Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 200 of 290
Found at i:63944677 original size:54 final size:54
Alignment explanation
Indices: 63944608--63944713 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
63944598 TTAGCACATT
*
63944608 TTATGGATGATTTTTCCTTAAAATTGATGAATTCGATGCTCCTAATGCCATATG
1 TTATGGATGACTTTTCCTTAAAATTGATGAATTCGATGCTCCTAATGCCATATG
* *
63944662 TTATGGATTACTTTTCCTTAAAATTGGTGAATTCGATGCTCCTAATGCCATA
1 TTATGGATGACTTTTCCTTAAAATTGATGAATTCGATGCTCCTAATGCCATA
63944714 CTTTCATATT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (54 bp):
TTATGGATGACTTTTCCTTAAAATTGATGAATTCGATGCTCCTAATGCCATATG
Found at i:63950209 original size:25 final size:25
Alignment explanation
Indices: 63950179--63950285 Score: 133
Period size: 25 Copynumber: 4.3 Consensus size: 25
63950169 GAAACTCCTT
* *
63950179 CGAGCTGAATATTGGAAAGCTCATG
1 CGAGCTGAATATCGGGAAGCTCATG
* **
63950204 CGAGCTGAATAACGGGAAGCTCACA
1 CGAGCTGAATATCGGGAAGCTCATG
* * *
63950229 CAAGTTGAATATCGGGAAGCTCATT
1 CGAGCTGAATATCGGGAAGCTCATG
*
63950254 TGAGCTGAATATCGGGAAGCTCATG
1 CGAGCTGAATATCGGGAAGCTCATG
63950279 CGAGCTG
1 CGAGCTG
63950286 TGGTGTGTCC
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (25 bp):
CGAGCTGAATATCGGGAAGCTCATG
Found at i:63963314 original size:25 final size:25
Alignment explanation
Indices: 63963286--63963404 Score: 116
Period size: 25 Copynumber: 4.8 Consensus size: 25
63963276 TCCTCCGAGT
*
63963286 TGAATAACGGGAAGCTTATGTGAAC
1 TGAATAACGGGAAGCTCATGTGAAC
* * *
63963311 TGAATAATGGGAAGCTCATGGGAGC
1 TGAATAACGGGAAGCTCATGTGAAC
* * * *
63963336 TGAATATCGAGAAGCTCATGCGAGC
1 TGAATAACGGGAAGCTCATGTGAAC
*
63963361 T-ATATAACGAGAAGCTCATGTGAGA-
1 TGA-ATAACGGGAAGCTCATGTGA-AC
*
63963386 TGTATAACGGGAAGCTCAT
1 TGAATAACGGGAAGCTCAT
63963405 ACGAGCTGAA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
24 1 0.01
25 77 0.99
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (25 bp):
TGAATAACGGGAAGCTCATGTGAAC
Found at i:63970821 original size:39 final size:40
Alignment explanation
Indices: 63970649--63970890 Score: 312
Period size: 40 Copynumber: 6.1 Consensus size: 40
63970639 CGGAATTTAA
* *
63970649 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
63970689 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63970729 CCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
63970769 CCGGATTTAGTAACTCACACAAATGCCTTCGGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
63970808 CCGGATATAGTAACTTGCACAAATGCCTTCGGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
63970847 CCGGA-ACTAGTCACTAGCGCAATTGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
63970887 CCGG
1 CCGG
63970891 TTATCATCCA
Statistics
Matches: 180, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 70 0.39
40 109 0.61
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:63978907 original size:40 final size:40
Alignment explanation
Indices: 63978803--63979032 Score: 261
Period size: 40 Copynumber: 5.8 Consensus size: 40
63978793 GGATATAGCT
* * * * *
63978803 ACTCGCTCAAATGCGTTTGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
63978843 ACTAGCAACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGC-ACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
63978884 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
63978924 ACTCACACAAATGCCTTC-GGACTT-GCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
63978962 ACTTGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
63979001 ACTAGCGCAATTGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
63979033 TTATCATCCA
Statistics
Matches: 165, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
38 29 0.18
39 45 0.27
40 60 0.36
41 29 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:63978978 original size:78 final size:82
Alignment explanation
Indices: 63978792--63979032 Score: 254
Period size: 78 Copynumber: 3.0 Consensus size: 82
63978782 GGAATTTAAT
* * * * * *
63978792 CGGATATAGCT-ACTCGCTCAAATGCGTTTGGGACATAGCCCGG-TTAGAGTAACTAGCAACAAT
1 CGGATATAG-TAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTAGCAACAAA
63978855 TGCCTTCGGGACTTAGCC
65 TGCCTTCGGGACTTAGCC
* *
63978873 CGGATTTAGTAA-TTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACT--CACACAA
1 CGGATATAGTAACTT-GCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTAGCA-ACAA
63978934 ATGCCTTC-GGACTT-GCC
64 ATGCCTTCGGGACTTAGCC
* * * *
63978951 CGGATATAGTAACTTGCACAAATGCCTTCGGGACTT-GCCCGGA--ACTAGTCACTAGC-GCAAT
1 CGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATTA-GAGTAACTAGCAACAAA
63979012 TGCCTTCGGGACTTAGCC
65 TGCCTTCGGGACTTAGCC
63979030 CGG
1 CGG
63979033 TTATCATCCA
Statistics
Matches: 137, Mismatches: 12, Indels: 24
0.79 0.07 0.14
Matches are distributed among these distances:
77 24 0.18
78 41 0.30
79 17 0.12
80 13 0.09
81 40 0.29
82 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (82 bp):
CGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATTAGAGTAACTAGCAACAAAT
GCCTTCGGGACTTAGCC
Found at i:63996475 original size:31 final size:31
Alignment explanation
Indices: 63996438--63996504 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
63996428 TTAATAGCCC
* *
63996438 AATGACTTAAATTAAAACTTTTAAATAATTT
1 AATGACTTAAATGAAAACTTTCAAATAATTT
*
63996469 AATGACTTAAATGAAAACTTTCGAATAATTT
1 AATGACTTAAATGAAAACTTTCAAATAATTT
63996500 AATGA
1 AATGA
63996505 TCAAATTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (31 bp):
AATGACTTAAATGAAAACTTTCAAATAATTT
Found at i:64009586 original size:18 final size:18
Alignment explanation
Indices: 64009549--64009589 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
64009539 TCCTTCTAGA
*
64009549 ATTTTAAATCCTTAAGGG
1 ATTTTAAATCCTTAAAGG
64009567 ATTTTAAATCCTTAAAGG
1 ATTTTAAATCCTTAAAGG
64009585 ATTTT
1 ATTTT
64009590 CATATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (18 bp):
ATTTTAAATCCTTAAAGG
Found at i:64016475 original size:104 final size:104
Alignment explanation
Indices: 64016125--64016496 Score: 622
Period size: 105 Copynumber: 3.6 Consensus size: 104
64016115 TGTATATAAA
** *
64016125 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
64016190 TGAAATGTAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGT-GAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
64016230 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
64016295 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
64016335 AGGGGTTGCTAAGTGCTGATT-CCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
64016398 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
64016438 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
64016497 ATAACGGTTA
Statistics
Matches: 254, Mismatches: 9, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
103 51 0.20
104 80 0.31
105 123 0.48
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:64023875 original size:104 final size:103
Alignment explanation
Indices: 64023709--64023938 Score: 399
Period size: 104 Copynumber: 2.2 Consensus size: 103
64023699 TTGTATATAA
** *
64023709 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGTGGTGCTATGTGCGTGATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
64023774 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
64023812 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCT
64023876 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64023916 AGGGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTAAGTGCTGATTCC
64023939 ATTGTAAGTG
Statistics
Matches: 121, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
103 28 0.23
104 92 0.76
105 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:64028259 original size:27 final size:27
Alignment explanation
Indices: 64028211--64028423 Score: 224
Period size: 27 Copynumber: 7.9 Consensus size: 27
64028201 GCGAGGCTGC
* *
64028211 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
64028238 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
64028264 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
64028291 CAGATAATTGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
64028318 CAGATATATGTGGCAGAGTCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
64028345 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
64028372 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
64028399 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
64028424 GTCGCTTCCT
Statistics
Matches: 157, Mismatches: 17, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
26 11 0.07
27 139 0.89
28 7 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:64028301 original size:54 final size:54
Alignment explanation
Indices: 64028229--64028423 Score: 320
Period size: 54 Copynumber: 3.6 Consensus size: 54
64028219 GTGACGAAGT
* *
64028229 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
64028283 CACCAGATCAGATAATTGTGGCATAGCCACTAGGACAGATATATGTGGCAGAGT
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
64028337 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
64028391 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
64028424 GTCGCTTCCT
Statistics
Matches: 130, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
53 5 0.04
54 125 0.96
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:64030077 original size:26 final size:26
Alignment explanation
Indices: 64030042--64030201 Score: 266
Period size: 26 Copynumber: 6.2 Consensus size: 26
64030032 TGAAATGCCC
*
64030042 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64030068 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64030094 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
64030120 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64030146 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
64030172 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64030198 ATCA
1 ATCA
64030202 ATTTGTACCA
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 123 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64030114 original size:52 final size:52
Alignment explanation
Indices: 64030042--64030201 Score: 293
Period size: 52 Copynumber: 3.1 Consensus size: 52
64030032 TGAAATGCCC
64030042 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
64030094 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
* * *
64030146 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
64030198 ATCA
1 ATCA
64030202 ATTTGTACCA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 105 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
Found at i:64030720 original size:68 final size:67
Alignment explanation
Indices: 64030648--64030799 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 67
64030638 CATCATGTGT
* * * * *
64030648 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCG
1 ACAAGAGAGCTACGAGA-A-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
64030711 TGTAG
63 TGTAG
* * *
64030716 ACAAGAGAGCTACGAG-ATATATGTAGCTAGGTCGTATGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGAATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATG
64030780 TAG
65 TAG
64030783 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
64030800 TAAACTGGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
64 23 0.32
65 3 0.04
66 3 0.04
67 27 0.38
68 16 0.22
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGAATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGT
AG
Found at i:64034418 original size:42 final size:42
Alignment explanation
Indices: 64034339--64034419 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
64034329 TGTCGATGCC
* * * **
64034339 ACACGGGCGTGTAATCGCCTGTGTGATAGGCTGTGTGATCGA
1 ACACAGGCGTGTAACCGCCCGTGTGATAGGCCATGTGATCGA
*
64034381 ACACAGGCGTGTAGCCGCCCGTGTGATAGGCCATGTGAT
1 ACACAGGCGTGTAACCGCCCGTGTGATAGGCCATGTGAT
64034420 TTAATAAACG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.20, C:0.22, G:0.35, T:0.23
Consensus pattern (42 bp):
ACACAGGCGTGTAACCGCCCGTGTGATAGGCCATGTGATCGA
Found at i:64037166 original size:49 final size:49
Alignment explanation
Indices: 64037094--64037193 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
64037084 CATAAGCCTC
*
64037094 CACTTATATCAAAGCACATGGGTTACATACGCATGGTCAGTGACTAACT
1 CACTTATATCAAAGCACATGGGTTACATACGCATGGCCAGTGACTAACT
64037143 CACTTATATCAAAGCACATGGGTTACATACGCATGGCCAGTGACTAACT
1 CACTTATATCAAAGCACATGGGTTACATACGCATGGCCAGTGACTAACT
64037192 CA
1 CA
64037194 TGATTTAGGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (49 bp):
CACTTATATCAAAGCACATGGGTTACATACGCATGGCCAGTGACTAACT
Found at i:64046652 original size:46 final size:46
Alignment explanation
Indices: 64046528--64046694 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
64046518 TGATATGTTT
* *
64046528 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATT---ACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGATGAGA
* *
64046574 GCCAGTGTAAGACATATCTGGGACATGCATCGACATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATGAGA
* * * * *
64046620 GCTAGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAT-GA-GA
* *
64046668 ACTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
64046695 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
43 5 0.05
45 1 0.01
46 70 0.69
47 1 0.01
48 25 0.25
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATGAGA
Found at i:64047564 original size:14 final size:14
Alignment explanation
Indices: 64047545--64047577 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
64047535 CCTAACTTTA
64047545 ATAACATATTCATG
1 ATAACATATTCATG
64047559 ATAACATATTCATG
1 ATAACATATTCATG
64047573 ATAAC
1 ATAAC
64047578 TAAAGGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.33
Consensus pattern (14 bp):
ATAACATATTCATG
Found at i:64052520 original size:47 final size:47
Alignment explanation
Indices: 64052408--64052832 Score: 663
Period size: 47 Copynumber: 8.9 Consensus size: 47
64052398 TAGTATGGCG
64052408 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
64052456 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
64052503 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
64052550 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
64052599 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
64052646 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* * *
64052695 TGATAGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
64052742 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
64052789 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64052833 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 22, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
46 12 0.03
47 220 0.63
48 29 0.08
49 89 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:64052621 original size:96 final size:94
Alignment explanation
Indices: 64052408--64052832 Score: 663
Period size: 96 Copynumber: 4.5 Consensus size: 94
64052398 TAGTATGGCG
64052408 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
64052472 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
64052503 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64052568 ATGTGAAAGTGTATATATATGTGATAGGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
64052599 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
64052664 ATGTGAAAGTGTATATATATGTGATAAGGCT
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
* * *
64052695 TGATAGCCGATGTGATGAATGTGAAAGTGTATATATGCGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
64052760 ATGTGAAAGTGTATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
64052789 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64052833 TCCCGAAGGG
Statistics
Matches: 307, Mismatches: 20, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
93 12 0.04
94 83 0.27
95 29 0.09
96 183 0.60
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:64052670 original size:143 final size:142
Alignment explanation
Indices: 64052408--64052832 Score: 692
Period size: 143 Copynumber: 3.0 Consensus size: 142
64052398 TAGTATGGCG
*
64052408 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGATGTGATG
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGATGTGATG
64052473 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
66 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64052538 TGTGATAAGGCC
131 TGTGATAAGGCC
64052550 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA-GGCCTAATGGCCGATGTGAT
64052615 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
64052680 ATATGTGATAAGGCT
128 ATATGTGATAAGGCC
* *
64052695 TGATAGCCGATGTGATGAATGTGAAAGTG--TATATATGCGATAAGGCCTAATGGCCGATGTGAT
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGAT
* * * * * * * *
64052758 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
65 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64052823 ATGTGATAAG
130 ATGTGATAAG
64052833 TCCCGAAGGG
Statistics
Matches: 267, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
141 14 0.05
142 43 0.16
143 164 0.61
144 1 0.00
145 45 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (142 bp):
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCC
Found at i:64053007 original size:37 final size:37
Alignment explanation
Indices: 64052951--64053029 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
64052941 CCAAGCTCTA
* *
64052951 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
64052988 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64053025 AAGAC
1 AAGAC
64053030 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64057920 original size:40 final size:40
Alignment explanation
Indices: 64057865--64058167 Score: 439
Period size: 40 Copynumber: 7.6 Consensus size: 40
64057855 TACTCGGATG
*
64057865 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
64057905 ATATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
64057945 ATATCCGAGCTAAGTCTCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
64057985 ATATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
64058025 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
64058065 ATATCCAGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
64058105 GTATCCGGGCTAAGACCCGAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCG-AAGGCATTTGTGCTAG-TGACT
*
64058146 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
64058168 TACTTGGGTT
Statistics
Matches: 234, Mismatches: 27, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
39 4 0.02
40 206 0.88
41 22 0.09
42 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:64060490 original size:26 final size:25
Alignment explanation
Indices: 64060447--64060509 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
64060437 ATAGAACCTA
64060447 AAATTAAAATAATATTAAAGGAAAAT
1 AAATTAAAATAATATTAAA-GAAAAT
* *
64060473 AAATTAAAA-AGTACTTAAAGAACAT
1 AAATTAAAATAATA-TTAAAGAAAAT
64060498 AAA-TAAAGATAA
1 AAATTAAA-ATAA
64060510 AAGTGGAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 4 0.13
25 12 0.39
26 15 0.48
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.24
Consensus pattern (25 bp):
AAATTAAAATAATATTAAAGAAAAT
Found at i:64069096 original size:39 final size:40
Alignment explanation
Indices: 64069019--64069165 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
64069009 TAGCTCCTCG
* * *
64069019 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
64069059 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
64069098 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
64069138 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
64069166 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:64069176 original size:80 final size:80
Alignment explanation
Indices: 64069065--64069245 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
64069055 CTCATTCAAT
* * *
64069065 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
64069128 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
64069144 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
64069208 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
64069225 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
64069246 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:64069205 original size:40 final size:40
Alignment explanation
Indices: 64069062--64069245 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
64069052 TAACTCATTC
* *
64069062 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
64069102 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
64069142 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
64069182 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
64069223 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64069246 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:64076935 original size:39 final size:40
Alignment explanation
Indices: 64076858--64077004 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
64076848 TAGCTCCTCG
* * *
64076858 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
64076898 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
64076937 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
64076977 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
64077005 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:64077015 original size:80 final size:80
Alignment explanation
Indices: 64076904--64077084 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
64076894 CTCATTCAAT
* * *
64076904 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
64076967 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
64076983 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
64077047 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
64077064 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
64077085 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:64077044 original size:40 final size:40
Alignment explanation
Indices: 64076901--64077084 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
64076891 TAACTCATTC
* *
64076901 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
64076941 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
64076981 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
64077021 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
64077062 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
64077085 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:64097613 original size:37 final size:37
Alignment explanation
Indices: 64097554--64097625 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
64097544 AGCTCAGACG
*
64097554 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
64097591 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
64097626 ATACATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:64097798 original size:47 final size:47
Alignment explanation
Indices: 64097719--64097912 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
64097709 CATACATATT
* * *
64097719 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
64097766 GCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
64097813 TCACGTTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
64097860 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64097907 TCACAT
1 TCACAT
64097913 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:64101643 original size:24 final size:26
Alignment explanation
Indices: 64101578--64101645 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 26
64101568 GACTCATCGT
64101578 AGCTCGTATGAGCTTACTGATATATC
1 AGCTCGTATGAGCTTACTGATATATC
* * * * *
64101604 ATCTTGTAAGAGCTTA-TTAT-TCTC
1 AGCTCGTATGAGCTTACTGATATATC
64101628 AGCTCGTATGAGCTTACT
1 AGCTCGTATGAGCTTACT
64101646 AATTCAACTT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 16 0.48
25 4 0.12
26 13 0.39
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (26 bp):
AGCTCGTATGAGCTTACTGATATATC
Found at i:64107171 original size:46 final size:45
Alignment explanation
Indices: 64107113--64107231 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 45
64107103 ATGCCGACGC
64107113 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAA-T-GCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCA--T-AAGTGGCCAATG
***
64107159 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCCAATG
64107205 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
64107232 ACACATATCA
Statistics
Matches: 67, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 63 0.94
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCCAATG
Found at i:64110869 original size:10 final size:10
Alignment explanation
Indices: 64110843--64110872 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
64110833 CGTGAATCTG
*
64110843 TCAAAAATAA
1 TCAAAATTAA
64110853 TCAAAATTAA
1 TCAAAATTAA
64110863 TCAAAATTAA
1 TCAAAATTAA
64110873 GTATAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:64114091 original size:93 final size:93
Alignment explanation
Indices: 64113983--64114153 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
64113973 CGCCCATAAG
* * **
64113983 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACCAGCTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCA
* *
64114048 AGGAGTTTGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
64114076 CGAACTCGGACTCAACTCAACCAGTTCGGACGTTCACATCCATAAGTGAACTCTGACTCAATTCA
1 CGAACTCGGACTCAACTCAACCAGCTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCA
64114141 ACGAGTTCGGATG
66 ACGAGTTCGGATG
64114154 TTCGCATCCA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACCAGCTCGGACGTTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:64114197 original size:46 final size:46
Alignment explanation
Indices: 64113976--64114189 Score: 216
Period size: 46 Copynumber: 4.6 Consensus size: 46
64113966 TGTAACCCGC
* * * *
64113976 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * * *
64114022 CCATAAGTGAACTCAGACTCAACTCAAGGAGTTTGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * * *
64114068 ACATTTCA-CGAACTCGGACTCAACTCAACCAGTTCGGACGTTCACAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
64114115 CCATAAGTGAACTCTGACTCAATTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
64114161 CCATAAGTGAACTCGGACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
64114190 TGCTCGGAAC
Statistics
Matches: 131, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
45 2 0.02
46 96 0.73
47 31 0.24
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:64119431 original size:68 final size:66
Alignment explanation
Indices: 64119358--64119543 Score: 171
Period size: 67 Copynumber: 2.8 Consensus size: 66
64119348 CATCATGTGT
* * * *
64119358 ACAAGAGTGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCA
64119421 TGTAG
62 TGTAG
** * *
64119426 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACTA-GTGAAGGACACCATGT
64119491 AG
65 AG
* * * * * *
64119493 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACT-AGTG
64119544 TTCACCATGT
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
64 25 0.25
65 3 0.03
66 27 0.27
67 33 0.33
68 12 0.12
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.24
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACTAGTGAAGGACACCATGTA
G
Found at i:64119462 original size:64 final size:64
Alignment explanation
Indices: 64119382--64119553 Score: 204
Period size: 67 Copynumber: 2.7 Consensus size: 64
64119372 AGACATTATG
* * *
64119382 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
64119446 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64119511 AA
63 AA
* * *
64119513 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGT
64119554 GTACGAGCCA
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
63 9 0.10
64 26 0.29
66 22 0.24
67 33 0.37
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64125177 original size:46 final size:46
Alignment explanation
Indices: 64125110--64125324 Score: 236
Period size: 46 Copynumber: 4.7 Consensus size: 46
64125100 TGTAACCCGC
* *
64125110 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGACGTTCGCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAA
* * * * **
64125156 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAA
* * * * * *
64125203 -CATTTCA-CGAACTCAGACTCAACTCAACGAGTTTGGACGTCCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAA
* * *
64125249 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAA
64125295 CCATAAGTGAACTCGGACTCAACTCAACGA
1 CCATAAGTGAACTCGGACTCAACTCAACGA
64125325 ACTCAGAACT
Statistics
Matches: 139, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.01
46 101 0.73
47 34 0.24
48 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAA
Found at i:64125230 original size:93 final size:93
Alignment explanation
Indices: 64125118--64125287 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
64125108 GCCCATAAGT
* *
64125118 GAACTCGGACTCAAATCAACGAGCTCGGACGTTCGCAACCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAAATCAACGAGCTCGGACGTCCGCAACCATAAGTGAACTCAGACTCAACTCAA
64125183 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
64125211 GAACTCAGACTCAACTCAACGAGTTTGGACGTCCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAAATCAACGAGCTCGGACGTCCGCAACCATAAGTGAACTCAGACTCAACTCAA
64125276 CGAGTTCGGATG
66 CGAGTTCGGATG
64125288 TTCGTATCCA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAAATCAACGAGCTCGGACGTCCGCAACCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:64125343 original size:93 final size:91
Alignment explanation
Indices: 64125110--64125328 Score: 253
Period size: 93 Copynumber: 2.4 Consensus size: 91
64125100 TGTAACCCGC
* * * *
64125110 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGACGTTCGCAACCATAAGTGAACTCAGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGACG-TCCCATCCATAAGTGAACTCAGACT
64125175 CAACTCAACGAGTTCGGATGCCTAGTT
65 CAACTCAACGAGTTCGGATGCCTAGTT
* * * * ** * *
64125202 ACATTTCA-CGAACTCAGACTCAACTCAACGAGTTTGGACGTCCGCATCCATAAGTGAACTCGGA
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAACTCGGACGTCC-CATCCATAAGTGAACTCAGA
* *
64125266 CTCAACTCAACGAGTTCGGATG-TTCGTAT
63 CTCAACTCAACGAGTTCGGATGCCTAGT-T
64125295 CCATAAGTGAACTCGGACTCAACTCAACGAACTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAACTC
64125329 AGAACTCAAC
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
91 2 0.02
92 29 0.28
93 70 0.68
94 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (91 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGACGTCCCATCCATAAGTGAACTCAGACTC
AACTCAACGAGTTCGGATGCCTAGTT
Found at i:64134797 original size:55 final size:55
Alignment explanation
Indices: 64134671--64134781 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
64134661 CGAGCTTGCC
* * * * * *
64134671 AAAACAACACGGGCGGGCGACACGCCCGTGTGGAAGACCCGTGGTTGAACCTGTT
1 AAAACAGCACGGGCGTGCGACACGCCCATGTCGAACACCCGTGGTCGAACCTGTT
* *
64134726 AAAACAGCACGGGCGTGTGACACGCCCATGTCTAACACCCGTGGTCGAACCTGTT
1 AAAACAGCACGGGCGTGCGACACGCCCATGTCGAACACCCGTGGTCGAACCTGTT
64134781 A
1 A
64134782 GATTGCTACG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.16
Consensus pattern (55 bp):
AAAACAGCACGGGCGTGCGACACGCCCATGTCGAACACCCGTGGTCGAACCTGTT
Found at i:64135295 original size:27 final size:27
Alignment explanation
Indices: 64135245--64135296 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
64135235 TTATTAGGTT
* *
64135245 AGTTATCATACATTTCGTGCTAAATCA
1 AGTTATCATACATTCCATGCTAAATCA
* *
64135272 AGTTATCATATATTCCATGTTAAAT
1 AGTTATCATACATTCCATGCTAAAT
64135297 TGAGATTAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (27 bp):
AGTTATCATACATTCCATGCTAAATCA
Found at i:64138207 original size:28 final size:27
Alignment explanation
Indices: 64138150--64138301 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
64138140 TAAATTGTGC
*
64138150 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
64138177 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
64138205 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
64138232 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
64138260 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
64138287 AGCAATGAGTGTGCG
1 AGCACTAAGTGTGCG
64138302 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 65 0.55
28 53 0.45
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:64138214 original size:55 final size:55
Alignment explanation
Indices: 64138150--64138301 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
64138140 TAAATTGTGC
*
64138150 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
64138205 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
64138260 AGCACTAAGTGTGCGAGTTGATTATATAGCAATGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
64138302 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:64146266 original size:28 final size:27
Alignment explanation
Indices: 64146211--64146294 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
64146201 AGCATGGCTG
** *
64146211 CCAGAACAGATA-TTGTGATAGAGTCA
1 CCAGAACAGATATTTGTGCCAGAGCCA
* *
64146237 CCAGATACAGATATTTGTGGCAGTGCCA
1 CCAGA-ACAGATATTTGTGCCAGAGCCA
64146265 CCAGAACAGATATTTGTGCCAGAGCCA
1 CCAGAACAGATATTTGTGCCAGAGCCA
64146292 CCA
1 CCA
64146295 AAACGCTTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.10
27 30 0.60
28 15 0.30
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGCCAGAGCCA
Found at i:64155464 original size:29 final size:29
Alignment explanation
Indices: 64155429--64155502 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
64155419 GTTGTGAGAT
* *
64155429 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
64155458 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
64155487 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64155503 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:64553354 original size:30 final size:28
Alignment explanation
Indices: 64553276--64553430 Score: 206
Period size: 28 Copynumber: 5.5 Consensus size: 28
64553266 ATATTAAGTC
*
64553276 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64553303 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64553331 TGCACACTTAGTGTGCTATATAATCAAACT
1 CGCACACTTA--GTGCTATATAATCAAACT
64553361 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
64553389 CGCACACTTAGTGCTGTACAATTTAAAC-
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
64553417 CCCACACTTAGTGC
1 CGCACACTTAGTGC
64553431 CAATCTCATG
Statistics
Matches: 115, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
27 21 0.18
28 63 0.55
29 5 0.04
30 26 0.23
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64553371 original size:58 final size:57
Alignment explanation
Indices: 64553286--64553401 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 57
64553276 CGCACACTCA
*
64553286 GTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTTGCACACTTAGT
1 GTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGT
*
64553343 GTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGT
1 GTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGT
64553401 G
1 G
64553402 CTGTACAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
57 13 0.23
58 43 0.77
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (57 bp):
GTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGT
Found at i:64561447 original size:28 final size:28
Alignment explanation
Indices: 64561385--64561538 Score: 211
Period size: 28 Copynumber: 5.5 Consensus size: 28
64561375 ATATTAAGTC
* *
64561385 CGCACACTCAGTGCTATATAA-CCAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64561412 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
64561440 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
64561468 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
64561496 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
64561525 CGTACACTTAGTGC
1 CGCACACTTAGTGC
64561539 CAATCTCATG
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 19 0.17
28 77 0.68
29 18 0.16
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64563855 original size:14 final size:14
Alignment explanation
Indices: 64563836--64563862 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64563826 TATTTCAAAT
64563836 CATTCCAAAAACAA
1 CATTCCAAAAACAA
64563850 CATTCCAAAAACA
1 CATTCCAAAAACA
64563863 TTTTTTTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.30, G:0.00, T:0.15
Consensus pattern (14 bp):
CATTCCAAAAACAA
Found at i:64564644 original size:59 final size:59
Alignment explanation
Indices: 64564543--64564684 Score: 203
Period size: 59 Copynumber: 2.4 Consensus size: 59
64564533 TAATGCAACC
* * * *
64564543 CAACCCAAACCAGCCAACACACTACTTCGTACCAACCAACACACCATGTGGGGACAAAGT
1 CAACCC-ACCCAGCCAACACACCACTCCATACCAACCAACACACCATGTGGGGACAAAGT
*
64564603 CGACCCACCCAGCCAACACACCACTCCATACCAACCAACACACCATGTGGGGACAAAGT
1 CAACCCACCCAGCCAACACACCACTCCATACCAACCAACACACCATGTGGGGACAAAGT
* * *
64564662 TAACCCACTCAGCAAACACACCA
1 CAACCCACCCAGCCAACACACCA
64564685 ATATCGCAGC
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 68 0.93
60 5 0.07
ACGTcount: A:0.38, C:0.40, G:0.12, T:0.10
Consensus pattern (59 bp):
CAACCCACCCAGCCAACACACCACTCCATACCAACCAACACACCATGTGGGGACAAAGT
Found at i:64565077 original size:27 final size:27
Alignment explanation
Indices: 64565046--64565109 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
64565036 AAGGCCCATT
* *
64565046 TTGTGGGCCAAGTGGGCCCACACGCCC
1 TTGTGGCCCAAGTGGGCCCACACACCC
64565073 TTGTGGCCCAAGTGGGCCCACACACCC
1 TTGTGGCCCAAGTGGGCCCACACACCC
*
64565100 TTATGGCCCA
1 TTGTGGCCCA
64565110 TAAATCCCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.17, C:0.38, G:0.28, T:0.17
Consensus pattern (27 bp):
TTGTGGCCCAAGTGGGCCCACACACCC
Found at i:64572159 original size:376 final size:378
Alignment explanation
Indices: 64571566--64572286 Score: 1338
Period size: 376 Copynumber: 1.9 Consensus size: 378
64571556 CGAATATAGA
* *
64571566 GAAAAGAAATAAGGTTTGAAGCTTGGTGAATTTCGGCACCTTTAAATCTTGATTTAGGTATGTTC
1 GAAAAGAAATAAGGTTCGAAGCTTGGTGAATTTCGACACCTTTAAATCTTGATTTAGGTATGTTC
**
64571631 TTTGCTCGACTTTTGATAATTTTTATGTTTTTTGAGATTGTTACTTCGTATTCTAGCTAGCCCAT
66 TTTGCTCGACTTTTGATAATTTTTATGTTTTTTGAGATCATTACTTCGTATTCTAGCTAGCCCAT
* *
64571696 GCCCTAATTTTTAGAATTTATGATAAATTTGTGATTTTCCATTGATGATAGCTTGATGTTTTTGT
131 GCCCTAATTTTTAGAATTTATGATAAATTTGTAATTTTCCATTGATGATAGCTTCATGTTTTTGT
*
64571761 TGTTTGATGATGAAAAATAAATATTTTTTGATAGATTATTATGTTTAATTAAGTGATTTTTGATA
196 TGTTTGATGATGAAAAATAAATATTTGTTGATAGATTATTATGTTTAATTAAGTGATTTTTGATA
64571826 AAAATGCTTATTAAGGATT-AATTGTGAAATTTGCAAATTTAGGGGTCAAAATGTGAAATAAATG
261 AAAATGCTTATTAAGGATTAAATTGTGAAATTTGCAAATTTAGGGGTCAAAATGTGAAATAAATG
64571890 AAATTAATGGGATGTTAGGGTTTGAAGCTTAAAATAAGGTTTGAAATAAGCTT
326 AAATTAATGGGATGTTAGGGTTTGAAGCTTAAAATAAGGTTTGAAATAAGCTT
64571943 GAAAAGAAATAAGGTTCGAAGCTTGGTGAATTTCGACACCTTTAAATCTTGATTTAGGTATGTTC
1 GAAAAGAAATAAGGTTCGAAGCTTGGTGAATTTCGACACCTTTAAATCTTGATTTAGGTATGTTC
*
64572008 TTTGCTCGACTTTTGATAATTTTTATG-TTTTTGAGATCATTGCTTCGTATTCTAGCTAGCCCAT
66 TTTGCTCGACTTTTGATAATTTTTATGTTTTTTGAGATCATTACTTCGTATTCTAGCTAGCCCAT
* *
64572072 GCCCTAATTTTTAGAATTTATGATGAATTTGTAATTTTTCATTGATGATAGCTTCATGTTTTTGT
131 GCCCTAATTTTTAGAATTTATGATAAATTTGTAATTTTCCATTGATGATAGCTTCATGTTTTTGT
64572137 TGTTTGATGATGAAAAATAAATATTTGTTGATAGATTATTATGTTTAATTAAGTGATTTTTGATA
196 TGTTTGATGATGAAAAATAAATATTTGTTGATAGATTATTATGTTTAATTAAGTGATTTTTGATA
64572202 AAAATGCTTATTAAGGATTAAATTGTGAAATTTGCAAATTTAGGGGTCAAAATGTGAAATAAATG
261 AAAATGCTTATTAAGGATTAAATTGTGAAATTTGCAAATTTAGGGGTCAAAATGTGAAATAAATG
64572267 AAATTAATGGGATGTTAGGG
326 AAATTAATGGGATGTTAGGG
64572287 ACTTAAGGAA
Statistics
Matches: 333, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
376 178 0.53
377 155 0.47
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (378 bp):
GAAAAGAAATAAGGTTCGAAGCTTGGTGAATTTCGACACCTTTAAATCTTGATTTAGGTATGTTC
TTTGCTCGACTTTTGATAATTTTTATGTTTTTTGAGATCATTACTTCGTATTCTAGCTAGCCCAT
GCCCTAATTTTTAGAATTTATGATAAATTTGTAATTTTCCATTGATGATAGCTTCATGTTTTTGT
TGTTTGATGATGAAAAATAAATATTTGTTGATAGATTATTATGTTTAATTAAGTGATTTTTGATA
AAAATGCTTATTAAGGATTAAATTGTGAAATTTGCAAATTTAGGGGTCAAAATGTGAAATAAATG
AAATTAATGGGATGTTAGGGTTTGAAGCTTAAAATAAGGTTTGAAATAAGCTT
Found at i:64572995 original size:43 final size:43
Alignment explanation
Indices: 64572933--64573150 Score: 244
Period size: 43 Copynumber: 5.1 Consensus size: 43
64572923 TGTATATAGA
* * *
64572933 CATCGATATGTGATTACGTGTAAGACCATGCCTGGGACGTTGG
1 CATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
* * *
64572976 TATCGATATGTGATTACGTGTAAGACCACATCTGGGACGTTGG
1 CATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
64573019 CATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
* * * * * *
64573062 CATCTATATGTGTTTACAAGTAAGACC-CTATCTAGGATAG-TGG
1 CATCGATATGTGATTACATGTAAGACCAC-GTCTGGGA-CGTTGG
** * *
64573105 CATCGATATAAGATTACATGTAAGTCCACGT-TAGGAACGTTGG
1 CATCGATATGTGATTACATGTAAGACCACGTCT-GGGACGTTGG
64573148 CAT
1 CAT
64573151 TATACCATAT
Statistics
Matches: 147, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
42 3 0.02
43 142 0.97
44 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
CATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
Found at i:64578069 original size:16 final size:16
Alignment explanation
Indices: 64578050--64578081 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64578040 AATTGTTTTA
64578050 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
64578066 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
64578082 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:64578367 original size:50 final size:50
Alignment explanation
Indices: 64578292--64578556 Score: 325
Period size: 50 Copynumber: 5.3 Consensus size: 50
64578282 CCGGTAGGCA
* *
64578292 TAGTAGCCTGAACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * * *
64578342 TAGTAGCCTGCACTTATTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* ** * * ** *
64578392 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAAT-GGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
* *
64578443 TAGTAGCCTGCACTTAGTACTACACATGTAACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* *
64578493 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
64578543 TAGTAGCCTGCACT
1 TAGTAGCCTGCACT
64578557 AAGTGTAAGA
Statistics
Matches: 178, Mismatches: 34, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
49 4 0.02
50 137 0.77
51 35 0.20
52 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:64580525 original size:18 final size:20
Alignment explanation
Indices: 64580494--64580540 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
64580484 AAAAACATGT
*
64580494 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
64580515 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
64580534 TATATAT
1 TATATAT
64580541 ACTTATAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:64583079 original size:15 final size:16
Alignment explanation
Indices: 64583059--64583099 Score: 68
Period size: 15 Copynumber: 2.7 Consensus size: 16
64583049 AACCAAGATC
64583059 TCCAAGATAGA-GAAA
1 TCCAAGATAGAGGAAA
64583074 TCCAAGATA-AGGAAA
1 TCCAAGATAGAGGAAA
64583089 TCCAAGATAGA
1 TCCAAGATAGA
64583100 ATATCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.51, C:0.15, G:0.20, T:0.15
Consensus pattern (16 bp):
TCCAAGATAGAGGAAA
Found at i:64586632 original size:50 final size:49
Alignment explanation
Indices: 64586573--64586757 Score: 201
Period size: 50 Copynumber: 3.7 Consensus size: 49
64586563 CGAAGCTCTT
* *
64586573 TGGTACACATAGTAACCTGTACTTAGTACATCACATACGACCTATCAATC
1 TGGTACACATAGTAGCCTGCACTTAGTAC-TCACATACGACCTATCAATC
* * * *
64586623 TGGTACACATAGTAGCCTGCACTTAGTACT-ACACACGTGACTTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTCACATAC--GACCTATCAATC
* * * * *
64586673 TGATAGACGTAGTAGCCTGAACTTAGTACTACACATGCGACCTATCAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACT-CACATACGACCTATCAATC
* *
64586723 TGGTACACGTAGTAGCTTGCACTTAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACT-CACA
64586758 CGTGACTCAC
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
48 5 0.04
49 1 0.01
50 102 0.91
52 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTCACATACGACCTATCAATC
Found at i:64586714 original size:100 final size:100
Alignment explanation
Indices: 64586582--64586764 Score: 305
Period size: 100 Copynumber: 1.8 Consensus size: 100
64586572 TTGGTACACA
*
64586582 TAGTAACCTGTACTTAGTACATCACATACGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAACCTGAACTTAGTACATCACATACGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
64586647 AGTACTACACACGTGACTTAACCATCTGATAGACG
66 AGTACTACACACGTGACTTAACCATCTGATAGACG
* * * *
64586682 TAGTAGCCTGAACTTAGTAC-TACACATGCGACCTATCAATCTGGTACACGTAGTAGCTTGCACT
1 TAGTAACCTGAACTTAGTACAT-CACATACGACCTATCAATCTGGTACACATAGTAGCCTGCACT
64586746 TAGTACTACACACGTGACT
65 TAGTACTACACACGTGACT
64586765 CACAACGGAT
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 1 0.01
100 76 0.99
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (100 bp):
TAGTAACCTGAACTTAGTACATCACATACGACCTATCAATCTGGTACACATAGTAGCCTGCACTT
AGTACTACACACGTGACTTAACCATCTGATAGACG
Found at i:64589746 original size:20 final size:20
Alignment explanation
Indices: 64589721--64589760 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64589711 TGCAATTTTG
* *
64589721 AAAATTTTATAAGTTTCTGA
1 AAAATTCTATAAATTTCTGA
*
64589741 AAAATTCTCTAAATTTCTGA
1 AAAATTCTATAAATTTCTGA
64589761 TTTAGTCCCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.42
Consensus pattern (20 bp):
AAAATTCTATAAATTTCTGA
Found at i:64593038 original size:40 final size:40
Alignment explanation
Indices: 64592987--64593135 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
64592977 CGGATGATAT
* * *
64592987 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
64593027 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
64593067 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
64593107 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
64593136 GGTTGTTACA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.04
40 92 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:64601153 original size:40 final size:40
Alignment explanation
Indices: 64601098--64601209 Score: 154
Period size: 40 Copynumber: 2.8 Consensus size: 40
64601088 TATTCGGATG
64601098 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* *
64601138 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* ** *
64601178 ATAACCGGGTTAAG-TCCCGAAGGCATTCGTGC
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
64601210 GGGTTTTTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.02
40 63 0.98
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
Found at i:64601237 original size:39 final size:40
Alignment explanation
Indices: 64601114--64601253 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
64601104 GGACTAAGAT
* * * * **
64601114 CCGAAGGCATTTGTGCTAGTTACTATATCCGGACTAAGAT-
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGGTTAAG-TC
*
64601154 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTGGTTATTATAACCGGGTTAAGTC
* *
64601194 CCGAAGGCATTCGTGCGGGTTTTTATAA-CGGGTTAAGTC
1 CCGAAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTC
64601233 CCGAAGGCATTCGTGCTGGTT
1 CCGAAGGCATTCGTGCTGGTT
64601254 GTTACACCCG
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
39 35 0.39
40 51 0.57
41 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTC
Found at i:64603645 original size:17 final size:18
Alignment explanation
Indices: 64603603--64603645 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
64603593 TATCATTTAC
*
64603603 CATTTATCAAGCATTATT
1 CATTTATCGAGCATTATT
*
64603621 -ATTGATCGAGCATT-TT
1 CATTTATCGAGCATTATT
64603637 CATTTATCG
1 CATTTATCG
64603646 GGCTATACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (18 bp):
CATTTATCGAGCATTATT
Found at i:64612137 original size:13 final size:13
Alignment explanation
Indices: 64612119--64612143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64612109 TTCAATTCAG
64612119 ATTTTTACAACTC
1 ATTTTTACAACTC
64612132 ATTTTTACAACT
1 ATTTTTACAACT
64612144 TTTACAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTTACAACTC
Found at i:64616064 original size:297 final size:298
Alignment explanation
Indices: 64615530--64616124 Score: 1050
Period size: 297 Copynumber: 2.0 Consensus size: 298
64615520 AATGAGTTTG
*
64615530 TGATTTATAATGATGTCTCACTGAATGGATTAGGATGTGTATTGATGCAAGAGGGCAAAGTGATA
1 TGATTTATAATGATGTCTCACTGAATGGACTAGGATGTGTATTGATGCAAGAGGGCAAAGTGATA
* * * * *
64615595 GCTTATGTCCCGAGACAGTTGAAATCGTACCAGAAGAATTATCCGAAGCATGATTTGGAATTAGC
66 GCTTATGCCCCAAGACAGTTGAAATCGCACCAGAAGAATTATCCGAAGCATGATTCGAAATTAGC
* *
64615660 TGTCATTGTGTTTGCTTTAAAAATTTGGAGACATCATTTGTACGGTGAGAAATGTCATATCTTTA
131 TGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATCTTTA
*
64615725 CCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGTGGCAA-GAAGATGG
196 CCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGAAGATGG
64615789 CTCGAGTTATTGAAGGATTACGAGCTAGTAATTGATTA
261 CTCGAGTTATTGAAGGATTACGAGCTAGTAATTGATTA
*
64615827 TGATTTATAGTGATG-CGTCACTGAATGGACTAGGATGTGTATTGATGCAAGAGGGCAAAGTGAT
1 TGATTTATAATGATGTC-TCACTGAATGGACTAGGATGTGTATTGATGCAAGAGGGCAAAGTGAT
*
64615891 AGCTTATGCCCCAAGACAGTTGAAATCGCACCAGAAGAATTATCCGACGCATGATTCGAAATTAG
65 AGCTTATGCCCCAAGACAGTTGAAATCGCACCAGAAGAATTATCCGAAGCATGATTCGAAATTAG
64615956 CTGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATCTTT
130 CTGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATCTTT
*
64616021 ACCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGGAGATG
195 ACCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGAAGATG
*
64616086 GTTCGAGTTATTGAAGGATTACGAGCTAGTAATTGATTA
260 GCTCGAGTTATTGAAGGATTACGAGCTAGTAATTGATTA
64616125 CCACCCGGGT
Statistics
Matches: 283, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
296 1 0.00
297 238 0.84
298 44 0.16
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (298 bp):
TGATTTATAATGATGTCTCACTGAATGGACTAGGATGTGTATTGATGCAAGAGGGCAAAGTGATA
GCTTATGCCCCAAGACAGTTGAAATCGCACCAGAAGAATTATCCGAAGCATGATTCGAAATTAGC
TGCCATTGTGTTTGCTTTAAAAATTTGAAGACATCATTTGTACGGTGAGAAATGTCATATCTTTA
CCGATCATAAGAGTTTAAAATACTTGATGACTCAAAAAGATTTAAATTTGCGGCAACGAAGATGG
CTCGAGTTATTGAAGGATTACGAGCTAGTAATTGATTA
Found at i:64619749 original size:41 final size:39
Alignment explanation
Indices: 64619696--64619836 Score: 110
Period size: 41 Copynumber: 3.5 Consensus size: 39
64619686 AGTCCGACTC
* *
64619696 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAG-TCGGA
* *
64619735 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAGTCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACTAAGT-CGGA
* *
64619775 TTATGACACTGGCTCTAAAAAGTCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACTAAG-TCGG--A
64619820 TTAG-CACTGGCTCAAAA
1 TTAGACACTGGCTCAAAA
64619837 TGTAACACCC
Statistics
Matches: 82, Mismatches: 8, Indels: 22
0.73 0.07 0.20
Matches are distributed among these distances:
39 4 0.05
40 14 0.17
41 32 0.39
42 18 0.22
43 10 0.12
44 1 0.01
45 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.23
Consensus pattern (39 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGTCGGA
Found at i:64619809 original size:42 final size:42
Alignment explanation
Indices: 64619756--64619836 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
64619746 GCTCGAAGGC
*
64619756 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAAAGT
1 CCTTCGAAACTAAGTCCGGTTATGAGCACTGGCTC-AAAAAGT
* *
64619798 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAA
1 CCTTCGAAACTAAGTCCGGTTATGAGCACTGGCTCAAAA
64619837 TGTAACACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (42 bp):
CCTTCGAAACTAAGTCCGGTTATGAGCACTGGCTCAAAAAGT
Found at i:64621516 original size:47 final size:48
Alignment explanation
Indices: 64621356--64621657 Score: 502
Period size: 49 Copynumber: 6.3 Consensus size: 48
64621346 GCCCTTCGGG
*
64621356 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
64621406 ACTTTCACATTCATCACATCGGCCATTAGACCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
64621455 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
*
64621502 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
*
64621549 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
64621598 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
64621645 ACTTTCACATTCA
1 ACTTTCACATTCA
64621658 AATACTCATA
Statistics
Matches: 243, Mismatches: 7, Indels: 7
0.95 0.03 0.03
Matches are distributed among these distances:
47 112 0.46
49 127 0.52
50 4 0.02
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
Found at i:64621621 original size:143 final size:144
Alignment explanation
Indices: 64621356--64621657 Score: 534
Period size: 143 Copynumber: 2.1 Consensus size: 144
64621346 GCCCTTCGGG
64621356 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATC
*
64621421 ACATCGGCCATTAGACCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACATCGGCCATTAGACACTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64621486 CTTATCACATATATAC
129 CTTATCACATATATAC
* *
64621502 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
* *
64621566 ATCGGCCATTAGGCATTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
66 ATCGGCCATTAGACACTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
64621631 TATCACATATATAC
131 TATCACATATATAC
64621645 ACTTTCACATTCA
1 ACTTTCACATTCA
64621658 AATACTCATA
Statistics
Matches: 151, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
143 114 0.75
145 33 0.22
146 4 0.03
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (144 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGACACTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
TATCACATATATAC
Found at i:64632215 original size:42 final size:40
Alignment explanation
Indices: 64632110--64632256 Score: 138
Period size: 41 Copynumber: 3.6 Consensus size: 40
64632100 TCCGACTCTT
* * * *
64632110 AGCACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAG-TCCG-TTATG
* * *
64632151 A-CTACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATG
1 AGC-ACTGGCTCAAAAGCCCTTCGAAACTAAGTCC-GTTATG
* *
64632192 A-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGTTATG
64632233 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
64632257 GACCAAGCTC
Statistics
Matches: 88, Mismatches: 12, Indels: 13
0.78 0.11 0.12
Matches are distributed among these distances:
40 27 0.31
41 33 0.38
42 28 0.32
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGTTATG
Found at i:64641885 original size:67 final size:67
Alignment explanation
Indices: 64641751--64641888 Score: 186
Period size: 67 Copynumber: 2.1 Consensus size: 67
64641741 GAGGAAGCGT
* * ***
64641751 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCACCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCACCACATATATATGTTCTGGTGACCTAACCACAA
64641816 TA
66 TA
* * * * *
64641818 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATATGTTCTGGTGGCCTAACCAGAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCACCACATATATATGTTCTGGTGACCTAACCACAA
64641883 TA
66 TA
64641885 TCTG
1 TCTG
64641889 TATCTGGTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
67 61 1.00
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCCTCACCACATATATATGTTCTGGTGACCTAACCACAA
TA
Found at i:64644650 original size:42 final size:42
Alignment explanation
Indices: 64644602--64644721 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 42
64644592 ATTAGGGTTA
* *
64644602 ATGAGACTACGTGTAAGACTATATCTGGGATATGACATCGAT
1 ATGAGACTACATGTAAGACCATATCTGGGATATGACATCGAT
* * * *
64644644 ATGAGACTTCATGTAAGACCATAGCTGGGCTATTGGCATCGAT
1 ATGAGACTACATGTAAGACCATATCTGGGATA-TGACATCGAT
* *
64644687 ATGAGATTACATGTAAGACCATATTTGGGATATGA
1 ATGAGACTACATGTAAGACCATATCTGGGATATGA
64644722 AATTGGTACG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 29 0.45
43 36 0.55
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (42 bp):
ATGAGACTACATGTAAGACCATATCTGGGATATGACATCGAT
Found at i:64664552 original size:40 final size:40
Alignment explanation
Indices: 64664412--64664641 Score: 304
Period size: 40 Copynumber: 5.8 Consensus size: 40
64664402 TGGATGATAA
* * * * **
64664412 CCGGGCTAAGTCCCGAAGGCAATTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
64664452 CCGGGC-AAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
64664491 CCGGGC-AAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
64664530 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
64664570 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
64664611 -CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
64664642 AGCTATATCC
Statistics
Matches: 171, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 69 0.40
40 99 0.58
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:64671300 original size:39 final size:39
Alignment explanation
Indices: 64671199--64671374 Score: 178
Period size: 39 Copynumber: 4.5 Consensus size: 39
64671189 GGATGATAAG
* * * **
64671199 CGGGCTAAGTCTCGAAGGCAA-TTGGGCTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGG-AATTTGTGC-AGTTACTAAATC
* **
64671239 CGGGC-AAGTCCCGAAGGCATTTGTGCATGTTACTATCTC
1 CGGGCTAAGTCCCGAAGGAATTTGTGCA-GTTACTAAATC
*
64671278 CGGGC-AAGTCCCGAAGGAATTTGTGTGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGAATTTGTG-CAGTTACTAAATC
* * *
64671317 CAGGCTAAGTCCCGAAGGTATTTGTGCGAATTACTAAATC
1 CGGGCTAAGTCCCGAAGGAATTTGTGC-AGTTACTAAATC
64671357 CGGGCTAAGTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
64671375 CAAATGTGCG
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 61 0.53
40 53 0.46
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGAATTTGTGCAGTTACTAAATC
Found at i:64671383 original size:40 final size:40
Alignment explanation
Indices: 64671199--64671427 Score: 207
Period size: 40 Copynumber: 5.8 Consensus size: 40
64671189 GGATGATAAG
* * * * **
64671199 CGGGCTAAGTCTCGAAGGCAATTGGGCTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATC
* **
64671239 CGGGC-AAGTCCCGAAGGCATTTGTGC-ATGTTACTATCTC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGA-GTTACTAAATC
*
64671278 CGGGC-AAGTCCCGAAGG-AATTTGTGTGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCAA-TTGTGCGAGTTACTAAATC
* * * *
64671317 CAGGCTAAGTCCCGAAGGTATTTGTGCGAATTACTAAATC
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATC
* * * *
64671357 CGGGCTAAGTCCCGAAGGCAAATGTGCGAATCACTCTAA-C
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AAATC
* * *
64671397 CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGT
64671428 AGCTATATCC
Statistics
Matches: 158, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
38 2 0.01
39 61 0.39
40 92 0.58
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATC
Found at i:64677606 original size:27 final size:27
Alignment explanation
Indices: 64677553--64677615 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
64677543 AGGGGCATTT
* *
64677553 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGAGAAAAA
* *
64677580 CAGTCATTTTACCTCATGAGAGAAAAA
1 CAGTCATTTTACCACATAAGAGAAAAA
*
64677607 TAGTCATTT
1 CAGTCATTT
64677616 CATCAAATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGAGAAAAA
Found at i:64679260 original size:28 final size:27
Alignment explanation
Indices: 64679225--64679287 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
64679215 TTCCTTCAAT
64679225 CATA-ATAATATCATACATGTATGAAA
1 CATATATAATATCATACATGTATGAAA
* *
64679251 CATATCATAATATCATGCATGTATGCAA
1 CATAT-ATAATATCATACATGTATGAAA
64679279 CATATATAA
1 CATATATAA
64679288 AATGGCATGC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 25 0.76
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.32
Consensus pattern (27 bp):
CATATATAATATCATACATGTATGAAA
Found at i:64684800 original size:96 final size:97
Alignment explanation
Indices: 64684636--64684836 Score: 368
Period size: 96 Copynumber: 2.1 Consensus size: 97
64684626 ATACAGGGGA
* *
64684636 CACACGCCTGTGTCACAGGCCGTGTGGACATTCAAAATAGGATCACATGGCCTTGTTCCAGCTCG
1 CACACGCCCGTGTCACAGGCCGTGTGGACATTAAAAATAGGATCACATGGCCTTGTTCCAGCTCG
*
64684701 TGTAACTCTCTGACTTGGGTTACACGA-CAAC
66 TGTAACTCTCTGACTTGGGTCACACGACCAAC
64684732 CACACGCCCGTGTCACAGGCCGTGTGGACATTAAAAATAGGATCACATGGCCTTGTTCCAGCTCG
1 CACACGCCCGTGTCACAGGCCGTGTGGACATTAAAAATAGGATCACATGGCCTTGTTCCAGCTCG
64684797 TGTAACTCTCTGACTTGGGTCACACGACCAAC
66 TGTAACTCTCTGACTTGGGTCACACGACCAAC
64684829 CACACGCC
1 CACACGCC
64684837 TGTATGACCA
Statistics
Matches: 101, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 89 0.88
97 12 0.12
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (97 bp):
CACACGCCCGTGTCACAGGCCGTGTGGACATTAAAAATAGGATCACATGGCCTTGTTCCAGCTCG
TGTAACTCTCTGACTTGGGTCACACGACCAAC
Found at i:64686642 original size:40 final size:38
Alignment explanation
Indices: 64686598--64686738 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 38
64686588 CAGATATATA
64686598 TATATATGGCACTTAGTGTGCGATTCAAGAAAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGA-TC-AGAAAGCTTCGGC
* * *
64686638 TATATTTGGTACTTAGTGTGCGACTCAGAATGGCTTCGGC
1 TATATATGGCACTTAGTGTGCGA-TCAGAA-AGCTTCGGC
* * *
64686678 TATATATGGCACTTAGTGTGCAAGACCGAGATAGCTTTGGC
1 TATATATGGCACTTAGTGTGC--GATC-AGAAAGCTTCGGC
* *
64686719 TATGTAAGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
64686739 TGAGATTATA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 50 0.59
41 26 0.31
42 5 0.06
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (38 bp):
TATATATGGCACTTAGTGTGCGATCAGAAAGCTTCGGC
Found at i:64686753 original size:41 final size:42
Alignment explanation
Indices: 64686708--64686786 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
64686698 CAAGACCGAG
* *
64686708 ATAGCTTTGGCTATGTA-AGGCACTTAGTGTGTGAGATTATA
1 ATAGCTTTGACTATGTATAGGCACTTAGTGTGCGAGATTATA
*
64686749 ATAGCTTTGACTATGTATAGGTACTTAGTGTGCGAGAT
1 ATAGCTTTGACTATGTATAGGCACTTAGTGTGCGAGAT
64686787 ATTGAGTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 16 0.47
42 18 0.53
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.37
Consensus pattern (42 bp):
ATAGCTTTGACTATGTATAGGCACTTAGTGTGCGAGATTATA
Found at i:64688124 original size:17 final size:17
Alignment explanation
Indices: 64688080--64688127 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
64688070 ATAAGGGACC
*
64688080 AATTGATTG-A-GAATG
1 AATTGATTGAATGTATG
*
64688095 AA-TGA-TGATTGTATG
1 AATTGATTGAATGTATG
64688110 AATTGATTGAATGTATG
1 AATTGATTGAATGTATG
64688127 A
1 A
64688128 GAAAAGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
13 2 0.08
14 3 0.12
15 8 0.31
16 3 0.12
17 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (17 bp):
AATTGATTGAATGTATG
Found at i:64690254 original size:12 final size:12
Alignment explanation
Indices: 64690237--64690264 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
64690227 CTCTGTAGTC
64690237 TCTTGAATTGTA
1 TCTTGAATTGTA
64690249 TCTTGAATTGTA
1 TCTTGAATTGTA
64690261 TCTT
1 TCTT
64690265 TTTATGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.11, G:0.14, T:0.54
Consensus pattern (12 bp):
TCTTGAATTGTA
Found at i:64690279 original size:10 final size:10
Alignment explanation
Indices: 64690264--64690292 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
64690254 AATTGTATCT
64690264 TTTTATGTTA
1 TTTTATGTTA
64690274 TTTTATGTTA
1 TTTTATGTTA
64690284 TTTTATGTT
1 TTTTATGTT
64690293 TATTGTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.72
Consensus pattern (10 bp):
TTTTATGTTA
Found at i:64695454 original size:40 final size:40
Alignment explanation
Indices: 64695380--64695564 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
64695370 GCTACTCGTT
* *
64695380 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
64695420 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
64695460 CCAATGCCTTCGGG-CTTAGCCTGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
64695499 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
64695540 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64695565 CATCATTCGA
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 73 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64695548 original size:79 final size:80
Alignment explanation
Indices: 64695408--64695560 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 80
64695398 AGCCCAGTTA
* * *
64695408 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGTAACTAGCACCAAAGCCTTCGG
64695473 G-CTTAGCCTGAAAT
66 GACTTAGCCTGAAAT
* ** * *
64695487 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATGGTAAC-TAGCACCAAAGCCTTC
64695550 GGGACTTAGCC
64 GGGACTTAGCC
64695561 CGGACATCAT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.05
79 49 0.78
80 11 0.17
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATGGTAACTAGCACCAAAGCCTTCGG
GACTTAGCCTGAAAT
Found at i:64699008 original size:24 final size:24
Alignment explanation
Indices: 64698957--64699052 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
64698947 GTTTTATCAT
*
64698957 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
64698982 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64699006 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64699029 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64699053 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.47
25 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64699032 original size:23 final size:23
Alignment explanation
Indices: 64698978--64699050 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
64698968 CCTAGCCTCT
*
64698978 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
64699001 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
64699025 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
64699048 TTT
1 TTT
64699051 TACACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:64699126 original size:20 final size:20
Alignment explanation
Indices: 64699101--64699167 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
64699091 TTATGAATAC
64699101 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
64699121 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64699141 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
64699161 ACCATGT
1 ATCATGT
64699168 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:64699132 original size:11 final size:11
Alignment explanation
Indices: 64699101--64699156 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
64699091 TTATGAATAC
64699101 ATCATGTGCAT
1 ATCATGTGCAT
*
64699112 ATCA--TACAT
1 ATCATGTGCAT
64699121 ATCATGTGCAT
1 ATCATGTGCAT
*
64699132 ATCA--TACAT
1 ATCATGTGCAT
*
64699141 GTCATGTGCAT
1 ATCATGTGCAT
64699152 ATCAT
1 ATCAT
64699157 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:64704129 original size:28 final size:28
Alignment explanation
Indices: 64704084--64704145 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
64704074 TGTACCATCA
*
64704084 CATT-CTTACCTATCACATTTATCATTT
1 CATTGCTTACCTATCACATTTATCACTT
* *
64704111 CATTGCTTACCTGTTACATTTATCACTT
1 CATTGCTTACCTATCACATTTATCACTT
64704139 CATTGCT
1 CATTGCT
64704146 CGATGCATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.23, C:0.26, G:0.05, T:0.47
Consensus pattern (28 bp):
CATTGCTTACCTATCACATTTATCACTT
Found at i:64704371 original size:45 final size:45
Alignment explanation
Indices: 64704315--64704406 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 45
64704305 TCGCTATATA
*
64704315 TTCTCGCACACTTAGTACCATATTTAATAGCCGTAGCTATTTCAT
1 TTCTCGCACACTTAGTACCATATTTAATAGCCGTAGCCATTTCAT
*
64704360 TTCTCGTACACTTAGTACCATATTTAATAGCCGTAGCCATTTCAT
1 TTCTCGCACACTTAGTACCATATTTAATAGCCGTAGCCATTTCAT
64704405 TT
1 TT
64704407 TGACATATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (45 bp):
TTCTCGCACACTTAGTACCATATTTAATAGCCGTAGCCATTTCAT
Found at i:64708000 original size:26 final size:27
Alignment explanation
Indices: 64707970--64708023 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
64707960 ATCTCATATA
* *
64707970 TGTAGGCTAGTATTA-TGAAATACCCC
1 TGTAGGCTAGAATTACTGAAACACCCC
*
64707996 TGTAGGGTAGAATTACTGAAACACCCC
1 TGTAGGCTAGAATTACTGAAACACCCC
64708023 T
1 T
64708024 AGTTTGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (27 bp):
TGTAGGCTAGAATTACTGAAACACCCC
Found at i:64708036 original size:27 final size:27
Alignment explanation
Indices: 64708014--64708183 Score: 121
Period size: 27 Copynumber: 6.3 Consensus size: 27
64708004 AGAATTACTG
*
64708014 AAACACCCCTAGTTTGTAAAATTACCA
1 AAACACCCCTAATTTGTAAAATTACCA
* * *
64708041 AAATACCCCTAATTTGTGAAATTACCG
1 AAACACCCCTAATTTGTAAAATTACCA
** * *
64708068 AAGTA-CCCTCGACTTGTAAAATTACCA
1 AAACACCCCT-AATTTGTAAAATTACCA
* * * *
64708095 TAATA-CCCTCAATTTGTAAAATTATCG
1 AAACACCCCT-AATTTGTAAAATTACCA
* *
64708122 AAATA-CTCTCAATTTGTAAAATTACCA
1 AAACACCCCT-AATTTGTAAAATTACCA
* ** *
64708149 AAATACCCCTAATTTACAAAATTACAA
1 AAACACCCCTAATTTGTAAAATTACCA
*
64708176 AAATACCC
1 AAACACCC
64708184 TTGACTTTCA
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.03
27 111 0.94
28 3 0.03
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (27 bp):
AAACACCCCTAATTTGTAAAATTACCA
Found at i:64708085 original size:54 final size:54
Alignment explanation
Indices: 64708027--64708184 Score: 201
Period size: 54 Copynumber: 2.9 Consensus size: 54
64708017 CACCCCTAGT
* * *
64708027 TTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACCGAAGTACCCTCGAC
1 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCAAC
* * * *
64708081 TTGTAAAATTACCATAATA-CCCTCAATTTGTAAAATTATCGAAATACTCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTACCGAAATACCCTCAAC
** **
64708135 TTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCT
1 TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCCT
64708185 TGACTTTCAA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 4 0.05
54 80 0.91
55 4 0.05
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCAAC
Found at i:64708195 original size:27 final size:28
Alignment explanation
Indices: 64708139--64708240 Score: 104
Period size: 27 Copynumber: 3.8 Consensus size: 28
64708129 CTCAATTTGT
* *
64708139 AAAATTACCAAAATACCCCT-AATTTAC
1 AAAATTACAAAAATACCCTTGAATTTAC
*
64708166 AAAATTACAAAAATACCCTTGACTTT-C
1 AAAATTACAAAAATACCCTTGAATTTAC
* * *
64708193 AAAATTACAGAAAA-ACCATTG-GTTTGC
1 AAAATTACA-AAAATACCCTTGAATTTAC
*
64708220 AAAATTACTAAAATACCCTTG
1 AAAATTACAAAAATACCCTTG
64708241 GTTTGTAGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 8 0.12
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.27
Consensus pattern (28 bp):
AAAATTACAAAAATACCCTTGAATTTAC
Found at i:64708197 original size:54 final size:52
Alignment explanation
Indices: 64708030--64708240 Score: 165
Period size: 54 Copynumber: 3.9 Consensus size: 52
64708020 CCCTAGTTTG
** * * *
64708030 TAAAATTACCAAAATACCCCTAATTTGTGAAATTACCGAAGTACCCTCGACTT
1 TAAAATTACCAAAATACCCCTAATTTGCAAAATTA-CAAAATACCCTTGACTT
* * * * ** *
64708083 GTAAAATTACCATAATA-CCCTCAATTTGTAAAATTATCGAAATACTCTCAATTT
1 -TAAAATTACCAAAATACCCCT-AATTTGCAAAATTA-CAAAATACCCTTGACTT
*
64708137 GTAAAATTACCAAAATACCCCTAATTTACAAAATTACAAAAATACCCTTGACTT
1 -TAAAATTACCAAAATACCCCTAATTTGCAAAATTAC-AAAATACCCTTGACTT
* ** **
64708191 TCAAAATTA-CAGAAAAACCATTGGTTTGCAAAATTACTAAAATACCCTTG
1 T-AAAATTACCA-AAATACCCCTAATTTGCAAAATTAC-AAAATACCCTTG
64708241 GTTTGTAGAT
Statistics
Matches: 130, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
53 8 0.06
54 118 0.91
55 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (52 bp):
TAAAATTACCAAAATACCCCTAATTTGCAAAATTACAAAATACCCTTGACTT
Found at i:64710469 original size:8 final size:8
Alignment explanation
Indices: 64710456--64710480 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64710446 ATTAGGGACT
64710456 AAAATGTG
1 AAAATGTG
64710464 AAAATGTG
1 AAAATGTG
64710472 AAAATGTG
1 AAAATGTG
64710480 A
1 A
64710481 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:64711012 original size:43 final size:43
Alignment explanation
Indices: 64710841--64711013 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
64710831 GACATAGGAT
* * *
64710841 TCGATATGTG-TTATCGTGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATTTGATTA-CGTGTAAGACCACGTCTGGGACATTGGCA
* * * * *
64710884 TCGACT-TATGATTTACGTGTAAAACCATGTCTAGGACATCGGCA
1 TCGA-TATTTGA-TTACGTGTAAGACCACGTCTGGGACATTGGCA
** ** * *
64710928 TC-ATATTTGATTTTGTGTAAGACCTTGTTTGGGACAGTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
64710970 TCGATATTTGATTACATGTAAGACCACGTCTGGGACTTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
64711013 T
1 T
64711014 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
42 27 0.27
43 45 0.45
44 26 0.26
45 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:64727038 original size:22 final size:22
Alignment explanation
Indices: 64727013--64727080 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
64727003 AGCTACAAAA
64727013 ACCAAACTAAGCATATTTGTAC
1 ACCAAACTAAGCATATTTGTAC
** * ***
64727035 ACCAATTTCAGC-TA--CAAAC
1 ACCAAACTAAGCATATTTGTAC
64727054 ACCAAACTAAGCATATTTGTAC
1 ACCAAACTAAGCATATTTGTAC
64727076 ACCAA
1 ACCAA
64727081 TTTCAGCTAG
Statistics
Matches: 31, Mismatches: 12, Indels: 6
0.63 0.24 0.12
Matches are distributed among these distances:
19 11 0.35
20 2 0.06
21 2 0.06
22 16 0.52
ACGTcount: A:0.43, C:0.26, G:0.07, T:0.24
Consensus pattern (22 bp):
ACCAAACTAAGCATATTTGTAC
Found at i:64727048 original size:41 final size:41
Alignment explanation
Indices: 64727003--64727089 Score: 165
Period size: 41 Copynumber: 2.1 Consensus size: 41
64726993 ATTAGGTCAA
64727003 AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
1 AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
*
64727044 AGCTACAAACACCAAACTAAGCATATTTGTACACCAATTTC
1 AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
64727085 AGCTA
1 AGCTA
64727090 GTCTCTATAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.24
Consensus pattern (41 bp):
AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
Found at i:64745282 original size:22 final size:22
Alignment explanation
Indices: 64745257--64745324 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
64745247 AGCTACAAAA
64745257 ACCAAACTAAGCATATTTGTAC
1 ACCAAACTAAGCATATTTGTAC
** * ***
64745279 ACCAATTTCAGC-TA--CAAAC
1 ACCAAACTAAGCATATTTGTAC
64745298 ACCAAACTAAGCATATTTGTAC
1 ACCAAACTAAGCATATTTGTAC
64745320 ACCAA
1 ACCAA
64745325 TTTCAGCTAG
Statistics
Matches: 31, Mismatches: 12, Indels: 6
0.63 0.24 0.12
Matches are distributed among these distances:
19 11 0.35
20 2 0.06
21 2 0.06
22 16 0.52
ACGTcount: A:0.43, C:0.26, G:0.07, T:0.24
Consensus pattern (22 bp):
ACCAAACTAAGCATATTTGTAC
Found at i:64745292 original size:41 final size:41
Alignment explanation
Indices: 64745247--64745333 Score: 165
Period size: 41 Copynumber: 2.1 Consensus size: 41
64745237 ATTAGGTCAA
64745247 AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
1 AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
*
64745288 AGCTACAAACACCAAACTAAGCATATTTGTACACCAATTTC
1 AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
64745329 AGCTA
1 AGCTA
64745334 GTCTCTATAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.24
Consensus pattern (41 bp):
AGCTACAAAAACCAAACTAAGCATATTTGTACACCAATTTC
Found at i:64784139 original size:43 final size:43
Alignment explanation
Indices: 64784018--64784155 Score: 133
Period size: 43 Copynumber: 3.2 Consensus size: 43
64784008 TGTGTTATCG
64784018 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCGAT-TTATGATTTACA
1 TGTAAGACC-CTATCTGGGACAG-TGGCATCGATATT-TGATTT-CA
* ** * *
64784062 TGTAAAACAATGTCTGGGACA-TCAGCATCG-TATTTGATTTCA
1 TGTAAGACCCTATCTGGGACAGT-GGCATCGATATTTGATTTCA
* *
64784104 TGCAAGACCCTATCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTATCTGGGACAGTGGCATCGATATTTGATTTCA
64784147 TGTAAGACC
1 TGTAAGACC
64784156 ACGTCTAGGA
Statistics
Matches: 75, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
42 24 0.32
43 28 0.37
44 23 0.31
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (43 bp):
TGTAAGACCCTATCTGGGACAGTGGCATCGATATTTGATTTCA
Found at i:64787260 original size:48 final size:47
Alignment explanation
Indices: 64787141--64787419 Score: 185
Period size: 48 Copynumber: 5.9 Consensus size: 47
64787131 CACATGAAAA
* * *
64787141 GATGCCAATGCCATGTCCCAGACGTGGTCTTACATGGGATCTC--AC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAC
* *** * *
64787186 -AT--CAATGCCAACAACCCAG-CTTTGGTCTTACAC-GAAGTCTCATAAC
1 GATGCCGATGCC-ATGTCCCAGAC-ATGGTCTTACACGGGA-TCTCAT-AC
* * * *
64787232 GGTGCCGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATGTC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCAT-AC
* * * *
64787280 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATAC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAC
* * ** * * *
64787327 TGATACCGATGCCATGTCCCAGACGTCATCTTATATGGGATCTCTTATC
1 -GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATA-C
* * * * *
64787376 AATGCCGATGCCATATCCTAGATATGGTCTTACACAGGATCTCA
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCA
64787420 ATACTCACAT
Statistics
Matches: 175, Mismatches: 46, Indels: 23
0.72 0.19 0.09
Matches are distributed among these distances:
42 10 0.06
43 20 0.11
44 2 0.01
46 2 0.01
47 2 0.01
48 129 0.74
49 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAC
Found at i:64787340 original size:96 final size:97
Alignment explanation
Indices: 64787236--64787424 Score: 263
Period size: 96 Copynumber: 2.0 Consensus size: 97
64787226 CATAACGGTG
** * *
64787236 CCGATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATGTCGATGCCAATGCCATATCCCAG
1 CCGATGCCATGTCCCAGACATCATCTTATACGGGACCTCATATCAATGCCAATGCCATATCCCAG
**
64787301 ATATGGTCTTACATGGGATCTC-ATACTGATA
66 ATATGGTCTTACACAGGATCTCAATACTGATA
* * * * * *
64787332 CCGATGCCATGTCCCAGACGTCATCTTATATGGGATCTCTTATCAATGCCGATGCCATATCCTAG
1 CCGATGCCATGTCCCAGACATCATCTTATACGGGACCTCATATCAATGCCAATGCCATATCCCAG
64787397 ATATGGTCTTACACAGGATCTCAATACT
66 ATATGGTCTTACACAGGATCTCAATACT
64787425 CACATGTCGT
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
96 75 0.94
97 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (97 bp):
CCGATGCCATGTCCCAGACATCATCTTATACGGGACCTCATATCAATGCCAATGCCATATCCCAG
ATATGGTCTTACACAGGATCTCAATACTGATA
Found at i:64791891 original size:18 final size:18
Alignment explanation
Indices: 64791868--64791903 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64791858 TTGGTATCAC
64791868 ATATCGATGCCATGGTCT
1 ATATCGATGCCATGGTCT
64791886 ATATCGATGCCATGGTCT
1 ATATCGATGCCATGGTCT
64791904 TACTCGTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
ATATCGATGCCATGGTCT
Found at i:64797413 original size:48 final size:47
Alignment explanation
Indices: 64797361--64797508 Score: 136
Period size: 48 Copynumber: 3.1 Consensus size: 47
64797351 TATACGAGAC
* *
64797361 CTCATGTCGATGCCAATGCCATATCCCAAATATGGTCTTGCATGGGAT
1 CTCAT-TCGATGCCGATGCCATATCCCAAATATGGTCTTACATGGGAT
* ** * * * * *
64797409 CTCATACTGATATCGATGCCATGTCCTAAACGA-GGTTTTATATGGGAT
1 CTCATTC-GATGCCGATGCCATATCCCAAA-TATGGTCTTACATGGGAT
* * *
64797457 CTCTTATCGAGGCCGATGCCATATCCCAAATATGGTCTTACATGAGAT
1 CTCAT-TCGATGCCGATGCCATATCCCAAATATGGTCTTACATGGGAT
64797505 CTCA
1 CTCA
64797509 ATATTCACAT
Statistics
Matches: 74, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
47 2 0.03
48 70 0.95
49 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (47 bp):
CTCATTCGATGCCGATGCCATATCCCAAATATGGTCTTACATGGGAT
Found at i:64798610 original size:13 final size:13
Alignment explanation
Indices: 64798592--64798616 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64798582 CCCAAACGTT
64798592 AAAATTTTCAAAC
1 AAAATTTTCAAAC
64798605 AAAATTTTCAAA
1 AAAATTTTCAAA
64798617 AAATCATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCAAAC
Found at i:64799760 original size:18 final size:18
Alignment explanation
Indices: 64799730--64799776 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
64799720 TGGACCATTA
*
64799730 CAATAACAATAATTAGTG
1 CAATAACAATAATCAGTG
* *
64799748 CAGTAACAGTAATCAGTG
1 CAATAACAATAATCAGTG
64799766 CAATAACAATA
1 CAATAACAATA
64799777 TACAAGTCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (18 bp):
CAATAACAATAATCAGTG
Found at i:64800137 original size:27 final size:27
Alignment explanation
Indices: 64800105--64800409 Score: 414
Period size: 27 Copynumber: 11.3 Consensus size: 27
64800095 AAGGAGAAAC
* * *
64800105 AGTCATCTTACCATATAAGGGAAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
64800132 AGTCATTTTACCACATAAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* *
64800159 AGTCATTTTACTACATAAGGGCAAAAA
1 AGTCATTTTACCACATAAGGGCAAAAT
*
64800186 AGTCATTTTACCACATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAT
64800213 AGTCATTTTACCACATTAA-GGCAAAAT
1 AGTCATTTTACCACA-TAAGGGCAAAAT
* * * *
64800240 AGTCACTATACCACATAAGAGCAAAGT
1 AGTCATTTTACCACATAAGGGCAAAAT
* *
64800267 AGTCATTTTACCGCATATGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
*
64800294 AGTCATTTTACCACAAAAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* * * *
64800321 AATCATTTTACCATACAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAT
*
64800348 AGTCATTTTACCATATAAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
* *
64800375 AATCATTTTACCATATAAGGGCAAAAT
1 AGTCATTTTACCACATAAGGGCAAAAT
64800402 AGTCATTT
1 AGTCATTT
64800410 ATCAATTTGG
Statistics
Matches: 246, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 3 0.01
27 240 0.98
28 3 0.01
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (27 bp):
AGTCATTTTACCACATAAGGGCAAAAT
Found at i:64803570 original size:17 final size:18
Alignment explanation
Indices: 64803550--64803586 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
64803540 ATAAACTATT
*
64803550 AATAATTTAAT-AAATTA
1 AATAATTAAATAAAATTA
64803567 AATAATTAAATAAAATTA
1 AATAATTAAATAAAATTA
64803585 AA
1 AA
64803587 ATTTAGGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AATAATTAAATAAAATTA
Found at i:64806329 original size:47 final size:47
Alignment explanation
Indices: 64806266--64806773 Score: 874
Period size: 47 Copynumber: 10.7 Consensus size: 47
64806256 ATGATAGTAT
64806266 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64806313 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
64806360 TGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64806407 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
64806454 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
64806501 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64806548 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
64806594 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
64806643 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
64806692 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
64806741 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
64806774 CCCGAAGGGC
Statistics
Matches: 448, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
46 33 0.07
47 273 0.61
48 12 0.03
49 126 0.28
50 4 0.01
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:64806947 original size:37 final size:37
Alignment explanation
Indices: 64806891--64806969 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64806881 CCGAGCTCTA
* * * *
64806891 AAGATCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64806928 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64806965 AAGAC
1 AAGAC
64806970 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64810587 original size:33 final size:33
Alignment explanation
Indices: 64810527--64810592 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
64810517 CAAATCGGTA
* * * *
64810527 ACAGTCTAGGCCTGAGTCTTATTCAGTATCAGT
1 ACAGTCTAGGCCTGAGCCCTATACAGTAACAGT
* *
64810560 ACAGTCTAGGTCTTAGCCCTATACAGTAACAGT
1 ACAGTCTAGGCCTGAGCCCTATACAGTAACAGT
64810593 GTGGGCCTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (33 bp):
ACAGTCTAGGCCTGAGCCCTATACAGTAACAGT
Found at i:64810807 original size:27 final size:27
Alignment explanation
Indices: 64810775--64810856 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
64810765 AGCTGCTAGA
*
64810775 AACAGTAAATGTGGCAAAGCTACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
* * *
64810802 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
* * * *
64810829 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
64810856 A
1 A
64810857 CATTACTTCC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
AACAGTAAATGTGGCAAAGCCACCAGT
Done.