Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 201 of 290
Found at i:64811377 original size:27 final size:27
Alignment explanation
Indices: 64810997--64811371 Score: 439
Period size: 27 Copynumber: 13.9 Consensus size: 27
64810987 GGGCATAATC
* * *
64810997 GTCATTTTACCATATAGGTGTATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
64811024 GTCGTTTTACCCTACAGGGGAATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
64811051 GTCATTTTACCCTTTAGGGGCATTATG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
64811078 GTCGTTTTACCCTACAGGTGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
64811105 GTCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
*
64811132 GTTATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
64811159 GTCATTTTACCTTACAGGGGGATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * *
64811186 GTCATTTTACCTTACAAGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* * ** *
64811213 GTCATTTTATCCTATAGAGTTATTACA
1 GTCATTTTACCCTATAGGGGCATTACG
*
64811240 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
64811267 GTCA-TTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGCATTACG
* *
64811293 GTCATTTTACCCTATAGGGGTATTACA
1 GTCATTTTACCCTATAGGGGCATTACG
* *
64811320 GTCATTTTACCCTA-CGAGGGTATTACG
1 GTCATTTTACCCTATAG-GGGCATTACG
* *
64811347 GTTATTTTACCCTATAGGGGTATTA
1 GTCATTTTACCCTATAGGGGCATTA
64811372 TGGTTAAATA
Statistics
Matches: 297, Mismatches: 48, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
26 26 0.09
27 270 0.91
28 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGCATTACG
Found at i:64813392 original size:272 final size:272
Alignment explanation
Indices: 64812906--64813715 Score: 1523
Period size: 272 Copynumber: 3.0 Consensus size: 272
64812896 GACAAGAGAA
* *
64812906 CAAAATAAATACTCTTCTTACCTTGCCACGACTTGAACCTTAGACCTCAAGAGAACTACACACGC
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACTCCACACGC
*
64812971 CACCTACCACTGCACCATAAGCTCTTTTCGTGACACATTTTACCCACAAATATTTATAAGGCCTA
66 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
64813036 CAAGCTAAAGCCAAGGTTCAGTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
131 CAAGCTAAAGCCAAGGTTCAGTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
64813101 CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
196 CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
64813166 GTGCCAAGGGAG
261 GTGCCAAGGGAG
*
64813178 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACTCCAAACGC
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACTCCACACGC
64813243 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
66 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
64813308 CAAGCTAAAGCCAAGGTTCAGTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
131 CAAGCTAAAGCCAAGGTTCAGTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
64813373 CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
196 CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
64813438 GTGCCAAGGGAG
261 GTGCCAAGGGAG
64813450 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACTCCACACGC
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACTCCACACGC
64813515 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
66 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
* *
64813580 CAAGCTAAAGCCAAGGTTCACTTAA-GGGAAGAAAGTAAAATTTTTGCAAAAGCCCAGACTTGAA
131 CAAGCTAAAGCCAAGGTTCAGTTAAGGGGAA-AAACTAAAATTTTTGCAAAAGCCCAGACTTGAA
* * *
64813644 CCCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCTAATAAAGCAAACATGAAATT
195 CCCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTT
64813709 TGTGCCA
260 TGTGCCA
64813716 CTTTCTTGCT
Statistics
Matches: 527, Mismatches: 10, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
271 5 0.01
272 522 0.99
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (272 bp):
CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACTCCACACGC
CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
CAAGCTAAAGCCAAGGTTCAGTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
GTGCCAAGGGAG
Found at i:64823055 original size:30 final size:30
Alignment explanation
Indices: 64822998--64823056 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
64822988 ATTCCTTAAA
* *
64822998 AATATTTACAAAAAGAGGCATTTAATTTTT
1 AATATTTACAAAAAGAGGCACTGAATTTTT
*
64823028 AATATTTACAGAAAGA-GCAACTGAATTTT
1 AATATTTACAAAAAGAGGC-ACTGAATTTT
64823057 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACTGAATTTTT
Found at i:64830824 original size:40 final size:39
Alignment explanation
Indices: 64830724--64830874 Score: 158
Period size: 40 Copynumber: 3.7 Consensus size: 39
64830714 CATGGTTACT
*
64830724 CGAATGATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAG
1 CGAAT-ATATCCGGGCTAAGTCC-GAAGGCATTTGTGCT-AG
* * *
64830766 CGACTACATCCGGACTAAGATCCGAAGGCATTTGTGCTAG
1 CGAATATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAG
*
64830806 CGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 CGAATATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAG
* ** * *
64830846 TGACCATATCCGGGTTAAGACCCGAAGGC
1 CGAATATATCCGGGCTAAG-TCCGAAGGC
64830875 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 59 0.63
41 26 0.28
42 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (39 bp):
CGAATATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAG
Found at i:64835191 original size:40 final size:40
Alignment explanation
Indices: 64835131--64835311 Score: 242
Period size: 40 Copynumber: 4.5 Consensus size: 40
64835121 TATTCGGATG
* *
64835131 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
*
64835171 ATA-CTCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTAC-T
* * *
64835211 ATATCCGGGCTAAATCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
* * *
64835251 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
64835291 ATATCC-GGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64835312 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 17 0.14
40 104 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
Found at i:64845246 original size:26 final size:26
Alignment explanation
Indices: 64845210--64845270 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
64845200 GGTGGCTGAG
*
64845210 TTGGTCTAGGTTTGGCATATGTGTTA
1 TTGGTCTAGGTTGGGCATATGTGTTA
64845236 TTGGTCTAGGTTGGGCATATGTGTTA
1 TTGGTCTAGGTTGGGCATATGTGTTA
64845262 TTGGGTCTA
1 TT-GGTCTA
64845271 TCCCCTTGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 27 0.82
27 6 0.18
ACGTcount: A:0.15, C:0.08, G:0.33, T:0.44
Consensus pattern (26 bp):
TTGGTCTAGGTTGGGCATATGTGTTA
Found at i:64851173 original size:10 final size:10
Alignment explanation
Indices: 64851154--64851200 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
64851144 AAATCTGTCG
64851154 AAAA-TAATA
1 AAAATTAATA
64851163 AAAATTAATA
1 AAAATTAATA
64851173 AAAATTAATTA
1 AAAATTAA-TA
*
64851184 TAAAATTAATT
1 -AAAATTAATA
64851195 AAAATT
1 AAAATT
64851201 CATTATGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 4 0.12
10 19 0.56
11 3 0.09
12 8 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATTAATA
Found at i:64851190 original size:12 final size:11
Alignment explanation
Indices: 64851161--64851198 Score: 60
Period size: 12 Copynumber: 3.5 Consensus size: 11
64851151 TCGAAAATAA
64851161 TAAAAATTAA-
1 TAAAAATTAAT
64851171 TAAAAATTAAT
1 TAAAAATTAAT
64851182 TATAAAATTAAT
1 TA-AAAATTAAT
64851194 TAAAA
1 TAAAA
64851199 TTCATTATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.38
11 5 0.19
12 11 0.42
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAAAATTAAT
Found at i:64851190 original size:22 final size:22
Alignment explanation
Indices: 64851163--64851206 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
64851153 GAAAATAATA
64851163 AAAATTAATAAAAATTAATTAT
1 AAAATTAATAAAAATTAATTAT
* *
64851185 AAAATTAATTAAAATTCATTAT
1 AAAATTAATAAAAATTAATTAT
64851207 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTAATTAT
Found at i:64859147 original size:29 final size:30
Alignment explanation
Indices: 64859100--64859156 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
64859090 TACTTCAGCT
*
64859100 AACTTGAAAGAATTACTCACCTCCATAAGG
1 AACTTGAAAGAATCACTCACCTCCATAAGG
*
64859130 AACTTTAAA-AATCACTCACCTCCATAA
1 AACTTGAAAGAATCACTCACCTCCATAA
64859157 CTTAAGCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.42, C:0.26, G:0.07, T:0.25
Consensus pattern (30 bp):
AACTTGAAAGAATCACTCACCTCCATAAGG
Found at i:64860486 original size:48 final size:48
Alignment explanation
Indices: 64860415--64860675 Score: 276
Period size: 48 Copynumber: 5.7 Consensus size: 48
64860405 TACCATGGTT
*
64860415 ATACATGTAACGTGGAGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64860463 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
64860511 ATTCAT-TAACGTGGTACTAAGTGGATAT---AC-----CACA-GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
64860548 ATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * * * *
64860596 ATACATGTAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
*
64860644 ATTCAT-TAACGTGGTGCTAAGTGGATATACCA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCA
64860676 TGGTTAAACA
Statistics
Matches: 175, Mismatches: 27, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
37 4 0.02
38 22 0.13
39 3 0.02
41 1 0.01
44 2 0.01
46 4 0.02
47 46 0.26
48 93 0.53
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:64860574 original size:85 final size:86
Alignment explanation
Indices: 64860463--64860624 Score: 236
Period size: 85 Copynumber: 1.9 Consensus size: 86
64860453 ACACATATTG
* * *
64860463 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACGTGGTA
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
64860527 CTAAGTGGATATACCACAGTT
66 CTAAGTGGATATACCACAGTT
* * * * *
64860548 ATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
*
64860613 CTAATTGGATAT
66 CTAAGTGGATAT
64860625 GCAACGGTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
85 47 0.70
86 20 0.30
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (86 bp):
ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
CTAAGTGGATATACCACAGTT
Found at i:64860632 original size:133 final size:133
Alignment explanation
Indices: 64860389--64860724 Score: 555
Period size: 133 Copynumber: 2.5 Consensus size: 133
64860379 TGGAAAAACT
*
64860389 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGAGCTAAGTGGATATACCACGATTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
64860454 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
64860519 ACG
131 ACG
* ** * * *
64860522 TGGTACTAAGTGGATATACCACAGTTATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
64860587 CACATATTGATACATGTAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
64860652 ACG
131 ACG
* * *
64860655 TGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
64860720 TACAT
66 CACAT
64860725 GTTAATTTGA
Statistics
Matches: 185, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 185 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (133 bp):
TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
ACG
Found at i:64860701 original size:38 final size:38
Alignment explanation
Indices: 64860650--64860726 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
64860640 ATCGATTCAT
*
64860650 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* *
64860688 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
64860726 T
1 T
64860727 TAATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:64863656 original size:15 final size:15
Alignment explanation
Indices: 64863616--64863675 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
64863606 TAGTATCGTA
64863616 TCTTGGGTTTCTTTAT
1 TCTT-GGTTTCTTTAT
*
64863632 T-ATGGATTTCTTTAT
1 TCTTGG-TTTCTTTAT
*
64863647 TCTTGGTTTCTCTA-
1 TCTTGGTTTCTTTAT
*
64863661 TCTTGAATTTCTTTA
1 TCTTG-GTTTCTTTA
64863676 CTCAGTTTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
14 7 0.19
15 25 0.69
16 4 0.11
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (15 bp):
TCTTGGTTTCTTTAT
Found at i:64863656 original size:30 final size:31
Alignment explanation
Indices: 64863616--64863675 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
64863606 TAGTATCGTA
* *
64863616 TCTTGGGTTTCTTTAT-TATGGATTTCTTTAT
1 TCTTGGGTTTCTCTATCT-TGAATTTCTTTAT
64863647 TCTT-GGTTTCTCTATCTTGAATTTCTTTA
1 TCTTGGGTTTCTCTATCTTGAATTTCTTTA
64863676 CTCAGTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (31 bp):
TCTTGGGTTTCTCTATCTTGAATTTCTTTAT
Found at i:64866691 original size:40 final size:39
Alignment explanation
Indices: 64866614--64866757 Score: 180
Period size: 40 Copynumber: 3.6 Consensus size: 39
64866604 TACTCGAATG
*
64866614 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
* *
64866654 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
64866694 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGCGACT
* *
64866734 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
64866758 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 73 0.80
41 17 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:64868904 original size:38 final size:38
Alignment explanation
Indices: 64868853--64869190 Score: 181
Period size: 38 Copynumber: 7.9 Consensus size: 38
64868843 GGAATGGAAA
*
64868853 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
** *
64868891 AACGTGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGG--ATA-TAC-----CAC-GGTT-ATACGTGT
* *
64868939 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GT
*
64868986 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
** *
64869024 AACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATA-C-------CAC-GGTT-ATACGTGT
* *
64869072 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GT
* * *
64869119 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
* *
64869157 AACATGGTGCTAAGTGGATATGCCACGGTTATAC
1 AACGTGGTGCTAAGTGGATATACCACGGTTATAC
64869191 ATGTTAATTT
Statistics
Matches: 234, Mismatches: 28, Indels: 76
0.69 0.08 0.22
Matches are distributed among these distances:
38 71 0.30
39 1 0.00
40 13 0.06
41 3 0.01
42 9 0.04
43 11 0.05
45 4 0.02
46 11 0.05
47 59 0.25
48 52 0.22
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
Found at i:64868944 original size:48 final size:48
Alignment explanation
Indices: 64868883--64869154 Score: 289
Period size: 48 Copynumber: 5.9 Consensus size: 48
64868873 TACCACGGTT
* *
64868883 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64868931 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
64868979 ATTCAT-TAACGTGGTACTAAGTGGATATACCACG---------GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
64869016 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64869064 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64869112 ATTCAT-TAACATGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
64869155 GTAACATGGT
Statistics
Matches: 186, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
37 4 0.02
38 27 0.15
47 61 0.33
48 94 0.51
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:64869006 original size:95 final size:95
Alignment explanation
Indices: 64868883--64869154 Score: 287
Period size: 95 Copynumber: 3.0 Consensus size: 95
64868873 TACCACGGTT
*
64868883 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACTACG-TTACACATATTGATACATGTAACGTGGTG
* *
64868948 CTAAGTGGATATGCCACGGTTACATATATCG
65 CTAAGTGGATATACCACGGTTACACATATCG
* * ** *
64868979 ATTCAT-TAACGTGGTACTAAGTGG--ATA-TAC----CAC-GGTT-ATACGTGTAACGTGGTGC
1 ATACATGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGC
* * *
64869034 TAAGTGGATATACCATGATTACACATATTG
66 TAAGTGGATATACCACGGTTACACATATCG
* * * * * *
64869064 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACATGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACTAC-GTTACACATATTGATACATGTAACGTGGTG
*
64869128 CTAAGTGGATATACCACGGTTAAACAT
65 CTAAGTGGATATACCACGGTTACACAT
64869155 GTAACATGGT
Statistics
Matches: 140, Mismatches: 25, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
85 47 0.34
86 19 0.14
87 3 0.02
88 2 0.01
89 2 0.01
92 3 0.02
93 3 0.02
94 2 0.01
95 51 0.36
96 8 0.06
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (95 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGC
TAAGTGGATATACCACGGTTACACATATCG
Found at i:64869041 original size:85 final size:86
Alignment explanation
Indices: 64868931--64869102 Score: 256
Period size: 85 Copynumber: 2.0 Consensus size: 86
64868921 ACACATATTG
* * * *
64868931 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACGTGGTA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTGGTA
64868995 CTAAGTGGATATACCACGGTT
66 CTAAGTGGATATACCACGGTT
* * * *
64869016 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTGGTA
*
64869081 CTAAGTGGATATGCCACGGTT
66 CTAAGTGGATATACCACGGTT
64869102 A
1 A
64869103 CATATATCGA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 47 0.61
86 30 0.39
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (86 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTGGTA
CTAAGTGGATATACCACGGTT
Found at i:64869091 original size:133 final size:133
Alignment explanation
Indices: 64868853--64869192 Score: 590
Period size: 133 Copynumber: 2.6 Consensus size: 133
64868843 GGAATGGAAA
*
64868853 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACTACG
1 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
64868918 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
64868983 ATT
131 ATT
*
64868986 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCATG
1 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
64869051 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
64869116 ATT
131 ATT
* * * * * *
64869119 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATATGCCACG
1 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
* *
64869184 GTTATACAT
66 ATTACACAT
64869193 GTTAATTTGA
Statistics
Matches: 196, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 196 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (133 bp):
AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
ATT
Found at i:64872761 original size:46 final size:46
Alignment explanation
Indices: 64872625--64872751 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
64872615 TATATATACA
* * *
64872625 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
64872671 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
64872717 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
64872752 CGCCACATAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:64872806 original size:47 final size:47
Alignment explanation
Indices: 64872771--64872921 Score: 284
Period size: 47 Copynumber: 3.2 Consensus size: 47
64872761 TATACACTTA
**
64872771 CACATTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
64872818 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
64872865 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
64872912 CACATTCATC
1 CACATTCATC
64872922 TCATAAAATC
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
Found at i:64872853 original size:22 final size:22
Alignment explanation
Indices: 64872825--64872900 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
64872815 GTTCACATTC
64872825 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
64872847 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64872871 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64872894 ATCACAT
1 ATCACAT
64872901 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64879440 original size:38 final size:38
Alignment explanation
Indices: 64879389--64879726 Score: 181
Period size: 38 Copynumber: 7.9 Consensus size: 38
64879379 GGAATGGAAA
*
64879389 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
** *
64879427 AACGTGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGG--ATA-TAC-----CAC-GGTT-ATACGTGT
* *
64879475 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GT
*
64879522 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
** *
64879560 AACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATA-C-------CAC-GGTT-ATACGTGT
* *
64879608 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GT
* * *
64879655 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
* *
64879693 AACATGGTGCTAAGTGGATATGCCACGGTTATAC
1 AACGTGGTGCTAAGTGGATATACCACGGTTATAC
64879727 ATGTTAATTT
Statistics
Matches: 234, Mismatches: 28, Indels: 76
0.69 0.08 0.22
Matches are distributed among these distances:
38 71 0.30
39 1 0.00
40 13 0.06
41 3 0.01
42 9 0.04
43 11 0.05
45 4 0.02
46 11 0.05
47 59 0.25
48 52 0.22
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
Found at i:64879480 original size:48 final size:48
Alignment explanation
Indices: 64879419--64879690 Score: 289
Period size: 48 Copynumber: 5.9 Consensus size: 48
64879409 TACCACGGTT
* *
64879419 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64879467 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
64879515 ATTCAT-TAACGTGGTACTAAGTGGATATACCACG---------GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
64879552 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64879600 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
64879648 ATTCAT-TAACATGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
64879691 GTAACATGGT
Statistics
Matches: 186, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
37 4 0.02
38 27 0.15
47 61 0.33
48 94 0.51
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:64879542 original size:95 final size:95
Alignment explanation
Indices: 64879419--64879690 Score: 287
Period size: 95 Copynumber: 3.0 Consensus size: 95
64879409 TACCACGGTT
*
64879419 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACTACG-TTACACATATTGATACATGTAACGTGGTG
* *
64879484 CTAAGTGGATATGCCACGGTTACATATATCG
65 CTAAGTGGATATACCACGGTTACACATATCG
* * ** *
64879515 ATTCAT-TAACGTGGTACTAAGTGG--ATA-TAC----CAC-GGTT-ATACGTGTAACGTGGTGC
1 ATACATGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGC
* * *
64879570 TAAGTGGATATACCATGATTACACATATTG
66 TAAGTGGATATACCACGGTTACACATATCG
* * * * * *
64879600 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACATGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACTAC-GTTACACATATTGATACATGTAACGTGGTG
*
64879664 CTAAGTGGATATACCACGGTTAAACAT
65 CTAAGTGGATATACCACGGTTACACAT
64879691 GTAACATGGT
Statistics
Matches: 140, Mismatches: 25, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
85 47 0.34
86 19 0.14
87 3 0.02
88 2 0.01
89 2 0.01
92 3 0.02
93 3 0.02
94 2 0.01
95 51 0.36
96 8 0.06
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (95 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGC
TAAGTGGATATACCACGGTTACACATATCG
Found at i:64879577 original size:85 final size:86
Alignment explanation
Indices: 64879467--64879638 Score: 256
Period size: 85 Copynumber: 2.0 Consensus size: 86
64879457 ACACATATTG
* * * *
64879467 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACGTGGTA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTGGTA
64879531 CTAAGTGGATATACCACGGTT
66 CTAAGTGGATATACCACGGTT
* * * *
64879552 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTGGTA
*
64879617 CTAAGTGGATATGCCACGGTT
66 CTAAGTGGATATACCACGGTT
64879638 A
1 A
64879639 CATATATCGA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 47 0.61
86 30 0.39
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (86 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATCGATACATGTAACGTGGTA
CTAAGTGGATATACCACGGTT
Found at i:64879627 original size:133 final size:133
Alignment explanation
Indices: 64879389--64879728 Score: 590
Period size: 133 Copynumber: 2.6 Consensus size: 133
64879379 GGAATGGAAA
*
64879389 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACTACG
1 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
64879454 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
64879519 ATT
131 ATT
*
64879522 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCATG
1 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
64879587 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
64879652 ATT
131 ATT
* * * * * *
64879655 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATATGCCACG
1 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
* *
64879720 GTTATACAT
66 ATTACACAT
64879729 GTTAATTTGA
Statistics
Matches: 196, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 196 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (133 bp):
AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
ATT
Found at i:64883298 original size:46 final size:46
Alignment explanation
Indices: 64883162--64883288 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
64883152 TATATATACA
* * *
64883162 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
64883208 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
64883254 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
64883289 CGCCACATAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:64883343 original size:47 final size:47
Alignment explanation
Indices: 64883308--64883458 Score: 284
Period size: 47 Copynumber: 3.2 Consensus size: 47
64883298 TATACACTTA
**
64883308 CACATTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
64883355 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
64883402 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
64883449 CACATTCATC
1 CACATTCATC
64883459 TCATAAAATC
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
Found at i:64883390 original size:22 final size:22
Alignment explanation
Indices: 64883362--64883437 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
64883352 GTTCACATTC
64883362 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
64883384 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64883408 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64883431 ATCACAT
1 ATCACAT
64883438 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64886509 original size:116 final size:116
Alignment explanation
Indices: 64886369--64886601 Score: 394
Period size: 116 Copynumber: 2.0 Consensus size: 116
64886359 TTACCATATT
* * * *
64886369 ACTATAACACACTTTTCTGGTAAGTCATGGTATGTATTACTAAATTATCAAGAGGTTATTCTTAA
1 ACTATAACACACTTTTCTAGTAAGTCATGGTAAGTATTACCAAATTATCAAGAGGTTATTCTAAA
* *
64886434 TATAAGTTCTAATTAAACCATTCATTTTCTCATCATTTTCGTAGAAAATGA
66 TATAAGTTCTAATTAAACCATTCATTATCTCATCATTTTCATAGAAAATGA
* *
64886485 ACTATAACACACTTTTCTATTAAGTCATGGTAAGTATTACCAAATTATCGAGAGGTTATTCTAAA
1 ACTATAACACACTTTTCTAGTAAGTCATGGTAAGTATTACCAAATTATCAAGAGGTTATTCTAAA
64886550 TATAAGTTCTAATTAAACCATTCATTATCTCATCATTTTCATAGAAAATGA
66 TATAAGTTCTAATTAAACCATTCATTATCTCATCATTTTCATAGAAAATGA
64886601 A
1 A
64886602 TTCTAATTTT
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 109 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (116 bp):
ACTATAACACACTTTTCTAGTAAGTCATGGTAAGTATTACCAAATTATCAAGAGGTTATTCTAAA
TATAAGTTCTAATTAAACCATTCATTATCTCATCATTTTCATAGAAAATGA
Found at i:64891396 original size:40 final size:40
Alignment explanation
Indices: 64891341--64891493 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
64891331 AAAGCTGCTG
** * * *
64891341 AATGCACATGTGTGCCCCTGTTTGTACTTTGGTACCCCTA
1 AATGCACATACGTGCCCCTATTTGCACTTTGGTGCCCCTA
* * ** *
64891381 AATGCACAGACGTGCCCCTATATGCACTTCAGTGCCCCTG
1 AATGCACATACGTGCCCCTATTTGCACTTTGGTGCCCCTA
*
64891421 AATGCACATCCGTGCCCCTATTTGCACTTTGGTGCCCCTA
1 AATGCACATACGTGCCCCTATTTGCACTTTGGTGCCCCTA
** * *
64891461 AATGCACATTTGTGCCCCTGTTTGAACTTTGGT
1 AATGCACATACGTGCCCCTATTTGCACTTTGGT
64891494 TCCATTAATC
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.19, C:0.30, G:0.20, T:0.31
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTATTTGCACTTTGGTGCCCCTA
Found at i:64891398 original size:20 final size:20
Alignment explanation
Indices: 64891375--64891479 Score: 104
Period size: 20 Copynumber: 5.2 Consensus size: 20
64891365 TACTTTGGTA
**
64891375 CCCCTAAATGCACAGACGTG
1 CCCCTAAATGCACATTCGTG
*
64891395 CCCCTATATGCAC-TTCAGTG
1 CCCCTAAATGCACATTC-GTG
* *
64891415 CCCCTGAATGCACATCCGTG
1 CCCCTAAATGCACATTCGTG
** * *
64891435 CCCCTATTTGCACTTTGGTG
1 CCCCTAAATGCACATTCGTG
*
64891455 CCCCTAAATGCACATTTGTG
1 CCCCTAAATGCACATTCGTG
64891475 CCCCT
1 CCCCT
64891480 GTTTGAACTT
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
19 1 0.01
20 64 0.96
21 2 0.03
ACGTcount: A:0.20, C:0.36, G:0.17, T:0.27
Consensus pattern (20 bp):
CCCCTAAATGCACATTCGTG
Found at i:64905669 original size:34 final size:34
Alignment explanation
Indices: 64905618--64905702 Score: 100
Period size: 34 Copynumber: 2.5 Consensus size: 34
64905608 GTAGTGGAAA
* *
64905618 CAGTCTGGGCCTAAGCCC-TTAACAGTAGCAATAT
1 CAGTGTGGGCCTAAGCCCATT-ACAGTAACAATAT
* * *
64905652 CAGTGTGGGCCTCAGCCCATTACGGTAACAGTAT
1 CAGTGTGGGCCTAAGCCCATTACAGTAACAATAT
*
64905686 CAGTGTGGGCCTTAGCC
1 CAGTGTGGGCCTAAGCC
64905703 TAATTTAGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
34 42 0.95
35 2 0.05
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.24
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGCCCATTACAGTAACAATAT
Found at i:64914545 original size:78 final size:77
Alignment explanation
Indices: 64914463--64914655 Score: 215
Period size: 78 Copynumber: 2.5 Consensus size: 77
64914453 ATAGAAAAAG
* * * *
64914463 AATCCTGAAACATAATTATTCAATTGATTTCTATTTGAAATAAGAAATTGAACAAATCCTATTAA
1 AATCCTGAAACAGAATTGTTCAATTGATTTCTATTTGAAACAA-AAATAGAACAAATCCTATTAA
*
64914528 ACAGCGGGAATAA
65 ACAGCAGGAATAA
* * * * * * *
64914541 AATCCTAAAACAGAATTGTTTAATAGATTTTTTGTTTGAAACAAAAATAGAACAAATCTTGTTAA
1 AATCCTGAAACAGAATTGTTCAATTGA-TTTCTATTTGAAACAAAAATAGAACAAATCCTATTAA
**
64914606 ATGGCAGGAATAA
65 ACAGCAGGAATAA
* *
64914619 AATCCTGAAATAGAATTGTTCAGTTGAATTTCTATTT
1 AATCCTGAAACAGAATTGTTCAATTG-ATTTCTATTT
64914656 ACAAACAATA
Statistics
Matches: 92, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
78 78 0.85
79 14 0.15
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (77 bp):
AATCCTGAAACAGAATTGTTCAATTGATTTCTATTTGAAACAAAAATAGAACAAATCCTATTAAA
CAGCAGGAATAA
Found at i:64919724 original size:10 final size:10
Alignment explanation
Indices: 64919709--64919733 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
64919699 TGGAACTTTT
64919709 AAATTCTATC
1 AAATTCTATC
64919719 AAATTCTATC
1 AAATTCTATC
64919729 AAATT
1 AAATT
64919734 TACCAAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTCTATC
Found at i:64923340 original size:48 final size:48
Alignment explanation
Indices: 64923276--64923640 Score: 437
Period size: 48 Copynumber: 7.6 Consensus size: 48
64923266 GTGCTAAATA
* * * * *
64923276 TGCCTGCGTAAGACCATTTATAGGACATGGCAAT-GGCCATGATATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGC-ATCGGCAATGATATATG
* * *
64923324 TGCCTGTGTAATACCATGTCTAGGACATGGCATCGGCGATGATATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
* * * * *
64923372 TGACTGTGAAAGACTATGTCTGGGACATGGCATCGGCGATGAAATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
* *
64923420 TGCCTGTGTAAGACCATGTCTGGAACATGGCATCAGCAATGATATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
* *
64923468 TGCCTGTGTAAGACCATGTCTGGGACATGGCGTTGGCAATGATATATG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
* *
64923516 TGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
* *** * *
64923564 TCCCAACGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTG
1 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
** * *
64923612 -GATTCATGTAAGACCATGTCGGGGACATG
1 TGCCT-GTGTAAGACCATGTCTGGGACATG
64923641 CCATTGGTAC
Statistics
Matches: 279, Mismatches: 36, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
47 2 0.01
48 277 0.99
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATG
Found at i:64924951 original size:19 final size:19
Alignment explanation
Indices: 64924906--64924955 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
64924896 GACCTGGGGA
*
64924906 CACAGGCGTGTCAAAGGCG
1 CACAGGCATGTCAAAGGCG
** * *
64924925 CATGGGCATGTCAAGGGTG
1 CACAGGCATGTCAAAGGCG
64924944 CACAGGCATGTC
1 CACAGGCATGTC
64924956 CTTGTGTCCA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.16
Consensus pattern (19 bp):
CACAGGCATGTCAAAGGCG
Found at i:64925543 original size:67 final size:66
Alignment explanation
Indices: 64925404--64925577 Score: 212
Period size: 67 Copynumber: 2.7 Consensus size: 66
64925394 TGTGTTGACT
* **
64925404 TTTC-ATTCTTGTATCAGCTTCAATTATTTACATATATT--ATTATGTATCTTATTTCGCATTGA
1 TTTCAATTCTTGTATCAGCTTCAATTATTTATATATATTGCATTATGTATCCCATTTCGCATTGA
64925466 A
66 A
* * * * * *
64925467 TTTCCATTCTTGTATC-GATTTTAGTTATTTATATATATCTGCATTATGTATCCCATTTTGTATT
1 TTTCAATTCTTGTATCAG-CTTCAATTATTTATATATAT-TGCATTATGTATCCCATTTCGCATT
64925531 GAA
64 GAA
64925534 TTTCAATTCTTGTATCAGCTTCAATTATTTATATATATTTGCAT
1 TTTCAATTCTTGTATCAGCTTCAATTATTTATATATA-TTGCAT
64925578 GAACTTGATT
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
63 5 0.05
64 27 0.29
65 1 0.01
67 57 0.62
68 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.52
Consensus pattern (66 bp):
TTTCAATTCTTGTATCAGCTTCAATTATTTATATATATTGCATTATGTATCCCATTTCGCATTGA
A
Found at i:64933436 original size:46 final size:45
Alignment explanation
Indices: 64933369--64933531 Score: 166
Period size: 46 Copynumber: 3.5 Consensus size: 45
64933359 TGTAACCCGC
*
64933369 CCATAAGTGAACTCGGACTCAACCCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
64933415 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * *
64933461 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
**
64933508 CCATAAGTGAACTCAAACTCAACT
1 CCATAAGTGAACTCGGACTCAACT
64933532 TAACAAGTTC
Statistics
Matches: 93, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 56 0.60
47 34 0.37
48 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:64938128 original size:80 final size:80
Alignment explanation
Indices: 64938030--64938259 Score: 451
Period size: 80 Copynumber: 2.9 Consensus size: 80
64938020 CATATTGAGA
*
64938030 AAATATTCTTTTATTCTTTCCATTTCATTCATAATAATACTATACAAATAATTATTCTTAGATTC
1 AAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACAAATAATTATTCTTAGATTC
64938095 TTTTGACTTTCTTTC
66 TTTTGACTTTCTTTC
64938110 AAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACAAATAATTATTCTTAGATTC
1 AAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACAAATAATTATTCTTAGATTC
64938175 TTTTGACTTTCTTTC
66 TTTTGACTTTCTTTC
64938190 AAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACAAATAATTATTCTTAGATTC
1 AAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACAAATAATTATTCTTAGATTC
64938255 TTTTG
66 TTTTG
64938260 CTCTTTGGAC
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 149 1.00
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.51
Consensus pattern (80 bp):
AAATATTCTTTTATTCTTTCCATTTCATTCATAATCATACTATACAAATAATTATTCTTAGATTC
TTTTGACTTTCTTTC
Found at i:64940103 original size:28 final size:28
Alignment explanation
Indices: 64940056--64940140 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
64940046 GTGAGCATGA
* *
64940056 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
64940084 ATA-AAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
64940112 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
64940140 A
1 A
64940141 GATACAAGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 7 0.14
28 37 0.74
29 6 0.12
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:64944354 original size:8 final size:8
Alignment explanation
Indices: 64944341--64944383 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
64944331 GTAGATTGGC
64944341 AAAAGCCG
1 AAAAGCCG
*
64944349 AAAAGCTG
1 AAAAGCCG
*
64944357 AAATGCCG
1 AAAAGCCG
*
64944365 AAATGCCG
1 AAAAGCCG
*
64944373 AAAAGCTG
1 AAAAGCCG
64944381 AAA
1 AAA
64944384 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.49, C:0.19, G:0.23, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:64944639 original size:29 final size:29
Alignment explanation
Indices: 64944606--64944682 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
64944596 TGAATGTGAC
* *
64944606 TGGGCCTTATGGGCCATATAAATTTAATT
1 TGGGCCTAATGGGCCATATAAAGTTAATT
* *
64944635 TGGGCCTAATGGGCCATATATAGTTGATT
1 TGGGCCTAATGGGCCATATAAAGTTAATT
64944664 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
64944683 GAATATGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGTTAATT
Found at i:64944691 original size:29 final size:28
Alignment explanation
Indices: 64944593--64944707 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 28
64944583 GTGAGCATGA
* * *
64944593 ATATGAATGTGACTGGGCCTTATGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
* * *
64944621 ATATAAATTTAATTTGGGCCTAATGGGCC
1 ATATGAATATGA-TTGGGCCTAATGGGCC
64944650 ATAT--ATAGTTGATTTGGGCCTAATGGGCC
1 ATATGAATA--TGA-TTGGGCCTAATGGGCC
* *
64944679 ATATGAATATGATTGGGCTTAATAGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
64944707 A
1 A
64944708 AATACAGGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
27 2 0.03
28 24 0.33
29 44 0.60
31 3 0.04
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:64948734 original size:47 final size:47
Alignment explanation
Indices: 64948683--64948999 Score: 501
Period size: 47 Copynumber: 6.7 Consensus size: 47
64948673 TTAGGATTCT
* * *
64948683 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
64948730 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64948777 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
64948824 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
64948871 ATGTGATGAATGTGAAAGTGTATATATGTTATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
64948918 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
64948965 ACGTGATGGATGTGAAAGTGTGTAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
64949000 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 252 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:64949174 original size:37 final size:37
Alignment explanation
Indices: 64949118--64949196 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
64949108 CCGAGCTCTA
* * *
64949118 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
64949155 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64949192 AAGAC
1 AAGAC
64949197 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64959808 original size:27 final size:28
Alignment explanation
Indices: 64959728--64959821 Score: 127
Period size: 27 Copynumber: 3.4 Consensus size: 28
64959718 AGATTGGCAT
* * * *
64959728 TAAGTGTGCGGGTTTAAATTGTACAGCAC
1 TAAGTGTGCGAGTTT-GATTATATAGCAC
64959757 TAAGTGTGCGAGTTTGATTATATAGCAC
1 TAAGTGTGCGAGTTTGATTATATAGCAC
64959785 TAAGTGTGCGAG-TTGATTATATAGCAC
1 TAAGTGTGCGAGTTTGATTATATAGCAC
*
64959812 TGAGTGTGCG
1 TAAGTGTGCG
64959822 GACTTAATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.40
28 22 0.37
29 14 0.23
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
TAAGTGTGCGAGTTTGATTATATAGCAC
Found at i:64959835 original size:29 final size:27
Alignment explanation
Indices: 64959752--64959835 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
64959742 TAAATTGTAC
* *
64959752 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
64959780 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
64959807 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
64959836 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:64973081 original size:40 final size:40
Alignment explanation
Indices: 64973026--64973247 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
64973016 TACTCGGATG
*
64973026 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
64973066 ATATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
64973106 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
64973146 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* ** * *
64973186 GTATCCGGGCTAAAACTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* * *
64973226 ATATTC-GGCTAATTCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
64973248 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 12 0.07
40 147 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:64978658 original size:41 final size:40
Alignment explanation
Indices: 64978531--64978675 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
64978521 CTCGCACAAG
* * * * *
64978531 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
64978571 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
64978611 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
64978652 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
64978676 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:64986570 original size:39 final size:40
Alignment explanation
Indices: 64986525--64986692 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
64986515 CGGGGTTTAG
* * *
64986525 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
64986564 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
64986604 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
64986644 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
64986685 CCGGATAT
1 CCGGATAT
64986693 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:64986675 original size:41 final size:40
Alignment explanation
Indices: 64986548--64986692 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
64986538 CTCGCACAAG
* * * * *
64986548 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
64986588 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
64986628 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
64986669 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
64986693 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:64991432 original size:24 final size:26
Alignment explanation
Indices: 64991403--64991452 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
64991393 TCTTGTTTTA
* *
64991403 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTAAAAT
64991427 ATATTTGATTTATTATATTTTAAAAT
1 ATATTTGATTTATTATATTTTAAAAT
64991453 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTAAAAT
Found at i:64999336 original size:19 final size:19
Alignment explanation
Indices: 64999298--64999336 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
64999288 GTATATGCAA
*
64999298 CTTATTAAAAAAGATGCAT
1 CTTATTAAAAAAGATACAT
*
64999317 CTTATTAAAAATGATACAT
1 CTTATTAAAAAAGATACAT
64999336 C
1 C
64999337 GGGGCTTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (19 bp):
CTTATTAAAAAAGATACAT
Found at i:65002279 original size:31 final size:31
Alignment explanation
Indices: 65002210--65002279 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
65002200 AAAAATTGTT
*
65002210 ATTTTAGCCACTCTTAGTAGATAAGTTGTCA
1 ATTTTAGTCACTCTTAGTAGATAAGTTGTCA
*
65002241 ATTTTAGTCACTC-TCGTTAGATAAGTTGTCA
1 ATTTTAGTCACTCTTAG-TAGATAAGTTGTCA
65002272 ATTTTAGT
1 ATTTTAGT
65002280 TATTCTACTG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 2 0.06
31 34 0.94
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (31 bp):
ATTTTAGTCACTCTTAGTAGATAAGTTGTCA
Found at i:65002368 original size:31 final size:31
Alignment explanation
Indices: 65002330--65002397 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
65002320 CGACTTAGAC
*
65002330 TGACTAAAATTGACAACTTATCCAATAAGAG
1 TGACTAAAATTGACAACTTATCCAACAAGAG
*
65002361 TGACTAAAATTGACAACTTATCTAACAAGAG
1 TGACTAAAATTGACAACTTATCCAACAAGAG
65002392 TGACTA
1 TGACTA
65002398 CAATAACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.26
Consensus pattern (31 bp):
TGACTAAAATTGACAACTTATCCAACAAGAG
Found at i:65003138 original size:2 final size:2
Alignment explanation
Indices: 65003120--65003584 Score: 266
Period size: 2 Copynumber: 241.0 Consensus size: 2
65003110 CACACCTAAA
* * * *
65003120 TC TC CC TC TC CC TC TC TC TC -C TC CC TC TC CC TC TC TC TGC -C
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T-C TC
* * * * * * * * *
65003161 AC TC CC TC TC CC TC CC TC CC TC GC TC CC TC CC TC CC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * * *
65003203 -C T- TC CC TC CC T- TC -C TC GC TC TA TC CC TC CC TC GC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * *
65003241 CC TC TC TC TC CC TC TC TC TC TC TC TC -C CC CC TC TC CC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * * *
65003282 TC CC TC TT TC TC TC -C ATC TC TC CC CC TT TC TC TC CC TC TT TC
1 TC TC TC TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * *
65003324 CC TC TT TC CC TC -C TC TC CC TC TC T- TC TC TC TC TC CC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * *
65003364 TC CC TC T- TC TC TC TC TC TC CC TC TC CC TC CC TC TC -C CC CC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
65003404 TC TC TC TC TC TC TC TC TC TC TC TC TC T- TC -C TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * *
65003444 TC -C CC CC TC TC CC CC TC TC TC TC TC TC -C CC CC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * *
65003484 TC -C CC CC TC TC TC TC TC TC CC CC TC TC TC TC TC TC CC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * *
65003525 CC TC TC TC TC TT TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
65003567 T- TC -C TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC
65003585 AAAATAAAGT
Statistics
Matches: 350, Mismatches: 92, Indels: 42
0.72 0.19 0.09
Matches are distributed among these distances:
1 19 0.05
2 329 0.94
3 2 0.01
ACGTcount: A:0.01, C:0.59, G:0.01, T:0.39
Consensus pattern (2 bp):
TC
Found at i:65003155 original size:8 final size:8
Alignment explanation
Indices: 65003120--65003584 Score: 311
Period size: 8 Copynumber: 56.5 Consensus size: 8
65003110 CACACCTAAA
65003120 TCTCCCTC
1 TCTCCCTC
65003128 TC-CCTCTC
1 TCTCC-CTC
*
65003136 TCTCCTCCC
1 TCTCC-CTC
65003145 TCTCCCTC
1 TCTCCCTC
*
65003153 TCTCTGC-C
1 TCTC-CCTC
*
65003161 ACT-CC-C
1 TCTCCCTC
65003167 TCTCCCTC
1 TCTCCCTC
*
65003175 CCTCCCTC
1 TCTCCCTC
*
65003183 GCTCCCTC
1 TCTCCCTC
*
65003191 CCTCCCTC
1 TCTCCCTC
*
65003199 TCTCCTTC
1 TCTCCCTC
*
65003207 CCTCCCT-
1 TCTCCCTC
*
65003214 TCCTCGCTC
1 T-CTCCCTC
*
65003223 TATCCCTC
1 TCTCCCTC
* *
65003231 CCTCGCTC
1 TCTCCCTC
65003239 TC-CCTCTC
1 TCTCC-CTC
65003247 TCTCCCTC
1 TCTCCCTC
*
65003255 TCTCTCTC
1 TCTCCCTC
*
65003263 TCTCCCCCC
1 TCT-CCCTC
65003272 TCTCCCTC
1 TCTCCCTC
65003280 TCTCCCTC
1 TCTCCCTC
65003288 TTTCTCTCCATC
1 --TCTC-CC-TC
65003300 TCTCCCCCTTTC
1 TCT--CCC--TC
65003312 TCTCCCTC
1 TCTCCCTC
*
65003320 TTTCCCTC
1 TCTCCCTC
*
65003328 TTTCCCTCC
1 TCTCCCT-C
65003337 TCTCCCTC
1 TCTCCCTC
*
65003345 TCTTCTCTC
1 TC-TCCCTC
65003354 TCTCCCTC
1 TCTCCCTC
65003362 TCTCCCTC
1 TCTCCCTC
*
65003370 TTCTCTCTC
1 -TCTCCCTC
65003379 TCTCCCTC
1 TCTCCCTC
65003387 TCCCTCCCTC
1 T--CTCCCTC
*
65003397 TC-CCCCC
1 TCTCCCTC
*
65003404 TCTCTCTC
1 TCTCCCTC
*
65003412 TCTCTCTC
1 TCTCCCTC
*
65003420 TCTCTCTC
1 TCTCCCTC
*
65003428 TCTTCCTC
1 TCTCCCTC
*
65003436 TCTCTCTC
1 TCTCCCTC
*
65003444 TC-CCCCC
1 TCTCCCTC
*
65003451 TCTCCCCC
1 TCTCCCTC
*
65003459 TCTCTCTC
1 TCTCCCTC
65003467 TCTCCC-C
1 TCTCCCTC
* *
65003474 CCTCTCTC
1 TCTCCCTC
*
65003482 TCTCCCCCC
1 TCT-CCCTC
*
65003491 TCTCTCTC
1 TCTCCCTC
*
65003499 TCTCCCCC
1 TCTCCCTC
*
65003507 TCTCTCTC
1 TCTCCCTC
65003515 TCTCCCTC
1 TCTCCCTC
65003523 TC-CCTCTC
1 TCTCC-CTC
**
65003531 TCTCTTTC
1 TCTCCCTC
65003539 TCTCCCTC
1 TCTCCCTC
65003547 TCTCTCTCTC
1 TCTC-C-CTC
*
65003557 TCTCTCTC
1 TCTCCCTC
*
65003565 TCTTCCTC
1 TCTCCCTC
*
65003573 TCTCTCTC
1 TCTCCCTC
65003581 TCTC
1 TCTC
65003585 AAAATAAAGT
Statistics
Matches: 361, Mismatches: 66, Indels: 60
0.74 0.14 0.12
Matches are distributed among these distances:
6 4 0.01
7 23 0.06
8 248 0.69
9 49 0.14
10 25 0.07
11 4 0.01
12 8 0.02
ACGTcount: A:0.01, C:0.59, G:0.01, T:0.39
Consensus pattern (8 bp):
TCTCCCTC
Found at i:65004812 original size:26 final size:26
Alignment explanation
Indices: 65004775--65004827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
65004765 AGCATAAAGC
65004775 ATAGTAAATAGGAAAGTGTTGATGTT
1 ATAGTAAATAGGAAAGTGTTGATGTT
*
65004801 ATAGTAACTAGGAAAGTGTTGATGTT
1 ATAGTAAATAGGAAAGTGTTGATGTT
65004827 A
1 A
65004828 GCAACACGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (26 bp):
ATAGTAAATAGGAAAGTGTTGATGTT
Found at i:65008004 original size:49 final size:47
Alignment explanation
Indices: 65007951--65008227 Score: 183
Period size: 46 Copynumber: 5.9 Consensus size: 47
65007941 GACTTTTATA
* *
65007951 TATCGAGGCCGATGCCATGTCCCAGACAGGTCTTGCACTGGCTCTCATT
1 TATCGAGGCCGATG-CATGTCCCAGACAGGTCTTACACTGGCTCTC-TG
* ** * * *
65008000 TATCGATGTTGATGCCATGTCCCAGAAAGGTCTTACACTGACAC-C--
1 TATCGAGGCCGATG-CATGTCCCAGACAGGTCTTACACTGGCTCTCTG
* * * * * * * *
65008045 TAAC-AAGCTGACGCCATGTCCTAGACAGGTCTTACACTAGCT-TGTA
1 TATCGAGGCCGATG-CATGTCCCAGACAGGTCTTACACTGGCTCTCTG
* *
65008091 TATCCCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-G
1 TAT--CGAGGCCGATGCATGTCCCAGACAGGTCTTACACTGGCTCTCTG
* * ** * * *
65008139 TCTCAATACAGATGCATGTCCCAGACATGTCTTACACTGGCACTCATG
1 TATCGAGGCCGATGCATGTCCCAGACAGGTCTTACACTGGCTCTC-TG
* * *
65008187 T-T-GTGGCCGATGCATGTCCCAGACATGTCTTACATTGGCTC
1 TATCGAGGCCGATGCATGTCCCAGACAGGTCTTACACTGGCTC
65008228 ACATACCACC
Statistics
Matches: 180, Mismatches: 39, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
44 30 0.17
45 3 0.02
46 70 0.39
47 1 0.01
48 32 0.18
49 44 0.24
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (47 bp):
TATCGAGGCCGATGCATGTCCCAGACAGGTCTTACACTGGCTCTCTG
Found at i:65025700 original size:6 final size:6
Alignment explanation
Indices: 65025679--65025794 Score: 67
Period size: 6 Copynumber: 18.8 Consensus size: 6
65025669 TATTAGAACT
* * *
65025679 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * * *
65025728 AAAATC AGAATT AGAATT AG-GTGAC AGAATC AAAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC
*
65025778 AGAATC AGAATT AGAAT
1 AGAATC AGAATC AGAAT
65025795 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
5 4 0.05
6 69 0.82
7 8 0.10
8 3 0.04
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:65025734 original size:31 final size:31
Alignment explanation
Indices: 65025691--65025788 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
65025681 AATCAAAATG
* *
65025691 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAAAATCAGAATCAGGTAACAGAATC
* * *
65025722 AGAATCAAAATCAGAATTA-G-AATTAG-GTGAC
1 AGAATCAAAATCAGAATCAGGTAA-CAGAAT--C
*
65025753 AGAATCAAAATCAGTATCAGGTAACAGAATC
1 AGAATCAAAATCAGAATCAGGTAACAGAATC
65025784 AGAAT
1 AGAAT
65025789 TAGAATGTGA
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
29 2 0.04
30 3 0.06
31 41 0.79
32 3 0.06
33 3 0.06
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGGTAACAGAATC
Found at i:65025758 original size:25 final size:25
Alignment explanation
Indices: 65025730--65025794 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
65025720 TCAGAATCAA
* *
65025730 AATCAGAATTAGAATTAGGTGACAG
1 AATCAGAATTAGAATCAGGTAACAG
* * *
65025755 AATCAAAATCAGTATCAGGTAACAG
1 AATCAGAATTAGAATCAGGTAACAG
65025780 AATCAGAATTAGAAT
1 AATCAGAATTAGAAT
65025795 GTGAATGCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (25 bp):
AATCAGAATTAGAATCAGGTAACAG
Found at i:65025772 original size:37 final size:37
Alignment explanation
Indices: 65025679--65025785 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
65025669 TATTAGAACT
*
65025679 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
* * * *
65025716 AGAATCAGAATCAAAATCAGAATTAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
*
65025753 AGAATCAAAATCAGTATCAGGTAA-CAGAATCAG
1 AGAATCAAAATCAGAATCA-G-AATCAGAATCAG
65025786 AATTAGAATG
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
37 48 0.83
38 8 0.14
39 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.20, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:65025961 original size:27 final size:26
Alignment explanation
Indices: 65025911--65025997 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 26
65025901 CAGCATGGCT
* * ** *
65025911 ACCAGAATAGATATTGTGATAGAGTC
1 ACCAGAACAAATATTGTGGCAGAGCC
*
65025937 ACTAGATACAAATATTGTGGCAGAGCC
1 ACCAGA-ACAAATATTGTGGCAGAGCC
* *
65025964 ACCAGAACAGATATTTGTGGCATAGCC
1 ACCAGAACAAATA-TTGTGGCAGAGCC
65025991 ACCAGAA
1 ACCAGAA
65025998 TTAGATAATG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (26 bp):
ACCAGAACAAATATTGTGGCAGAGCC
Found at i:65026009 original size:27 final size:27
Alignment explanation
Indices: 65025948--65026019 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
65025938 CTAGATACAA
*
65025948 ATAT-TGTGGCAGAGCCACCAGAACAG
1 ATATATGTGGCAAAGCCACCAGAACAG
* * *
65025974 ATATTTGTGGCATAGCCACCAGAATTAG
1 ATATATGTGGCAAAGCCACCAGAA-CAG
65026002 ATA-ATGTGGCAAAGCCAC
1 ATATATGTGGCAAAGCCAC
65026020 TTAACAGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.10
27 31 0.77
28 5 0.12
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
ATATATGTGGCAAAGCCACCAGAACAG
Found at i:65026225 original size:22 final size:22
Alignment explanation
Indices: 65026177--65026235 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
65026167 GTAAATACGT
*
65026177 TTGGCACTAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
65026199 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
65026221 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
65026236 CGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:65026637 original size:54 final size:54
Alignment explanation
Indices: 65026570--65026690 Score: 165
Period size: 54 Copynumber: 2.2 Consensus size: 54
65026560 AGGGGCAAAA
*
65026570 TAGTAATTTTACCTCAC-GAGGGTATCTC-GTTAATTCTACCCTACAGGGGTATTT
1 TAGTAATTCTACCTCACAG-GGGTATCTCAG-TAATTCTACCCTACAGGGGTATTT
* *
65026624 TAGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
1 TAGTAATTCTACCTCACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
* *
65026678 CAATAATTCTACC
1 TAGTAATTCTACC
65026691 CTAAATGGGT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 58 0.97
55 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (54 bp):
TAGTAATTCTACCTCACAGGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:65026706 original size:27 final size:27
Alignment explanation
Indices: 65026600--65026712 Score: 172
Period size: 27 Copynumber: 4.2 Consensus size: 27
65026590 GGTATCTCGT
* *
65026600 TAATTCTACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
65026627 TAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAA
65026654 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
65026681 TAATTCTACCCTAAATGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
65026708 TAATT
1 TAATT
65026713 TTGTAAATCG
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:65026727 original size:27 final size:27
Alignment explanation
Indices: 65026697--65026928 Score: 177
Period size: 27 Copynumber: 8.6 Consensus size: 27
65026687 TACCCTAAAT
* **
65026697 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
65026724 GGGTAAAAT-AGTAATTCTATAAATCGA
1 GGGT-ATTTCAGTAATTTTACAAATCGA
* * *
65026751 GGGTACTTT-GGTAATTTTACAAGTCAA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
* *
65026778 GGATATTTCAGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
65026805 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
65026831 GGGGTATTTTGGTAATTTTACAAA-CTAA
1 -GGGTATTTCAGTAATTTTACAAATC-GA
* ** *
65026859 GGATATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
65026885 GGGTATTTTGGTAATTTTGCTAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
65026912 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
65026929 GGTAAACTAA
Statistics
Matches: 169, Mismatches: 29, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
26 27 0.16
27 139 0.82
28 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:65030594 original size:27 final size:27
Alignment explanation
Indices: 65030564--65030618 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
65030554 GTGGCTATGG
65030564 TTGATGATATGCTTATGTATTGTGTGT
1 TTGATGATATGCTTATGTATTGTGTGT
65030591 TTGATGATATGCTTATGTATTGTGTGT
1 TTGATGATATGCTTATGTATTGTGTGT
65030618 T
1 T
65030619 ATGTATATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.04, G:0.25, T:0.53
Consensus pattern (27 bp):
TTGATGATATGCTTATGTATTGTGTGT
Found at i:65042069 original size:28 final size:28
Alignment explanation
Indices: 65042007--65042103 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
65041997 TATTAAGTCT
*
65042007 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
65042034 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * * *
65042062 GCACACTTAGTGCTGTACAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
65042091 GCACACTTAGTGC
1 GCACACTTAGTGC
65042104 CAATCTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:65042567 original size:12 final size:12
Alignment explanation
Indices: 65042550--65042576 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
65042540 TGGGCATACT
65042550 TATGTATATATA
1 TATGTATATATA
65042562 TATGTATATATA
1 TATGTATATATA
65042574 TAT
1 TAT
65042577 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:65047371 original size:5 final size:5
Alignment explanation
Indices: 65047361--65047393 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
65047351 GTAGATGAAG
*
65047361 AGAAA AGAAA AGAAA AGAAA AG-AA GGAAA AGAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAA
65047394 GAAAAAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:65048318 original size:19 final size:18
Alignment explanation
Indices: 65048281--65048324 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
65048271 ATACATACAG
65048281 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
65048298 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
65048317 TACTAATT
1 TAATAATT
65048325 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:65050765 original size:20 final size:20
Alignment explanation
Indices: 65050740--65050778 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
65050730 TAAACGTGGT
65050740 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
65050760 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
65050779 TATGCACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:65050780 original size:11 final size:11
Alignment explanation
Indices: 65050744--65050789 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
65050734 CGTGGTATGT
65050744 ATGATATGCAC
1 ATGATATGCAC
* *
65050755 ATGACATG--T
1 ATGATATGCAC
65050764 ATGATATGCAC
1 ATGATATGCAC
65050775 ATGATATGCAC
1 ATGATATGCAC
65050786 ATGA
1 ATGA
65050790 GGTATTCATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 7 0.24
11 22 0.76
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:65050866 original size:24 final size:24
Alignment explanation
Indices: 65050839--65051079 Score: 331
Period size: 24 Copynumber: 10.0 Consensus size: 24
65050829 GGAGGAAGTG
65050839 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65050863 CAAAAGTGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65050887 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
65050911 TAAAAGGGCTTCTGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65050935 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
65050959 TAAAAGGGCTTCTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65050983 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
65051007 TAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * * *
65051031 TAAAAGGGCTTTTGCCTCAGTTTT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
65051055 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
65051080 ATGATAAAGT
Statistics
Matches: 193, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
24 184 0.95
25 9 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:65053186 original size:29 final size:29
Alignment explanation
Indices: 65053144--65053249 Score: 151
Period size: 29 Copynumber: 3.7 Consensus size: 29
65053134 TCTTTAATCT
*
65053144 ATCCCTTTTCATATTCGATGGTTGTCACC
1 ATCCCTTTCCATATTCGATGGTTGTCACC
**
65053173 AT-CCTTTACCATATTCGATGGTCATCACC
1 ATCCCTTT-CCATATTCGATGGTTGTCACC
*
65053202 ATCCCTTTTCATATTCGATGGTTGTCACC
1 ATCCCTTTCCATATTCGATGGTTGTCACC
*
65053231 ATCCCTTTCCACATTCGAT
1 ATCCCTTTCCATATTCGAT
65053250 AGGCGTCGAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
28 5 0.07
29 57 0.85
30 5 0.07
ACGTcount: A:0.20, C:0.30, G:0.11, T:0.39
Consensus pattern (29 bp):
ATCCCTTTCCATATTCGATGGTTGTCACC
Found at i:65057502 original size:19 final size:20
Alignment explanation
Indices: 65057478--65057515 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65057468 GGTACCACCA
65057478 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
65057497 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
65057516 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:65057855 original size:93 final size:93
Alignment explanation
Indices: 65057745--65057915 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65057735 GCCCCTAAGT
* *
65057745 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65057810 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
65057838 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65057903 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65057916 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65057912 original size:46 final size:46
Alignment explanation
Indices: 65057740--65057912 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
65057730 AACCCGCCCC
* * * *
65057740 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
65057786 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
65057834 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
65057879 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65057913 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:65065088 original size:19 final size:20
Alignment explanation
Indices: 65065064--65065101 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65065054 GGTACCACCA
65065064 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
65065083 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
65065102 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:65065492 original size:94 final size:94
Alignment explanation
Indices: 65065331--65065502 Score: 292
Period size: 94 Copynumber: 1.8 Consensus size: 94
65065321 GCCCCTAAGT
*
65065331 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
65065396 CGAGTTCGGATGCCTAGTTACATTCTCAC
66 CGAGTTCGGATGCCTAGTTACATTCTCAC
* * *
65065425 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
65065489 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
65065503 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.03
94 71 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (94 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCTCAC
Found at i:65065497 original size:46 final size:46
Alignment explanation
Indices: 65065326--65065499 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
65065316 AACCCGCCCC
* * *
65065326 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCA
* * * *
65065372 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
65065421 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
65065466 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65065500 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
44 7 0.07
45 5 0.05
46 58 0.54
48 29 0.27
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:65067004 original size:48 final size:47
Alignment explanation
Indices: 65066939--65067107 Score: 257
Period size: 48 Copynumber: 3.5 Consensus size: 47
65066929 TGATCCCGTA
65066939 TAAGACCATGTCTGGGACATGGCATCAGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATC-GCATCGTTATGTGAGCCAGTG
* * *
65066987 TAAGACCATATCCGGGACATGGCATTGGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCA-TCGCATCGTTATGTGAGCCAGTG
* *
65067035 TAAGACCATGTTTGGGACATGGCATCGACATGGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCG-CATCGTTATGTGAGCCAGTG
*
65067083 TAAGACCATGTTTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
65067108 TAGCGAGAGG
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
47 2 0.02
48 108 0.97
49 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGCATCGTTATGTGAGCCAGTG
Found at i:65080898 original size:15 final size:15
Alignment explanation
Indices: 65080873--65080908 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
65080863 TTAAAAAAGG
65080873 AAAACAAATGAATCTT
1 AAAA-AAATGAATCTT
*
65080889 AAAAAAATGAGTCTT
1 AAAAAAATGAATCTT
65080904 AAAAA
1 AAAAA
65080909 CTTAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.22
Consensus pattern (15 bp):
AAAAAAATGAATCTT
Found at i:65090692 original size:27 final size:26
Alignment explanation
Indices: 65090644--65090703 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
65090634 GCGAAGCTGC
*
65090644 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
65090671 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
65090697 CAGATAT
1 CAGATAT
65090704 ATATATGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65091000 original size:8 final size:8
Alignment explanation
Indices: 65090987--65091065 Score: 122
Period size: 8 Copynumber: 9.9 Consensus size: 8
65090977 AGTGGGCTCG
65090987 TTGGCCCA
1 TTGGCCCA
*
65090995 TTGGCCCG
1 TTGGCCCA
65091003 TTGGCCCA
1 TTGGCCCA
*
65091011 TTGGCCCG
1 TTGGCCCA
65091019 TTGGCCCA
1 TTGGCCCA
*
65091027 TTGGCCCG
1 TTGGCCCA
65091035 TTGGCCCA
1 TTGGCCCA
*
65091043 TTGGCCCG
1 TTGGCCCA
65091051 TTGGCCCA
1 TTGGCCCA
65091059 TTGGCCC
1 TTGGCCC
65091066 GTTTTCAACC
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 63 1.00
ACGTcount: A:0.06, C:0.38, G:0.30, T:0.25
Consensus pattern (8 bp):
TTGGCCCA
Found at i:65091006 original size:16 final size:16
Alignment explanation
Indices: 65090985--65091068 Score: 168
Period size: 16 Copynumber: 5.2 Consensus size: 16
65090975 AAAGTGGGCT
65090985 CGTTGGCCCATTGGCC
1 CGTTGGCCCATTGGCC
65091001 CGTTGGCCCATTGGCC
1 CGTTGGCCCATTGGCC
65091017 CGTTGGCCCATTGGCC
1 CGTTGGCCCATTGGCC
65091033 CGTTGGCCCATTGGCC
1 CGTTGGCCCATTGGCC
65091049 CGTTGGCCCATTGGCC
1 CGTTGGCCCATTGGCC
65091065 CGTT
1 CGTT
65091069 TTCAACCCAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 68 1.00
ACGTcount: A:0.06, C:0.37, G:0.31, T:0.26
Consensus pattern (16 bp):
CGTTGGCCCATTGGCC
Found at i:65095414 original size:39 final size:40
Alignment explanation
Indices: 65095360--65095578 Score: 252
Period size: 39 Copynumber: 5.6 Consensus size: 40
65095350 AAAGCCTTCG
* * **
65095360 GGACTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCTGCATATAGCCTAC
* *
65095399 GGACCTTAAGTCCGGATATAATT-CCTGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCTGCATATAGCCTAC
* * *
65095438 AGACTTTAAGTCTC-GATATAATT-CTTGCATATAGCCTAT
1 GGACTTTAAGTC-CGGATATAATTCCCTGCATATAGCCTAC
* * *
65095477 GGACTTTAAGTCTGGATATAACT-CTTGCATATAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCTGCATATAGCCTAC
*
65095516 GGACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCTGCATATAGCCTAC
* *
65095555 GGACTTTTAGTCTGGATATAATTC
1 GGACTTTAAGTCCGGATATAATTC
65095579 TCAAATATCA
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
39 150 0.97
40 5 0.03
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (40 bp):
GGACTTTAAGTCCGGATATAATTCCCTGCATATAGCCTAC
Found at i:65095494 original size:78 final size:78
Alignment explanation
Indices: 65095361--65095578 Score: 278
Period size: 78 Copynumber: 2.8 Consensus size: 78
65095351 AAGCCTTCGG
* ** * *
65095361 GACTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAATTCCT
1 GACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTACGGACTTTAAGTCTGGATATAATTCCT
*
65095425 GCATATAGCCTGCA
65 GCATATAGCCTACA
** * * *
65095439 GACTTTAAGTCTC-GATATAATTCTTGCATATAGCCTATGGACTTTAAGTCTGGATATAACTCTT
1 GACTTTAAGTC-CGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCTGGATATAATTCCT
*
65095503 GCATATAGCCTACG
65 GCATATAGCCTACA
* *
65095517 GACTTTAAGTCCGGATATAATTCCCGCATATAGCCTGCGGACTTTTAGTCTGGATATAATTC
1 GACTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCTGGATATAATTC
65095579 TCAAATATCA
Statistics
Matches: 119, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
77 1 0.01
78 113 0.95
79 5 0.04
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (78 bp):
GACTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCTGGATATAATTCCTG
CATATAGCCTACA
Found at i:65104920 original size:34 final size:34
Alignment explanation
Indices: 65104881--65104948 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
65104871 AAAGAAGTTA
*
65104881 TTCATAAGGAGGTAATTAAATGGTTAGATGCGGG
1 TTCATAAGGAGGTAATTAAATGGTTAGACGCGGG
*
65104915 TTCATAATGAGGTAATTAAATGGTTAGACGCGGG
1 TTCATAAGGAGGTAATTAAATGGTTAGACGCGGG
65104949 AATTATTTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.29
Consensus pattern (34 bp):
TTCATAAGGAGGTAATTAAATGGTTAGACGCGGG
Found at i:65107627 original size:37 final size:37
Alignment explanation
Indices: 65107577--65107655 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
65107567 TTATTACGAA
* *
65107577 GTCTTACCCGGACATAA-TCTCCACACAAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACAAAGTCATCGG
**
65107614 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACAAAGTCATCGG
65107651 GTCTT
1 GTCTT
65107656 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACAAAGTCATCGG
Found at i:65107924 original size:47 final size:47
Alignment explanation
Indices: 65107773--65108323 Score: 1014
Period size: 47 Copynumber: 11.7 Consensus size: 47
65107763 GCCCTTCGGG
*
65107773 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
65107823 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65107869 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65107916 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65107963 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
65108010 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65108057 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65108104 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65108151 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
65108198 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65108245 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65108292 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
65108324 ATACTATCAT
Statistics
Matches: 490, Mismatches: 10, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
46 40 0.08
47 412 0.84
48 6 0.01
49 28 0.06
50 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:65114738 original size:47 final size:46
Alignment explanation
Indices: 65114668--65114841 Score: 183
Period size: 47 Copynumber: 3.7 Consensus size: 46
65114658 TGGTTGAGCA
*
65114668 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
65114714 TCCGAAACTTGTTGAGTTGTGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCG-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
65114762 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
65114808 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65114842 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 6 0.06
46 39 0.38
47 46 0.45
48 7 0.07
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:65115103 original size:19 final size:20
Alignment explanation
Indices: 65115066--65115103 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65115056 ATAAGGTGGT
65115066 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
65115086 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
65115104 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:65122305 original size:46 final size:46
Alignment explanation
Indices: 65122255--65122427 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
65122245 TGGTTGAGCA
*
65122255 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
65122301 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
65122348 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
65122394 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65122428 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:65122411 original size:93 final size:93
Alignment explanation
Indices: 65122252--65122422 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65122242 GGATGGTTGA
* *
65122252 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65122317 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
65122345 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
65122410 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
65122423 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65122689 original size:19 final size:20
Alignment explanation
Indices: 65122652--65122689 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65122642 ATAAGGTGGT
65122652 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
65122672 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
65122690 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:65146773 original size:18 final size:16
Alignment explanation
Indices: 65146741--65146779 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
65146731 TTAGTAAATA
65146741 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
65146757 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
65146775 AATAA
1 AATAA
65146780 AATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:65147723 original size:43 final size:43
Alignment explanation
Indices: 65147647--65147783 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
65147637 AGGATTTCCA
**
65147647 ATATGTG-TTCTTGTGTAAGACCAAATCTGGGACATTGGCATCG
1 ATATGTGATT-TTGTGTAAGACCATGTCTGGGACATTGGCATCG
* * * **
65147690 ATATGTGATTTTGAGTAAGACCATGTCTAGGACATCGGTGTC-
1 ATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCG
* * *
65147732 ATAATTGTGA-TTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 AT-A-TGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCG
*
65147776 ACATGTGA
1 ATATGTGA
65147784 CTACATGTAA
Statistics
Matches: 74, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
42 7 0.09
43 59 0.80
44 8 0.11
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
ATATGTGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCG
Found at i:65152207 original size:29 final size:28
Alignment explanation
Indices: 65152052--65152225 Score: 145
Period size: 28 Copynumber: 6.1 Consensus size: 28
65152042 ACATACATGC
* * *
65152052 ATATGGCCCACTAAGCCC-AATCTCATTT
1 ATATGGCCCATTAGGCCCAAATCACA-TT
* ** * *
65152080 AAATGGCCCATCCGGCCCAACTCACGTT
1 ATATGGCCCATTAGGCCCAAATCACATT
* * * * *
65152108 CATATGGCCAACTAGACCC-AATTATATT
1 -ATATGGCCCATTAGGCCCAAATCACATT
* *
65152136 CACATGGCCCATTAGGCCGAAATCACATT
1 -ATATGGCCCATTAGGCCCAAATCACATT
*
65152165 ATATGGCCCTTTAGGCCCAAATCACAGTT
1 ATATGGCCCATTAGGCCCAAATCACA-TT
*
65152194 ATGTGGCCCATTAGGCCCAAATCACATT
1 ATATGGCCCATTAGGCCCAAATCACATT
65152222 ATAT
1 ATAT
65152226 TCATGCTCAC
Statistics
Matches: 111, Mismatches: 31, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
28 62 0.56
29 49 0.44
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAAATCACATT
Found at i:65153704 original size:7 final size:7
Alignment explanation
Indices: 65153692--65153720 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
65153682 AAATTTTATG
65153692 AAGCCCA
1 AAGCCCA
65153699 AAGCCCA
1 AAGCCCA
65153706 AAGCCCA
1 AAGCCCA
65153713 AAGCCCA
1 AAGCCCA
65153720 A
1 A
65153721 TTCATCTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.41, G:0.14, T:0.00
Consensus pattern (7 bp):
AAGCCCA
Found at i:65156142 original size:27 final size:27
Alignment explanation
Indices: 65156111--65156259 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
65156101 TAAATTGTAC
65156111 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
65156138 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
65156165 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
65156193 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
65156220 AGCACTAAGTGT--GAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
65156245 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65156260 GACTCAATAT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
25 21 0.20
27 60 0.58
28 23 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:65156225 original size:55 final size:55
Alignment explanation
Indices: 65156110--65156259 Score: 182
Period size: 55 Copynumber: 2.8 Consensus size: 55
65156100 TTAAATTGTA
* *
65156110 CAGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * **
65156164 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
65156219 TAGCACTAAGTGT--GAG-TTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
65156260 GACTCAATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 22 0.26
53 3 0.04
54 16 0.19
55 43 0.51
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:65160150 original size:29 final size:28
Alignment explanation
Indices: 65160108--65160166 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 28
65160098 TTATATTCAC
*
65160108 ATGGCCCATTAGGCCGAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACA-TTAT
* *
65160137 ATGGGCCATTAGGCCCAAATCATATTAT
1 ATGGCCCATTAGGCCCAAATCACATTAT
65160165 AT
1 AT
65160167 TCATGCTCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (28 bp):
ATGGCCCATTAGGCCCAAATCACATTAT
Found at i:65166551 original size:46 final size:46
Alignment explanation
Indices: 65166498--65166588 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
65166488 TATATATGCA
* * *
65166498 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
65166544 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
65166589 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:65166631 original size:22 final size:22
Alignment explanation
Indices: 65166605--65166680 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
65166595 TTCCACGTTC
65166605 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
65166627 ATCACATATATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
65166652 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
65166674 ATCACAT
1 ATCACAT
65166681 ATGTGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:65166633 original size:47 final size:47
Alignment explanation
Indices: 65166568--65166752 Score: 201
Period size: 47 Copynumber: 3.9 Consensus size: 47
65166558 TTCGCATTAA
* ** * *
65166568 CCATTCGGCTTTCCCACATATATACACT-TCCACGTTCATCACATTGG
1 CCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGG
* * *
65166615 CCATTCTGCCTTATCACATATATGCATGTTCACATTTATCACATTGG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* * * *
65166662 CCATTCGGCCTTATCACATATGTGCATGTTCATATTCATCACATTTG
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
* * ** *
65166709 CCATTCGGCCTTAGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
65166753 AAAATCCTAA
Statistics
Matches: 116, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
46 1 0.01
47 115 0.99
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.35
Consensus pattern (47 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGG
Found at i:65170817 original size:49 final size:49
Alignment explanation
Indices: 65170742--65170910 Score: 196
Period size: 52 Copynumber: 3.3 Consensus size: 49
65170732 ACTAGTGGCT
*
65170742 CAAGTGTGGTACTATGTGGAGGCCACTTTGAGAAG-AGATAGCTTGGTCA
1 CAAGTGTGGTACTATGT-GAGGCCACTTTGTGAAGAAGATAGCTTGGTCA
* *
65170791 CAAGTGTGGTACTATGTGACGACCACTTTGTGAAGAAAGATTGCTTTGGTCA
1 CAAGTGTGGTACTATGTGA-GGCCACTTTGTGAAG-AAGATAGC-TTGGTCA
* * ***
65170843 CAAGTGTGGTACCATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTCACTA
1 CAAGTGTGGTACTATGTG-AGGCCACTTTGTGAAGAAGATAGCTTGGTC-A
*
65170894 CAAGGGTGGTACTATGT
1 CAAGTGTGGTACTATGT
65170911 TCAAGCCACC
Statistics
Matches: 102, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.02
49 30 0.29
50 3 0.03
51 28 0.27
52 38 0.37
53 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (49 bp):
CAAGTGTGGTACTATGTGAGGCCACTTTGTGAAGAAGATAGCTTGGTCA
Found at i:65170919 original size:51 final size:49
Alignment explanation
Indices: 65170742--65170919 Score: 164
Period size: 51 Copynumber: 3.5 Consensus size: 49
65170732 ACTAGTGGCT
* *
65170742 CAAGTGTGGTACTATGTGGAGGCCACTTTGAGAAG-AGATAGCTTGGT-C-A
1 CAAGTGTGGTACTATGT-GAAGCCACTTTGTGAAGAAGATAGCTT--TACTA
* * **
65170791 CAAGTGTGGTACTATGTGACGACCACTTTGTGAAGAAAGATTGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAG-CCACTTTGTGAAG-AAGATAGCTTTACT-A
* *
65170843 CAAGTGTGGTACCATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTCACTA
1 CAAGTGTGGTACTATGTGAA-GCCACTTTGTGAAGAAGATAGCTTT-ACTA
* *
65170894 CAAGGGTGGTACTATGTTCAAGCCAC
1 CAAGTGTGGTACTATG-TGAAGCCAC
65170920 CAAGTATCCG
Statistics
Matches: 107, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
48 3 0.03
49 30 0.28
51 37 0.35
52 36 0.34
53 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (49 bp):
CAAGTGTGGTACTATGTGAAGCCACTTTGTGAAGAAGATAGCTTTACTA
Found at i:65171417 original size:27 final size:27
Alignment explanation
Indices: 65171380--65171431 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
65171370 TTATATGCTT
65171380 AAAAAAATAGAAATATTACCCAAAAGA
1 AAAAAAATAGAAATATTACCCAAAAGA
*
65171407 AAAAAAATAGAAATATTATCCAAAA
1 AAAAAAATAGAAATATTACCCAAAA
65171432 TCTGTATGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.67, C:0.10, G:0.06, T:0.17
Consensus pattern (27 bp):
AAAAAAATAGAAATATTACCCAAAAGA
Found at i:65173834 original size:265 final size:266
Alignment explanation
Indices: 65173359--65173894 Score: 867
Period size: 265 Copynumber: 2.0 Consensus size: 266
65173349 ATTACCATTC
* * *
65173359 CCATCTTGGGACTTTCATCGCATTATTCATTACAATACCCGTTGAACACACATGGAATACTATTG
1 CCATCTTGGGAATTTCATCGCATCATTCATTACAATACCCATTGAACACACA-GGAATACTATTG
*
65173424 GATACAGGGAAACTTGCACATGAGTGCCACATAAACATACATAGCCGAAGCAACCTCAAATCATG
65 GATACAGGGAAACTTGCACATGAGTGCCACATAAAAATACATAGCCGAAGCAACCTCAAATCATG
65173489 CAACGCTTACAATAGAGCTACTCACGGGCTTGCTCGTACAAGCTATCGATCAAGGTGTAACTACA
130 CAACGCTTACAATAGAGCTACTCACGGGCTTGCTCGTACAAGCTATCGATCAAGGTGTAACTACA
* * * * *
65173554 CGGGCTGCTCACAAAAGCTGTCAGGTATCCAACCACTCAAGGATTACCTAGCCACCGGTAGGACA
195 CGGACTACTCACAAAAGCTGTCAGGTATCCAACAACTCAAGGATTACCTAGCAACCAGTAGGACA
*
65173619 CATAAGA
260 CACAAGA
* *
65173626 CCATCTTGGGAATTTCATCGCATCATTCATTATAATACCCATTGAACACTCA-GAATACTATTGG
1 CCATCTTGGGAATTTCATCGCATCATTCATTACAATACCCATTGAACACACAGGAATACTATTGG
* * * * *
65173690 ATACATGGAAACTTGTACATGAGTGCCACATAAAAATACGTAGCCGAAGCTACCTCATATCATGC
66 ATACAGGGAAACTTGCACATGAGTGCCACATAAAAATACATAGCCGAAGCAACCTCAAATCATGC
* * *
65173755 AATGCTTACAATAGAGCTACTCACGGGCTTGCTCGTATAAGCTATCGATCAAGTTGTAACTACAC
131 AACGCTTACAATAGAGCTACTCACGGGCTTGCTCGTACAAGCTATCGATCAAGGTGTAACTACAC
*
65173820 GGACTACTCACAAAAGCTGTCAGGTATCCGACAACTCAAGGATTACCTAGCAACCAGTAGGACAC
196 GGACTACTCACAAAAGCTGTCAGGTATCCAACAACTCAAGGATTACCTAGCAACCAGTAGGACAC
65173885 ACAAGA
261 ACAAGA
65173891 CCAT
1 CCAT
65173895 TGCCCGAAAC
Statistics
Matches: 248, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
265 201 0.81
267 47 0.19
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (266 bp):
CCATCTTGGGAATTTCATCGCATCATTCATTACAATACCCATTGAACACACAGGAATACTATTGG
ATACAGGGAAACTTGCACATGAGTGCCACATAAAAATACATAGCCGAAGCAACCTCAAATCATGC
AACGCTTACAATAGAGCTACTCACGGGCTTGCTCGTACAAGCTATCGATCAAGGTGTAACTACAC
GGACTACTCACAAAAGCTGTCAGGTATCCAACAACTCAAGGATTACCTAGCAACCAGTAGGACAC
ACAAGA
Found at i:65192603 original size:41 final size:40
Alignment explanation
Indices: 65192550--65192719 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 40
65192540 AGTCCGACTC
* * *
65192550 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCAGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
* * *
65192589 TTAGACTACTGGCTCGAAGGCCCTTCGAAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAAACCAAGCT-CGGA
* * *
65192629 TTATAACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAAACCAAGCTCGG--A
* *
65192674 TTAG-CACTGGCTTAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
65192713 TTTAGAC
1 -TTAGAC
65192720 CCCGATTAGC
Statistics
Matches: 105, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
39 5 0.05
40 17 0.16
41 50 0.48
42 21 0.20
43 9 0.09
45 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
Found at i:65192657 original size:42 final size:41
Alignment explanation
Indices: 65192608--65192699 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 41
65192598 TGGCTCGAAG
65192608 GCCCTTCGAAACTAAGTCCGGTTA-TAACACTGGCTCTAAAAA
1 GCCCTTCGAAACTAAGTCCGGTTATTAACACTGGCT-T-AAAA
* *
65192650 GCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTTAAAA
1 GCCCTTCGAAACTAAGTCCGGTTATTAACACTGGCTTAAAA
65192691 GCCCTTCGA
1 GCCCTTCGA
65192700 GACCAAGCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
41 13 0.28
42 24 0.51
43 10 0.21
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (41 bp):
GCCCTTCGAAACTAAGTCCGGTTATTAACACTGGCTTAAAA
Done.