Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 20 of 290
Found at i:6747397 original size:255 final size:255
Alignment explanation
Indices: 6746946--6747461 Score: 987
Period size: 255 Copynumber: 2.0 Consensus size: 255
6746936 CAAGCTCAAC
6746946 ACTAATAAAGCTCTTTTGAGGCCTACATAGCATGCTACCTTAGTATTGCAATTTTTCGGTAAAAG
1 ACTAATAAAGCTCTTTTGAGGCCTACATAGCATGCTACCTTAGTATTGCAATTTTTCGGTAAAAG
*
6747011 TACCACGGAGGCCTTTGTATTAGGAGTCGGATTGCATTTTGCTCCCTCAACTCAAAAAATGAGTA
66 TACCACGAAGGCCTTTGTATTAGGAGTCGGATTGCATTTTGCTCCCTCAACTCAAAAAATGAGTA
* *
6747076 AATTAGACCCTATACGTTAGACTAAAGGGCAAAGTAGTCCTTTTGTTATAAATTCTATCCATTTA
131 AATTAGACCCTATACGTTAGACTAAAGAGCAAAGTAGTCCTTCTGTTATAAATTCTATCCATTTA
* *
6747141 TATTGTTAAAAACTGGTCCCTGTATGTCTACATAAGAGTACATGTGGCACGTCAAGTGTA
196 TATTGTTAAAAACTGGTCCCTATATGTCTACATAAGAGTACATGAGGCACGTCAAGTGTA
6747201 ACTAATAAAGCTCTTTTGAGGCCTACATAGCATGCTACCTTAGTATTGCAATTTTTCGGTAAAAG
1 ACTAATAAAGCTCTTTTGAGGCCTACATAGCATGCTACCTTAGTATTGCAATTTTTCGGTAAAAG
6747266 TACCACGAAGGCCTTTGTATTAGGAGTCGGATTGCATTTTGCTCCCTCAACTCAAAAAATGAGTA
66 TACCACGAAGGCCTTTGTATTAGGAGTCGGATTGCATTTTGCTCCCTCAACTCAAAAAATGAGTA
6747331 AATTAGACCCTATACGTTAGACTAAAGAGCAAAGTAGTCCTTCTGTTATAAATTCTATCCATTTA
131 AATTAGACCCTATACGTTAGACTAAAGAGCAAAGTAGTCCTTCTGTTATAAATTCTATCCATTTA
6747396 TATTGTTAAAAACTGGTCCCTATATGTCTACATAAGAGTACATGAGGCACGTCAAGTGTA
196 TATTGTTAAAAACTGGTCCCTATATGTCTACATAAGAGTACATGAGGCACGTCAAGTGTA
6747456 ACTAAT
1 ACTAAT
6747462 TGGTTATTTC
Statistics
Matches: 256, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
255 256 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (255 bp):
ACTAATAAAGCTCTTTTGAGGCCTACATAGCATGCTACCTTAGTATTGCAATTTTTCGGTAAAAG
TACCACGAAGGCCTTTGTATTAGGAGTCGGATTGCATTTTGCTCCCTCAACTCAAAAAATGAGTA
AATTAGACCCTATACGTTAGACTAAAGAGCAAAGTAGTCCTTCTGTTATAAATTCTATCCATTTA
TATTGTTAAAAACTGGTCCCTATATGTCTACATAAGAGTACATGAGGCACGTCAAGTGTA
Found at i:6750060 original size:21 final size:21
Alignment explanation
Indices: 6750035--6750087 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
6750025 CTCTATTTTT
* *
6750035 AATCTCACCGCTAGAATATCC
1 AATCTCACCGCTACAATAACC
* *
6750056 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
6750077 AATCTCACCGC
1 AATCTCACCGC
6750088 CACCGCTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:6757310 original size:20 final size:20
Alignment explanation
Indices: 6757282--6757344 Score: 63
Period size: 25 Copynumber: 2.9 Consensus size: 20
6757272 TTTCGGGAAC
*
6757282 CTTTCGGGAATGCAATGTTT
1 CTTTGGGGAATGCAATGTTT
6757302 CTTTGGGGAGTGCAATGCAATGTTT
1 CTTT--GG-G-G-AATGCAATGTTT
*
6757327 CTTTGGGGAGTGCAATGT
1 CTTTGGGGAATGCAATGT
6757345 GTCACTCTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
20 13 0.36
21 1 0.03
22 2 0.06
23 3 0.08
24 1 0.03
25 16 0.44
ACGTcount: A:0.19, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
CTTTGGGGAATGCAATGTTT
Found at i:6757318 original size:25 final size:25
Alignment explanation
Indices: 6757290--6757343 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
6757280 ACCTTTCGGG
6757290 AATGCAATGTTTCTTTGGGGAGTGC
1 AATGCAATGTTTCTTTGGGGAGTGC
6757315 AATGCAATGTTTCTTTGGGGAGTGC
1 AATGCAATGTTTCTTTGGGGAGTGC
6757340 AATG
1 AATG
6757344 TGTCACTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.11, G:0.31, T:0.35
Consensus pattern (25 bp):
AATGCAATGTTTCTTTGGGGAGTGC
Found at i:6758556 original size:49 final size:49
Alignment explanation
Indices: 6758497--6758594 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
6758487 TTATACATTA
*
6758497 GCATAAGGTACACCTAACATGTCATATGCCACTATCTGGTTATTCCGTC
1 GCATAAGGTACACCTAACATGTCATATGCCAATATCTGGTTATTCCGTC
6758546 GCATAAGGTACACCTAACATGTCATATGCCAATATCTGGTTATTCCGTC
1 GCATAAGGTACACCTAACATGTCATATGCCAATATCTGGTTATTCCGTC
6758595 ACTCAAAAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (49 bp):
GCATAAGGTACACCTAACATGTCATATGCCAATATCTGGTTATTCCGTC
Found at i:6761185 original size:21 final size:22
Alignment explanation
Indices: 6761159--6761216 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
6761149 ACTATGAATA
*
6761159 AAAAATAAAACAAAAATTAAAC
1 AAAATTAAAACAAAAATTAAAC
* *
6761181 TAAATTAAAA-AAAAATTATAC
1 AAAATTAAAACAAAAATTAAAC
*
6761202 AAAATTAATACAAAA
1 AAAATTAAAACAAAA
6761217 CATACGTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAATTAAAACAAAAATTAAAC
Found at i:6761205 original size:10 final size:11
Alignment explanation
Indices: 6761171--6761216 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 11
6761161 AAATAAAACA
6761171 AAAATTAA-AC
1 AAAATTAATAC
* * *
6761181 TAAATTAAAAA
1 AAAATTAATAC
6761192 AAAATT-ATAC
1 AAAATTAATAC
6761202 AAAATTAATAC
1 AAAATTAATAC
6761213 AAAA
1 AAAA
6761217 CATACGTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
10 15 0.52
11 14 0.48
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATTAATAC
Found at i:6764808 original size:30 final size:30
Alignment explanation
Indices: 6764774--6764833 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
6764764 ACTTAACAAG
*
6764774 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
*
6764804 CAAATACCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
6764834 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:6765618 original size:25 final size:24
Alignment explanation
Indices: 6765583--6765629 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
6765573 TTGTGATTCT
*
6765583 AAAGTTATTTTTATTTTTTTCAATA
1 AAAGTTATTTTT-TTATTTTCAATA
*
6765608 AAAGTTTTTTTTTTATTTTCAA
1 AAAGTTATTTTTTTATTTTCAA
6765630 CTTTTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (24 bp):
AAAGTTATTTTTTTATTTTCAATA
Found at i:6766208 original size:13 final size:15
Alignment explanation
Indices: 6766183--6766221 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
6766173 TCAATATTTT
*
6766183 AATATTTTTAATAT-
1 AATATTTTAAATATG
6766197 AA-ATTTTAAATATG
1 AATATTTTAAATATG
6766211 AATATTTTAAA
1 AATATTTTAAA
6766222 AAATATGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 10 0.45
14 4 0.18
15 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (15 bp):
AATATTTTAAATATG
Found at i:6766208 original size:22 final size:24
Alignment explanation
Indices: 6766160--6766209 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 24
6766150 AGTATATATT
*
6766160 ATATATTTTGATATCAATATTTTA
1 ATATATTTTAATATCAATATTTTA
6766184 ATAT-TTTTAATAT-AA-ATTTTA
1 ATATATTTTAATATCAATATTTTA
6766205 A-ATAT
1 ATATAT
6766210 GAATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 8 0.33
22 2 0.08
23 8 0.33
24 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
ATATATTTTAATATCAATATTTTA
Found at i:6766765 original size:38 final size:38
Alignment explanation
Indices: 6766676--6766764 Score: 115
Period size: 38 Copynumber: 2.3 Consensus size: 38
6766666 AAAAATTATA
* * * *
6766676 TTTAATACAATAAACCATTTATTATATTTATTTATGTT
1 TTTAATATAATAAAACATTTATTATATTTATATATATT
6766714 TTTAATATAATAAAACATTTATTATATTTATGATAGTATTT
1 TTTAATATAATAAAACATTTATTATATTTAT-ATA-TA-TT
6766755 TTTAATATAA
1 TTTAATATAA
6766765 ATATTTTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
38 29 0.66
39 2 0.05
40 1 0.02
41 12 0.27
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.52
Consensus pattern (38 bp):
TTTAATATAATAAAACATTTATTATATTTATATATATT
Found at i:6772654 original size:114 final size:114
Alignment explanation
Indices: 6772454--6772684 Score: 444
Period size: 114 Copynumber: 2.0 Consensus size: 114
6772444 TATAATTCTT
6772454 AATTTGCATGTTTTGTTTGTACAATTTAATATATCTAGATTTATGGGTTTGTACAATTTCTAAAG
1 AATTTGCATGTTTTGTTTGTACAATTTAATATATCTAGATTTATGGGTTTGTACAATTTCTAAAG
6772519 TTATGATAAAAAATTATATTATTTATAAGGAGGACTATGAAGTTATTAG
66 TTATGATAAAAAATTATATTATTTATAAGGAGGACTATGAAGTTATTAG
*
6772568 AATTTGCATGTTTTGTTTGTACAATTTCATATATCTAGATTTATGGGTTTGTACAATTTCTAAAG
1 AATTTGCATGTTTTGTTTGTACAATTTAATATATCTAGATTTATGGGTTTGTACAATTTCTAAAG
*
6772633 TTATGATAAAATATTATATTATTTATAAGGAGGACTATGAAGTTATTAG
66 TTATGATAAAAAATTATATTATTTATAAGGAGGACTATGAAGTTATTAG
6772682 AAT
1 AAT
6772685 AATTATAAAA
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 115 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.44
Consensus pattern (114 bp):
AATTTGCATGTTTTGTTTGTACAATTTAATATATCTAGATTTATGGGTTTGTACAATTTCTAAAG
TTATGATAAAAAATTATATTATTTATAAGGAGGACTATGAAGTTATTAG
Found at i:6773450 original size:16 final size:16
Alignment explanation
Indices: 6773429--6773471 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
6773419 TTTTAGAAAA
6773429 TTTTTAAATTTATAAT
1 TTTTTAAATTTATAAT
**
6773445 TTTTTAAAAATATAAT
1 TTTTTAAATTTATAAT
* *
6773461 TGTTGAAATTT
1 TTTTTAAATTT
6773472 TTATAAATAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (16 bp):
TTTTTAAATTTATAAT
Found at i:6779097 original size:61 final size:61
Alignment explanation
Indices: 6779022--6779154 Score: 194
Period size: 61 Copynumber: 2.2 Consensus size: 61
6779012 ATCAATCGAG
* *
6779022 ACTATTAGTAATAGAGATGTATCTATTTATCACTAGAGTAAGCTACACCCAAAGTCACTAA
1 ACTATTAGTAATAGAAATGCATCTATTTATCACTAGAGTAAGCTACACCCAAAGTCACTAA
* * * * * *
6779083 ACTATTAGTAATAGAAATGCATCTATTTATTATTAGAGTAAGCTACACTCGAGGTCATTAA
1 ACTATTAGTAATAGAAATGCATCTATTTATCACTAGAGTAAGCTACACCCAAAGTCACTAA
6779144 ACTATTAGTAA
1 ACTATTAGTAA
6779155 GTTTACATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (61 bp):
ACTATTAGTAATAGAAATGCATCTATTTATCACTAGAGTAAGCTACACCCAAAGTCACTAA
Found at i:6783860 original size:22 final size:24
Alignment explanation
Indices: 6783812--6783857 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
6783802 GTAAGGCCCC
*
6783812 TTCTCTTGCTGCTGTTCAATTTCCG
1 TTCTCTTGCTGCTGGT-AATTTCCG
6783837 TTCTCTTGCTGCTGGT-ATTTC
1 TTCTCTTGCTGCTGGTAATTTC
6783858 GTTTCCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
25 15 0.75
ACGTcount: A:0.07, C:0.26, G:0.17, T:0.50
Consensus pattern (24 bp):
TTCTCTTGCTGCTGGTAATTTCCG
Found at i:6785898 original size:20 final size:20
Alignment explanation
Indices: 6785870--6785908 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
6785860 TAATTTAAAA
6785870 TATAAAAATTTATTAATATT
1 TATAAAAATTTATTAATATT
*
6785890 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
6785909 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAAAAATTTATTAATATT
Found at i:6786031 original size:20 final size:20
Alignment explanation
Indices: 6786006--6786045 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
6785996 AAATATTTTC
*
6786006 AGTAAATCATTTTCTAGAAA
1 AGTAAATCATTTTCCAGAAA
*
6786026 AGTAAATTATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
6786046 TCATTTTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:6794065 original size:19 final size:18
Alignment explanation
Indices: 6794035--6794095 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
6794025 TTCATTTTAA
6794035 TAAAATTTATAAAAATTAT
1 TAAAA-TTATAAAAATTAT
*
6794054 TAAGAATTATAAAAATTAA
1 TAA-AATTATAAAAATTAT
*
6794073 TAAAAATATTAAAAATTA-
1 TAAAATTA-TAAAAATTAT
6794091 TAAAA
1 TAAAA
6794096 AAATTACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 9 0.24
19 27 0.71
20 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
TAAAATTATAAAAATTAT
Found at i:6794096 original size:9 final size:9
Alignment explanation
Indices: 6794034--6794179 Score: 79
Period size: 9 Copynumber: 15.8 Consensus size: 9
6794024 ATTCATTTTA
*
6794034 ATAAAATTT
1 ATAAAAATT
6794043 ATAAAAATT
1 ATAAAAATT
*
6794052 ATTAAGAATT
1 A-TAAAAATT
6794062 ATAAAAATT
1 ATAAAAATT
6794071 AATAAAAA-T
1 -ATAAAAATT
6794080 ATTAAAAATT
1 A-TAAAAATT
6794090 ATAAAAAAATT
1 AT--AAAAATT
* **
6794101 ACAAGTCATT
1 ATAA-AAATT
6794111 ATAATAATATT
1 ATAA-AA-ATT
**
6794122 -TAAATTTT
1 ATAAAAATT
6794130 ATAAAAA-T
1 ATAAAAATT
6794138 A-AGAAAATT
1 ATA-AAAATT
6794147 AT-AAAA-T
1 ATAAAAATT
*
6794154 ATTAAAAAGT
1 A-TAAAAATT
*
6794164 AGAAAAATT
1 ATAAAAATT
6794173 ATAAAAA
1 ATAAAAA
6794180 CATTATAATT
Statistics
Matches: 105, Mismatches: 17, Indels: 30
0.69 0.11 0.20
Matches are distributed among these distances:
7 3 0.03
8 14 0.13
9 49 0.47
10 28 0.27
11 11 0.10
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:6794096 original size:19 final size:19
Alignment explanation
Indices: 6794044--6794187 Score: 63
Period size: 19 Copynumber: 7.6 Consensus size: 19
6794034 ATAAAATTTA
* *
6794044 TAAAAATTATTAAGAAT-T
1 TAAAAATTATAAAAAATAT
6794062 ATAAAAATTA-ATAAAAATAT
1 -TAAAAATTATA-AAAAATAT
6794082 TAAAAATTATAAAAAA-AT
1 TAAAAATTATAAAAAATAT
* *
6794100 TACAAGTCATTAT-AATAATAT
1 TA-AA--AATTATAAAAAATAT
* *
6794121 T-TAAATTTTATAAAAATA-
1 TAAAAATTATA-AAAAATAT
6794139 -AGAAAATTAT--AAAATAT
1 TA-AAAATTATAAAAAATAT
* * *
6794156 TAAAAAGTAGAAAAATTAT
1 TAAAAATTATAAAAAATAT
*
6794175 AAAAACATTATAA
1 TAAAA-ATTATAA
6794188 TTATGCCAAC
Statistics
Matches: 93, Mismatches: 16, Indels: 31
0.66 0.11 0.22
Matches are distributed among these distances:
16 6 0.06
17 10 0.11
18 5 0.05
19 53 0.57
20 11 0.12
21 8 0.09
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAAATTATAAAAAATAT
Found at i:6794161 original size:26 final size:27
Alignment explanation
Indices: 6794123--6794187 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
6794113 AATAATATTT
*
6794123 AAATTTTATAAAAATA-AGAAAATTATA
1 AAATATTATAAAAATAGA-AAAATTATA
*
6794150 AAATATTA-AAAAGTAGAAAAATTATAA
1 AAATATTATAAAAATAGAAAAATTAT-A
*
6794177 AAACATTATAA
1 AAATATTATAA
6794188 TTATGCCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 14 0.44
27 16 0.50
28 2 0.06
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.29
Consensus pattern (27 bp):
AAATATTATAAAAATAGAAAAATTATA
Found at i:6797350 original size:3 final size:3
Alignment explanation
Indices: 6797342--6797366 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6797332 CCTAACATAC
6797342 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
6797367 GATGTGCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:6798356 original size:22 final size:23
Alignment explanation
Indices: 6798322--6798376 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 23
6798312 ATTATATTTT
*
6798322 TAAATTT-ATTTTTATATAAAAA
1 TAAATTTAAATTTTATATAAAAA
* * *
6798344 T-AATTTAAATTTTTTATTACAA
1 TAAATTTAAATTTTATATAAAAA
6798366 TAAATTTAAAT
1 TAAATTTAAAT
6798377 CTAATTTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 5 0.19
22 13 0.48
23 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TAAATTTAAATTTTATATAAAAA
Found at i:6799494 original size:21 final size:20
Alignment explanation
Indices: 6799464--6799509 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
6799454 TTCAATTTGA
*
6799464 TATTTTTTTATGTAATATTG
1 TATTTTTTTATGTAATATAG
*
6799484 TATTATTTTTATTTAATATAG
1 TATT-TTTTTATGTAATATAG
6799505 TATTT
1 TATTT
6799510 ATATTTGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (20 bp):
TATTTTTTTATGTAATATAG
Found at i:6800477 original size:15 final size:15
Alignment explanation
Indices: 6800436--6800477 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6800426 TATTTATATC
6800436 ATATTATATTTT-AA
1 ATATTATATTTTAAA
*
6800450 TTATT-TATGTTTAAA
1 ATATTATAT-TTTAAA
6800465 ATATTATATTTTA
1 ATATTATATTTTA
6800478 GTTATGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 3 0.13
14 7 0.30
15 10 0.43
16 3 0.13
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
ATATTATATTTTAAA
Found at i:6803080 original size:24 final size:25
Alignment explanation
Indices: 6803053--6803103 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
6803043 ATATAATTGC
6803053 TACATGAAGTTT-TTTTTA-AATAAA
1 TACATGAA-TTTGTTTTTATAATAAA
*
6803077 TACATTAATTTGTTTTTATAATAAA
1 TACATGAATTTGTTTTTATAATAAA
6803102 TA
1 TA
6803104 AATAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 3 0.12
24 13 0.54
25 8 0.33
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (25 bp):
TACATGAATTTGTTTTTATAATAAA
Found at i:6803925 original size:18 final size:17
Alignment explanation
Indices: 6803904--6803951 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
6803894 TTATAACATT
*
6803904 TTTATGATTTTTATAATA
1 TTTATAATTTTTA-AATA
6803922 TTTAATAATTTTTAAATA
1 TTT-ATAATTTTTAAATA
*
6803940 TTTATTATTTTT
1 TTTATAATTTTT
6803952 TGAAATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 8 0.30
18 10 0.37
19 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTATAATTTTTAAATA
Found at i:6803952 original size:19 final size:18
Alignment explanation
Indices: 6803910--6803957 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
6803900 CATTTTTATG
6803910 ATTTTTATAATATTTAATA
1 ATTTTTA-AATATTTAATA
*
6803929 ATTTTTAAATATTTATTA
1 ATTTTTAAATATTTAATA
*
6803947 TTTTTTGAAAT
1 ATTTTT-AAAT
6803958 TAAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTTAAATATTTAATA
Found at i:6809388 original size:33 final size:33
Alignment explanation
Indices: 6809346--6809408 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
6809336 AACGGTAAGT
6809346 TGATGTGGCACGTTAAAGCATCATTTCAAAAGC
1 TGATGTGGCACGTTAAAGCATCATTTCAAAAGC
6809379 TGATGTGGCACGTTAAAGCATCATTTCAAA
1 TGATGTGGCACGTTAAAGCATCATTTCAAA
6809409 CAAAAATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (33 bp):
TGATGTGGCACGTTAAAGCATCATTTCAAAAGC
Found at i:6818433 original size:27 final size:27
Alignment explanation
Indices: 6818398--6818451 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
6818388 TTTTAAAAAA
6818398 TAAAATACATGACAATTTTTAAAATTT
1 TAAAATACATGACAATTTTTAAAATTT
6818425 TAAAATACATGACAATTTTTAAAATTT
1 TAAAATACATGACAATTTTTAAAATTT
6818452 ACTCGTGGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (27 bp):
TAAAATACATGACAATTTTTAAAATTT
Found at i:6818452 original size:26 final size:26
Alignment explanation
Indices: 6818388--6818452 Score: 103
Period size: 27 Copynumber: 2.5 Consensus size: 26
6818378 AAAATAAATA
**
6818388 TTTTAAAAAATAAAATACATGACAAT
1 TTTTAAAATTTAAAATACATGACAAT
6818414 TTTTAAAATTTTAAAATACATGACAAT
1 TTTTAAAA-TTTAAAATACATGACAAT
6818441 TTTTAAAATTTA
1 TTTTAAAATTTA
6818453 CTCGTGGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 12 0.33
27 24 0.67
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (26 bp):
TTTTAAAATTTAAAATACATGACAAT
Found at i:6823035 original size:26 final size:29
Alignment explanation
Indices: 6822989--6823054 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 29
6822979 AAACATCATT
6822989 AAAA-ATAATA-AAAATACAAATT-T-TA
1 AAAATATAATATAAAATACAAATTGTATA
*
6823014 AAAATATAATATACAATA-AAATTGTATA
1 AAAATATAATATAAAATACAAATTGTATA
*
6823042 AATAATTTAATAT
1 AA-AATATAATAT
6823055 TTGTAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 4 0.12
26 11 0.32
27 6 0.18
28 4 0.12
29 9 0.26
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AAAATATAATATAAAATACAAATTGTATA
Found at i:6830708 original size:19 final size:18
Alignment explanation
Indices: 6830669--6830709 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
6830659 ACTTTGCTTA
* *
6830669 TTTGTTTAAATTTTAAGG
1 TTTGTTTAAATTTGAAAG
6830687 TTTGTTTGAAATTTGAAAG
1 TTTGTTT-AAATTTGAAAG
6830706 TTTG
1 TTTG
6830710 GACAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.54
Consensus pattern (18 bp):
TTTGTTTAAATTTGAAAG
Found at i:6833064 original size:24 final size:23
Alignment explanation
Indices: 6833032--6833080 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
6833022 ATCAAGTAGT
6833032 TCACAAAGAACCATATCGGGAAGC
1 TCACAAAGAACC-TATCGGGAAGC
* *
6833056 TCACGAAGAGCCTATCGGGAAGC
1 TCACAAAGAACCTATCGGGAAGC
6833079 TC
1 TC
6833081 TAGATAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.35, C:0.27, G:0.24, T:0.14
Consensus pattern (23 bp):
TCACAAAGAACCTATCGGGAAGC
Found at i:6834754 original size:11 final size:11
Alignment explanation
Indices: 6834738--6834765 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
6834728 ACTAAATAAT
6834738 TAATAATAAAA
1 TAATAATAAAA
6834749 TAATAATAAAA
1 TAATAATAAAA
6834760 TAATAA
1 TAATAA
6834766 AATATCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:6834792 original size:20 final size:21
Alignment explanation
Indices: 6834739--6834814 Score: 77
Period size: 19 Copynumber: 3.7 Consensus size: 21
6834729 CTAAATAATT
*
6834739 AATAATAAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
6834758 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
6834779 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
6834800 TAATCATAAAATATC
1 -AATAATAAAATATC
6834815 ATCAACATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 12 0.26
20 12 0.26
21 11 0.24
22 5 0.11
23 6 0.13
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:6837004 original size:16 final size:17
Alignment explanation
Indices: 6836973--6837005 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6836963 TTCATAAGTA
6836973 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
6836990 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
6837006 GCTTCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:6837351 original size:46 final size:46
Alignment explanation
Indices: 6837291--6837558 Score: 297
Period size: 46 Copynumber: 5.8 Consensus size: 46
6837281 TTTGACATGA
* * * *
6837291 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
* ** * *
6837337 TGCCATGGTATCTTTCAACCATGGTCCTGTTCATTTCATGTTACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * ** *
6837383 TGCCATGGTATTTTTCAACCATGGTCTTATTTA-TTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
6837428 TGCCATGGTATCTTTCAACCATAGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * *
6837474 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* *
6837520 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
6837559 TTCAGAAAGC
Statistics
Matches: 186, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
45 40 0.22
46 146 0.78
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:6837447 original size:91 final size:92
Alignment explanation
Indices: 6837291--6837545 Score: 323
Period size: 91 Copynumber: 2.8 Consensus size: 92
6837281 TTTGACATGA
* * * * *
6837291 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* *
6837356 CATGGTCCTGTTCATTTCATGTTACAT
66 CATGGTCCTATTCATTTCATGTCACAT
* * * *
6837383 TGCCATGGTATTTTTCAACCATGGTCTTATTTA-TTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* * * *
6837447 CATAGTCTTATTCTTTTCATGTCACGT
66 CATGGTCCTATTCATTTCATGTCACAT
* * * * *
6837474 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCATGTTGCCATGGTGTCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
6837539 CATGGTC
66 CATGGTC
6837546 TTACACATTT
Statistics
Matches: 137, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
91 77 0.56
92 60 0.44
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCCTATTCATTTCATGTCACAT
Found at i:6837523 original size:137 final size:137
Alignment explanation
Indices: 6837286--6837548 Score: 350
Period size: 137 Copynumber: 1.9 Consensus size: 137
6837276 TTATCTTTGA
* * * *
6837286 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTT
1 CATGATGCCATAGTATCTTTCAACCATAGTCTTACTCATTTTCTGTCACGTTGCCATGGTATCTT
*** * * *
6837351 TCAACCATGGTCCTGTTCATTTCATGTTACATTGCCATGGTATTTTTCAACCATGGTCTTATTTA
66 TCAACCATGGTCCTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTATTTA
6837416 TTCCCGT
131 TTCCCGT
* * *
6837423 CATGTTGCCATGGTATCTTTCAACCATAGTCTTATTC-TTTTCATGTCACGTTGCCATGGTATCT
1 CATGATGCCATAGTATCTTTCAACCATAGTCTTACTCATTTTC-TGTCACGTTGCCATGGTATCT
** *
6837487 TTCAACCATGGT-CTCACACATTTCATATCATGTTGCCATGGTGTCTTTCAACCATGGTCTTA
65 TTCAACCATGGTCCT-ACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTA
6837549 CACATTTCAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
136 7 0.06
137 101 0.94
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.41
Consensus pattern (137 bp):
CATGATGCCATAGTATCTTTCAACCATAGTCTTACTCATTTTCTGTCACGTTGCCATGGTATCTT
TCAACCATGGTCCTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTATTTA
TTCCCGT
Found at i:6839407 original size:24 final size:21
Alignment explanation
Indices: 6839376--6839436 Score: 74
Period size: 20 Copynumber: 2.9 Consensus size: 21
6839366 TATATTATTA
6839376 ATACATTTGTATCTATTTATAACC
1 ATACATTTGT-TC-A-TTATAACC
6839400 ATACATTTG-TCATTATAACC
1 ATACATTTGTTCATTATAACC
6839420 ATACATTTG-TCA-TATAA
1 ATACATTTGTTCATTATAA
6839437 AATCTTATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.14
20 20 0.54
21 1 0.03
22 2 0.05
24 9 0.24
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (21 bp):
ATACATTTGTTCATTATAACC
Found at i:6839417 original size:20 final size:20
Alignment explanation
Indices: 6839392--6839436 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
6839382 TTGTATCTAT
6839392 TTATAACCATACATTTGTCA
1 TTATAACCATACATTTGTCA
6839412 TTATAACCATACATTTGTCA
1 TTATAACCATACATTTGTCA
6839432 -TATAA
1 TTATAA
6839437 AATCTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (20 bp):
TTATAACCATACATTTGTCA
Found at i:6839519 original size:12 final size:12
Alignment explanation
Indices: 6839502--6839526 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6839492 CATTAATATT
6839502 TAAATACTTATA
1 TAAATACTTATA
6839514 TAAATACTTATA
1 TAAATACTTATA
6839526 T
1 T
6839527 TACAAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATACTTATA
Found at i:6843025 original size:2 final size:2
Alignment explanation
Indices: 6843018--6843044 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6843008 ATGTACTTCT
6843018 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6843045 TATCATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6843623 original size:16 final size:17
Alignment explanation
Indices: 6843580--6843617 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
6843570 TATAAAACTG
*
6843580 TAAAAAA-AAGTAAAAA
1 TAAAAAAGAAATAAAAA
6843596 TAAAAAAGAAATAAAAA
1 TAAAAAAGAAATAAAAA
6843613 -AAAAA
1 TAAAAA
6843618 CTAAATCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (17 bp):
TAAAAAAGAAATAAAAA
Found at i:6844995 original size:148 final size:148
Alignment explanation
Indices: 6844727--6845026 Score: 600
Period size: 148 Copynumber: 2.0 Consensus size: 148
6844717 TCCTAATTTT
6844727 CATTAAAACATGGAATATTCATCGCCATGCCAGCATATCAGATACCAACCCTCAGAACAATTATA
1 CATTAAAACATGGAATATTCATCGCCATGCCAGCATATCAGATACCAACCCTCAGAACAATTATA
6844792 ATATATCCTATAAATAATAACGTTAAGAACAAAGAAGATTTACATAATAAAAATCAATACTTCAA
66 ATATATCCTATAAATAATAACGTTAAGAACAAAGAAGATTTACATAATAAAAATCAATACTTCAA
6844857 TTCACAAAGAATTCTACA
131 TTCACAAAGAATTCTACA
6844875 CATTAAAACATGGAATATTCATCGCCATGCCAGCATATCAGATACCAACCCTCAGAACAATTATA
1 CATTAAAACATGGAATATTCATCGCCATGCCAGCATATCAGATACCAACCCTCAGAACAATTATA
6844940 ATATATCCTATAAATAATAACGTTAAGAACAAAGAAGATTTACATAATAAAAATCAATACTTCAA
66 ATATATCCTATAAATAATAACGTTAAGAACAAAGAAGATTTACATAATAAAAATCAATACTTCAA
6845005 TTCACAAAGAATTCTACA
131 TTCACAAAGAATTCTACA
6845023 CATT
1 CATT
6845027 GAAGCAAAGA
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
148 152 1.00
ACGTcount: A:0.46, C:0.20, G:0.08, T:0.26
Consensus pattern (148 bp):
CATTAAAACATGGAATATTCATCGCCATGCCAGCATATCAGATACCAACCCTCAGAACAATTATA
ATATATCCTATAAATAATAACGTTAAGAACAAAGAAGATTTACATAATAAAAATCAATACTTCAA
TTCACAAAGAATTCTACA
Found at i:6845850 original size:155 final size:151
Alignment explanation
Indices: 6845536--6845964 Score: 429
Period size: 155 Copynumber: 2.8 Consensus size: 151
6845526 CAGCGTCGAC
* *
6845536 TTGGTTTGGTTCAATCA-AGTCCGCTTGTATCATACAATTGTTTCATTATTACAGTTCAAGATTG
1 TTGGTTTGGTTCAATCACA-TCCGCTTGTATCAT---A-TATTTCATT-TTACAGTTCAAGATGG
* * * *
6845600 TAAAAGCTGTAACAATTCATTCATGAGGAG-AAAAGGATAAATGAAAAGAAAAAGTAAGAGATGA
60 TTAAAGCTGTAAGAATTCATTCATGAGGAGAAAAAGGATAAAGGAAAAGAAAAAGTAAGACATGA
* * * *
6845664 TACGCTTTATCCATCTTCGATGTCAAC
125 TACACTTTAACCATCTGCGATGTCAAA
* * *
6845691 TTGGTTTGGTTCAATCACATCCGCTTGTAGCGTATATTTCACTTTTACAGTTTCATGATGGTTAA
1 TTGGTTTGGTTCAATCACATCCGCTTGTATCATATATTTCA-TTTTACAG-TTCAAGATGGTTAA
*
6845756 AGCTGTAAGAATTCATTCATGAGGAGAAAAAGGATAAAGGAAAAGAACAAGGTAAGACATGATAC
64 AGCTGTAAGAATTCATTCATGAGGAGAAAAAGGATAAAGGAAAAGAA-AAAGTAAGACATGATAC
*
6845821 ACTTTAACCGTCTGCAGA-GTTCAAA
128 ACTTTAACCATCTGC-GATG-TCAAA
* * * * * * *
6845846 TTGGTTCGATTCACTCACTTCCACTTGCATTATATAATCGTTCCATTTTATACAGTTCAAGATGG
1 TTGGTTTGGTTCAATCACATCCGCTTGTATCATAT-AT--TT-CA-TTT-TACAGTTCAAGATGG
* *
6845911 TTAAAGCTGTAAG-ATCCATTCATGA-G-GACAAAGGAATAAAGGAAAAGGAAAAAG
60 TTAAAGCTGTAAGAATTCATTCATGAGGAGAAAAAGG-ATAAAGGAAAA-GAAAAAG
6845965 AAAAAGAAAA
Statistics
Matches: 231, Mismatches: 29, Indels: 26
0.81 0.10 0.09
Matches are distributed among these distances:
151 12 0.05
152 39 0.17
153 19 0.08
154 27 0.12
155 61 0.26
156 10 0.04
157 15 0.06
158 16 0.07
159 27 0.12
160 5 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (151 bp):
TTGGTTTGGTTCAATCACATCCGCTTGTATCATATATTTCATTTTACAGTTCAAGATGGTTAAAG
CTGTAAGAATTCATTCATGAGGAGAAAAAGGATAAAGGAAAAGAAAAAGTAAGACATGATACACT
TTAACCATCTGCGATGTCAAA
Found at i:6852520 original size:27 final size:26
Alignment explanation
Indices: 6852484--6852534 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
6852474 TTTAAAATAA
*
6852484 TTATAATTTAATAAA-AATTGTGATAG
1 TTATAATTTAA-AAATAATTATGATAG
6852510 TTATACATTTAAAAATAATTATGAT
1 TTATA-ATTTAAAAATAATTATGAT
6852535 TTAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (26 bp):
TTATAATTTAAAAATAATTATGATAG
Found at i:6852537 original size:44 final size:42
Alignment explanation
Indices: 6852457--6852539 Score: 121
Period size: 44 Copynumber: 1.9 Consensus size: 42
6852447 TTTAGGAGCC
*
6852457 AATTGTGACATTATAATTTTAAAATAATTATAATTTAATAAA
1 AATTGTGACATTATAATTTAAAAATAATTATAATTTAATAAA
* *
6852499 AATTGTGATAGTTATACATTTAAAAATAATTATGATTTAAT
1 AATTGTGACA-TTATA-ATTTAAAAATAATTATAATTTAAT
6852540 TTATAATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 9 0.25
43 5 0.14
44 22 0.61
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.43
Consensus pattern (42 bp):
AATTGTGACATTATAATTTAAAAATAATTATAATTTAATAAA
Found at i:6852836 original size:17 final size:17
Alignment explanation
Indices: 6852816--6852849 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6852806 TTAGAGTTAT
*
6852816 TTACTGATTAAAATTTA
1 TTACCGATTAAAATTTA
6852833 TTACCGATTAAAATTTA
1 TTACCGATTAAAATTTA
6852850 ACTTTAGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (17 bp):
TTACCGATTAAAATTTA
Found at i:6853605 original size:41 final size:41
Alignment explanation
Indices: 6853518--6853605 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
6853508 ATGTGCAATA
*
6853518 CATATAAGTAAAAGCATAGTATAGATTTTTGTACTAAGGGT
1 CATATTAGTAAAAGCATAGTATAGATTTTTGTACTAAGGGT
*
6853559 CATATTAGTAAAAGCATAGTATAGGTTTTTGTACTAAGGGT
1 CATATTAGTAAAAGCATAGTATAGATTTTTGTACTAAGGGT
6853600 CATATT
1 CATATT
6853606 GCATTTTGCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.36
Consensus pattern (41 bp):
CATATTAGTAAAAGCATAGTATAGATTTTTGTACTAAGGGT
Found at i:6854535 original size:221 final size:221
Alignment explanation
Indices: 6854152--6854595 Score: 861
Period size: 221 Copynumber: 2.0 Consensus size: 221
6854142 TAAGAGCCGG
*
6854152 ATTACATTTTGACTTCTTTATTAAAAATAGATAAATTAATCTCTCTATTAAATTAAATAATAAAT
1 ATTACATTTTGACTCCTTTATTAAAAATAGATAAATTAATCTCTCTATTAAATTAAATAATAAAT
* *
6854217 TGGTAATTCTATTAAAATAATATCATTTAATTATATTATTCAAAACTAATTAGCATATATTAACA
66 TGGTAATTCTATTAAAAGAATATCATTTAATTATATTATTCAAAACTAATCAGCATATATTAACA
6854282 TAAAATAAATGAGATACACTAAATATTACTATATTATTATTTTATTAACTATGACAATTTTTTAG
131 TAAAATAAATGAGATACACTAAATATTACTATATTATTATTTTATTAACTATGACAATTTTTTAG
6854347 ATATTTTTATAAAATTTAAATATTTA
196 ATATTTTTATAAAATTTAAATATTTA
6854373 ATTACATTTTGACTCCTTTATTAAAAATAGATAAATTAATCTCTCTATTAAATTAAATAATAAAT
1 ATTACATTTTGACTCCTTTATTAAAAATAGATAAATTAATCTCTCTATTAAATTAAATAATAAAT
6854438 TGGTAATTCTATTAAAAGAATATCATTTAATTATATTATTCAAAACTAATCAGCATATATTAACA
66 TGGTAATTCTATTAAAAGAATATCATTTAATTATATTATTCAAAACTAATCAGCATATATTAACA
6854503 TAAAATAAATGAGATACACTAAATATTACTATATTATTATTTTATTAACTATGACAATTTTTTAG
131 TAAAATAAATGAGATACACTAAATATTACTATATTATTATTTTATTAACTATGACAATTTTTTAG
6854568 ATATTTTTATAAAATTTAAATATTTA
196 ATATTTTTATAAAATTTAAATATTTA
6854594 AT
1 AT
6854596 CAAATTTTTT
Statistics
Matches: 220, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 220 1.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.43
Consensus pattern (221 bp):
ATTACATTTTGACTCCTTTATTAAAAATAGATAAATTAATCTCTCTATTAAATTAAATAATAAAT
TGGTAATTCTATTAAAAGAATATCATTTAATTATATTATTCAAAACTAATCAGCATATATTAACA
TAAAATAAATGAGATACACTAAATATTACTATATTATTATTTTATTAACTATGACAATTTTTTAG
ATATTTTTATAAAATTTAAATATTTA
Found at i:6855676 original size:29 final size:31
Alignment explanation
Indices: 6855624--6855687 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 31
6855614 AATATATAGT
6855624 AAAA-TTATATTTAATTCTTATAAAATTATA
1 AAAATTTATATTTAATTCTTATAAAATTATA
*
6855654 AAAATTTA-ATTTAATT-TTTTAAAATTATA
1 AAAATTTATATTTAATTCTTATAAAATTATA
6855683 AAAAT
1 AAAAT
6855688 ATAAACTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 17 0.53
30 12 0.38
31 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (31 bp):
AAAATTTATATTTAATTCTTATAAAATTATA
Found at i:6859342 original size:18 final size:18
Alignment explanation
Indices: 6859319--6859356 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
6859309 TTTAGAAATA
6859319 TTTTTGT-CTCAAAAGTAT
1 TTTTTGTCCTC-AAAGTAT
6859337 TTTTTGTCCTCAAAGTAT
1 TTTTTGTCCTCAAAGTAT
6859355 TT
1 TT
6859357 CTTAGAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.53
Consensus pattern (18 bp):
TTTTTGTCCTCAAAGTAT
Found at i:6859846 original size:22 final size:22
Alignment explanation
Indices: 6859821--6859887 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
6859811 TTTATGTAAA
6859821 AAGATAAAAATATTCTTGAGTT
1 AAGATAAAAATATTCTTGAGTT
* * **
6859843 AAGAT----TTATTGTTTTGTT
1 AAGATAAAAATATTCTTGAGTT
*
6859861 AAAATAAAAATATTCTTGAGTT
1 AAGATAAAAATATTCTTGAGTT
6859883 AAGAT
1 AAGAT
6859888 TTATTGTTTT
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
18 13 0.42
22 18 0.58
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (22 bp):
AAGATAAAAATATTCTTGAGTT
Found at i:6859874 original size:40 final size:40
Alignment explanation
Indices: 6859824--6859914 Score: 173
Period size: 40 Copynumber: 2.3 Consensus size: 40
6859814 ATGTAAAAAG
6859824 ATAAAAATATTCTTGAGTTAAGATTTATTGTTTTGTTAAA
1 ATAAAAATATTCTTGAGTTAAGATTTATTGTTTTGTTAAA
6859864 ATAAAAATATTCTTGAGTTAAGATTTATTGTTTTGTTAAA
1 ATAAAAATATTCTTGAGTTAAGATTTATTGTTTTGTTAAA
*
6859904 ATAAGAATATT
1 ATAAAAATATT
6859915 TTAATAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (40 bp):
ATAAAAATATTCTTGAGTTAAGATTTATTGTTTTGTTAAA
Found at i:6862142 original size:30 final size:31
Alignment explanation
Indices: 6862106--6862165 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
6862096 AACAACCTAA
*
6862106 TGACTTAATTAAAAAC-TTTGAATAGTTTAC
1 TGACTTAACTAAAAACTTTTGAATAGTTTAC
*
6862136 TGACTTAACTGAAAACTTTTGAATAGTTTA
1 TGACTTAACTAAAAACTTTTGAATAGTTTA
6862166 GTAATTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (31 bp):
TGACTTAACTAAAAACTTTTGAATAGTTTAC
Found at i:6864856 original size:60 final size:61
Alignment explanation
Indices: 6864792--6864908 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 61
6864782 AACCAAAAAA
* * * * *
6864792 CCAAGTTTAGGTACCTAACCGGACCAAAATAAA-CTTTAAATACTAAATTGAACCTTAAAG
1 CCAAGTTCAAGTACCTAACCGGACCAAAACAAATCCTTAAATACCAAATTGAACCTTAAAG
* ** * *
6864852 CCAAGTTCAAGTACTTAATTGGACCAAAACAAATCCTTAAGTACCAATTTGAACCTT
1 CCAAGTTCAAGTACCTAACCGGACCAAAACAAATCCTTAAATACCAAATTGAACCTT
6864909 GATACTAACT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
60 27 0.59
61 19 0.41
ACGTcount: A:0.41, C:0.21, G:0.11, T:0.26
Consensus pattern (61 bp):
CCAAGTTCAAGTACCTAACCGGACCAAAACAAATCCTTAAATACCAAATTGAACCTTAAAG
Found at i:6870284 original size:66 final size:66
Alignment explanation
Indices: 6870202--6870334 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
6870192 CTTATAGGAA
6870202 TGGATCATATTTTGTGACTAGCTATTTACTTATTCGGAGAACACCCACGAGGAGGGGATTAAAAA
1 TGGATCATATTTTGTGACTAGCTATTTACTTATTCGGAGAACACCCACGAGGAGGGGATTAAAAA
6870267 C
66 C
6870268 TGGATCATATTTTGTGACTAGCTATTTACTTATTCGGAGAACACCCACGAGGAGGGGATTAAAAA
1 TGGATCATATTTTGTGACTAGCTATTTACTTATTCGGAGAACACCCACGAGGAGGGGATTAAAAA
6870333 C
66 C
6870334 T
1 T
6870335 AACATCAATG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (66 bp):
TGGATCATATTTTGTGACTAGCTATTTACTTATTCGGAGAACACCCACGAGGAGGGGATTAAAAA
C
Found at i:6871238 original size:21 final size:22
Alignment explanation
Indices: 6871192--6871238 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
6871182 AATTGTTGAT
*
6871192 TAAATAACATATTATTAACAAA
1 TAAATAACATATTATTAAAAAA
6871214 -AAATAA-ATA-TATTAAAATAA
1 TAAATAACATATTATTAAAA-AA
6871234 TAAAT
1 TAAAT
6871239 TTAGACAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 7 0.32
20 5 0.23
21 10 0.45
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAATAACATATTATTAAAAAA
Found at i:6874110 original size:31 final size:29
Alignment explanation
Indices: 6874075--6874187 Score: 84
Period size: 31 Copynumber: 3.7 Consensus size: 29
6874065 TTTCTTAAAA
6874075 TTTTTGAAAATTTTAATTATACTCCTTAATT
1 TTTTTGAAAATTTTAATTA-ACT-CTTAATT
* * *
6874106 TTTTT-TAAATTCTCATTGAACTCTTAATT
1 TTTTTGAAAATTTTAATT-AACTCTTAATT
** **
6874135 TGTTTTTTAAATTTTAATTAAACATTCTTAAAG
1 T-TTTTGAAAATTTTAATT-AAC--TCTTAATT
*
6874168 TTTTTGAAAATTTTCATTAA
1 TTTTTGAAAATTTTAATTAA
6874188 TCTCAGATAC
Statistics
Matches: 66, Mismatches: 11, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
29 8 0.12
30 16 0.24
31 21 0.32
32 14 0.21
33 7 0.11
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.54
Consensus pattern (29 bp):
TTTTTGAAAATTTTAATTAACTCTTAATT
Found at i:6877271 original size:103 final size:104
Alignment explanation
Indices: 6877092--6877356 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
6877082 AACCGTTATT
* * * *
6877092 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
6877157 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
6877195 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
6877259 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
6877299 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
6877357 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:6877718 original size:30 final size:29
Alignment explanation
Indices: 6877684--6877748 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
6877674 TAATCCACCA
6877684 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
6877714 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
6877744 CCCAA
1 CCCAA
6877749 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:6877722 original size:31 final size:30
Alignment explanation
Indices: 6877691--6877748 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
6877681 CCACCCAACT
6877691 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
6877721 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
6877749 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:6884753 original size:103 final size:104
Alignment explanation
Indices: 6884574--6884838 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
6884564 AACCGTTATT
* * * *
6884574 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
6884639 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
6884677 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
6884741 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
6884781 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
6884839 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:6885200 original size:30 final size:29
Alignment explanation
Indices: 6885166--6885230 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
6885156 TAATCCACCA
6885166 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
6885196 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
6885226 CCCAA
1 CCCAA
6885231 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:6885204 original size:31 final size:30
Alignment explanation
Indices: 6885173--6885230 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
6885163 CCACCCAACT
6885173 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
6885203 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
6885231 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:6889715 original size:30 final size:32
Alignment explanation
Indices: 6889680--6889751 Score: 87
Period size: 30 Copynumber: 2.3 Consensus size: 32
6889670 ATTTTGCTTA
* *
6889680 AGACTAAAATTTTAA-AATTCAAAAAGTATAG
1 AGACTAAAATTTGAATAATTCAAAAAGAATAG
*
6889711 -GACTAAAA-TTGAATAATTCAATAAGAATAG
1 AGACTAAAATTTGAATAATTCAAAAAGAATAG
*
6889741 AGACTACAATT
1 AGACTAAAATT
6889752 GATCAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
29 4 0.12
30 22 0.65
31 7 0.21
32 1 0.03
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.28
Consensus pattern (32 bp):
AGACTAAAATTTGAATAATTCAAAAAGAATAG
Found at i:6891227 original size:2 final size:2
Alignment explanation
Indices: 6891220--6891246 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6891210 AGTAGATCAA
6891220 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
6891247 ACTTTTGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6893008 original size:10 final size:9
Alignment explanation
Indices: 6892996--6893090 Score: 79
Period size: 10 Copynumber: 10.3 Consensus size: 9
6892986 ACATGTGGAA
6892996 AAAAATTAT
1 AAAAATTAT
6893005 AAAAA--AT
1 AAAAATTAT
*
6893012 AAAAATCAAT
1 AAAAAT-TAT
6893022 AAAAATTAT
1 AAAAATTAT
*
6893031 AACAATTAT
1 AAAAATTAT
*
6893040 -TAAATTAT
1 AAAAATTAT
6893048 AATAAAATTAT
1 -A-AAAATTAT
*
6893059 AAAATTTATT
1 AAAAATTA-T
*
6893069 AAAAATTAGA
1 AAAAATTA-T
6893079 AAAAATTAT
1 AAAAATTAT
6893088 AAA
1 AAA
6893091 TTGCATAAAA
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
7 7 0.10
8 6 0.09
9 24 0.35
10 25 0.36
11 7 0.10
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:6893043 original size:19 final size:17
Alignment explanation
Indices: 6892996--6893081 Score: 66
Period size: 19 Copynumber: 4.8 Consensus size: 17
6892986 ACATGTGGAA
*
6892996 AAAAATTATAAAA-AAT
1 AAAAATTATAAAATTAT
*
6893012 AAAAATCAATAAAAATTAT
1 AAAAAT-TAT-AAAATTAT
* *
6893031 AACAATTATTAAATTAT
1 AAAAATTATAAAATTAT
6893048 AATAAAATTATAAAATTTATT
1 -A-AAAATTATAAAA-TTA-T
*
6893069 AAAAATTAGAAAA
1 AAAAATTATAAAA
6893082 AATTATAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
16 6 0.11
17 9 0.16
18 7 0.13
19 28 0.51
20 4 0.07
21 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.31
Consensus pattern (17 bp):
AAAAATTATAAAATTAT
Found at i:6893067 original size:28 final size:27
Alignment explanation
Indices: 6892995--6893090 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 27
6892985 GACATGTGGA
* * *
6892995 AAAAAATTATAAAA-AATAAAAATCA-
1 AAAAAATTATAAAATTATTAAAATTAG
*
6893020 ATAAAAATTATAACAATTATT-AAATTAT
1 A-AAAAATTATAA-AATTATTAAAATTAG
6893048 AATAAAATTATAAAATTTATTAAAAATTAG
1 AA-AAAATTATAAAA-TTATT-AAAATTAG
6893078 AAAAAATTATAAA
1 AAAAAATTATAAA
6893091 TTGCATAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
25 1 0.02
26 11 0.19
27 10 0.17
28 18 0.31
29 11 0.19
30 8 0.14
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (27 bp):
AAAAAATTATAAAATTATTAAAATTAG
Found at i:6893101 original size:29 final size:30
Alignment explanation
Indices: 6893041--6893102 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
6893031 AACAATTATT
* * *
6893041 AAATTATAATAAAATTATAAAATTTATTAA
1 AAATTAGAATAAAATTATAAAATTCATAAA
6893071 AAATTAGAA-AAAATTAT-AAATTGCATAAA
1 AAATTAGAATAAAATTATAAAATT-CATAAA
6893100 AAA
1 AAA
6893103 AAAGCTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 5 0.18
29 15 0.54
30 8 0.29
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (30 bp):
AAATTAGAATAAAATTATAAAATTCATAAA
Found at i:6893430 original size:28 final size:27
Alignment explanation
Indices: 6893393--6893461 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 27
6893383 ACGATTTTTG
* * *
6893393 TAATTTTTTTCTAATTTTAGATAAAATT
1 TAATATTTTTATATTTTTA-ATAAAATT
*
6893421 TAAATATTTTTATATTTTTATTAAAATT
1 T-AATATTTTTATATTTTTAATAAAATT
6893449 TAATATTTTTATA
1 TAATATTTTTATA
6893462 ACATTTATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
27 12 0.33
28 9 0.25
29 15 0.42
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (27 bp):
TAATATTTTTATATTTTTAATAAAATT
Found at i:6893456 original size:19 final size:19
Alignment explanation
Indices: 6893432--6893480 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
6893422 AAATATTTTT
6893432 ATATTTTTATTAAAATTTA
1 ATATTTTTATTAAAATTTA
*
6893451 ATATTTTTA-TAACATTTA
1 ATATTTTTATTAAAATTTA
*
6893469 TTAATTTTTATT
1 AT-ATTTTTATT
6893481 TTTATCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 9 0.35
19 16 0.62
20 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATATTTTTATTAAAATTTA
Found at i:6893468 original size:28 final size:28
Alignment explanation
Indices: 6893414--6893472 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
6893404 TAATTTTAGA
**
6893414 TAAAATTTAAATATTTTTATATTTTTAT
1 TAAAATTTAAATATTTTTATACATTTAT
6893442 TAAAATTT-AATATTTTTATAACATTTAT
1 TAAAATTTAAATATTTTTAT-ACATTTAT
6893470 TAA
1 TAA
6893473 TTTTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 11 0.39
28 17 0.61
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (28 bp):
TAAAATTTAAATATTTTTATACATTTAT
Found at i:6895289 original size:10 final size:10
Alignment explanation
Indices: 6895274--6895392 Score: 65
Period size: 10 Copynumber: 12.4 Consensus size: 10
6895264 TCATAACATA
6895274 TTTATAATAT
1 TTTATAATAT
*
6895284 TTTATAATAG
1 TTTATAATAT
* *
6895294 TTAATAGT-T
1 TTTATAATAT
6895303 TTTAT-ATAT
1 TTTATAATAT
*
6895312 TTT-TAAAAT
1 TTTATAATAT
*
6895321 TTTATGATAT
1 TTTATAATAT
*
6895331 TTAATAAT-T
1 TTTATAATAT
6895340 TTTATAGAT-T
1 TTTATA-ATAT
*
6895350 TTCTATCAT-T
1 TT-TATAATAT
* * *
6895360 TTCA-AAAAA
1 TTTATAATAT
6895369 TTTATAATAT
1 TTTATAATAT
6895379 TTTAATAAT-T
1 TTT-ATAATAT
6895389 TTTA
1 TTTA
6895393 GGCTAAAACT
Statistics
Matches: 81, Mismatches: 20, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
8 3 0.04
9 25 0.31
10 45 0.56
11 8 0.10
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (10 bp):
TTTATAATAT
Found at i:6895312 original size:37 final size:37
Alignment explanation
Indices: 6895271--6895350 Score: 106
Period size: 37 Copynumber: 2.2 Consensus size: 37
6895261 TTTTCATAAC
* *
6895271 ATATTTATAATATTTTATAATAGTTAATAGTTTTTAT
1 ATATTTATAAAATTTTATAATAGTTAATAATTTTTAT
* * *
6895308 ATATTTTTAAAATTTTATGATATTTAATAATTTTTAT
1 ATATTTATAAAATTTTATAATAGTTAATAATTTTTAT
*
6895345 AGATTT
1 ATATTT
6895351 TCTATCATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (37 bp):
ATATTTATAAAATTTTATAATAGTTAATAATTTTTAT
Found at i:6895323 original size:19 final size:20
Alignment explanation
Indices: 6895294--6895351 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 20
6895284 TTTATAATAG
*
6895294 TTAATAGTTTTTATATATTT
1 TTAATAATTTTTATATATTT
6895314 TTAA-AA-TTTTATGATA--T
1 TTAATAATTTTTAT-ATATTT
*
6895331 TTAATAATTTTTATAGATTT
1 TTAATAATTTTTATATATTT
6895351 T
1 T
6895352 CTATCATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
17 5 0.16
18 10 0.32
19 10 0.32
20 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.60
Consensus pattern (20 bp):
TTAATAATTTTTATATATTT
Found at i:6895504 original size:20 final size:20
Alignment explanation
Indices: 6895466--6895504 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6895456 ATTTTCATAA
* **
6895466 TTTTTATATATTTTTTAAAT
1 TTTTTATATAATTCCTAAAT
6895486 TTTTTATATAATTCCTAAA
1 TTTTTATATAATTCCTAAA
6895505 AAACAATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTTATATAATTCCTAAAT
Found at i:6895767 original size:29 final size:31
Alignment explanation
Indices: 6895701--6895780 Score: 92
Period size: 29 Copynumber: 2.6 Consensus size: 31
6895691 ACAATTTGAT
* * *
6895701 AAAGCCCAATCGATTGTCAATTTTTGAATTA
1 AAAGTCCAATTGATTGTCAATTTTTGAACTA
*
6895732 AAAGTCCAATTGATTG-CAGTTTTT-AACTA
1 AAAGTCCAATTGATTGTCAATTTTTGAACTA
* *
6895761 AGAGTCCAATTGATTTTCAA
1 AAAGTCCAATTGATTGTCAA
6895781 ATGATTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 18 0.44
30 9 0.22
31 14 0.34
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (31 bp):
AAAGTCCAATTGATTGTCAATTTTTGAACTA
Found at i:6896283 original size:12 final size:12
Alignment explanation
Indices: 6896262--6896296 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
6896252 AAAATGCTGA
*
6896262 AATCAAAATCAT
1 AATCAGAATCAT
*
6896274 CATCAGAATCAT
1 AATCAGAATCAT
6896286 AATCAGAATCA
1 AATCAGAATCA
6896297 CTTACTTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.51, C:0.20, G:0.06, T:0.23
Consensus pattern (12 bp):
AATCAGAATCAT
Found at i:6904482 original size:38 final size:40
Alignment explanation
Indices: 6904439--6904520 Score: 150
Period size: 38 Copynumber: 2.1 Consensus size: 40
6904429 TACGGTTTAT
6904439 CTTTTTTAGTCTCTCTAAATTTTTTTT-AAAATTTAATC-
1 CTTTTTTAGTCTCTCTAAATTTTTTTTCAAAATTTAATCA
6904477 CTTTTTTAGTCTCTCTAAATTTTTTTTCAAAATTTAATCA
1 CTTTTTTAGTCTCTCTAAATTTTTTTTCAAAATTTAATCA
6904517 CTTT
1 CTTT
6904521 AATTAAGATA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 27 0.64
39 11 0.26
40 4 0.10
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (40 bp):
CTTTTTTAGTCTCTCTAAATTTTTTTTCAAAATTTAATCA
Found at i:6904629 original size:21 final size:22
Alignment explanation
Indices: 6904598--6904643 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
6904588 TTGATAACTC
6904598 TTTATTTTTTTTGAATGCACGT
1 TTTATTTTTTTTGAATGCACGT
6904620 TTTATTTTTTTTGAATGCACGT
1 TTTATTTTTTTTGAATGCACGT
6904642 TT
1 TT
6904644 CCTTTCAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.09, G:0.13, T:0.61
Consensus pattern (22 bp):
TTTATTTTTTTTGAATGCACGT
Found at i:6910210 original size:18 final size:19
Alignment explanation
Indices: 6910189--6910226 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
6910179 CTTTGAAATT
6910189 CTTCATCTCT-CAATTCTA
1 CTTCATCTCTGCAATTCTA
*
6910207 CTTCATCTTTGCAATTCTA
1 CTTCATCTCTGCAATTCTA
6910226 C
1 C
6910227 AGAAAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.21, C:0.32, G:0.03, T:0.45
Consensus pattern (19 bp):
CTTCATCTCTGCAATTCTA
Found at i:6913216 original size:131 final size:130
Alignment explanation
Indices: 6912883--6913212 Score: 447
Period size: 131 Copynumber: 2.5 Consensus size: 130
6912873 AAATTCAGTC
* *
6912883 TTTAATTGAACTGAAAGAACACAAAAAGCAAATG-CTGTGCAGTTTGCCAATAGCTAAGAACAG-
1 TTTAATTGAACTGAAAGAACAC-AAAAGCAAA-GACTGT--AGTTT-CAAAGAGCTAAGAACAGC
*
6912946 TAAAATCAACAAAAGGAGCAATCAATAAGAATCAAACAGTACAAAAAAGAGTAAAAACAAACAAA
61 TAAAATCAACAAAAGGAGCAATCAATAAAAATCAAACAGTACAAAAAAGAGTAAAAACAAACAAA
6913011 CCCAT
126 CCCAT
* * *
6913016 TTAAATTTGAACTGAAAGAACACAAAAGCAAAGACTGTAATTTGCAAAGAGCTAAGAACAGC-AG
1 TTTAA-TTGAACTGAAAGAACACAAAAGCAAAGACTGTAGTTT-CAAAGAGCTAAGAACAGCTAA
* * * *
6913080 AATCAACAGAAGGGGCAATCAATAAAAATCAAACAGTACAGAAAA-AGTAAAAACAGACAAACCC
64 AATCAACAAAAGGAGCAATCAATAAAAATCAAACAGTACAAAAAAGAGTAAAAACAAACAAACCC
6913144 AT
129 AT
* *
6913146 TTTAATTGAACTGAAAGAACACGAAAGCAAAGACTGTAGTTT-AAAGAACTAAGAACAGCT-AAA
1 TTTAATTGAACTGAAAGAACACAAAAGCAAAGACTGTAGTTTCAAAGAGCTAAGAACAGCTAAAA
6913209 TCAA
66 TCAA
6913213 TCAATAAGAA
Statistics
Matches: 178, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
127 22 0.12
129 35 0.20
130 24 0.13
131 62 0.35
132 1 0.01
133 17 0.10
134 17 0.10
ACGTcount: A:0.52, C:0.16, G:0.15, T:0.17
Consensus pattern (130 bp):
TTTAATTGAACTGAAAGAACACAAAAGCAAAGACTGTAGTTTCAAAGAGCTAAGAACAGCTAAAA
TCAACAAAAGGAGCAATCAATAAAAATCAAACAGTACAAAAAAGAGTAAAAACAAACAAACCCAT
Found at i:6916842 original size:15 final size:15
Alignment explanation
Indices: 6916822--6916850 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6916812 CACATTTTTC
6916822 ATGTTTTTTTAAAAT
1 ATGTTTTTTTAAAAT
6916837 ATGTTTTTTTAAAA
1 ATGTTTTTTTAAAA
6916851 GGGTAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (15 bp):
ATGTTTTTTTAAAAT
Found at i:6918399 original size:19 final size:20
Alignment explanation
Indices: 6918363--6918402 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
6918353 GGGGGATTTT
6918363 TATTTTATTTAATATTAATA
1 TATTTTATTTAATATTAATA
6918383 TATTTATATTT-AT-TTAATA
1 TATTT-TATTTAATATTAATA
6918402 T
1 T
6918403 TAATATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTATTTAATATTAATA
Found at i:6918399 original size:25 final size:24
Alignment explanation
Indices: 6918361--6918408 Score: 87
Period size: 25 Copynumber: 2.0 Consensus size: 24
6918351 TCGGGGGATT
6918361 TTTATTTTATTTAATATTAATATA
1 TTTATTTTATTTAATATTAATATA
6918385 TTTATATTTATTTAATATTAATAT
1 TTTAT-TTTATTTAATATTAATAT
6918409 TAACATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTATTTTATTTAATATTAATATA
Found at i:6926367 original size:10 final size:11
Alignment explanation
Indices: 6926333--6926368 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
6926323 ATTTTCGTAA
6926333 TTTTTATAATG
1 TTTTTATAATG
6926344 -TTTTATAAT-
1 TTTTTATAATG
6926353 TTTTTAT-ATG
1 TTTTTATAATG
6926363 TTTTTA
1 TTTTTA
6926369 AAATTTGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 2 0.09
10 21 0.91
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (11 bp):
TTTTTATAATG
Found at i:6926367 original size:20 final size:20
Alignment explanation
Indices: 6926333--6926374 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
6926323 ATTTTCGTAA
*
6926333 TTTTTATAATGTTTTATAAT
1 TTTTTATAATGTTTTAAAAT
6926353 TTTTTAT-ATGTTTTTAAAAT
1 TTTTTATAATG-TTTTAAAAT
6926373 TT
1 TT
6926375 GTTGTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTTATAATGTTTTAAAAT
Found at i:6934175 original size:27 final size:27
Alignment explanation
Indices: 6934120--6934175 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
6934110 CATATTAATT
* * *
6934120 ATTTGAATTAATTATTATTTTTATCAA
1 ATTTGAATTAATTATGATTTATATAAA
6934147 ATTTGAATTAATTATGATATTATA-AAA
1 ATTTGAATTAATTATGAT-TTATATAAA
6934174 AT
1 AT
6934176 AGGGATCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (27 bp):
ATTTGAATTAATTATGATTTATATAAA
Found at i:6940737 original size:20 final size:20
Alignment explanation
Indices: 6940712--6940756 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6940702 CTTAGGAAAA
6940712 GTAAATCCTTAGAA-ATATTG
1 GTAAATCCTTA-AATATATTG
* *
6940732 GTAAATCGTTAAATATTTTG
1 GTAAATCCTTAAATATATTG
6940752 GTAAA
1 GTAAA
6940757 AACTTTTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (20 bp):
GTAAATCCTTAAATATATTG
Found at i:6949323 original size:26 final size:25
Alignment explanation
Indices: 6949284--6949391 Score: 126
Period size: 26 Copynumber: 4.2 Consensus size: 25
6949274 TGGTACAAAT
*
6949284 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GATTAGGTAAATGTTCCA
* * *
6949310 TAATAATGAATTAGGTAAATATTTCA
1 TGATAATG-ATTAGGTAAATGTTCCA
*
6949336 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GATTAGGTAAATGTTCCA
*
6949362 TGATAATTGTTTAGGTAAATGTTCCA
1 TGATAA-TGATTAGGTAAATGTTCCA
6949388 TGAT
1 TGAT
6949392 GGGCATTTCA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.01
26 67 0.96
27 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.38
Consensus pattern (25 bp):
TGATAATGATTAGGTAAATGTTCCA
Found at i:6949362 original size:52 final size:52
Alignment explanation
Indices: 6949284--6949391 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 52
6949274 TGGTACAAAT
*
6949284 TGATAATAGGTTAGGTAAATGTTCCATAATAA-TGAATTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATTG-ATTAGGTAAATATTCCA
* * * *
6949336 TGATAATGGGTTAGGTAAATGTTCCATGATAATTGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATTGATTAGGTAAATATTCCA
6949388 TGAT
1 TGAT
6949392 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
52 48 0.96
53 2 0.04
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.38
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATAATAATTGATTAGGTAAATATTCCA
Found at i:6950584 original size:8 final size:8
Alignment explanation
Indices: 6950571--6950601 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
6950561 ATTGGCAAAA
6950571 GCCGAAAT
1 GCCGAAAT
6950579 GCCGAAAT
1 GCCGAAAT
6950587 GCCGAAAT
1 GCCGAAAT
6950595 GCCGAAA
1 GCCGAAA
6950602 AGTCGGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.26, G:0.26, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:6951060 original size:27 final size:27
Alignment explanation
Indices: 6951020--6951133 Score: 151
Period size: 27 Copynumber: 4.2 Consensus size: 27
6951010 AGGAAGCGTC
6951020 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
6951047 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
6951074 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
6951101 CTGGTGGCTCTGCCACAA-TATCTATAT
1 CTGGTGGCTATGCCACAATTATCT-GAT
6951128 CTGGTG
1 CTGGTG
6951134 ACTTCGTCAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
26 7 0.09
27 68 0.88
28 2 0.03
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:6951102 original size:54 final size:54
Alignment explanation
Indices: 6951020--6951133 Score: 194
Period size: 54 Copynumber: 2.1 Consensus size: 54
6951010 AGGAAGCGTC
*
6951020 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACA-ATATCTATAT
*
6951074 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACAATATCTATAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCTATAT
6951128 CTGGTG
1 CTGGTG
6951134 ACTTCGTCAC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
53 7 0.12
54 50 0.88
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACAATATCTATAT
Found at i:6951508 original size:24 final size:26
Alignment explanation
Indices: 6951467--6951514 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
6951457 TTTGTTATAA
* *
6951467 AATAAAGAGAGATGATGAGAATAAAG
1 AATAAAGAGAAATGATGAAAATAAAG
6951493 AATAAAGA-AAAT-ATGAAAATAA
1 AATAAAGAGAAATGATGAAAATAA
6951515 CAGAGAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 3 0.15
26 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.17
Consensus pattern (26 bp):
AATAAAGAGAAATGATGAAAATAAAG
Found at i:6952251 original size:18 final size:19
Alignment explanation
Indices: 6952211--6952257 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
6952201 TTTCCCGAGA
* *
6952211 ATTTTAATATGCTTCTAGC
1 ATTTTAATATCCTTCAAGC
*
6952230 ATTTTAA-ATCCTTCAAGG
1 ATTTTAATATCCTTCAAGC
6952248 ATTTTAATAT
1 ATTTTAATAT
6952258 AAACTTTACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTTTAATATCCTTCAAGC
Found at i:6955671 original size:19 final size:19
Alignment explanation
Indices: 6955647--6955683 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
6955637 TTATATTTTA
6955647 TTTAAATT-TAATTTAATTT
1 TTTAAATTAT-ATTTAATTT
6955666 TTTAAATTATATTTAATT
1 TTTAAATTATATTTAATT
6955684 CAATTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTAAATTATATTTAATTT
Found at i:6962535 original size:22 final size:22
Alignment explanation
Indices: 6962509--6962552 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6962499 TAGATTGTAT
*
6962509 TTTGTTCTCTCTATTCAAATTA
1 TTTGTTCTCTCTACTCAAATTA
*
6962531 TTTGTTCTCTTTACTCAAATTA
1 TTTGTTCTCTCTACTCAAATTA
6962553 GTCCTTACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.55
Consensus pattern (22 bp):
TTTGTTCTCTCTACTCAAATTA
Found at i:6965424 original size:6 final size:6
Alignment explanation
Indices: 6965415--6965442 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6965405 TTCAGCTTCA
6965415 AGCACT AGCACT AGCACT AGCACT AGCA
1 AGCACT AGCACT AGCACT AGCACT AGCA
6965443 AAAACAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.18, T:0.14
Consensus pattern (6 bp):
AGCACT
Found at i:6972515 original size:24 final size:24
Alignment explanation
Indices: 6972488--6972537 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
6972478 AACCAACCAT
*
6972488 TAACTCCATCACCCCACTTGCCAC
1 TAACTCCATCACCCCACGTGCCAC
* *
6972512 TAACTTCATCACCCTACGTGCCAC
1 TAACTCCATCACCCCACGTGCCAC
6972536 TA
1 TA
6972538 GGGGTGTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.44, G:0.06, T:0.24
Consensus pattern (24 bp):
TAACTCCATCACCCCACGTGCCAC
Found at i:6972732 original size:18 final size:18
Alignment explanation
Indices: 6972692--6972751 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
6972682 AATAAGTATA
* * *
6972692 AAATTAATCGAATTTATC
1 AAATTAACCGAATTAACC
* * *
6972710 GAATTACCCGAATTACCC
1 AAATTAACCGAATTAACC
6972728 AAATTAACCGAATTAACC
1 AAATTAACCGAATTAACC
6972746 AAATTA
1 AAATTA
6972752 TTTGTATAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:6972744 original size:9 final size:9
Alignment explanation
Indices: 6972693--6972751 Score: 55
Period size: 9 Copynumber: 6.6 Consensus size: 9
6972683 ATAAGTATAA
*
6972693 AATTAATCG
1 AATTAACCG
* *
6972702 AATTTATCG
1 AATTAACCG
*
6972711 AATTACCCG
1 AATTAACCG
* *
6972720 AATTACCCA
1 AATTAACCG
6972729 AATTAACCG
1 AATTAACCG
*
6972738 AATTAACCA
1 AATTAACCG
6972747 AATTA
1 AATTA
6972752 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:6973310 original size:24 final size:26
Alignment explanation
Indices: 6973260--6973312 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
6973250 TTTTTGGAGA
*
6973260 AAAAAGGAGAGAGATTCAAATACAAG
1 AAAAAGGAGAGACATTCAAATACAAG
*
6973286 AAAAA-GAGAGACTTTC-AATACAAG
1 AAAAAGGAGAGACATTCAAATACAAG
6973310 AAA
1 AAA
6973313 TACACAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 9 0.36
26 5 0.20
ACGTcount: A:0.58, C:0.09, G:0.19, T:0.13
Consensus pattern (26 bp):
AAAAAGGAGAGACATTCAAATACAAG
Found at i:6974476 original size:15 final size:15
Alignment explanation
Indices: 6974456--6974485 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6974446 CTTTTTTGGC
*
6974456 CGATTTGCTTTCTGT
1 CGATTTGCTCTCTGT
6974471 CGATTTGCTCTCTGT
1 CGATTTGCTCTCTGT
6974486 TTTACCCTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.20, T:0.50
Consensus pattern (15 bp):
CGATTTGCTCTCTGT
Found at i:6976230 original size:37 final size:37
Alignment explanation
Indices: 6976180--6976258 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
6976170 TTATTACGAA
* * *
6976180 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
6976217 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
6976254 GTCTT
1 GTCTT
6976259 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:6976452 original size:49 final size:48
Alignment explanation
Indices: 6976375--6976532 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
6976365 GCCCTTCGGG
6976375 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
6976425 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
*
6976474 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
6976521 ACTTTCACATTC
1 ACTTTCACATTC
6976533 TCAAAGTAAG
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 14 0.13
49 88 0.83
50 4 0.04
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:6976829 original size:24 final size:25
Alignment explanation
Indices: 6976802--6976859 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
6976792 ATAATCAACA
6976802 TTATTATATATATATCA-TA-TCATT
1 TTATTATATAT-TATCATTATTCATT
*
6976826 TTATTAT-TATTATCATTATTTATT
1 TTATTATATATTATCATTATTCATT
*
6976850 TTATTTTATA
1 TTATTATATA
6976860 CTTTTCAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 5 0.17
23 5 0.17
24 17 0.59
25 2 0.07
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (25 bp):
TTATTATATATTATCATTATTCATT
Found at i:6979609 original size:19 final size:19
Alignment explanation
Indices: 6979585--6979621 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6979575 GCATGACCTC
6979585 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
6979604 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
6979622 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:6981663 original size:18 final size:17
Alignment explanation
Indices: 6981637--6981671 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6981627 AATATTAAGA
*
6981637 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
6981654 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
6981672 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:6981683 original size:120 final size:120
Alignment explanation
Indices: 6981530--6981813 Score: 446
Period size: 120 Copynumber: 2.4 Consensus size: 120
6981520 TAATTGAAAA
* * *
6981530 TATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAGTATTATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
* *
6981594 TTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * *
6981649 TATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGTATCATATA
1 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
*
6981714 TTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
66 TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
*
6981769 TATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
6981814 ATGATTAAAT
Statistics
Matches: 150, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
119 14 0.09
120 131 0.87
121 5 0.03
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGTATCATATA
TTATGATTTCAGAAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:6981785 original size:18 final size:17
Alignment explanation
Indices: 6981757--6981791 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6981747 ATTATTAAGA
*
6981757 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
6981774 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
6981792 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:6981791 original size:16 final size:16
Alignment explanation
Indices: 6981757--6981811 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
6981747 ATTATTAAGA
6981757 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
6981774 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
6981790 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
6981804 ATGTTTAA
1 AT-TTTAA
6981812 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:6982052 original size:16 final size:16
Alignment explanation
Indices: 6982027--6982078 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
6982017 GATTTGCTAT
*
6982027 TACACCTCTAATCCAA
1 TACACATCTAATCCAA
6982043 TACACATCTAATCCAA
1 TACACATCTAATCCAA
6982059 TACACATCTAATCCAA
1 TACACATCTAATCCAA
6982075 TACA
1 TACA
6982079 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.42, C:0.33, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACATCTAATCCAA
Found at i:6984585 original size:26 final size:24
Alignment explanation
Indices: 6984555--6984602 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
6984545 ATAAAAAAAA
*
6984555 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
6984581 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
6984603 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:6984614 original size:22 final size:21
Alignment explanation
Indices: 6984543--6984631 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 21
6984533 TTATTTCATT
* *
6984543 AAATAAAAAAAAT-TAAAAAT
1 AAATAAAAAAAATATTAAAAC
*
6984563 ATAATAAATCAAATATATTTAAAA-
1 A-AATAAA--AAAAATA-TTAAAAC
*
6984587 ACATAAAAACAAATATTAAAAC
1 AAATAAAAA-AAATATTAAAAC
* *
6984609 AAATAAAAATAATACTAAAAC
1 AAATAAAAAAAATATTAAAAC
6984630 AA
1 AA
6984632 TTCTTAAAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
20 1 0.02
21 26 0.47
22 12 0.22
23 10 0.18
24 1 0.02
25 5 0.09
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAAAAAAAATATTAAAAC
Done.