATTACATG
1 CCTCTCAACAGGGCTACAAAAGCTCCCGGACATAGCATGCACCACATAA--ACATG
* *
63874622 CCTCTCAAC-GGGCTACACAAGCTCCCGGACCTAGCATGCA
1 CCTCTCAACAGGGCTACAAAAGCTCCCGGACATAGCATGCA
63874662 TTATGTCATC
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
54 23 0.28
55 28 0.35
56 30 0.37
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.18
Consensus pattern (54 bp):
CCTCTCAACAGGGCTACAAAAGCTCCCGGACATAGCATGCACCACATAAACATG
Found at i:63878323 original size:19 final size:17
Alignment explanation
Indices: 63878301--63878346 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
63878291 TCGGGCCGCG
*
63878301 ATGGGCCGAAAGGAGCCAT
1 ATGGGCCCAAAGG-GCC-T
*
63878320 ATGGGCCCAATGGGCCT
1 ATGGGCCCAAAGGGCCT
63878337 ATGGGCCCAA
1 ATGGGCCCAA
63878347 TTGGATAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.44
18 3 0.12
19 11 0.44
ACGTcount: A:0.26, C:0.26, G:0.35, T:0.13
Consensus pattern (17 bp):
ATGGGCCCAAAGGGCCT
Found at i:63878542 original size:27 final size:27
Alignment explanation
Indices: 63878519--63878767 Score: 327
Period size: 27 Copynumber: 9.2 Consensus size: 27
63878509 TTAGTTTACC
* *
63878519 AAATTAACAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
63878546 AAATTACTAGAATACCCATGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
63878573 AAATTACCAAAATACCCCTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
63878600 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
63878627 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
63878654 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
63878681 AAATTGCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
63878708 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
63878735 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
63878762 AAATTA
1 AAATTA
63878768 TTGAAATACC
Statistics
Matches: 191, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:63878774 original size:27 final size:26
Alignment explanation
Indices: 63878519--63878839 Score: 209
Period size: 27 Copynumber: 11.9 Consensus size: 26
63878509 TTAGTTTACC
* *
63878519 AAATTAACAAAATATCCCTGGTTTGTA
1 AAATTATCAAAATA-CCCTGATTTGTA
* * *
63878546 AAATTA-CTAGAATACCCATGGTTTATA
1 AAATTATC-AAAATACCC-TGATTTGTA
* * **
63878573 AAATTACCAAAATACCCCTGGTTTACA
1 AAATTATCAAAATA-CCCTGATTTGTA
* *
63878600 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATA-CCCTGATTTGTA
*
63878627 AAATTA-CTAAAATACCCTTTG-TTTATA
1 AAATTATC-AAAATACCC--TGATTTGTA
* * *
63878654 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATA-CCCTGATTTGTA
** *
63878681 AAATTGCCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATA-CCCTGATTTGTA
63878708 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTATCAAAATA-CCCTGA-TTTGTA
* *
63878735 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTATCAAAATA-CCCTGATTTGTA
** **
63878762 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTATCAAAATACCCT-GATTTGTA
** *
63878789 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATCAAAATACCCT-GATTTGTA
* *
63878816 AAATTACCAAAGTACCCTTGATTT
1 AAATTATCAAAATACCC-TGATTT
63878840 ACAGAATTAC
Statistics
Matches: 251, Mismatches: 29, Indels: 28
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.06
27 225 0.90
28 12 0.05
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
AAATTATCAAAATACCCTGATTTGTA
Found at i:63878789 original size:81 final size:80
Alignment explanation
Indices: 63878519--63878839 Score: 245
Period size: 81 Copynumber: 4.0 Consensus size: 80
63878509 TTAGTTTACC
* * *** * * * *
63878519 AAATTAACAAAATATCCCTGGTTTGTAAAATTA-CTAGAATACCCATGGTTTATAAAATTACCAA
1 AAATTACCAAAATACCCCTGACCTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAA
* **
63878583 AATACCCCTGGTTTACA
65 AATA-CCCTGATTTGTA
*** * * * *
63878600 AAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAAAATACCCTTTGTTTATAAAATCACCAA
1 AAATTACCAAAATACCCCTGACCTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAA
*
63878664 AATACCCCTGGTTTGTA
65 AATA-CCCTGATTTGTA
* ***
63878681 AAATTGCCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGACCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
63878746 ATATCCCTGATTTGTG
66 ATA-CCCTGATTTGTA
*** ** * *
63878762 AAATTATTGAAATA-CCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATTACCAAAATACCCCT-GACCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACCA
*
63878825 AAGTACCCTTGATTT
64 AAATACCC-TGATTT
63878840 ACAGAATTAC
Statistics
Matches: 208, Mismatches: 28, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
80 12 0.06
81 195 0.94
82 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGACCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCTGATTTGTA
Found at i:63878909 original size:27 final size:27
Alignment explanation
Indices: 63878871--63879172 Score: 428
Period size: 27 Copynumber: 11.2 Consensus size: 27
63878861 CGATTTACAA
*
63878871 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
63878898 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
63878925 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
63878952 AATTACCGCAATACCCCTGTACGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
63878979 AATTATTGCAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
63879006 AATTAC-CAGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
63879033 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
63879060 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
63879087 AAGTA-TGCAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
63879113 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
63879140 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
63879167 AATTAC
1 AATTAC
63879173 CGAGACACCT
Statistics
Matches: 243, Mismatches: 29, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
26 22 0.09
27 220 0.91
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:63879685 original size:22 final size:21
Alignment explanation
Indices: 63879625--63879689 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
63879615 TTAAAGCCTT
*
63879625 CTGATTATGGCTTCGTGTCAAC
1 CTGATTATGGCTT-GTGCCAAC
* *
63879647 CT-ACATATAGCTCTGTGCCAAC
1 CTGA-TTATGGCT-TGTGCCAAC
63879669 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCT-TGTGCCAA
63879690 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.03
22 31 0.91
23 2 0.06
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (21 bp):
CTGATTATGGCTTGTGCCAAC
Found at i:63879878 original size:27 final size:27
Alignment explanation
Indices: 63879848--63879949 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 27
63879838 ATTCTGTTCA
* * *
63879848 GTGGCTTTGCTACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
63879875 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
63879902 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
63879929 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
63879950 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:63879906 original size:54 final size:52
Alignment explanation
Indices: 63879840--63879949 Score: 121
Period size: 54 Copynumber: 2.1 Consensus size: 52
63879830 TGCCACGTAT
* * * * * *
63879840 TCTGTTCAGTGGCTTTGCTACATTATCTGTTTCTGGTGGCTATGCCACAAATA
1 TCTGTTCAGTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCAC-AATA
* * *
63879893 TCTGTTCTGGTGGCTCTGCCACAATATCTATATCTGGTGACTCTGTCACAATA
1 TCTGTTC-AGTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATA
63879946 TCTG
1 TCTG
63879950 ATAACTGAGC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 15 0.32
54 32 0.68
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (52 bp):
TCTGTTCAGTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATA
Found at i:63880124 original size:6 final size:6
Alignment explanation
Indices: 63880110--63880202 Score: 64
Period size: 6 Copynumber: 15.2 Consensus size: 6
63880100 TTCTGTTACT
* * * * *
63880110 TGATAC TGATTC TGATTT TGATTC TG-TTACC TGATAC TAATTT TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* * *
63880159 TAATTC T-ATCACC TAATTC TGATTC TGATTC TGATTC TGATTC T
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC T
63880203 AGTTCTAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
5 4 0.06
6 56 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:63880135 original size:31 final size:31
Alignment explanation
Indices: 63880098--63880197 Score: 119
Period size: 31 Copynumber: 3.2 Consensus size: 31
63880088 TTTGATTTTA
* *
63880098 GATTCTGTTACTTGATACTGATTCTGATTTT
1 GATTCTGTTACCTGATACTGATTCTGATTCT
* *
63880129 GATTCTGTTACCTGATACTAATTTTGATTCT
1 GATTCTGTTACCTGATACTGATTCTGATTCT
* * * * *
63880160 AATTCTATCACCTAATTCTGATTCTGATTCT
1 GATTCTGTTACCTGATACTGATTCTGATTCT
63880191 GATTCTG
1 GATTCTG
63880198 ATTCTAGTTC
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (31 bp):
GATTCTGTTACCTGATACTGATTCTGATTCT
Found at i:63881319 original size:93 final size:93
Alignment explanation
Indices: 63881158--63881326 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 93
63881148 CCATAAGCGA
* * * *
63881158 ACTCGGAATCAACTCAACAAGCTCGGGCGTTTGCATCCATGAGTGAACTCAGACTCAACTCAATG
1 ACTCGGAATCAACTCAACAAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAACG
63881223 AGTTCGGATGCCTAGTTACATCTCATGT
66 AGTTCGGATGCCTAGTTACATCTCATGT
* * * *
63881251 ACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 ACTCGGAATCAACTCAACAAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAACG
63881316 AGTTCGGATGC
66 AGTTCGGATGC
63881327 TCAACCATCC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
ACTCGGAATCAACTCAACAAGCTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCATGT
Found at i:63881323 original size:46 final size:46
Alignment explanation
Indices: 63881148--63881323 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
63881138 TGTAACCCGC
* * * * * *
63881148 CCATAAGCGAACTCGGAATCAACTCAACAAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * * *
63881194 CCATGAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
63881244 CTCAT--GT--ACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
63881287 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63881324 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 3 0.03
46 56 0.53
47 25 0.24
49 3 0.03
50 6 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:63883733 original size:15 final size:15
Alignment explanation
Indices: 63883699--63883762 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
63883689 ACAAAGATAC
63883699 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
63883712 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
63883727 GAGAAATCCAGAATA
1 AAGAAATCCAGAATA
63883742 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
63883757 AAGAAA
1 AAGAAA
63883763 CCCAAGATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.13
14 3 0.07
15 35 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:63883762 original size:30 final size:28
Alignment explanation
Indices: 63883692--63883764 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 28
63883682 ATATGGAACA
63883692 AAGATACAAGAAACCGAATAAAGAAATCC
1 AAGATA-AAGAAACCGAATAAAGAAATCC
*
63883721 AAGATAGAGAAATCCAGAATAAAGAAATCC
1 AAGATAAAGAAA-CC-GAATAAAGAAATCC
63883751 -AGAATAAAGAAACC
1 AAG-ATAAAGAAACC
63883765 CAAGATACGA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
28 5 0.13
29 12 0.31
30 22 0.56
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.11
Consensus pattern (28 bp):
AAGATAAAGAAACCGAATAAAGAAATCC
Found at i:63893853 original size:16 final size:17
Alignment explanation
Indices: 63893832--63893864 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63893822 AAGGCCATCC
*
63893832 AATATAGAT-TATAACA
1 AATATACATATATAACA
63893848 AATATACATATATAACA
1 AATATACATATATAACA
63893865 TTTAGTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (17 bp):
AATATACATATATAACA
Found at i:63897698 original size:30 final size:30
Alignment explanation
Indices: 63897664--63897720 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
63897654 CCGAAGCTAG
*
63897664 TTAAATCGTACACTTAGTGCCAAAGCTCGT
1 TTAAATCGCACACTTAGTGCCAAAGCTCGT
63897694 TTAAATCGCACACTTAGTGCCAAAGCT
1 TTAAATCGCACACTTAGTGCCAAAGCT
63897721 TCCAATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (30 bp):
TTAAATCGCACACTTAGTGCCAAAGCTCGT
Found at i:63904946 original size:29 final size:29
Alignment explanation
Indices: 63904883--63904950 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
63904873 TAATCAACCG
63904883 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
63904912 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
63904941 CGCACACTTA
1 CGCACACTTA
63904951 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:63905091 original size:29 final size:30
Alignment explanation
Indices: 63905052--63905130 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
63905042 CTTAATAATC
63905052 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
63905082 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
63905111 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
63905131 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:63913084 original size:29 final size:29
Alignment explanation
Indices: 63913021--63913088 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
63913011 TAATCAACCA
63913021 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
63913050 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
63913079 CGCACACTTA
1 CGCACACTTA
63913089 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:63917358 original size:24 final size:24
Alignment explanation
Indices: 63917313--63917371 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
63917303 NNNNNNNNNN
*
63917313 TAAGCCCTTTATCATAACTGGGGCA
1 TAAGCCCTTT-TAATAACTGGGGCA
63917338 TAAGCCCTTTTAATAACTGGGGCA
1 TAAGCCCTTTTAATAACTGGGGCA
63917362 TAAG-CCTTTT
1 TAAGCCCTTTT
63917372 CACTTCCTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 6 0.18
24 17 0.52
25 10 0.30
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (24 bp):
TAAGCCCTTTTAATAACTGGGGCA
Found at i:63917447 original size:20 final size:20
Alignment explanation
Indices: 63917422--63917469 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
63917412 ATGAACATAC
63917422 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63917442 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63917462 ATCCATGT
1 AT-CATGT
63917470 TTATCAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63925356 original size:24 final size:23
Alignment explanation
Indices: 63925309--63925453 Score: 157
Period size: 25 Copynumber: 6.0 Consensus size: 23
63925299 GCTTTATCAG
*
63925309 ATAACTGGAGGC-TTAGCCTCTTTT
1 ATAACTGG-GGCATAAGCC-CTTTT
* *
63925333 AGTAATTGGGGCAAAAGCCCTTTTT
1 A-TAACTGGGGCATAAGCCC-TTTT
63925358 ATAACTGGGGCATAAGCCCTTTAT
1 ATAACTGGGGCATAAGCCCTTT-T
* *
63925382 CATAACTAGGGCATAATCCCTTTAT
1 -ATAACTGGGGCATAAGCCCTTT-T
*
63925407 CATAACTGGGGCATAAGCCCTTTA
1 -ATAACTGGGGCATAAGCCCTTTT
63925431 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63925454 GCACTTCCTC
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
23 25 0.24
24 22 0.21
25 58 0.55
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTT
Found at i:63925525 original size:9 final size:9
Alignment explanation
Indices: 63925511--63925567 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63925501 ATCTCATGTG
63925511 CATATCATA
1 CATATCATA
*
63925520 CATATCATGTG
1 CATATCA--TA
63925531 CATATCATA
1 CATATCATA
* *
63925540 CATGTCATGTG
1 CATATCA--TA
63925551 CATATCATA
1 CATATCATA
63925560 CATATCAT
1 CATATCAT
63925568 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:63925527 original size:20 final size:20
Alignment explanation
Indices: 63925499--63925569 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
63925489 GCATTTATGA
*
63925499 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
63925519 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
63925539 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
63925559 ACATATCATGT
1 ACATATCATGT
63925570 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:63925534 original size:11 final size:11
Alignment explanation
Indices: 63925504--63925558 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63925494 TATGAACATC
63925504 TCATGTGCATA
1 TCATGTGCATA
*
63925515 TCA--TACATA
1 TCATGTGCATA
63925524 TCATGTGCATA
1 TCATGTGCATA
* *
63925535 TCA--TACATG
1 TCATGTGCATA
63925544 TCATGTGCATA
1 TCATGTGCATA
63925555 TCAT
1 TCAT
63925559 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:63928069 original size:94 final size:94
Alignment explanation
Indices: 63927959--63928558 Score: 450
Period size: 94 Copynumber: 6.4 Consensus size: 94
63927949 TCACAGTTAC
* * * * * * *
63927959 ATCTTACTCCATTGCAACTTCAAGGAGATAAGATTTGTTGTTATAGTTTTACTCCAACCCACTGC
1 ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTATAATTTCAATCCAACCCACTGC
*
63928024 AACTTTAGAGG-TATAGGATTTATAGCTTT
66 AACTTCAG-GGATATAGGATTTATAGCTTT
* * * * * * ** * *
63928053 ATCTTGCTCCACTGCAATTTCAGAGAGATAAGATTTGTCATGATAACTTCATTCTGACCTATTGC
1 ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTATAATTTCAATCCAACCCACTGC
* *
63928118 AACTTCAGGGGTATAGGATTTGTAGCTTT
66 AACTTCAGGGATATAGGATTTATAGCTTT
* * * ** * * *** *
63928147 ATTTTGCTTCACTGCACCTTTTGGGAGATAGGATTT-TCTATTGTAATTTCAATCCCTGCCACTT
1 ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-TATTATAATTTCAATCCAACCCACTG
* *
63928211 CAAATTCAGGGATATAGGATTTATAGCTTC
65 CAACTTCAGGGATATAGGATTTATAGCTTT
* * * * * * * ** *
63928241 GTATTGCTCCACTGCAACTTCAGGGAGATAAAATATGCTACTGTAATTTCAATCCATTCCACTGT
1 ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTATAATTTCAATCCAACCCACTGC
* *
63928306 AACTTTAGGGATATAGGATTTGTAGCTTT
66 AACTTCAGGGATATAGGATTTATAGCTTT
* * * * * * ** *
63928335 ATCTTGCTCTACTACAACTTCAGGGAGATAAGATTCGCTACTATAATTTCAATGCATTCTACTGC
1 ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTATAATTTCAATCCAACCCACTGC
* * *
63928400 AACTTTAGGGATATAGAATTTGTAG-TTT
66 AACTTCAGGGATATAGGATTTATAGCTTT
* * * * *** * * * ***
63928428 CCTCTTTCTCCATTGCAATTTCAGGGAGATAAGATTCACTACTGTAATTTTAATCCATTTCACTG
1 -ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTATAATTTCAATCCAACCCACTG
* * * * *
63928493 TAATTTCAAGGATATAGGATTTGTAGTTTT
65 CAACTTCAGGGATATAGGATTTATAGCTTT
* * *
63928523 ATCTTGCTCTACTACAACTTTAGGGAGATAAGATTT
1 ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTT
63928559 ACCATTATAA
Statistics
Matches: 403, Mismatches: 98, Indels: 10
0.79 0.19 0.02
Matches are distributed among these distances:
93 6 0.01
94 394 0.98
95 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (94 bp):
ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTTATTATAATTTCAATCCAACCCACTGC
AACTTCAGGGATATAGGATTTATAGCTTT
Found at i:63928324 original size:188 final size:188
Alignment explanation
Indices: 63928118--63928558 Score: 537
Period size: 188 Copynumber: 2.3 Consensus size: 188
63928108 GACCTATTGC
* * * * * * *
63928118 AACTTCAGGGGTATAGGATTTGTAGCTTTATTTTGCT-TCACTGCACCTTTTGGGAGATAGGATT
1 AACTTTAGGGATATAGGATTTGTAGCTTTATCTTGCTCT-ACTACAACTTTAGGGAGATAAGATT
* * * * * * *
63928182 TTCTATTGTAATTTCAATCCCTGCCACTTCAAATTCAGGGATATAGGATTTATAGCTTCGTATTG
65 TGCTACTATAATTTCAATCCATGCCACTGCAAATTCAGGGATATAGAATTTATAGCTTCCTATTG
*
63928247 CTCCACTGCAACTTCAGGGAGATAAAATAT-GCTACTGTAATTTCAATCCATTCCACTGT
130 CTCCACTGCAACTTCAGGGAGATAAAAT-TCACTACTGTAATTTCAATCCATTCCACTGT
* *
63928306 AACTTTAGGGATATAGGATTTGTAGCTTTATCTTGCTCTACTACAACTTCAGGGAGATAAGATTC
1 AACTTTAGGGATATAGGATTTGTAGCTTTATCTTGCTCTACTACAACTTTAGGGAGATAAGATTT
* * * * * * * * *
63928371 GCTACTATAATTTCAATGCATTCTACTGCAACTTTAGGGATATAGAATTTGTAGTTTCCTCTTTC
66 GCTACTATAATTTCAATCCATGCCACTGCAAATTCAGGGATATAGAATTTATAGCTTCCTATTGC
* * * * *
63928436 TCCATTGCAATTTCAGGGAGATAAGATTCACTACTGTAATTTTAATCCATTTCACTGT
131 TCCACTGCAACTTCAGGGAGATAAAATTCACTACTGTAATTTCAATCCATTCCACTGT
* *
63928494 AA-TTTCAAGGATATAGGATTTGTAGTTTTATCTTGCTCTACTACAACTTTAGGGAGATAAGATT
1 AACTTT-AGGGATATAGGATTTGTAGCTTTATCTTGCTCTACTACAACTTTAGGGAGATAAGATT
63928558 T
65 T
63928559 ACCATTATAA
Statistics
Matches: 215, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
187 4 0.02
188 210 0.98
189 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (188 bp):
AACTTTAGGGATATAGGATTTGTAGCTTTATCTTGCTCTACTACAACTTTAGGGAGATAAGATTT
GCTACTATAATTTCAATCCATGCCACTGCAAATTCAGGGATATAGAATTTATAGCTTCCTATTGC
TCCACTGCAACTTCAGGGAGATAAAATTCACTACTGTAATTTCAATCCATTCCACTGT
Found at i:63928476 original size:282 final size:281
Alignment explanation
Indices: 63928017--63928553 Score: 595
Period size: 282 Copynumber: 1.9 Consensus size: 281
63928007 TTACTCCAAC
* *
63928017 CCACTGCAACTTTAGAGGTATAGGATTTATAGCTTTATCTTGCTCCACTGCAATTTCAGAGAGAT
1 CCACTGCAACTTTAGAGGTATAGGATTTATAGCTTTATCTTGCTCCACTACAACTTCAGAGAGAT
* * * * *
63928082 AAGATTTGTCATGATAACTTCATTCTGACCTATTGCAACTTCAGGGGTATAGGATTTGTAGCTTT
66 AAGATTCGTCATGATAACTTCATGCT-ACCTACTGCAACTTCAGGGATATAGAATTTGTAGCTTT
* * * * ** * *
63928147 ATTTTGCTTCACTGCACCTTTTGGGAGATAGGATTTTCTATTGTAATTTCAATCCCTGCCACT-T
130 ATTTTGCTCCACTGCACATTTAGGGAGATAAGATTCACTACTGTAATTTCAATCCATGCCACTGT
* * *
63928211 CAAATTCAGGGATATAGGATTTATAGCTTCGTATTGCTCCACTGCAACTTCAGGGAGATAAAATA
195 -AAATTCAAGGATATAGGATTTATAGCTTCATATTGCTCCACTACAACTTCAGGGAGATAAAATA
63928276 TGCTACTGTAATTTCAATCCATT
259 TGCTACTGTAATTTCAATCCATT
* * * *
63928299 CCACTGTAACTTTAG-GGATATAGGATTTGTAGCTTTATCTTGCTCTACTACAACTTCAGGGAGA
1 CCACTGCAACTTTAGAGG-TATAGGATTTATAGCTTTATCTTGCTCCACTACAACTTCAGAGAGA
* * *
63928363 TAAGATTCG-CTACT-ATAATTTCAATGC-ATTCTACTGCAACTTTAGGGATATAGAATTTGTAG
65 TAAGATTCGTC-A-TGATAACTTC-ATGCTA-CCTACTGCAACTTCAGGGATATAGAATTTGTAG
* * * *
63928425 -TTTCCTCTTT-CTCCATTGCA-ATTTCAGGGAGATAAGATTCACTACTGTAATTTTAATCCATT
126 CTTT-AT-TTTGCTCCACTGCACATTT-AGGGAGATAAGATTCACTACTGTAATTTCAATCCATG
* * * * * * * *
63928487 TCACTGTAATTTCAAGGATATAGGATTTGTAGTTTTATCTTGCTCTACTACAACTTTAGGGAGAT
188 CCACTGTAAATTCAAGGATATAGGATTTATAGCTTCATATTGCTCCACTACAACTTCAGGGAGAT
63928552 AA
253 AA
63928554 GATTTACCAT
Statistics
Matches: 209, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
281 10 0.05
282 191 0.91
283 8 0.04
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (281 bp):
CCACTGCAACTTTAGAGGTATAGGATTTATAGCTTTATCTTGCTCCACTACAACTTCAGAGAGAT
AAGATTCGTCATGATAACTTCATGCTACCTACTGCAACTTCAGGGATATAGAATTTGTAGCTTTA
TTTTGCTCCACTGCACATTTAGGGAGATAAGATTCACTACTGTAATTTCAATCCATGCCACTGTA
AATTCAAGGATATAGGATTTATAGCTTCATATTGCTCCACTACAACTTCAGGGAGATAAAATATG
CTACTGTAATTTCAATCCATT
Found at i:63934855 original size:15 final size:15
Alignment explanation
Indices: 63934825--63934879 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
63934815 GTATCTTGGG
63934825 TTTCTTTATT-TGGA
1 TTTCTTTATTCTGGA
63934839 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63934854 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
63934869 TTTCTTTATTC
1 TTTCTTTATTC
63934880 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
14 12 0.33
15 22 0.61
16 2 0.06
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63937326 original size:46 final size:46
Alignment explanation
Indices: 63937276--63937448 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
63937266 TGGTTGAGCA
*
63937276 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63937322 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
63937367 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63937415 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63937449 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63937432 original size:93 final size:93
Alignment explanation
Indices: 63937273--63937443 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63937263 GGATGGTTGA
* * * *
63937273 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63937338 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
63937366 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63937431 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63937444 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:63939570 original size:53 final size:53
Alignment explanation
Indices: 63939490--63939595 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
63939480 GCCATATCCA
63939490 AAATAATGAAACTAACTATACCCAAATGTTTAATTGATAGTGTGATCGTGTCT
1 AAATAATGAAACTAACTATACCCAAATGTTTAATTGATAGTGTGATCGTGTCT
63939543 AAATAATGAAACTAACTATACCCAAATGTTTAATTGATAGTGTGATCGTGTCT
1 AAATAATGAAACTAACTATACCCAAATGTTTAATTGATAGTGTGATCGTGTCT
63939596 TCGATGTCCT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (53 bp):
AAATAATGAAACTAACTATACCCAAATGTTTAATTGATAGTGTGATCGTGTCT
Done.