Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 202 of 290
Found at i:65200950 original size:41 final size:40
Alignment explanation
Indices: 65200900--65201069 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
65200890 AGTCCGACTC
65200900 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
65200939 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * * *
65200979 TTATGACACTGGCTCTAAAAAGCCCTTCCAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
65201024 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
65201063 TTTAGAC
1 -TTAGAC
65201070 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 18 0.17
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:65205936 original size:15 final size:15
Alignment explanation
Indices: 65205912--65205956 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
65205902 GCTCGTCAGC
65205912 CAGCTTTGGTGTATG
1 CAGCTTTGGTGTATG
*
65205927 CAGGTTTGGTGTATG
1 CAGCTTTGGTGTATG
*
65205942 CAGCTTTGGTATATG
1 CAGCTTTGGTGTATG
65205957 GTGTACCTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.16, C:0.11, G:0.33, T:0.40
Consensus pattern (15 bp):
CAGCTTTGGTGTATG
Found at i:65216465 original size:47 final size:46
Alignment explanation
Indices: 65216353--65216570 Score: 176
Period size: 47 Copynumber: 4.7 Consensus size: 46
65216343 AATTTCTTGT
* *
65216353 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATAA
* * * * *
65216399 GTGCCAGTATAAGACCATGTTTGGGACATGGCATCGGCGTAGA-GATAA
1 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATGATAA
* * * *
65216447 GTGCTAGTGTAAGACATGTCTGGGACACGCATCAGCCTCGATGATGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATAA
* * * * * *
65216494 -TAGCCAGTGTAAGACGTGTCTGGGACACGCATCGTCTA-A-GAGT-T
1 GT-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGA-TAA
* *
65216538 GTGCTAGTGTAAGACATGTCTAGGTCATGCATC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
65216571 AGGATGTATA
Statistics
Matches: 136, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
44 28 0.21
45 3 0.02
46 21 0.15
47 59 0.43
48 23 0.17
49 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATAA
Found at i:65216518 original size:94 final size:91
Alignment explanation
Indices: 65216353--65216572 Score: 257
Period size: 94 Copynumber: 2.4 Consensus size: 91
65216343 AATTTCTTGT
* *
65216353 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTATAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTATAAGACCATG
* *
65216418 TTTGGGACATGGCATCGGCGT-AGAGATAA
66 TCTGGGACA-CGCATCGGC-TAAGAG-T-A
* * * *
65216447 GTGCTAGTGTAAGACATGTCTGGGACACGCATCAGCCTCGATGATGA-TAGCCAGTGTAAGA-CG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGT-GCCAGTATAAGACCA
* *
65216510 TGTCTGGGACACGCATCGTCTAAGAGTT
64 TGTCTGGGACACGCATCGGCTAAGAGTA
* *
65216538 GTGCTAGTGTAAGACATGTCTAGGTCATGCATCAG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG
65216573 GATGTATATA
Statistics
Matches: 110, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
91 32 0.29
92 2 0.02
93 11 0.10
94 48 0.44
95 17 0.15
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (91 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTATAAGACCATG
TCTGGGACACGCATCGGCTAAGAGTA
Found at i:65217505 original size:55 final size:55
Alignment explanation
Indices: 65217383--65217508 Score: 157
Period size: 55 Copynumber: 2.3 Consensus size: 55
65217373 CTTTTTAGTT
*
65217383 AGTGTTGTACACGGGTAGGCTACACGGGCGTGTGCCATGTCCGTGTCTTAAAGTC
1 AGTGTTGTACACGGGCAGGCTACACGGGCGTGTGCCATGTCCGTGTCTTAAAGTC
* ** * *
65217438 AGTATCATACACGGGCAGG-TCACACGGGCGTGTGCCATGGT-CGTGTGTTGAAGTC
1 AGTGTTGTACACGGGCAGGCT-ACACGGGCGTGTGCCAT-GTCCGTGTCTTAAAGTC
*
65217493 AGTGTTGCACACGGGC
1 AGTGTTGTACACGGGC
65217509 TAAGGACATG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 1 0.02
55 56 0.95
56 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.34, T:0.25
Consensus pattern (55 bp):
AGTGTTGTACACGGGCAGGCTACACGGGCGTGTGCCATGTCCGTGTCTTAAAGTC
Found at i:65221215 original size:65 final size:65
Alignment explanation
Indices: 65221065--65221220 Score: 179
Period size: 65 Copynumber: 2.4 Consensus size: 65
65221055 GTGACTAGTG
* * * *
65221065 CAGCTCTTTGTAAGCGTCCTGTTTAT-TGATCGGTTGTGATCCTATATATGTTGCAGACACAAAC
1 CAGCTCTTTGTGAGCGTCCTG-TTATGCGATCGGTTGTGATCCTACATATATTGCAGACACAAAC
*
65221129 G
65 A
* * **
65221130 CAACTCTTTGTGAGCATCCTGTTATGCGATCGGTTGTGATCCTACATATATTGTGGACACAAACA
1 CAGCTCTTTGTGAGCGTCCTGTTATGCGATCGGTTGTGATCCTACATATATTGCAGACACAAACA
* * * *
65221195 TAGCTCTTTATGAGTGTCCTGATATG
1 CAGCTCTTTGTGAGCGTCCTGTTATG
65221221 GCTCACCTAA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
64 4 0.05
65 71 0.95
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (65 bp):
CAGCTCTTTGTGAGCGTCCTGTTATGCGATCGGTTGTGATCCTACATATATTGCAGACACAAACA
Found at i:65222786 original size:27 final size:26
Alignment explanation
Indices: 65222738--65222789 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65222728 GCGAGGCTGC
*
65222738 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
65222764 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
65222790 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:65225651 original size:12 final size:12
Alignment explanation
Indices: 65225634--65225658 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65225624 AAGCACAAGA
65225634 TCCTCCTTCCAT
1 TCCTCCTTCCAT
65225646 TCCTCCTTCCAT
1 TCCTCCTTCCAT
65225658 T
1 T
65225659 TACGCTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.48, G:0.00, T:0.44
Consensus pattern (12 bp):
TCCTCCTTCCAT
Found at i:65227693 original size:18 final size:17
Alignment explanation
Indices: 65227670--65227712 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
65227660 TTCATATAGT
65227670 TTGCATACTTAGGGATCA
1 TTGCATA-TTAGGGATCA
65227688 TTGC--ATTAGGGATCA
1 TTGCATATTAGGGATCA
65227703 TTGCAT-TTAG
1 TTGCATATTAG
65227713 TTTAATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 14 0.61
16 5 0.22
18 4 0.17
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (17 bp):
TTGCATATTAGGGATCA
Found at i:65227698 original size:15 final size:15
Alignment explanation
Indices: 65227678--65227709 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
65227668 GTTTGCATAC
65227678 TTAGGGATCATTGCA
1 TTAGGGATCATTGCA
65227693 TTAGGGATCATTGCA
1 TTAGGGATCATTGCA
65227708 TT
1 TT
65227710 TAGTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (15 bp):
TTAGGGATCATTGCA
Found at i:65232954 original size:48 final size:48
Alignment explanation
Indices: 65232888--65233115 Score: 286
Period size: 48 Copynumber: 4.9 Consensus size: 48
65232878 GGTTATGTGC
*
65232888 GATCCCATGTAAGACCATATCTGGGACATGGCTTTGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* ** * *
65232936 AATTTCGTGTAAGACCATAGCTGGG-C-T---ATTGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* *
65232979 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGGATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * *
65233027 GATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCGTCGATATGT
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * *
65233075 GATCTCATGTAGGACCATATCCGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATC
65233116 CTACAATGTG
Statistics
Matches: 152, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
43 34 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 114 0.75
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
Found at i:65233043 original size:91 final size:94
Alignment explanation
Indices: 65232888--65233115 Score: 284
Period size: 91 Copynumber: 2.4 Consensus size: 94
65232878 GGTTATGTGC
* ** *
65232888 GATCCCATGTAAGACCATATCTGGGACATGGCTTTGGCATCGATATGTAATTTCGTGTAAGACCA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGTAATCCCATGTAAGACCA
*
65232953 TAG-CT-GGGC-T-ATTGGCATCGATATGT
66 T-GTCTAGGACATGATTGGCATCGATATGT
* * *
65232979 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGGATCGATATGTGATCCCATGTAAGACCA
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGTAATCCCATGTAAGACCA
*
65233044 TGTCTAGGACATGGCATTGGCGTCGATATGT
66 TGTCTAGGACAT-G-ATTGGCATCGATATGT
* * * *
65233075 GATCTCATGTAGGACCATATCCGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATC
65233116 CTACAATGTG
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 61 0.53
92 3 0.03
93 1 0.01
96 50 0.43
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (94 bp):
GATCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGTAATCCCATGTAAGACCA
TGTCTAGGACATGATTGGCATCGATATGT
Found at i:65246388 original size:23 final size:24
Alignment explanation
Indices: 65246361--65246405 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
65246351 TCGTTAATTT
65246361 ATTAAATAAA-ATTAAT-GTAAAAA
1 ATTAAA-AAATATTAATAGTAAAAA
65246384 ATTAAAAAATATTAATAGTAAA
1 ATTAAAAAATATTAATAGTAAA
65246406 TCAAGGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.15
23 12 0.60
24 5 0.25
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (24 bp):
ATTAAAAAATATTAATAGTAAAAA
Found at i:65246507 original size:15 final size:15
Alignment explanation
Indices: 65246487--65246517 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65246477 CCAAATGAGG
*
65246487 TTAGGGTTTAGAGTT
1 TTAGGGTCTAGAGTT
65246502 TTAGGGTCTAGAGTT
1 TTAGGGTCTAGAGTT
65246517 T
1 T
65246518 AAGGATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.32, T:0.45
Consensus pattern (15 bp):
TTAGGGTCTAGAGTT
Found at i:65250421 original size:10 final size:10
Alignment explanation
Indices: 65250408--65250442 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
65250398 AGATTTTTAT
65250408 AAAATTTCAA
1 AAAATTTCAA
*
65250418 AAAATTATAAA
1 AAAATT-TCAA
65250429 AAAATTTCAA
1 AAAATTTCAA
65250439 AAAA
1 AAAA
65250443 ATTAAGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (10 bp):
AAAATTTCAA
Found at i:65250430 original size:11 final size:12
Alignment explanation
Indices: 65250408--65250446 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
65250398 AGATTTTTAT
65250408 AAAATT-TC-AA
1 AAAATTATCAAA
65250418 AAAATTAT-AAA
1 AAAATTATCAAA
65250429 AAAATT-TCAAA
1 AAAATTATCAAA
65250440 AAAATTA
1 AAAATTA
65250447 AGAATTACGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.28
11 18 0.72
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (12 bp):
AAAATTATCAAA
Found at i:65250490 original size:25 final size:25
Alignment explanation
Indices: 65250456--65250526 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 25
65250446 AAGAATTACG
65250456 AAAAAT-ATTATATTTTTAAAAATT
1 AAAAATAATTATATTTTTAAAAATT
65250480 AAAAATAATTATATTTTTATAAAAATT
1 AAAAATAATTATA-TTTT-TAAAAATT
** *
65250507 TTAAA-AATTATTTTTTTAAA
1 AAAAATAATTATATTTTTAAA
65250527 CAATCTCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
24 10 0.24
25 10 0.24
26 10 0.24
27 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
AAAAATAATTATATTTTTAAAAATT
Found at i:65250578 original size:24 final size:24
Alignment explanation
Indices: 65250546--65250596 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
65250536 TATAGGTTCT
65250546 AATTATATATGCTCTTTTTGACAC
1 AATTATATATGCTCTTTTTGACAC
*
65250570 AATTATATATGTTCTTTTTGACAC
1 AATTATATATGCTCTTTTTGACAC
65250594 AAT
1 AAT
65250597 GTCTAGAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.14, G:0.08, T:0.47
Consensus pattern (24 bp):
AATTATATATGCTCTTTTTGACAC
Found at i:65254613 original size:40 final size:40
Alignment explanation
Indices: 65254567--65254711 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
65254557 CTCACACAAG
* * *
65254567 GCCTTCGGGTCTTAACTCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAACCCGGATATAGTCACTAGCACAAAT
* * *
65254607 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATATAGTCACTAGCACAAAT
* ** * * *
65254647 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAACCCGGATATAGTCAC-TAGCACAAAT
* * *
65254688 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGTCTTAACCCGGATAT
65254712 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 60 0.68
41 28 0.32
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAGTCACTAGCACAAAT
Found at i:65254694 original size:41 final size:39
Alignment explanation
Indices: 65254584--65254711 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 39
65254574 GGTCTTAACT
* * *
65254584 CGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCGCTAGCACAAATGCCTTC-GGACTTAGCC
*
65254624 CGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTC
1 CGGATATAGTCGCTAGCACAAATGCCTTCGGA-CTTAGCC
* *
65254664 CGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCC
1 CGGATATAGTCGC-TAGCACAAATGCCTTC-GGACTTAGCC
*
65254705 CAGATAT
1 CGGATAT
65254712 CATTCGAGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.04
40 44 0.58
41 26 0.34
42 3 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (39 bp):
CGGATATAGTCGCTAGCACAAATGCCTTCGGACTTAGCC
Found at i:65262614 original size:39 final size:40
Alignment explanation
Indices: 65262569--65262736 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
65262559 CGGGGTTTAG
* * *
65262569 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
65262608 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
65262648 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
65262688 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
65262729 CCGGATAT
1 CCGGATAT
65262737 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:65262719 original size:41 final size:40
Alignment explanation
Indices: 65262592--65262736 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
65262582 CTCGCACAAG
* * * * *
65262592 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
65262632 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
65262672 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
65262713 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65262737 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:65265435 original size:46 final size:46
Alignment explanation
Indices: 65265368--65265458 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
65265358 TAAATAATGT
*
65265368 TAGGATATTATTATTGGATATTATCTTTTA-CGAATTTGATTCCTAA
1 TAGGATATTATTATTAGATATTATCTTTTAGC-AATTTGATTCCTAA
65265414 TAGGATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTA
1 TAGGATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTA
65265459 TGTAGCTACT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (46 bp):
TAGGATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTAA
Found at i:65269457 original size:51 final size:51
Alignment explanation
Indices: 65269381--65269555 Score: 154
Period size: 51 Copynumber: 3.4 Consensus size: 51
65269371 CCTTCACATG
* *** *
65269381 GTACCACACTTGTGACCAAAACTATCTTTTACACATAGTAGCTTGCACTTA
1 GTACCACACATGTGACCAAAACTATCGGGTACACATAGTAGCCTGCACTTA
* * * *
65269432 GTACCACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACTTA
1 GTACCACACATGTGACCAAAACTATCGGGTACACATAGTAGCCTGCACTTA
* * * * ** * *
65269483 GTACTACACATGCGACC-TAACCATTTGGTACACGTAGTAGCATGCACTTA
1 GTACCACACATGTGACCAAAACTATCGGGTACACATAGTAGCCTGCACTTA
* * *
65269533 GTACTACAAACGTGACCTAAAAC
1 GTACCACACATGTGACC-AAAAC
65269556 CATTTTAAAC
Statistics
Matches: 98, Mismatches: 24, Indels: 3
0.78 0.19 0.02
Matches are distributed among these distances:
50 39 0.40
51 56 0.57
52 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (51 bp):
GTACCACACATGTGACCAAAACTATCGGGTACACATAGTAGCCTGCACTTA
Found at i:65269531 original size:50 final size:50
Alignment explanation
Indices: 65269410--65269598 Score: 189
Period size: 50 Copynumber: 3.7 Consensus size: 50
65269400 AACTATCTTT
* * * * **
65269410 TACACATAGTAGCTTGCACTTAGTACCACACATGTGATCGAAGCTATCGGG
1 TACACATAGTAGCTTGCACTTAGTACTACACATGTGACCTAA-CCATTTGG
* * *
65269461 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATTTGG
1 TACACATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATTTGG
* * * * **
65269511 TACACGTAGTAGCATGCACTTAGTACTACAAACGTGACCTAAAACCATTTTA
1 TACACATAGTAGCTTGCACTTAGTACTACACATGTGACCT--AACCATTTGG
* * *
65269563 AACACAAAGTAGCTTGCACATAGTACTACACATGTG
1 TACACATAGTAGCTTGCACTTAGTACTACACATGTG
65269599 TTCTCACAAC
Statistics
Matches: 112, Mismatches: 24, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
50 39 0.35
51 36 0.32
52 37 0.33
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (50 bp):
TACACATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACCATTTGG
Found at i:65269581 original size:52 final size:50
Alignment explanation
Indices: 65269468--65269592 Score: 133
Period size: 52 Copynumber: 2.5 Consensus size: 50
65269458 GGGTACGCAT
* * * ** **
65269468 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATTTGGTACACGT
1 AGTAGCATGCACTTAGTACTACAAACGCGACCTAACCATTTGAAACACAA
* *
65269518 AGTAGCATGCACTTAGTACTACAAACGTGACCTAAAACCATTTTAAACACAA
1 AGTAGCATGCACTTAGTACTACAAACGCGACCT--AACCATTTGAAACACAA
* *
65269570 AGTAGCTTGCACATAGTACTACA
1 AGTAGCATGCACTTAGTACTACA
65269593 CATGTGTTCT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
50 29 0.47
52 33 0.53
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (50 bp):
AGTAGCATGCACTTAGTACTACAAACGCGACCTAACCATTTGAAACACAA
Found at i:65272001 original size:46 final size:46
Alignment explanation
Indices: 65271901--65271988 Score: 167
Period size: 46 Copynumber: 1.9 Consensus size: 46
65271891 GGGGTGTTAG
*
65271901 GATATTATTAATAGATATTATCTTTTAGCAATTTGATTCCTAATAA
1 GATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTAATAA
65271947 GATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTA
1 GATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTA
65271989 TGCAAATATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.48
Consensus pattern (46 bp):
GATATTATTATTAGATATTATCTTTTAGCAATTTGATTCCTAATAA
Found at i:65273165 original size:13 final size:13
Alignment explanation
Indices: 65273147--65273184 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
65273137 GCTCAACACG
65273147 GACACGCCCGTGT
1 GACACGCCCGTGT
* *
65273160 GACACGCCCCTAT
1 GACACGCCCGTGT
65273173 GACACGCCCGTG
1 GACACGCCCGTG
65273185 AGTGATTTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.42, G:0.26, T:0.13
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:65276752 original size:13 final size:13
Alignment explanation
Indices: 65276734--65276762 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
65276724 AATTAAGGTT
65276734 AAAATAGTAAATG
1 AAAATAGTAAATG
65276747 AAAATAGTAAATG
1 AAAATAGTAAATG
65276760 AAA
1 AAA
65276763 TAATATGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAATAGTAAATG
Found at i:65281528 original size:40 final size:40
Alignment explanation
Indices: 65281491--65281662 Score: 267
Period size: 40 Copynumber: 4.3 Consensus size: 40
65281481 GCTACTCGTT
* *
65281491 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
65281531 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
65281571 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
65281611 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
65281650 CAAATGCCTTCGG
1 CAAATGCCTTCGG
65281663 ATCTTAGTCT
Statistics
Matches: 124, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 34 0.27
40 88 0.71
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:65281700 original size:79 final size:79
Alignment explanation
Indices: 65281491--65281715 Score: 256
Period size: 80 Copynumber: 2.8 Consensus size: 79
65281481 GCTACTCGTT
* * * * *
65281491 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
65281556 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
65281571 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
65281635 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * * *
65281650 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCACAAAACCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
65281714 GA
64 GA
65281716 CATCATTCGA
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
78 3 0.02
79 58 0.47
80 60 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:65281700 original size:119 final size:120
Alignment explanation
Indices: 65281493--65281715 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
65281483 TACTCGTTCA
*
65281493 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
65281558 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * ** *
65281613 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCTGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
65281675 ATATGGTCACTTAGCACAAA-ACCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATACCTTCGGGACTTAACCCGGA
65281716 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:65282912 original size:56 final size:56
Alignment explanation
Indices: 65282845--65282964 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
65282835 TATTAGTTTA
65282845 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
65282901 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
65282957 TTGCCCAT
1 TTGCCCAT
65282965 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:65283814 original size:13 final size:13
Alignment explanation
Indices: 65283792--65283835 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
65283782 TGGGCGTGTT
65283792 CGTG-CACACGGC
1 CGTGTCACACGGC
65283804 CGTGTCACACGGC
1 CGTGTCACACGGC
*
65283817 CATGTCACACGGC
1 CGTGTCACACGGC
65283830 CGTGTC
1 CGTGTC
65283836 CTACTTCGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 4 0.14
13 25 0.86
ACGTcount: A:0.16, C:0.39, G:0.30, T:0.16
Consensus pattern (13 bp):
CGTGTCACACGGC
Found at i:65290441 original size:34 final size:32
Alignment explanation
Indices: 65290399--65290475 Score: 90
Period size: 32 Copynumber: 2.4 Consensus size: 32
65290389 AAATAGATAG
65290399 GTATATATAATATAAATATGCGTGCATGGTTTTGT
1 GTATATATAATATAAATATGCGTG-AT--TTTTGT
*
65290434 -TATATAT-A-ATACATATGCGTGATTTTTGT
1 GTATATATAATATAAATATGCGTGATTTTTGT
65290463 GT-TATATAATATA
1 GTATATATAATATA
65290476 TATTCGTAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
29 11 0.29
30 2 0.05
31 5 0.13
32 12 0.32
33 1 0.03
34 7 0.18
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.45
Consensus pattern (32 bp):
GTATATATAATATAAATATGCGTGATTTTTGT
Found at i:65290460 original size:29 final size:32
Alignment explanation
Indices: 65290399--65290478 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 32
65290389 AAATAGATAG
65290399 GTATATATAATATAAATATGCGTGCATGGTTTTGT
1 GTATATAT-A-ATAAATATGCGTGCAT-GTTTTGT
*
65290434 -TATATATAATACATATGCGTG-AT-TTTTGT
1 GTATATATAATAAATATGCGTGCATGTTTTGT
*
65290463 GT-TATATAATATATAT
1 GTATATATAATAAATAT
65290479 TCGTAGGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
29 19 0.45
30 1 0.02
31 2 0.05
32 12 0.29
33 1 0.02
34 7 0.17
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.46
Consensus pattern (32 bp):
GTATATATAATAAATATGCGTGCATGTTTTGT
Found at i:65290529 original size:30 final size:33
Alignment explanation
Indices: 65290493--65290563 Score: 85
Period size: 35 Copynumber: 2.2 Consensus size: 33
65290483 AGGGTTTGTA
*
65290493 ATATATAT-G-AGTGGG-TTTATTGTATTTAAT
1 ATATATATCGTAGTGGGTTTTATTGTATATAAT
*
65290523 ATATATATGCGTTTGTGGGTTTTATTGTATATAAT
1 ATATATAT-CG-TAGTGGGTTTTATTGTATATAAT
65290558 ATATAT
1 ATATAT
65290564 TTATAAGACT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 8 0.24
32 1 0.03
34 5 0.15
35 20 0.59
ACGTcount: A:0.30, C:0.01, G:0.18, T:0.51
Consensus pattern (33 bp):
ATATATATCGTAGTGGGTTTTATTGTATATAAT
Found at i:65291950 original size:17 final size:17
Alignment explanation
Indices: 65291928--65291966 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
65291918 ATCTACTCTA
65291928 TGTGAACCATTAACTCG
1 TGTGAACCATTAACTCG
* * *
65291945 TGTGAACTATTATCTTG
1 TGTGAACCATTAACTCG
65291962 TGTGA
1 TGTGA
65291967 GCTGCGATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (17 bp):
TGTGAACCATTAACTCG
Found at i:65294700 original size:6 final size:6
Alignment explanation
Indices: 65294682--65294799 Score: 93
Period size: 6 Copynumber: 19.3 Consensus size: 6
65294672 AAGAAACATT
*
65294682 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
65294731 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT AT-AGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
65294781 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
65294800 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.08
6 72 0.80
7 9 0.10
8 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:65294729 original size:31 final size:31
Alignment explanation
Indices: 65294691--65294799 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
65294681 TATCAGAACT
* * *
65294691 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
65294722 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
65294753 AGAATCAAAATCAGAATCAGTAT-AGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
65294783 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
65294800 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 24 0.32
31 51 0.68
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:65294755 original size:25 final size:25
Alignment explanation
Indices: 65294694--65294772 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
65294684 CAGAACTAGA
65294694 ATCA-GAATCAGAATCAGAATCAGGT
1 ATCAGGAATCAGAATCAGAATCA-GT
65294719 GA-CA-GAATCAGAATCAGAATCAGT
1 -ATCAGGAATCAGAATCAGAATCAGT
* *
65294743 ATCAGGTAA-CAGAATCAAAATCAGA
1 ATCAGG-AATCAGAATCAGAATCAGT
65294768 ATCAG
1 ATCAG
65294773 TATAGGTAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.02
24 4 0.08
25 40 0.83
26 3 0.06
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (25 bp):
ATCAGGAATCAGAATCAGAATCAGT
Found at i:65295399 original size:26 final size:27
Alignment explanation
Indices: 65295311--65295426 Score: 155
Period size: 27 Copynumber: 4.3 Consensus size: 27
65295301 GGGGTAAAAT
*
65295311 GGTAATTTTACCCCACAAGGGTATCTT-
1 GGTAATTTTACCCTACAAGGGTAT-TTC
* * *
65295338 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
65295365 AGTAATTTTACCCTACAA-GGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
65295391 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
65295418 GGTAATTTT
1 GGTAATTTT
65295427 GTAAATCGAG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 26 0.34
27 50 0.66
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:65295413 original size:53 final size:54
Alignment explanation
Indices: 65295312--65295426 Score: 153
Period size: 53 Copynumber: 2.1 Consensus size: 54
65295302 GGGTAAAATG
* *
65295312 GTAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAAGGGTATTTCA
* * * *
65295366 GTAATTTTACCCTACAA-GGTAT-TTCGGTATTTTTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCCACAAGGGTATCTT-GGTAATTCTACCCTACAAGGGTATTTCA
65295419 GTAATTTT
1 GTAATTTT
65295427 GTAAATCGAG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
52 2 0.04
53 36 0.67
54 16 0.30
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.39
Consensus pattern (54 bp):
GTAATTTTACCCCACAAGGGTATCTTGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:65295492 original size:27 final size:27
Alignment explanation
Indices: 65295462--65295781 Score: 245
Period size: 27 Copynumber: 11.9 Consensus size: 27
65295452 CGGTAAATCA
* **
65295462 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAAAACG
** * ***
65295489 AGGGTATTTTAATAATTTTATAGGTCG
1 AGGGTATTTTGGTAATTTTACAAAACG
* * *
65295516 AGGGTATTTTAGTAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAAACG
*
65295542 AGGGGTATTTTGGTAATTTTAC-AAACT
1 A-GGGTATTTTGGTAATTTTACAAAACG
* *
65295569 AGGGGTATTTTGATAATTTTAC-AAACC
1 A-GGGTATTTTGGTAATTTTACAAAACG
*
65295596 AGGGGTATTTTGGTAATTTTAC-AAACT
1 A-GGGTATTTTGGTAATTTTACAAAACG
* * * *
65295623 AGGGGTATTTTGGTGATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAAACG
* * *
65295651 AGGGTATTCTAGTAATTTTAC-AAACT
1 AGGGTATTTTGGTAATTTTACAAAACG
** * *
65295677 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTACAAAACG
*
65295705 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAAACG
* * * * *
65295732 ATGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTTGGTAATTTTACAAAACG
* *
65295759 GGGGTACTTTGGTAATTTTACAA
1 AGGGTATTTTGGTAATTTTACAA
65295782 TTGGGGGTAT
Statistics
Matches: 240, Mismatches: 48, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
26 8 0.03
27 224 0.93
28 8 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAAACG
Found at i:65295575 original size:54 final size:54
Alignment explanation
Indices: 65295517--65295781 Score: 352
Period size: 54 Copynumber: 4.9 Consensus size: 54
65295507 TATAGGTCGA
* * * *
65295517 GGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* *
65295571 GGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* * * *
65295625 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* * *
65295679 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-TCG
1 GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* * * * *
65295732 ATGATATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA
1 -GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAA
65295782 TTGGGGGTAT
Statistics
Matches: 188, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 2 0.01
54 186 0.99
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
Found at i:65295602 original size:81 final size:82
Alignment explanation
Indices: 65295456--65295781 Score: 324
Period size: 81 Copynumber: 4.0 Consensus size: 82
65295446 ATAATTCGGT
* * * * * ***
65295456 AAATCAAGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTTAATAATTTTATAGGTC-GAGG
1 AAATCAAGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTGATAATTTTACAAACCAG-GG
* *
65295519 GTATTTTAGTAATTTCAC
65 GTATTTTGGTAATTTTAC
*
65295537 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGATAATTTTACAAACCAGGGG
1 AAATCAAGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTGATAATTTTACAAACCAGGGG
65295601 TATTTTGGTAATTTTAC
66 TATTTTGGTAATTTTAC
* * * * * *
65295618 AAA-CTAGGGGTATTTTGGTGATTTTATAAACCA-AGGGTATTCT-AGTAATTTTACAAACTAGG
1 AAATC-AAGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTGA-TAATTTTACAAACCAGG
**
65295680 GGTATTTTGGTAATTTTGT
64 GGTATTTTGGTAATTTTAC
* * * * * * * *
65295699 AAACCAAGGGTATTTTGGTAATTTTACAAA-TCGATGATATTTGGGTAATTTTATAAACCGGGGG
1 AAATCAAGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTGATAATTTTACAAACCAGGGG
*
65295763 TACTTTGGTAATTTTAC
66 TATTTTGGTAATTTTAC
65295780 AA
1 AA
65295782 TTGGGGGTAT
Statistics
Matches: 203, Mismatches: 34, Indels: 16
0.80 0.13 0.06
Matches are distributed among these distances:
80 2 0.01
81 195 0.96
82 6 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (82 bp):
AAATCAAGGGTATTTTGGTAATTTTACAAACTAGAGGGTATTTTGATAATTTTACAAACCAGGGG
TATTTTGGTAATTTTAC
Found at i:65296853 original size:54 final size:55
Alignment explanation
Indices: 65296764--65296870 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 55
65296754 GGGTGTTACA
* *
65296764 CTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGC
1 CTTATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGC
* *
65296819 CTTATAG-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CTTATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
65296871 ATCTTACCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
54 41 0.85
55 7 0.15
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.37
Consensus pattern (55 bp):
CTTATAGTAACTCATCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGC
Found at i:65296904 original size:47 final size:47
Alignment explanation
Indices: 65296849--65296970 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
65296839 CATGCCTTGG
* * *
65296849 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
65296896 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
*
65296943 CATGGTCATACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
65296971 ATGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
Found at i:65297036 original size:47 final size:47
Alignment explanation
Indices: 65296942--65297061 Score: 136
Period size: 47 Copynumber: 2.5 Consensus size: 47
65296932 CATGTTCCAA
* *
65296942 ACATGGTCATACATGGTATCCTT-GTCTTAATGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGTATCCTTAATC--AATGCCAATGCCACATCTTG
** * **
65296990 ATGTGGTCTTACATGG-AGTCCTTAATCAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGTA-TCCTTAATCAATGCCAATGCCACATCTTG
65297037 ACATGGTCTTACATGGTATCCTTAA
1 ACATGGTCTTACATGGTATCCTTAA
65297062 CCGTCAATTC
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
47 39 0.65
48 19 0.32
49 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTAATCAATGCCAATGCCACATCTTG
Found at i:65297726 original size:30 final size:30
Alignment explanation
Indices: 65297687--65297744 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
65297677 TCCATATGTC
*
65297687 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
* *
65297717 AAACCTTTGCAGAATTACGATTTTGCCC
1 AAACCTTTGCAAAATTACAATTTTGCCC
65297745 GTAGGCTCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (30 bp):
AAACCTTTGCAAAATTACAATTTTGCCCCT
Found at i:65299661 original size:10 final size:11
Alignment explanation
Indices: 65299638--65299679 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
65299628 CAAAAATAAA
65299638 TAAAATATTAT
1 TAAAATATTAT
*
65299649 TAAAATATCTTAA
1 TAAAATA--TTAT
65299662 TAAAATATTAT
1 TAAAATATTAT
65299673 TAAAATA
1 TAAAATA
65299680 ATTTCACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 17 0.63
13 10 0.37
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (11 bp):
TAAAATATTAT
Found at i:65301882 original size:48 final size:48
Alignment explanation
Indices: 65301810--65301940 Score: 183
Period size: 48 Copynumber: 2.7 Consensus size: 48
65301800 TTAGGGGTTA
* *
65301810 CATTGAGTTGGCTTTGGGCCATGATTTTGGCACTTCAGGTGT-GAGATT
1 CATTGAGTTGGCTTCGGGCCATGATATTGGCACTTCAGGT-TCGAGATT
* * * *
65301858 TATTGAGTTGGCTTCGGGCCATGATATTGACACTTCGGGTTCTAGATT
1 CATTGAGTTGGCTTCGGGCCATGATATTGGCACTTCAGGTTCGAGATT
*
65301906 CATTGAGTTGGCTTCGGGCCATGATATTGGTACTT
1 CATTGAGTTGGCTTCGGGCCATGATATTGGCACTT
65301941 AGGGTGCGAG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 72 0.99
ACGTcount: A:0.18, C:0.16, G:0.29, T:0.37
Consensus pattern (48 bp):
CATTGAGTTGGCTTCGGGCCATGATATTGGCACTTCAGGTTCGAGATT
Found at i:65301885 original size:24 final size:24
Alignment explanation
Indices: 65301858--65301934 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
65301848 GTGTGAGATT
65301858 TATTGAGTTGGCTTCGGGCCATGA
1 TATTGAGTTGGCTTCGGGCCATGA
** *
65301882 TATTGA---CACTTCGGGTTC-TAGA
1 TATTGAGTTGGCTTCGGG-CCAT-GA
65301904 TTCATTGAGTTGGCTTCGGGCCATGA
1 -T-ATTGAGTTGGCTTCGGGCCATGA
65301930 TATTG
1 TATTG
65301935 GTACTTAGGG
Statistics
Matches: 39, Mismatches: 6, Indels: 16
0.64 0.10 0.26
Matches are distributed among these distances:
21 8 0.21
22 3 0.08
23 1 0.03
24 15 0.38
25 1 0.03
26 3 0.08
27 8 0.21
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.36
Consensus pattern (24 bp):
TATTGAGTTGGCTTCGGGCCATGA
Found at i:65323717 original size:47 final size:47
Alignment explanation
Indices: 65323609--65323736 Score: 184
Period size: 47 Copynumber: 2.7 Consensus size: 47
65323599 CGAGCGATAT
* * *
65323609 CTTGATTTGGCTAAGGGCCATGGTATAGGTATTTCAGAGAGGAGTTAC
1 CTTGATTTGGCTACGGGCCATGGTATAGGTA-CTCAGAGAGAAGTTAC
* * * *
65323657 CTTAATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATAAGTTAC
1 CTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTAC
65323704 CTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 CTTGATTTGGCTACGGGCCATGGTATAGGTACT
65323737 TATCGATTAT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 43 0.60
48 29 0.40
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.32
Consensus pattern (47 bp):
CTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTAC
Found at i:65325651 original size:53 final size:53
Alignment explanation
Indices: 65325568--65325726 Score: 176
Period size: 53 Copynumber: 3.0 Consensus size: 53
65325558 CCATGGCACC
* * * * *
65325568 AAAGAAGGCCATATCATGTAAGATCGTAACTGGTAGATTATGATACT-ATATAG
1 AAAGAAGACCATATCGTGTAAGATCATAACTGGTGGATTATGACA-TGATATAG
* * * * * *
65325621 AAAGAAGACTATATCGTGTAAGACCATAACTAGTGGCTTATGGCATGATATGG
1 AAAGAAGACCATATCGTGTAAGATCATAACTGGTGGATTATGACATGATATAG
* * *
65325674 AAAGAAGACCATATCGTGTAAGATCATAATTGGTGGATTATGGCATCATATAG
1 AAAGAAGACCATATCGTGTAAGATCATAACTGGTGGATTATGACATGATATAG
65325727 GGAAAATTAA
Statistics
Matches: 87, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
52 1 0.01
53 86 0.99
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.28
Consensus pattern (53 bp):
AAAGAAGACCATATCGTGTAAGATCATAACTGGTGGATTATGACATGATATAG
Found at i:65325937 original size:57 final size:57
Alignment explanation
Indices: 65325849--65325967 Score: 157
Period size: 57 Copynumber: 2.1 Consensus size: 57
65325839 GAAGAAAAGT
* * * * * * *
65325849 CTTTATGGCAAACTTGTTAAATGATAGCCTTTGTTGCAAAACTTTGGAAAGTTAAGC
1 CTTTATGGCAAACTTGTTAAAGGACAACCTTTGTGGAAAAACTCTGGAAAGGTAAGC
* *
65325906 CTTTGTGGCGAACTTGTTAAAGGACAACCTTTGTGGAAAAACTCTGGAAAGGTAAGC
1 CTTTATGGCAAACTTGTTAAAGGACAACCTTTGTGGAAAAACTCTGGAAAGGTAAGC
65325963 CTTTA
1 CTTTA
65325968 AGGTGAACCT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (57 bp):
CTTTATGGCAAACTTGTTAAAGGACAACCTTTGTGGAAAAACTCTGGAAAGGTAAGC
Found at i:65325965 original size:29 final size:27
Alignment explanation
Indices: 65325874--65325966 Score: 71
Period size: 29 Copynumber: 3.3 Consensus size: 27
65325864 GTTAAATGAT
* *
65325874 AGCCTTTGTTGCAAAACTTTGGAAAGTTA
1 AGCCTTTG-TGGAAAAC-TTGGAAAGGTA
** *
65325903 AGCCTTTGTGGCGAACTTGTTAAAGG-A
1 AGCCTTTGTGGAAAACTTG-GAAAGGTA
*
65325930 CAACCTTTGTGGAAAAACTCTGGAAAGGTA
1 -AGCCTTTGTGG-AAAACT-TGGAAAGGTA
65325960 AGCCTTT
1 AGCCTTT
65325967 AAGGTGAACC
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
27 4 0.08
28 19 0.39
29 23 0.47
30 3 0.06
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCCTTTGTGGAAAACTTGGAAAGGTA
Found at i:65325983 original size:57 final size:57
Alignment explanation
Indices: 65325876--65325983 Score: 135
Period size: 57 Copynumber: 1.9 Consensus size: 57
65325866 TAAATGATAG
* * * * ** * *
65325876 CCTTTGTTGCAAAACTTTGGAAAGTTAAGCCTTTGTGGCGAACTTGTTAAAGGACAA
1 CCTTTGTGGAAAAACTCTGGAAAGGTAAGCCTTTAAGGCGAACCTATTAAAGGACAA
*
65325933 CCTTTGTGGAAAAACTCTGGAAAGGTAAGCCTTTAAGGTGAACCTATTAAA
1 CCTTTGTGGAAAAACTCTGGAAAGGTAAGCCTTTAAGGCGAACCTATTAAA
65325984 AAAATGCCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
57 42 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (57 bp):
CCTTTGTGGAAAAACTCTGGAAAGGTAAGCCTTTAAGGCGAACCTATTAAAGGACAA
Found at i:65335912 original size:466 final size:467
Alignment explanation
Indices: 65334391--65336256 Score: 3295
Period size: 466 Copynumber: 4.0 Consensus size: 467
65334381 AAGTCAGTTG
*
65334391 GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTTGGTATAATG
1 GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTCGGTATAATG
* *
65334456 GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTATTGTTTTGTAATCTAGCCATTGGGG
66 GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
65334521 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
131 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
*
65334586 TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATTTCCT
196 TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATATCCT
* *
65334651 TTGATGCATGAGATAATACCACATGATTGATGGAAAAGTTTTATGTAAATATGATGTTGGATTGG
261 TTGATGCATGAGATAATACCACATGATTGAT-GAAAAATTTTATGTGAATATGATGTTGGATTGG
*
65334716 TAAATATATACTTGTGAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGG
325 TAAATATATACTTGTAAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGG
* *
65334781 AAATGACTTTATTTTGTCCACACAGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACAC
390 AAATGGCTTTATTTTGTCCACACGGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACAC
65334846 GACTTGTCCCATT
455 GACTTGTCCCATT
* *
65334859 GAGCAGTTATCACACTATCCACTATCTCATCTTGGTATAAATAGAAATCTCATTTCGGTATAATG
1 GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTCGGTATAATG
*
65334924 GCATGTATAAGCTTATTTAACCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
66 GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
* *
65334989 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTTATATTTTGGTAATCACATAAGTACTTA
131 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
* * *
65335054 TTATGTGTCAGTTTATTGGAGTTATGTTAGCATATATTTTTATGTTAAGAGTAAGTTTATATCCT
196 TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATATCCT
65335119 TTGATGCATGAGATAATACCACATGATTGATGAAAAATTTTATGTGAATATGATGTTGGATTGGT
261 TTGATGCATGAGATAATACCACATGATTGATGAAAAATTTTATGTGAATATGATGTTGGATTGGT
* * *
65335184 AAATATATACTTTTGAGTTTTGGTGTAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGGA
326 AAATATATACTTGTAAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGGA
65335249 AATGGCTTTATTTTGTCCACACGGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACACG
391 AATGGCTTTATTTTGTCCACACGGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACACG
65335314 ACTTGTCCCATT
456 ACTTGTCCCATT
65335326 GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTCGGTATAATG
1 GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTCGGTATAATG
65335391 GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
66 GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
65335456 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
131 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
* *
65335521 TTATGTGTTAGCTTGTTGGAGTTATGTTAGCGTATATGTTTATGTTAAGAGTAAGTTTATATCCT
196 TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATATCCT
*
65335586 TTGATGCATGAGTTAATACCACATGATTGATGAAAAATTTTATGTGAATATGATGTTGGATTGGT
261 TTGATGCATGAGATAATACCACATGATTGATGAAAAATTTTATGTGAATATGATGTTGGATTGGT
*
65335651 AAATATATAC-TGTAAGTTTTGGTGTAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGGA
326 AAATATATACTTGTAAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGGA
* * * *
65335715 AATGGCTTTTTTTTGTCCACATGGGTAGACACATGGGCGTGTGTCTTGGCTGTGTGTGACACACG
391 AATGGCTTTATTTTGTCCACACGGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACACG
*
65335780 ACTTGTCCTATT
456 ACTTGTCCCATT
* * *
65335792 GAGCAGTCATCACACTATCCACTATTTCATTTTGGTATAAATAGAAATCTCATTTTGATATAATG
1 GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTCGGTATAATG
*
65335857 GCATGTATAAGCTTATTTAGCCTATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
66 GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
* *
65335922 TGGCTAGTGATGGTCTGAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACACAAGTGCTTA
131 TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
*
65335987 TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATATTCT
196 TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATATCCT
* * *
65336052 TTGATGCATGAGTTAATACCACATGATTGATGGAAAATTTTATGTGAATATGATGTTGGATTGGA
261 TTGATGCATGAGATAATACCACATGATTGATGAAAAATTTTATGTGAATATGATGTTGGATTGGT
*
65336117 AAATATATAC-TGTAAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTTACAAATGAAGCTAGGA
326 AAATATATACTTGTAAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGGA
* * * * *
65336181 AATGGCTTTATTTCGTCCACACGAGTAGACACATGGGCGTGTATCTTGGCTGTGTGTGACACACG
391 AATGGCTTTATTTTGTCCACACGGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACACG
*
65336246 GCTTGTCCCAT
456 ACTTGTCCCAT
65336257 AGGCATGTGG
Statistics
Matches: 1342, Mismatches: 56, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
466 569 0.42
467 494 0.37
468 279 0.21
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.38
Consensus pattern (467 bp):
GAGCAGTCATCACACTATCCACTATCTCATTTTGGTATAAATAGAAATCTCATTTCGGTATAATG
GCATGTATAAGCTTATTTAGCCAATGATGGCTTGTAATTGTTATTTTGTAATCTAGCCATTGGGG
TGGCTAGTGATGGTCTAAGTTTGGCTATTTTTGAAGTAATATTTTGGTAATCACATAAGTGCTTA
TTATGTGTTAGTTTGTTGGAGTTATGTTAGCATATATGTTTATGTTAAGAGTAAGTTTATATCCT
TTGATGCATGAGATAATACCACATGATTGATGAAAAATTTTATGTGAATATGATGTTGGATTGGT
AAATATATACTTGTAAGTTTTGGTGCAGGAAAATGGTAAGTTTTGGGTGACAAATGAAGCTAGGA
AATGGCTTTATTTTGTCCACACGGGTAGACACACGGGCATGTGTCTTGGCTGTGTGTGACACACG
ACTTGTCCCATT
Found at i:65345144 original size:93 final size:93
Alignment explanation
Indices: 65344985--65345154 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
65344975 CCCCTAAGTG
* * *
65344985 AACTCGAACTGAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
65345050 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
* * *
65345078 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
65345143 GAGTTCGGATGC
66 GAGTTCGGATGC
65345155 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:65345151 original size:46 final size:46
Alignment explanation
Indices: 65344979--65345151 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
65344969 AACCCGCCCC
* * * * * *
65344979 TAAGTGAACTCGAACTGAACTCAATGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
65345025 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCA-TCCA
*
65345076 -CA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
65345118 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65345152 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 57 0.55
47 28 0.27
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:65354678 original size:27 final size:26
Alignment explanation
Indices: 65354637--65354824 Score: 155
Period size: 27 Copynumber: 7.0 Consensus size: 26
65354627 CCCAAATTAA
* * *
65354637 TAAAATGACTATTTTACCTTTATGAGG
1 TAAAATGACTGTTTT-CCCTTATGTGG
65354664 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTT-CCCTTATGTGG
* * *
65354691 TAAAATGATTGTTTTGCTCTTATGTGT
1 TAAAATGACTGTTTT-CCCTTATGTGG
*
65354718 TAAAATG-GTGATTTTCCTCTTATGTGG
1 TAAAATGACTG-TTTTCC-CTTATGTGG
**
65354745 TAAAATGAC-GATTTTTCCCTTATAAGG
1 TAAAATGACTG--TTTTCCCTTATGTGG
*
65354772 TAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACT-GTTTTCCCTTATGTGG
** * *
65354799 TAGGATGACTATTTTGCCCCTATGTG
1 TAAAATGACTGTTTT-CCCTTATGTG
65354825 ATGTATGTTT
Statistics
Matches: 133, Mismatches: 21, Indels: 14
0.79 0.12 0.08
Matches are distributed among these distances:
26 7 0.05
27 120 0.90
28 6 0.05
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.43
Consensus pattern (26 bp):
TAAAATGACTGTTTTCCCTTATGTGG
Found at i:65354714 original size:54 final size:53
Alignment explanation
Indices: 65354637--65354822 Score: 178
Period size: 54 Copynumber: 3.5 Consensus size: 53
65354627 CCCAAATTAA
* * *
65354637 TAAAATGACTATTTTACCTTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACGATTTTGCCCTTATGAGGTAAAATGACTGTTTT-CCCTTATGTGG
* * * * *
65354691 TAAAATGATTG-TTTTGCTCTTATGTGTTAAAATG-GTGATTTTCCTCTTATGTGG
1 TAAAATGA-CGATTTTGCCCTTATGAGGTAAAATGACTG-TTTTCC-CTTATGTGG
* * *
65354745 TAAAATGACGATTTTTCCCTTATAAGGTAAAATGACTATTTTTCCCTTATGTGG
1 TAAAATGACGATTTTGCCCTTATGAGGTAAAATGACT-GTTTTCCCTTATGTGG
** * *
65354799 TAGGATGACTATTTTGCCCCTATG
1 TAAAATGACGATTTTGCCCTTATG
65354823 TGATGTATGT
Statistics
Matches: 104, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
53 5 0.05
54 92 0.88
55 7 0.07
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.42
Consensus pattern (53 bp):
TAAAATGACGATTTTGCCCTTATGAGGTAAAATGACTGTTTTCCCTTATGTGG
Found at i:65354813 original size:81 final size:81
Alignment explanation
Indices: 65354637--65354813 Score: 198
Period size: 81 Copynumber: 2.2 Consensus size: 81
65354627 CCCAAATTAA
** * *
65354637 TAAAATGACTATTTTACCTTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGGTAAAATGATTG
1 TAAAATGACTATTTTACCTTTATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAAATGACTA
* *
65354702 TTTTGCTCTTATGTGT
66 TTTTGCCCTTATGTGG
* * *
65354718 TAAAATG-GTGATTTT-CCTCTTATGTGGTAAAATGAC-GATTTTTCCCTTATAAGGTAAAATGA
1 TAAAATGACT-ATTTTACCT-TTATGAGGTAAAATGACTG-TTTTGCCCTTATAAGGTAAAATGA
*
65354780 CTATTTTTCCCTTATGTGG
63 CTATTTTGCCCTTATGTGG
**
65354799 TAGGATGACTATTTT
1 TAAAATGACTATTTT
65354814 GCCCCTATGT
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
80 5 0.06
81 73 0.92
82 1 0.01
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.44
Consensus pattern (81 bp):
TAAAATGACTATTTTACCTTTATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAAATGACTA
TTTTGCCCTTATGTGG
Found at i:65358825 original size:21 final size:20
Alignment explanation
Indices: 65358797--65358847 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
65358787 CTGTTACTGA
65358797 TGATATGAATAAGATATGTGT
1 TGATATGAATAAGATAT-TGT
* * *
65358818 TTATATGAATGAGTTATTGT
1 TGATATGAATAAGATATTGT
65358838 TGATATGAAT
1 TGATATGAAT
65358848 GAATTACTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.35, C:0.00, G:0.22, T:0.43
Consensus pattern (20 bp):
TGATATGAATAAGATATTGT
Found at i:65358843 original size:20 final size:21
Alignment explanation
Indices: 65358797--65358849 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
65358787 CTGTTACTGA
*
65358797 TGATATGAATAAGATATGTGT
1 TGATATGAATGAGATATGTGT
* *
65358818 TTATATGAATGAGTTAT-TGT
1 TGATATGAATGAGATATGTGT
65358838 TGATATGAATGA
1 TGATATGAATGA
65358850 ATTACTGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.42
Consensus pattern (21 bp):
TGATATGAATGAGATATGTGT
Found at i:65358858 original size:20 final size:20
Alignment explanation
Indices: 65358815--65358906 Score: 71
Period size: 20 Copynumber: 4.6 Consensus size: 20
65358805 ATAAGATATG
** *
65358815 TGTTTATATGAATGAGTTAT
1 TGTTTATATGAATGAACTAC
* *
65358835 TGTTGATATGAATGAATTAC
1 TGTTTATATGAATGAACTAC
*
65358855 TG-TTATTACTG-ATGAACTAT
1 TGTTTA-TA-TGAATGAACTAC
*
65358875 TGTTTATATGGATGAACTAC
1 TGTTTATATGAATGAACTAC
* *
65358895 TGGTAATATGAA
1 TGTTTATATGAA
65358907 GGAAATTATA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
19 4 0.07
20 49 0.84
21 5 0.09
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.42
Consensus pattern (20 bp):
TGTTTATATGAATGAACTAC
Found at i:65359154 original size:29 final size:29
Alignment explanation
Indices: 65359068--65359154 Score: 131
Period size: 29 Copynumber: 3.0 Consensus size: 29
65359058 ATATATGTGA
*
65359068 ATTGAGATATAGGTGGTTTAACCAAATAT
1 ATTGAGATATAGGTGGTTTAACCACATAT
* *
65359097 ATTGAGATATAAGT-GTTTAACCACTTAT
1 ATTGAGATATAGGTGGTTTAACCACATAT
*
65359125 ATTGAGATATAGGTGGTTTAACCACGTAT
1 ATTGAGATATAGGTGGTTTAACCACATAT
65359154 A
1 A
65359155 CACCCATTAG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
28 25 0.48
29 27 0.52
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.36
Consensus pattern (29 bp):
ATTGAGATATAGGTGGTTTAACCACATAT
Found at i:65379467 original size:130 final size:129
Alignment explanation
Indices: 65379235--65379473 Score: 302
Period size: 130 Copynumber: 1.8 Consensus size: 129
65379225 AGAATGCTTA
* * * *
65379235 AAAATGAAGACGATGTTCAATGTTTGGCGATTGAGAATCGTGCCCTATTGTGCTGGGTTGCACTT
1 AAAATGAAGACGATGTTCAATGTTTGGCAATTAAGAATCGAGCCCTATCGTGCTGGGTTGCACTT
* * *
65379300 TTTCATTGGTTCGAAACAATTGAACATCCCTACGGAATTTCACTCACATTTCCTAAAATCTTTC
66 TTTCATTGGTCCAAAACAATCGAACATCCCTACGGAATTTCACTCACATTTCCTAAAATCTTTC
* * * *
65379364 AAAATGAAGGCGATGTTCGATGTTTGGCAATTTAAGAATCGAGCCCTATCGTGTTGGGTTGCGCT
1 AAAATGAAGACGATGTTCAATGTTTGGCAA-TTAAGAATCGAGCCCTATCGTGCTGGGTTGCACT
* * * *
65379429 TTCTT-ATTTGTCCAAAATAATCGAATATCTCCT-TGGAATTTCACT
65 TT-TTCATTGGTCCAAAACAATCGAACATC-CCTACGGAATTTCACT
65379474 TATATTCTCT
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
129 27 0.29
130 60 0.65
131 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (129 bp):
AAAATGAAGACGATGTTCAATGTTTGGCAATTAAGAATCGAGCCCTATCGTGCTGGGTTGCACTT
TTTCATTGGTCCAAAACAATCGAACATCCCTACGGAATTTCACTCACATTTCCTAAAATCTTTC
Found at i:65382605 original size:20 final size:21
Alignment explanation
Indices: 65382568--65382612 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
65382558 ATTGATGCCT
65382568 CATTTGCATTCATGCATT-TG
1 CATTTGCATTCATGCATTATG
*
65382588 CATTTGCA-TCATATCATTATG
1 CATTTGCATTCAT-GCATTATG
65382609 CATT
1 CATT
65382613 AAAGGCCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 4 0.18
20 12 0.55
21 6 0.27
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.44
Consensus pattern (21 bp):
CATTTGCATTCATGCATTATG
Found at i:65390358 original size:93 final size:93
Alignment explanation
Indices: 65390245--65390416 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
65390235 CGCCCATAAG
* * * *
65390245 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGATTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
65390310 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
65390338 CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
65390403 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65390417 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65390413 original size:46 final size:46
Alignment explanation
Indices: 65390238--65390413 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
65390228 TGTAACCCGC
* * *
65390238 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
65390284 CCATAAGTGAACTCGGATTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
65390334 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
65390377 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65390414 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:65405871 original size:25 final size:24
Alignment explanation
Indices: 65405837--65405883 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
65405827 TGTACGCTAC
65405837 CAATCAAACGAG-AATAACATCAATT
1 CAATCAAACG-GTAA-AACATCAATT
65405862 CAATCAAACGGTAAAACATCAA
1 CAATCAAACGGTAAAACATCAA
65405884 AATCGCCGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.17
Consensus pattern (24 bp):
CAATCAAACGGTAAAACATCAATT
Found at i:65408861 original size:36 final size:36
Alignment explanation
Indices: 65408820--65408946 Score: 127
Period size: 36 Copynumber: 3.4 Consensus size: 36
65408810 TGCTTCGGGT
65408820 CTTAGCCAGAATATAGTCATACATAAATGCCTTCGGA
1 CTTAGCCAG-ATATAGTCATACATAAATGCCTTCGGA
* *
65408857 -TTAGCCAGATATAGTTGCA-GCACAAATGCCTTCGGGA
1 CTTAGCCAGATATAG-T-CATACATAAATGCCTTC-GGA
* *
65408894 CTTAGCCCGGGTATAGTCACTAGCATAAATGCC-TCGGA
1 CTTAG-CCAGATATAGTCA-TA-CATAAATGCCTTCGGA
65408932 CTTAGCC-GATATAGT
1 CTTAGCCAGATATAGT
65408947 AACCGGCCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
35 6 0.08
36 28 0.37
37 9 0.12
38 13 0.17
39 10 0.13
40 9 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (36 bp):
CTTAGCCAGATATAGTCATACATAAATGCCTTCGGA
Found at i:65408898 original size:74 final size:74
Alignment explanation
Indices: 65408808--65408946 Score: 194
Period size: 74 Copynumber: 1.9 Consensus size: 74
65408798 CAACTCGCAT
*
65408808 AATGCTTCGGGTCTTAGCCAGAATATAGTCA-TA-CATAAATGCCTTCGGA-TTAGCCAGATATA
1 AATGCTTCGGGACTTAGCCAGAATATAGTCACTAGCATAAATGCC-TCGGACTTAGCC-GATATA
65408870 GTTGCAGCACA
64 GTTGCAGCACA
* **
65408881 AATGCCTTCGGGACTTAGCCCGGGTATAGTCACTAGCATAAATGCCTCGGACTTAGCCGATATAG
1 AATG-CTTCGGGACTTAGCCAGAATATAGTCACTAGCATAAATGCCTCGGACTTAGCCGATATAG
65408946 T
65 T
65408947 AACCGGCCAC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
73 4 0.07
74 23 0.40
75 15 0.26
76 16 0.28
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (74 bp):
AATGCTTCGGGACTTAGCCAGAATATAGTCACTAGCATAAATGCCTCGGACTTAGCCGATATAGT
TGCAGCACA
Found at i:65408969 original size:38 final size:37
Alignment explanation
Indices: 65408844--65408979 Score: 125
Period size: 38 Copynumber: 3.6 Consensus size: 37
65408834 AGTCATACAT
**
65408844 AAATGCCTTCGGA-TTAGCCAGATATAGTTGCAGCAC
1 AAATGCCTTCGGACTTAGCCAGATATAGTACCAGCAC
* * * *
65408880 AAATGCCTTCGGGACTTAGCCCGGGTATAGTCACTAGCAT
1 AAATGCCTTC-GGACTTAG-CCAGATATAGT-ACCAGCAC
*
65408920 AAATGCC-TCGGACTTAGCC-GATATAGTAACCGGCCAC
1 AAATGCCTTCGGACTTAGCCAGATATAGT-ACCAG-CAC
*
65408957 AAATGCCTTCGGATTTAGTCCAG
1 AAATGCCTTCGGACTTAG-CCAG
65408980 TTATCAATCC
Statistics
Matches: 80, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
36 20 0.25
37 14 0.17
38 21 0.26
39 13 0.16
40 12 0.15
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (37 bp):
AAATGCCTTCGGACTTAGCCAGATATAGTACCAGCAC
Found at i:65413780 original size:15 final size:14
Alignment explanation
Indices: 65413745--65413782 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
65413735 AAGAATCCAA
65413745 AGAT-AAGAAATCC
1 AGATAAAGAAATCC
65413758 AGATAAAGAAATCC
1 AGATAAAGAAATCC
65413772 AGAATAAAGAA
1 AG-ATAAAGAA
65413783 CTAGATACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 4 0.17
14 11 0.48
15 8 0.35
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.13
Consensus pattern (14 bp):
AGATAAAGAAATCC
Found at i:65418488 original size:1 final size:1
Alignment explanation
Indices: 65418484--65418528 Score: 81
Period size: 1 Copynumber: 45.0 Consensus size: 1
65418474 GGCCCCCGCT
*
65418484 GGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
65418529 TGCTTGACGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.02, G:0.98, T:0.00
Consensus pattern (1 bp):
G
Found at i:65428724 original size:40 final size:40
Alignment explanation
Indices: 65428680--65428855 Score: 262
Period size: 40 Copynumber: 4.4 Consensus size: 40
65428670 ATCGCAACTC
*
65428680 GCATAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTA
1 GCATAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
**
65428720 GCATAAATGCCTTCGGGACTTAGCCCAGATATAGTTGCTA
1 GCATAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
* * *
65428760 GCACAAATGCCTTCGGGACTTAGCCCGGGTATAGTCACTA
1 GCATAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
* * *
65428800 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTC
1 GCATAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
*
65428840 GCACAAATGCCTTCGG
1 GCATAAATGCCTTCGG
65428856 ATCTTAGTCC
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 123 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
GCATAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
Found at i:65428862 original size:40 final size:40
Alignment explanation
Indices: 65428651--65428855 Score: 259
Period size: 40 Copynumber: 5.2 Consensus size: 40
65428641 ACCCAAGTAT
* * * * *
65428651 CTTCGGGATTTAG-GCGGATATCGCAACTCGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCATAAATGC
* * *
65428690 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCATAAATGC
* ** *
65428730 CTTCGGGACTTAGCCCAGATATAGTTGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCATAAATGC
* *
65428770 CTTCGGGACTTAGCCCGGGTATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCATAAATGC
* *
65428810 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCATAAATGC
65428850 CTTCGG
1 CTTCGG
65428856 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 11 0.08
40 133 0.92
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCATAAATGC
Found at i:65431174 original size:46 final size:46
Alignment explanation
Indices: 65431005--65431180 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
65430995 TGTAACCCGC
* * * ***
65431005 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGTGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
65431051 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGTATTCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
65431101 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
65431144 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65431181 TGCCTAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 1 0.01
46 59 0.56
47 27 0.25
50 7 0.07
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:65431199 original size:46 final size:46
Alignment explanation
Indices: 65431056--65431199 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 46
65431046 TGCATCCATG
* ** *
65431056 AGTGAACTCGGACTCAACTCAACGAGTTCGTATTCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA-TCCTAAATATC--CTA
** * ****
65431104 A-CAAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTAAATATCC-TA
65431149 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAAATATCCT-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAT-CCTAAATATCCTA
65431195 AGTGA
1 AGTGA
65431200 CATGTCACTT
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
44 1 0.01
45 5 0.07
46 34 0.45
47 28 0.37
48 7 0.09
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTAAATATCCTA
Found at i:65433588 original size:15 final size:15
Alignment explanation
Indices: 65433562--65433617 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
65433552 AACAAGAAAC
65433562 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
65433577 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
65433592 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
65433607 GAATAAAGAAA
1 GAATAAAGAAA
65433618 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:65436703 original size:93 final size:93
Alignment explanation
Indices: 65436544--65436716 Score: 269
Period size: 93 Copynumber: 1.9 Consensus size: 93
65436534 CAACCATAAG
* *
65436544 CGAACTCGGACTCAACTCAATGAGCTCAGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65436609 ACGAGTTCGCATGCCTAGTTACATCTCA
66 ACGAGTTCGCATGCCTAGTTACATCTCA
* *
65436637 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAA-TGCGGACTCAACT
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACT-CGGACTCAACT
*
65436700 CAACGAGTTCGGATGCC
64 CAACGAGTTCGCATGCC
65436717 CAAATATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 3 0.04
93 70 0.96
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGCATGCCTAGTTACATCTCA
Found at i:65436710 original size:46 final size:46
Alignment explanation
Indices: 65436537--65436712 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
65436527 TGTAACCCAA
* * *
65436537 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCAT
* * * * *
65436583 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGCATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG---GAC-ATTTGCAT
*
65436633 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
65436676 CCATAAGTGAA-TGCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACT-CGGACTCAACTCAACGAGTTCGGA
65436713 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 4 0.04
46 57 0.53
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:65442187 original size:20 final size:21
Alignment explanation
Indices: 65442162--65442200 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
65442152 CACTTGAATC
65442162 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
65442182 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
65442201 ATCACTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:65443392 original size:65 final size:65
Alignment explanation
Indices: 65443277--65443408 Score: 210
Period size: 65 Copynumber: 2.0 Consensus size: 65
65443267 TTTGGAATAC
* * * * *
65443277 TATCAAATATTCATTAAACCTCAAACATAGGGTATGATGTCGATGCCATGTCCTAGACATGGTCT
1 TATCAAATATTCACTAAACCTCAAACATAAGGTATGATGCCAATGACATGTCCTAGACATGGTCT
*
65443342 TATCAAATATTCACTAAACCTCAAACATAAGGTATGTTGCCAATGACATGTCCTAGACATGGTCT
1 TATCAAATATTCACTAAACCTCAAACATAAGGTATGATGCCAATGACATGTCCTAGACATGGTCT
65443407 TA
1 TA
65443409 CTCTGGCTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (65 bp):
TATCAAATATTCACTAAACCTCAAACATAAGGTATGATGCCAATGACATGTCCTAGACATGGTCT
Found at i:65451160 original size:47 final size:45
Alignment explanation
Indices: 65451057--65451184 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 45
65451047 CTTACGAGGT
* *
65451057 CGATGCATGTCCCAGACACGTCTTACACTAGCTCTTATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-CTCAATGC
65451103 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-T-AATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACTCAA--T-GC
* *
65451151 TGATGCATGTCCCAGACATGTCTCACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
65451185 ACAATAGCCC
Statistics
Matches: 73, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
45 2 0.03
46 20 0.27
47 28 0.38
48 23 0.32
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACTCAATGC
Found at i:65455330 original size:21 final size:21
Alignment explanation
Indices: 65455300--65455388 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
65455290 CTCACAAAGA
* *
65455300 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
65455320 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
65455341 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
65455362 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
65455386 AAA
1 AAA
65455389 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:65455381 original size:24 final size:21
Alignment explanation
Indices: 65455300--65455368 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
65455290 CTCACAAAGA
* * *
65455300 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
65455320 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
65455341 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
65455362 AAAAAGA
1 AAAAAGA
65455369 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:65457872 original size:16 final size:16
Alignment explanation
Indices: 65457851--65457890 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
65457841 CTCTATTCCT
65457851 TAGGTTCGGAGGTCAA
1 TAGGTTCGGAGGTCAA
65457867 TAGGTTCGGAGGTCAA
1 TAGGTTCGGAGGTCAA
65457883 TAGGTTCG
1 TAGGTTCG
65457891 TGACATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.23, C:0.12, G:0.38, T:0.28
Consensus pattern (16 bp):
TAGGTTCGGAGGTCAA
Found at i:65464624 original size:11 final size:11
Alignment explanation
Indices: 65464551--65464626 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
65464541 ATTCCAAAAA
*
65464551 TAATATTATTT
1 TAATATTAATT
65464562 TAATAGTTTAATAT
1 TAATA--TTAAT-T
65464576 TAA-ATTAAATT
1 TAATATT-AATT
*
65464587 TAATACTTATTT
1 TAATA-TTAATT
*
65464599 TAATAGT-ATT
1 TAATATTAATT
65464609 T--TATTAATT
1 TAATATTAATT
65464618 TAATATTAA
1 TAATATTAA
65464627 AGTGATTAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 18 0.35
12 12 0.24
13 7 0.14
14 4 0.08
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:65468285 original size:28 final size:28
Alignment explanation
Indices: 65468252--65468344 Score: 118
Period size: 28 Copynumber: 3.3 Consensus size: 28
65468242 ATTGCATGAC
65468252 TATGAATATGATTGGGCCTGATGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
65468280 TATGAATATGATTGGGACC-GATGGGCCA
1 TATGAATATGATTGGG-CCTGATGGGCCA
* *
65468308 TATGAATGA-GATTGGGCCTAAAGGGGCCA
1 TATGAAT-ATGATTGGGCCT-GATGGGCCA
*
65468337 AATGAATA
1 TATGAATA
65468345 AGTGTGGATC
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
27 2 0.03
28 40 0.69
29 16 0.28
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (28 bp):
TATGAATATGATTGGGCCTGATGGGCCA
Found at i:65471787 original size:29 final size:30
Alignment explanation
Indices: 65471728--65471788 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
65471718 ATGAATCGGA
*
65471728 AGCTTTGGCACTAAGTGTACGATTTAAACT
1 AGCTTGGGCACTAAGTGTACGATTTAAACT
*
65471758 AGCTTGGGCACTAAGTGTGCGATTT-AACT
1 AGCTTGGGCACTAAGTGTACGATTTAAACT
65471787 AG
1 AG
65471789 TTTCGACTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 6 0.21
30 23 0.79
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (30 bp):
AGCTTGGGCACTAAGTGTACGATTTAAACT
Found at i:65479056 original size:29 final size:30
Alignment explanation
Indices: 65478997--65479057 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
65478987 ATGAATCGAA
*
65478997 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTGGGCACTAAGTGTGCGATTTAAACT
65479027 AGCTTGGGCACTAAGTGTGCGATTT-AACT
1 AGCTTGGGCACTAAGTGTGCGATTTAAACT
65479056 AG
1 AG
65479058 TTTCGGCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (30 bp):
AGCTTGGGCACTAAGTGTGCGATTTAAACT
Found at i:65483472 original size:15 final size:17
Alignment explanation
Indices: 65483442--65483473 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
65483432 TTGATACTTG
65483442 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
65483459 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
65483474 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:65492952 original size:16 final size:16
Alignment explanation
Indices: 65492933--65492963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65492923 CTTCTTCACT
65492933 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
65492949 TACTTACTTACTTAA
1 TACTCACTTACTTAA
65492964 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:65492969 original size:20 final size:20
Alignment explanation
Indices: 65492930--65492969 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65492920 AAACTTCTTC
* *
65492930 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
65492950 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
65492970 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:65493289 original size:53 final size:54
Alignment explanation
Indices: 65493199--65493415 Score: 235
Period size: 55 Copynumber: 4.0 Consensus size: 54
65493189 TACGTGGTAT
* * *
65493199 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * * * *
65493253 GCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTG
* * * * *
65493306 CCTTATGGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
*
65493361 CCTTA-GAAACCTTACCAATTGCCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTG
65493416 AACCCTAATG
Statistics
Matches: 133, Mismatches: 23, Indels: 13
0.79 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 46 0.35
54 14 0.11
55 71 0.53
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:65493351 original size:108 final size:110
Alignment explanation
Indices: 65493207--65493407 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
65493197 ATCCTTTTGA
* * *
65493207 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGGCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
* *
65493270 -TGCCATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATGGT
65 TTGCCATACCTTAGCATGGTCTTACATGGGACATTTGCCTTATGGT
* * *
65493315 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
65493380 TGCCATACCTTAGCATGGTCTTACATGG
66 TGCCATACCTTAGCATGGTCTTACATGG
65493408 TATCCTTGAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATACCTTAGCATGGTCTTACATGGGACATTTGCCTTATGGT
Found at i:65500420 original size:16 final size:16
Alignment explanation
Indices: 65500401--65500431 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65500391 CTTCTTCACT
65500401 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
65500417 TACTTACTTACTTAA
1 TACTCACTTACTTAA
65500432 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:65500437 original size:20 final size:20
Alignment explanation
Indices: 65500398--65500437 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65500388 AAACTTCTTC
* *
65500398 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
65500418 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
65500438 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:65500818 original size:55 final size:53
Alignment explanation
Indices: 65500628--65500882 Score: 245
Period size: 55 Copynumber: 4.8 Consensus size: 53
65500618 ACACGGGTAC
* * * * *
65500628 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* *
65500677 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
65500730 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
65500785 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
*
65500838 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
65500883 AACCCTAATG
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 35 0.20
52 2 0.01
53 47 0.27
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:65500819 original size:108 final size:110
Alignment explanation
Indices: 65500675--65500875 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
65500665 ATCCTTTTGA
* *
65500675 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
65500738 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
65500783 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
65500848 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
65500876 TATCCTTAAC
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 28 0.33
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:65507994 original size:16 final size:16
Alignment explanation
Indices: 65507975--65508005 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65507965 CTTCTTCACT
65507975 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
65507991 TACTTACTTACTTAA
1 TACTCACTTACTTAA
65508006 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:65508011 original size:20 final size:20
Alignment explanation
Indices: 65507972--65508011 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
65507962 AAACTTCTTC
* *
65507972 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
65507992 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
65508012 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:65508392 original size:55 final size:53
Alignment explanation
Indices: 65508202--65508456 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 53
65508192 ACACGGGTAC
* * * * *
65508202 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
65508251 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
65508304 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* ***
65508359 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* *
65508412 CCTTACCAATTGCCATGCCTT-AGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTT
65508457 AAACCCTAAT
Statistics
Matches: 174, Mismatches: 20, Indels: 18
0.82 0.09 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 11 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:65508393 original size:108 final size:110
Alignment explanation
Indices: 65508249--65508449 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
65508239 ATCCTTTTGA
* *
65508249 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
65508312 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
65508357 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
65508422 TGCCATGCCTTAGCATGGTCTTACATGG
66 TGCCATGCCTTAGCATGGTCTTACATGG
65508450 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 7 0.08
110 27 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:65517013 original size:46 final size:47
Alignment explanation
Indices: 65516926--65517022 Score: 135
Period size: 46 Copynumber: 2.1 Consensus size: 47
65516916 TACATGAATT
*
65516926 ATTCCTGTCTCCAATGCCATATATATCTAATATGGGATTACATAGCTC
1 ATTCCTGTCTCCAAAGCCA-ATATATCTAATATGGGATTACATAGCTC
* *
65516974 ATTCCTGTCTCCAAAGCC-ATATATCTGATAT-GGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCAATATATCTAATATGGGA-TTACATAGCTC
65517020 ATT
1 ATT
65517023 TCTATCCTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
45 3 0.07
46 25 0.56
48 17 0.38
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (47 bp):
ATTCCTGTCTCCAAAGCCAATATATCTAATATGGGATTACATAGCTC
Found at i:65522680 original size:68 final size:70
Alignment explanation
Indices: 65522608--65522737 Score: 165
Period size: 71 Copynumber: 1.9 Consensus size: 70
65522598 ATACTATGTA
* * * * * *
65522608 GTAGCTAGGTCATATGTGTGA-T-ACGGGATGTATCCCATGTAGACAAGAGAGCTACGAGAGAGA
1 GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGATACCATGTAGACAAGAGAGCTACGAGAGAGA
65522671 TAAAT
66 TAAAT
* *
65522676 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGATACCATGTAGACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGCGTGATT-CAAGGGAAGGATACCATGTAGACAAGAGAGCTACGAGA
65522738 CAAATCGGTT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
68 18 0.35
69 1 0.02
71 32 0.63
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (70 bp):
GTAGCTAGGTCACATGCGTGATTCAAGGGAAGGATACCATGTAGACAAGAGAGCTACGAGAGAGA
TAAAT
Found at i:65531054 original size:13 final size:13
Alignment explanation
Indices: 65531038--65531062 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65531028 AAAAAAATAT
65531038 AAATATTAAATTG
1 AAATATTAAATTG
65531051 AAATATTAAATT
1 AAATATTAAATT
65531063 TACCGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATATTAAATTG
Found at i:65537665 original size:31 final size:31
Alignment explanation
Indices: 65537630--65537692 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
65537620 GCCTAAAATA
*
65537630 AAATTAATTGAACAATTGAGTAACTATTCTT
1 AAATTAATTCAACAATTGAGTAACTATTCTT
65537661 AAATTAATTCAACAATTGAGTAACTATTCTT
1 AAATTAATTCAACAATTGAGTAACTATTCTT
65537692 A
1 A
65537693 CACTTTAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (31 bp):
AAATTAATTCAACAATTGAGTAACTATTCTT
Found at i:65539499 original size:15 final size:15
Alignment explanation
Indices: 65539479--65539510 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
65539469 ATCTTTCATG
65539479 TTAAGTTAAGCTTTA
1 TTAAGTTAAGCTTTA
65539494 TTAAGTTAAGCTTTA
1 TTAAGTTAAGCTTTA
65539509 TT
1 TT
65539511 TGATAAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (15 bp):
TTAAGTTAAGCTTTA
Found at i:65543919 original size:11 final size:11
Alignment explanation
Indices: 65543903--65543931 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
65543893 TATACATATA
65543903 TTTTTTTT-AC
1 TTTTTTTTCAC
65543913 TTTTTTTTCAC
1 TTTTTTTTCAC
65543924 TTTTTTTT
1 TTTTTTTT
65543932 GAATTATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTTCAC
Found at i:65548363 original size:46 final size:45
Alignment explanation
Indices: 65548213--65548438 Score: 197
Period size: 46 Copynumber: 4.9 Consensus size: 45
65548203 ACATGTTGAT
* * * * *
65548213 GCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCACATATTCGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-ACAT-CTCGA
65548263 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCG-A
* * *
65548307 CCCGATGCATGTTCCAGACATGTCTTACACTTGCTTACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
* * ** * *
65548352 GGCCGATGCATGTCCCAAACATGTCTTGCACTAGCTCT-TGTTTCAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA
* * *
65548398 TGTCGATGCATGTCCCAGACATGTCTTACACTGGCTCACAT
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACAT
65548439 AACAACAATG
Statistics
Matches: 145, Mismatches: 25, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
43 3 0.02
44 35 0.24
45 1 0.01
46 74 0.51
47 1 0.01
48 12 0.08
49 12 0.08
50 7 0.05
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
Found at i:65548767 original size:9 final size:9
Alignment explanation
Indices: 65548753--65548779 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
65548743 TTTTCAAGTA
65548753 TAATAACAT
1 TAATAACAT
65548762 TAATAACAT
1 TAATAACAT
65548771 TAATAACAT
1 TAATAACAT
65548780 GCTTATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
TAATAACAT
Found at i:65555549 original size:31 final size:31
Alignment explanation
Indices: 65555511--65555573 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
65555501 CCCGTGTGGA
65555511 CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
1 CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
*
65555542 CTGTGTAGATCTTGAAAGTAGCTCGTCTTGT
1 CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
65555573 C
1 C
65555574 CGATTTTGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (31 bp):
CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
Found at i:65560602 original size:46 final size:46
Alignment explanation
Indices: 65560530--65560621 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
65560520 ACAACCTGAA
*
65560530 ATCATGCCAAATTTGTTCATTTGGGTTATGACAGAGTCCTCTGGAT
1 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
65560576 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
1 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
65560622 GTCCGTAATC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (46 bp):
ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
Found at i:65561735 original size:43 final size:43
Alignment explanation
Indices: 65561679--65561877 Score: 335
Period size: 43 Copynumber: 4.6 Consensus size: 43
65561669 TCAGCATCAT
* **
65561679 AGCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCATGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
*
65561722 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
* *
65561765 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACAGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
65561808 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
*
65561851 AGCCTGCTAGGCACGAAGGCCCAAATA
1 AGCCTGCTAGGCACGAAGGCCCGAATA
65561878 TAATACCAGC
Statistics
Matches: 148, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 148 1.00
ACGTcount: A:0.33, C:0.33, G:0.24, T:0.10
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
Found at i:65582491 original size:27 final size:27
Alignment explanation
Indices: 65582417--65582522 Score: 97
Period size: 27 Copynumber: 3.9 Consensus size: 27
65582407 TCATACGAAC
* * *
65582417 ATAAGGGCATAATC-GTCATTCTACCAT
1 ATAAGGGCATTA-CGGTCATTTTACCCT
* * *
65582444 ACAGGGGTATTACGGTCATTTTACCCT
1 ATAAGGGCATTACGGTCATTTTACCCT
*
65582471 ATAAGGGCATTACGGTCATTTTACACT
1 ATAAGGGCATTACGGTCATTTTACCCT
* * * *
65582498 ATAAGGGTATTTCGATAATTTTACC
1 ATAAGGGCATTACGGTCATTTTACC
65582523 AATATTAGGG
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
26 1 0.02
27 62 0.98
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (27 bp):
ATAAGGGCATTACGGTCATTTTACCCT
Done.