Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 203 of 290
Found at i:65583074 original size:51 final size:51
Alignment explanation
Indices: 65583001--65583103 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 51
65582991 ACGTGCGTTT
* *
65583001 GCACGCTTATGAGGCCCTGAATGCCGAGGTTTTGGCTTTTC-AGCTTTTGCC
1 GCACGCTTATGAGGCCCCGAATGCCGAGGTTTTAGCTTTTCGA-CTTTTGCC
*
65583052 GCACGCTTGTGAGGCCCCGAATGCCGAGGTTTTAGCTTTTCGACTTTTGCC
1 GCACGCTTATGAGGCCCCGAATGCCGAGGTTTTAGCTTTTCGACTTTTGCC
65583103 G
1 G
65583104 ACTTCCAACA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
51 47 0.98
52 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.28, T:0.32
Consensus pattern (51 bp):
GCACGCTTATGAGGCCCCGAATGCCGAGGTTTTAGCTTTTCGACTTTTGCC
Found at i:65593001 original size:46 final size:46
Alignment explanation
Indices: 65592930--65593050 Score: 172
Period size: 46 Copynumber: 2.7 Consensus size: 46
65592920 CACCCCTAAG
* * *
65592930 TGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAA
* * *
65592976 TGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAA
*
65593022 TGAACT-GGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGCTCGGA
65593051 TGCTCAACCA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 21 0.31
46 46 0.69
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAA
Found at i:65604697 original size:28 final size:27
Alignment explanation
Indices: 65604652--65604709 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
65604642 TTATTCAGTA
* * *
65604652 ACAGTACAGTTTGGGCCTTAGCCCTAT
1 ACAGTACAGTGTGGGCCTAAGCCCAAT
65604679 ACAGTAACAGTGTGGGCCTAAGCCCAAT
1 ACAGT-ACAGTGTGGGCCTAAGCCCAAT
65604707 ACA
1 ACA
65604710 ATATCAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (27 bp):
ACAGTACAGTGTGGGCCTAAGCCCAAT
Found at i:65604717 original size:28 final size:28
Alignment explanation
Indices: 65604657--65604717 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
65604647 CAGTAACAGT
* * * *
65604657 ACAGTTTGGGCCTTAGCCCTATACAGTA
1 ACAGTGTGGGCCTAAGCCCAATACAATA
65604685 ACAGTGTGGGCCTAAGCCCAATACAATA
1 ACAGTGTGGGCCTAAGCCCAATACAATA
*
65604713 TCAGT
1 ACAGT
65604718 ATAGTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCCCAATACAATA
Found at i:65605098 original size:27 final size:27
Alignment explanation
Indices: 65605067--65605423 Score: 410
Period size: 27 Copynumber: 13.3 Consensus size: 27
65605057 TGTCATAATT
* * *
65605067 GTCATTTTAACATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
65605094 GTCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
65605121 GTCATTTTACCCTACAAGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* ** *
65605148 ATCATTTTACCCTACAGGGATATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
*
65605175 GTCATTTTACCTTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
65605202 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * *
65605229 ATTATTTTTCCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
65605256 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
65605283 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
65605310 ATCATTTTACCCTACAAGAGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
65605337 ATCATTTTATCCTACA-GGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
65605363 ATCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* **
65605390 GTCATTTTACCCTATAAAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
65605417 ATCATTT
1 GTCATTT
65605424 AACTAATTTT
Statistics
Matches: 287, Mismatches: 42, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 23 0.08
27 264 0.92
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:65608724 original size:45 final size:45
Alignment explanation
Indices: 65608633--65608810 Score: 143
Period size: 45 Copynumber: 4.0 Consensus size: 45
65608623 TAGGATTTTG
* * * * * *
65608633 ATATGTATTTTTGAGTAAGACCACGTTTGGGACGTTGGAAAT-GAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGG-CATCGAT
*
65608678 ATATGTGTTTTCGTGTAAGACCACGTCTGGAACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
* * * * *
65608723 ATATGTGGTTACGTGTAAAACCATGTCTGGGACATCGGCATCG-T
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
*** * *
65608767 AT-T-ACATTT-GAGTAAGACC-CTGTCTGGGACAGTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT
65608809 AT
1 AT
65608811 GAGATAGCAC
Statistics
Matches: 108, Mismatches: 22, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
41 25 0.23
42 5 0.05
43 1 0.01
44 5 0.05
45 72 0.67
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
Found at i:65618631 original size:112 final size:111
Alignment explanation
Indices: 65618476--65618688 Score: 345
Period size: 112 Copynumber: 1.9 Consensus size: 111
65618466 ACCTGGAAGT
* *
65618476 ATATGTGGCATCGATATGTGACTTTGATATAAGTGTGCGAGTAAGTCCACATTTAATACGTTGGC
1 ATATGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGC
* *
65618541 ATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTTTC
66 ATCGATATGTGATTCCGATATATGTGTACGAGTAAGTCTACGTTTC
* * *
65618587 ATATGTTGGCATCGATATGTGACTCTGGTATATGTGTGCGAGTAAGACCACGTTTAATACGTTGG
1 ATATG-TGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGG
*
65618652 CATCGATATGTGATTTCGATATATGTGTACGAGTAAG
65 CATCGATATGTGATTCCGATATATGTGTACGAGTAAG
65618689 ACCTTGTATG
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
111 5 0.05
112 88 0.95
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.35
Consensus pattern (111 bp):
ATATGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGC
ATCGATATGTGATTCCGATATATGTGTACGAGTAAGTCTACGTTTC
Found at i:65618689 original size:56 final size:56
Alignment explanation
Indices: 65618481--65618691 Score: 282
Period size: 56 Copynumber: 3.8 Consensus size: 56
65618471 GAAGTATATG
* * *
65618481 TGGCATCGATATGTGACTTT-GATATAAGTGTGCGAGTAAGTCCACATTTAATACGT
1 TGGCATCGATATGTGA-TTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* * * * * *
65618537 TGGCATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTTTCATATGT
1 TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* *
65618593 TGGCATCGATATGTGA-CTCTGGTATATGTGTGCGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGATTTC-GATATATGTGTGCGAGTAAGACCACGTTTAATACGT
*
65618649 TGGCATCGATATGTGATTTCGATATATGTGTACGAGTAAGACC
1 TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACC
65618692 TTGTATGAGG
Statistics
Matches: 134, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
55 3 0.02
56 129 0.96
57 2 0.01
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.35
Consensus pattern (56 bp):
TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
Found at i:65618709 original size:56 final size:54
Alignment explanation
Indices: 65618480--65618722 Score: 172
Period size: 56 Copynumber: 4.4 Consensus size: 54
65618470 GGAAGTATAT
* * *** * *
65618480 GTGGCATCGATATGTGACTTT-GATATAAGTGTGCGAGTAAGTCCACATTTAATA
1 GTGGCATCGATATGTGA-TTTCGATATATGTGTGCGAGTAAGACCTTGTATAGTA
* * *
65618534 CGTTGGCATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTT-TCATA-T-
1 -G-TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAG---ACCTTGT-ATAGTA
* * ** * *
65618591 GTTGGCATCGATATGTGA-CTCTGGTATATGTGTGCGAGTAAGACCACGTTTAATA
1 G-TGGCATCGATATGTGATTTC-GATATATGTGTGCGAGTAAGACCTTGTATAGTA
*
65618646 CGTTGGCATCGATATGTGATTTCGATATATGTGTACGAGTAAGACCTTGTATGAGGTA
1 -G-TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCTTGTAT-A-GTA
*
65618704 GTGGCATCGTTATGTGATT
1 GTGGCATCGATATGTGATT
65618723 ACACATAAGA
Statistics
Matches: 150, Mismatches: 24, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
53 4 0.03
54 2 0.01
55 4 0.03
56 129 0.86
57 4 0.03
58 4 0.03
59 3 0.02
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.35
Consensus pattern (54 bp):
GTGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCTTGTATAGTA
Found at i:65618709 original size:112 final size:111
Alignment explanation
Indices: 65618479--65618720 Score: 319
Period size: 112 Copynumber: 2.2 Consensus size: 111
65618469 TGGAAGTATA
* * *
65618479 TGTGGCATCGATATGTGACTTTGATATAAGTGTGCGAGTAAGTCCACATTTAATACGTTGGCATT
1 TGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGCATC
* * *
65618544 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTTTCATATG
66 GATATGTGATTCCGATATATGTGTACGAGTAAG--TACCTTTCATAGG
* * *
65618592 T-TGGCATCGATATGTGACTCTGGTATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATC
1 TGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGCATC
*
65618656 GATATGTGATTTCGATATATGTGTACGAGTAAG-ACCTTGT-ATGAGG
66 GATATGTGATTCCGATATATGTGTACGAGTAAGTACCTT-TCAT-AGG
*
65618702 TAGTGGCATCGTTATGTGA
1 T-GTGGCATCGATATGTGA
65618721 TTACACATAA
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
109 6 0.05
110 4 0.04
112 103 0.90
113 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.35
Consensus pattern (111 bp):
TGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGCATC
GATATGTGATTCCGATATATGTGTACGAGTAAGTACCTTTCATAGG
Found at i:65620412 original size:22 final size:22
Alignment explanation
Indices: 65620387--65620431 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
65620377 ATATGTTCGA
65620387 CATATGTATAAGTTATGCTGAT
1 CATATGTATAAGTTATGCTGAT
65620409 CATATGTATAAGTTATGCTGAT
1 CATATGTATAAGTTATGCTGAT
65620431 C
1 C
65620432 TACTTTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (22 bp):
CATATGTATAAGTTATGCTGAT
Found at i:65626035 original size:22 final size:22
Alignment explanation
Indices: 65626003--65626063 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
65625993 TAGGGTTTAG
*
65626003 AAGA-AGA-AAGAATCGGACAC
1 AAGATAGAGAAGAATCAGACAC
65626023 AAGATAGAGAAGAATCAGACAC
1 AAGATAGAGAAGAATCAGACAC
65626045 AAGATAGAGAAGAATCAGA
1 AAGATAGAGAAGAATCAGA
65626064 GGGTTTGGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 31 0.82
ACGTcount: A:0.56, C:0.11, G:0.25, T:0.08
Consensus pattern (22 bp):
AAGATAGAGAAGAATCAGACAC
Found at i:65627367 original size:19 final size:18
Alignment explanation
Indices: 65627330--65627373 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
65627320 ATACATATAG
65627330 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
65627347 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
65627366 TACTAATT
1 TAATAATT
65627374 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:65627390 original size:11 final size:11
Alignment explanation
Indices: 65627374--65627404 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
65627364 AATACTAATT
65627374 AAAATTTCATA
1 AAAATTTCATA
65627385 AAAATTTCATA
1 AAAATTTCATA
65627396 AAAATTTCA
1 AAAATTTCA
65627405 AATATCCGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (11 bp):
AAAATTTCATA
Found at i:65628389 original size:7 final size:7
Alignment explanation
Indices: 65628377--65628401 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
65628367 TTATATATAT
65628377 ATATTTG
1 ATATTTG
65628384 ATATTTG
1 ATATTTG
65628391 ATATTTG
1 ATATTTG
65628398 ATAT
1 ATAT
65628402 GTGAATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (7 bp):
ATATTTG
Found at i:65629300 original size:10 final size:10
Alignment explanation
Indices: 65629280--65629317 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
65629270 CCTAAAATTG
65629280 ACTATCATCC
1 ACTATCATCC
* *
65629290 ATTATCCTCC
1 ACTATCATCC
65629300 ACTATCATCC
1 ACTATCATCC
65629310 ACTATCAT
1 ACTATCAT
65629318 GTTAATAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.34
Consensus pattern (10 bp):
ACTATCATCC
Found at i:65636647 original size:27 final size:27
Alignment explanation
Indices: 65636623--65636802 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
65636613 TTTGTAGAAC
* * *
65636623 TACCATTTTACCCTCGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
65636650 TA-CGTTTCACCCTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
* * *
65636676 TACCGTTTTACCCTTGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
65636703 TACCATTTTACCCTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
65636730 TACCGTTTTACACTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
65636757 TACCATTTTACCCTC-AGTTTACAAAAT
1 TACCGTTTTACCCTCGA-TTTACAAAAT
65636784 TACCGTTTTACCCTCGATT
1 TACCGTTTTACCCTCGATT
65636803 GTGAAATTAC
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 23 0.17
27 109 0.82
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCGTTTTACCCTCGATTTACAAAAT
Found at i:65636735 original size:54 final size:54
Alignment explanation
Indices: 65636623--65636802 Score: 274
Period size: 54 Copynumber: 3.4 Consensus size: 54
65636613 TTTGTAGAAC
* * *
65636623 TACCATTTTACCCTCGATTTATAGAATTA-CGTTTCACCCTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
*
65636676 TACCGTTTTACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
* * *
65636730 TACCGTTTTACACTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAAT
65636784 TACCGTTTTACCCTCGATT
1 TACCGTTTTACCCTCGATT
65636803 GTGAAATTAC
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
53 28 0.24
54 88 0.76
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
Found at i:65636926 original size:29 final size:27
Alignment explanation
Indices: 65636842--65636948 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 27
65636832 AGAATTACCA
** *
65636842 AAATACCCCT-AGTTTGTAAAATTATCG
1 AAATACCCCTGA-TTTACAAAATTATAG
*
65636869 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCCTGATTTACAAAATTATAG
*
65636896 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCCTGA-TTTAC--AAAATTATAG
** *
65636925 AAATACCATTGGTTTACAAAATTA
1 AAATACCCCTGATTTACAAAATTA
65636949 CTGAAACACC
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
27 40 0.60
28 7 0.10
29 20 0.30
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCCCTGATTTACAAAATTATAG
Found at i:65636954 original size:27 final size:27
Alignment explanation
Indices: 65636859--65636966 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
65636849 CCTAGTTTGT
* * *
65636859 AAAATTATCGAAATACCCCTGATTTAC
1 AAAATTATAGAAATACCCTTGGTTTAC
* *
65636886 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTATAGAAATACCCTTG-GTTTAC
*
65636913 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTATAGAAATACCCTTGGTTTAC
*
65636942 AAAATTACT-GAAACACCCTTGGTTT
1 AAAATTA-TAGAAATACCCTTGGTTT
65636967 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
27 40 0.60
28 7 0.10
29 20 0.30
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTATAGAAATACCCTTGGTTTAC
Found at i:65637976 original size:24 final size:24
Alignment explanation
Indices: 65637894--65637976 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
65637884 AGGAAGTGCT
* *
65637894 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
65637918 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
65637943 AGAAAGGGCTTTGCCCTAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
65637967 AAAAGAGGCT
1 AAAAG-GGCT
65637977 AGGCTTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:65638170 original size:42 final size:42
Alignment explanation
Indices: 65638111--65638202 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
65638101 TAGTCTCCCC
*
65638111 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
65638153 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
65638195 AAATGGGC
1 AAATGGGC
65638203 CTAAGGACCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:65638261 original size:31 final size:31
Alignment explanation
Indices: 65638226--65638340 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
65638216 CGTTTACAGT
* *
65638226 AAAGGCTTCAGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
65638257 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
65638288 AAAGGCTTCGGTCCAGTGATATAATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
65638319 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
65638341 TCAAGACTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 4 0.05
31 71 0.95
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:65659064 original size:42 final size:42
Alignment explanation
Indices: 65658969--65659116 Score: 156
Period size: 43 Copynumber: 3.5 Consensus size: 42
65658959 TAGCTTAGAA
* * * *
65658969 AGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCTC
1 AGACATGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCC
* * *
65659012 AGACAAGGTCTTCCACGAAATCAAATACGTTGCCAATGTCCC
1 AGACATGGTCTTACACGAAATCAAATACGATGCCAATGTCCC
* *
65659054 AGACATGGTCTTACACGTAAATCATAAGT-CGATGCTAACGTCCC
1 AGACATGGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCCC
*
65659098 -GACGTGGTCTTACACGAAA
1 AGACATGGTCTTACACGAAA
65659117 ACACATATCG
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 30 0.34
43 44 0.49
44 14 0.16
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAAATACGATGCCAATGTCCC
Found at i:65661596 original size:40 final size:40
Alignment explanation
Indices: 65661498--65661760 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
65661488 TCCTCGTTCA
* * * * *
65661498 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
65661537 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
65661577 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
65661617 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
65661657 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
65661697 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
65661737 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
65661761 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:65669556 original size:40 final size:40
Alignment explanation
Indices: 65669458--65669720 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
65669448 TCCTCGTTCA
* * * * *
65669458 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
65669497 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
65669537 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
65669577 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
65669617 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
65669657 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
65669697 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
65669721 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:65672720 original size:23 final size:23
Alignment explanation
Indices: 65672693--65672743 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
65672683 CCTCACACGT
* * *
65672693 CCGTGTGGAGGCAATGCGCACAC
1 CCGTGTAGAGACAATGCACACAC
65672716 CCGTGTAGAGACAATGCACACAC
1 CCGTGTAGAGACAATGCACACAC
65672739 CCGTG
1 CCGTG
65672744 CGTATTAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.14
Consensus pattern (23 bp):
CCGTGTAGAGACAATGCACACAC
Found at i:65674278 original size:43 final size:43
Alignment explanation
Indices: 65674207--65674290 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
65674197 TACATGAATT
* *
65674207 GCATCCATTATGAACTCAGACTTCTCAACGAGCTCAGATGCTC
1 GCATCCATAATGAACTCAAACTTCTCAACGAGCTCAGATGCTC
*
65674250 GCATCTATAATGAACTCAAACCTT-TCAACGAGCTCAGATGC
1 GCATCCATAATGAACTCAAA-CTTCTCAACGAGCTCAGATGC
65674291 CACATATCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 34 0.92
44 3 0.08
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (43 bp):
GCATCCATAATGAACTCAAACTTCTCAACGAGCTCAGATGCTC
Found at i:65678321 original size:43 final size:43
Alignment explanation
Indices: 65678164--65678322 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
65678154 TATGTGTTAT
* * *
65678164 CATGTAAGGCCACGTTTAAGACGTTGGCATCGAT-TTGTGAGTTA
1 CATGTAAGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTA
* * * * *
65678208 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTT
1 CATGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
** * ** *
65678250 TGTATAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCACGTCTAGGAC-GTTGGCATCGATATTTGATTA
*
65678293 CATGTAAGACCACGTCTAGGATGTTGGCAT
1 CATGTAAGACCACGTCTAGGACGTTGGCAT
65678323 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
42 29 0.33
43 33 0.37
44 27 0.30
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
Found at i:65685619 original size:37 final size:37
Alignment explanation
Indices: 65685561--65685668 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
65685551 TAGCTCGAAT
* *
65685561 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
65685598 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
65685635 AATCTCCATACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
65685669 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:65685867 original size:48 final size:48
Alignment explanation
Indices: 65685809--65686098 Score: 463
Period size: 48 Copynumber: 6.0 Consensus size: 48
65685799 ATATACACAC
* *
65685809 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
65685857 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
65685905 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
65685953 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
65686001 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
65686049 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
65686097 AT
1 AT
65686099 ATTTATCTTG
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:65701448 original size:51 final size:51
Alignment explanation
Indices: 65701388--65701487 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
65701378 AGATCTGTGG
*
65701388 CATCTGAGCTCGTTGAAAGGTCCGATTTCATAATAGATGTGATT-CATGTAA
1 CATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATAGATGTG-TTACATGTAA
* * * *
65701439 CATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGTGTTACATGT
1 CATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATAGATGTGTTACATGT
65701488 TATGTGGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (51 bp):
CATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATAGATGTGTTACATGTAA
Found at i:65704300 original size:13 final size:14
Alignment explanation
Indices: 65704258--65704302 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
65704248 TAATAATGAT
65704258 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
65704273 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
65704286 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
65704299 TAAA
1 TAAA
65704303 ACAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:65704651 original size:9 final size:9
Alignment explanation
Indices: 65704637--65704663 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
65704627 TAAGTAGGGA
65704637 TTAAATTGT
1 TTAAATTGT
65704646 TTAAATTGT
1 TTAAATTGT
65704655 TTAAATTGT
1 TTAAATTGT
65704664 AAAATTGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TTAAATTGT
Found at i:65706863 original size:17 final size:18
Alignment explanation
Indices: 65706820--65706864 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
65706810 TTGTTTATCA
65706820 TCTTTATTTT-TCACCTT
1 TCTTTATTTTATCACCTT
* *
65706837 T-TTAATTTTATC-CTTT
1 TCTTTATTTTATCACCTT
65706853 TCTTTATTTTAT
1 TCTTTATTTTAT
65706865 TTTCCACGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTTTATTTTATCACCTT
Found at i:65711993 original size:46 final size:46
Alignment explanation
Indices: 65711940--65712076 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
65711930 TATATATACA
* * * *
65711940 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
65711986 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
65712032 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
65712077 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:65712111 original size:47 final size:47
Alignment explanation
Indices: 65712050--65712338 Score: 409
Period size: 47 Copynumber: 6.1 Consensus size: 47
65712040 ACACATTTCG
* *
65712050 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
65712097 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
65712144 CATTGGCCATTCGGCCTTATCACACATA-AGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATA-CATGTTCACATTCATCA
* **
65712191 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
65712238 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
* * **
65712289 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
65712336 CAT
1 CAT
65712339 AAAATCCTAA
Statistics
Matches: 220, Mismatches: 16, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
47 178 0.81
49 2 0.01
51 40 0.18
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:65716507 original size:46 final size:46
Alignment explanation
Indices: 65716451--65716721 Score: 196
Period size: 46 Copynumber: 5.8 Consensus size: 46
65716441 CCATTTGTGC
* * **
65716451 GAGCTAGTGTAAGACATGCCTGGGACAT-GCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGA-GA
* **
65716497 GAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGG-CATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCA-CAAGA-GA
* * * ** *
65716545 GTGCTAGTGTAAGTCATGTCTGGGACAT-GCATTAGCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGA-G-A
* * *
65716592 -AGCCAGTATAAGACATGTCTAGGACAT-GCATCGGCTAC--GAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGAGA
* * * *
65716634 TGTGTCAGTGTAAGATCATGTCTGGGACATGGCATCAGCCTCGAAGATGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCAC-AAGA-GA
* *
65716684 TAGCCAGTGTAAGACTATATCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
65716722 ACTTTACCCA
Statistics
Matches: 173, Mismatches: 38, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.07
45 13 0.08
46 60 0.35
47 29 0.17
48 22 0.13
49 33 0.19
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCACAAGAGA
Found at i:65722601 original size:15 final size:15
Alignment explanation
Indices: 65722581--65722610 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65722571 TTCTTGAAAG
65722581 GTATCAACTAGTGAA
1 GTATCAACTAGTGAA
*
65722596 GTATCAATTAGTGAA
1 GTATCAACTAGTGAA
65722611 TTGGAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (15 bp):
GTATCAACTAGTGAA
Found at i:65722863 original size:20 final size:20
Alignment explanation
Indices: 65722838--65722881 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
65722828 TCTAATAAAT
*
65722838 AAAGTAATT-CGTAAAATATG
1 AAAGT-ATTACGTAAAACATG
*
65722858 AAAGTATTACTTAAAACATG
1 AAAGTATTACGTAAAACATG
65722878 AAAG
1 AAAG
65722882 AGTTTTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.27
Consensus pattern (20 bp):
AAAGTATTACGTAAAACATG
Found at i:65722924 original size:56 final size:55
Alignment explanation
Indices: 65722855--65722998 Score: 155
Period size: 56 Copynumber: 2.6 Consensus size: 55
65722845 TTCGTAAAAT
* *
65722855 ATGAAAGTATTACTTAAAACATGAAAGAGTTTTAAGAAATTAA-TAATCCATAATAC
1 ATGAAAG-ATTACTTAAAACATGAAAGAG-TTAAAGAAAGTAAGTAATCCATAATAC
* * * * *
65722911 ATGAAAGAGTTACTTCAAATATGAAAGTGTTAAAGAAAGTAAGTAATTCGTAATAC
1 ATGAAAGA-TTACTTAAAACATGAAAGAGTTAAAGAAAGTAAGTAATCCATAATAC
* * *
65722967 ATGTAAGAATTACTTAAAACTTGAAAGTGTTA
1 ATGAAAG-ATTACTTAAAACATGAAAGAGTTA
65722999 CTTAAAACAT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
55 12 0.16
56 61 0.82
57 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.31
Consensus pattern (55 bp):
ATGAAAGATTACTTAAAACATGAAAGAGTTAAAGAAAGTAAGTAATCCATAATAC
Found at i:65723410 original size:20 final size:21
Alignment explanation
Indices: 65723374--65723426 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
65723364 AAGTTATTTC
65723374 AAAAATAATAAATAAA-TTCTT
1 AAAAATAA-AAATAAATTTCTT
65723395 AAAACATAAAAA-AAATTTCTT
1 AAAA-ATAAAAATAAATTTCTT
65723416 AAAATATAAAA
1 AAAA-ATAAAA
65723427 GATTTCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.10
21 22 0.76
22 4 0.14
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAATAAAAATAAATTTCTT
Found at i:65723431 original size:19 final size:19
Alignment explanation
Indices: 65723375--65723437 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
65723365 AGTTATTTCA
65723375 AAAATAATAAATAAA-TTCTT
1 AAAATAA-AAA-AAATTTCTT
65723395 AAAACATAAAAAAAATTTCTT
1 -AAA-ATAAAAAAAATTTCTT
* *
65723416 AAAATATAAAAGATTTC-T
1 AAAATAAAAAAAATTTCTT
65723434 AAAA
1 AAAA
65723438 CAAATTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.13
19 12 0.32
20 6 0.16
21 11 0.29
22 4 0.11
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAATAAAAAAAATTTCTT
Found at i:65726771 original size:208 final size:208
Alignment explanation
Indices: 65726427--65726846 Score: 822
Period size: 208 Copynumber: 2.0 Consensus size: 208
65726417 GTGTTTTATT
65726427 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAAATCAAAACAAGTCATGTGCAGGAG
1 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAAATCAAAACAAGTCATGTGCAGGAG
65726492 CTGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAA
66 CTGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAA
65726557 AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
131 AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
65726622 ACTTTGTAATTAA
196 ACTTTGTAATTAA
*
65726635 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAAATCAAAGCAAGTCATGTGCAGGAG
1 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAAATCAAAACAAGTCATGTGCAGGAG
*
65726700 CTGCACGCATTGGTGTGGTGACCATATGCCTCCTTCAGTTTTATCCGTATTTGCAAATGGTGAAA
66 CTGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAA
65726765 AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
131 AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
65726830 ACTTTGTAATTAA
196 ACTTTGTAATTAA
65726843 TTAG
1 TTAG
65726847 AAACTTAAAT
Statistics
Matches: 210, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
208 210 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (208 bp):
TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAAATCAAAACAAGTCATGTGCAGGAG
CTGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAA
AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
ACTTTGTAATTAA
Found at i:65727454 original size:79 final size:79
Alignment explanation
Indices: 65727323--65727480 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
65727313 CTGGAAAGTC
65727323 TGTGCGATACTGAAATGTAGGTTCAAATATATTAGTTAACATGTATAAAAAGTAAATAAATAAAT
1 TGTGCGATACTGAAATGTAGGTTCAAATATATTAGTTAACATGTATAAAAAGTAAATAAATAAAT
65727388 AATGGAGGACAAAG
66 AATGGAGGACAAAG
65727402 TGTGCGATACTGAAATGTAGGTTCAAATATATTAGTTAACATGTATAAAAAGTAAATAAATAAAT
1 TGTGCGATACTGAAATGTAGGTTCAAATATATTAGTTAACATGTATAAAAAGTAAATAAATAAAT
65727467 AATGGAGGACAAAG
66 AATGGAGGACAAAG
65727481 CCACTTCAGA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (79 bp):
TGTGCGATACTGAAATGTAGGTTCAAATATATTAGTTAACATGTATAAAAAGTAAATAAATAAAT
AATGGAGGACAAAG
Found at i:65729145 original size:21 final size:21
Alignment explanation
Indices: 65729121--65729163 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
65729111 AAAGTAACTT
65729121 CACAATCTCAAATGAACAAAC
1 CACAATCTCAAATGAACAAAC
65729142 CACAATCTCAAATGAACAAAC
1 CACAATCTCAAATGAACAAAC
65729163 C
1 C
65729164 TTGACAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.30, G:0.05, T:0.14
Consensus pattern (21 bp):
CACAATCTCAAATGAACAAAC
Found at i:65735799 original size:17 final size:17
Alignment explanation
Indices: 65735777--65735810 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
65735767 ATGTCTCTAT
65735777 CTAAATTGAATTTTTAG
1 CTAAATTGAATTTTTAG
65735794 CTAAATTGAATTTTTAG
1 CTAAATTGAATTTTTAG
65735811 TGAGGAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
CTAAATTGAATTTTTAG
Found at i:65736383 original size:54 final size:54
Alignment explanation
Indices: 65736301--65736410 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
65736291 TAATCAGAGA
*
65736301 AAGCATGATAATGCTATGATCATGATTGTGTAGTATTAGAAATGACAAAATGTT
1 AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGAAATGACAAAATGTT
*
65736355 AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGCAATGACAAAATGTT
1 AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGAAATGACAAAATGTT
65736409 AA
1 AA
65736411 ACTAAAATGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (54 bp):
AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGAAATGACAAAATGTT
Found at i:65738316 original size:94 final size:94
Alignment explanation
Indices: 65738167--65738758 Score: 767
Period size: 94 Copynumber: 6.3 Consensus size: 94
65738157 TCAATCCATT
* * * *
65738167 CCACTACAATTTTAAGGATATAGG-TTTGTAGCCTCATCTTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
* * * * *
65738231 AAAATTCGCTATGGTAGCTTTAATCCGCC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * * * *
65738260 CCACTGCAACTTCAAGGGTATAGGATTTGTAGTTTCATCTTGCTCCACTACAACTTCAGGGAGAT
1 CCACTACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
* *
65738325 AAGATTCACTATCGTAACTTCAATCCGAC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * * *
65738354 CCACTACAAATTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCATTGCAACTTTAGGGAGAT
1 CCACTACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
*
65738419 AAGATTCACTATTGTAGCTTTAATCCGAC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * * * *
65738448 CCACTAGAAC-TTCAGTGGTATAGGATTTGTAGCTTCATTTTGCTCCATTGCAACTTTAAGGAGA
1 CCACTACAACTTTAAG-GGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGA
* * *
65738512 TAACATTCACTATCGTAGCTTCAATCTGAC
65 TAAGATTCACTATTGTAGCTTCAATCCGAC
* *
65738542 CCACTACAACTTTAGGGGTATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
1 CCACTACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
* *
65738607 AAGATTCATTATTGTAGCTTCAATCTGAC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * *
65738636 CCACTACAACTTT-AGTGGTATAGGATTTGTAGCTTTATCTTGTTCCCCTGCAACTTTAGGGAGA
1 CCACTACAACTTTAAG-GGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGA
* * *
65738700 TAAGATTCGCTATTGTAGCTTTAATTCGAC
65 TAAGATTCACTATTGTAGCTTCAATCCGAC
* * *
65738730 CAACTGCAACTTTAGGGGTATAGGATTTG
1 CCACTACAACTTTAAGGGTATAGGATTTG
65738759 GGGTTTCACT
Statistics
Matches: 435, Mismatches: 59, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
93 24 0.06
94 407 0.94
95 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (94 bp):
CCACTACAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
AAGATTCACTATTGTAGCTTCAATCCGAC
Found at i:65738414 original size:44 final size:44
Alignment explanation
Indices: 65738260--65738696 Score: 181
Period size: 44 Copynumber: 9.4 Consensus size: 44
65738250 TTAATCCGCC
* * * *
65738260 CCACTGCAACTTCAAGGGTATAGGATTTGTAGTTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * * * **
65738304 CCACTACAACTTCAGGGAG-ATAAGATTCACTATCGTAACTTCAATCCGAC-
1 CCACTGCAACTTTAGGG-GTATAGGA-T---T-T-GTAGCTTC-ATCTTACT
* *
65738354 CCACTACAAATTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * * **
65738398 CCATTGCAACTTTAGGGAG-ATAAGATTCACTATTGTAGCTTTAATCCGAC-
1 CCACTGCAACTTTAGGG-GTAT-AG---GA-T-TTGTAGC-TTCATCTTACT
* * * *
65738448 CCACTAG-AACTTCAGTGGTATAGGATTTGTAGCTTCATTTTGCT
1 CCACT-GCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * ** *
65738492 CCATTGCAACTTTAAGGAG-ATAACATTCACTATCGTAGCTTCAATCTGAC-
1 CCACTGCAACTTT-AGGGGTATAGGA-T---T-T-GTAGCTTC-ATCTTACT
* * *
65738542 CCACTACAACTTTAGGGGTATAGGATTTATAGCTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* *
65738586 CCACTGCAACTTTAGGGAG-ATAAGATTCATTATTGTAGCTTCAATCTGAC-
1 CCACTGCAACTTTAGGG-GTAT-AG---GA-T-TTGTAGCTTC-ATCTTACT
* * * **
65738636 CCACTACAACTTTAGTGGTATAGGATTTGTAGCTTTATCTTGTT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
*
65738680 CCCCTGCAACTTTAGGG
1 CCACTGCAACTTTAGGG
65738697 AGATAAGATT
Statistics
Matches: 289, Mismatches: 62, Indels: 84
0.66 0.14 0.19
Matches are distributed among these distances:
43 20 0.07
44 111 0.38
45 16 0.06
46 4 0.01
48 4 0.01
49 17 0.06
50 96 0.33
51 21 0.07
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
Found at i:65738650 original size:50 final size:50
Alignment explanation
Indices: 65738304--65738746 Score: 236
Period size: 50 Copynumber: 9.3 Consensus size: 50
65738294 TCATCTTGCT
* * * *
65738304 CCACTACAACTTCAGGGAGATAAGATTCACTATCGTAACTTCAATCCGAC
1 CCACTACAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGAC
* * *
65738354 CCACTACAAATTTAGGG-G-TATAG---GA-T-TTGTAGCTTC-ATCTTAC
1 CCACTACAACTTTAGGGAGATA-AGATTCACTATTGTAGCTTCAATCTGAC
* * * *
65738397 TCCATTGCAACTTTAGGGAGATAAGATTCACTATTGTAGCTTTAATCCGAC
1 -CCACTACAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGAC
* * * * * *
65738448 CCACTAGAACTTCAGTG-G-TATAG---GA-T-TTGTAGCTTCATTTTG-C
1 CCACTACAACTTTAGGGAGATA-AGATTCACTATTGTAGCTTCAATCTGAC
* * * * *
65738491 TCCATTGCAACTTTAAGGAGATAACATTCACTATCGTAGCTTCAATCTGAC
1 -CCACTACAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGAC
*
65738542 CCACTACAACTTTAGGG-GTATAGGATT---TA---TAGCTTC-ATCTTG-C
1 CCACTACAACTTTAGGGAG-ATAAGATTCACTATTGTAGCTTCAATC-TGAC
* *
65738585 TCCACTGCAACTTTAGGGAGATAAGATTCATTATTGTAGCTTCAATCTGAC
1 -CCACTACAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGAC
* * * *
65738636 CCACTACAACTTTAGTG-G-TATAG---GA-T-TTGTAGCTT-TATCTTGTTC
1 CCACTACAACTTTAGGGAGATA-AGATTCACTATTGTAGCTTCAATC-TG-AC
* * *
65738681 CC-CTGCAACTTTAGGGAGATAAGATTCGCTATTGTAGCTTTAAT-TCGAC
1 CCACTACAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCT-GAC
* *
65738730 CAACTGCAACTTTAGGG
1 CCACTACAACTTTAGGG
65738747 GTATAGGATT
Statistics
Matches: 294, Mismatches: 54, Indels: 90
0.67 0.12 0.21
Matches are distributed among these distances:
43 13 0.04
44 100 0.34
45 15 0.05
46 9 0.03
47 4 0.01
48 8 0.03
49 16 0.05
50 117 0.40
51 12 0.04
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (50 bp):
CCACTACAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCTGAC
Found at i:65740934 original size:68 final size:68
Alignment explanation
Indices: 65740784--65740941 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
65740774 CTAGCCAATT
* * *
65740784 TGTCTCGTAGCTCTCTTGTCTACATGGTGTTCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TGTCTCGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACA
**
65740849 TTTA
65 CATA
* * *
65740853 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTA
1 TGTCT--CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTA
65740915 CTACATA
63 C-ACATA
*
65740922 GTGTCTCGTAGCTTTCTTGT
1 -TGTCTCGTAGCTCTCTTGT
65740942 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 36 0.49
69 8 0.11
70 5 0.07
71 25 0.34
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (68 bp):
TGTCTCGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:65744726 original size:40 final size:40
Alignment explanation
Indices: 65744659--65744823 Score: 228
Period size: 40 Copynumber: 4.2 Consensus size: 40
65744649 ACCCAAGTAT
*
65744659 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
*
65744698 CTTCGGGTA-TTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGG-ACTTAGCCCGGATATAACAACTCGCACAAATGC
* * *
65744738 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAA-CAACTCGCACAAATGC
* *
65744778 CTTCGGGACATAGCCCGGATATAACAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
65744818 CTTCGG
1 CTTCGG
65744824 ATCTTAGTTC
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.11
40 98 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACAAATGC
Found at i:65763214 original size:39 final size:38
Alignment explanation
Indices: 65763128--65763401 Score: 314
Period size: 39 Copynumber: 7.0 Consensus size: 38
65763118 AAATCCAATC
* * * **
65763128 ACCACCACAAAGCATGCGGGACTTTAAGCCTAGATATAAT
1 ACCAGCACAAAGCCTTCGGGAC-TT-AGCCCGGATATAAT
*
65763168 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
1 ACCAGCACAAAGCCTTCGGGAC-TTAGCCCGGATATAAT
* *
65763207 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
*
65763246 ACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAAT
1 ACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
* * **
65763285 ACTAGTACGAATTCCTTCGGGACTTAGCCCGGATATAAT
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
** *
65763324 ACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAAC
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
* *
65763363 ACCAGCACAAATGCCTTCGGGACTTAACCCAGATATAAT
1 ACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
65763402 TCTCCATTAT
Statistics
Matches: 207, Mismatches: 23, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
38 4 0.02
39 166 0.80
40 37 0.18
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTTCGGGACTTAGCCCGGATATAAT
Found at i:65763275 original size:78 final size:78
Alignment explanation
Indices: 65763160--65763401 Score: 360
Period size: 78 Copynumber: 3.1 Consensus size: 78
65763150 TTTAAGCCTA
*
65763160 GATATAATACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAATACCAGCACGAATGCCTT
1 GATATAATACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAATACCAGCACGAATGCCTT
65763224 CGGGACTTAGCCCG
65 CGGGACTTAGCCCG
* * * * *
65763238 GATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAATACTAGTACGAATTCCTTC
1 GATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
65763303 GGGACTTAGCCCG
66 GGGACTTAGCCCG
* * * *
65763316 GATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTC
1 GATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
* *
65763381 GGGACTTAACCCA
66 GGGACTTAGCCCG
65763394 GATATAAT
1 GATATAAT
65763402 TCTCCATTAT
Statistics
Matches: 146, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
78 137 0.94
79 9 0.06
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
GATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
GGGACTTAGCCCG
Found at i:65763334 original size:117 final size:118
Alignment explanation
Indices: 65763127--65763401 Score: 394
Period size: 117 Copynumber: 2.3 Consensus size: 118
65763117 CAAATCCAAT
* * * * * * ** *
65763127 CACCACCACAAA-GCATGCGGGACTTTAAGCCTAGATATAATACCAGCAC-AAAGCCTGCGGGAC
1 CACCAGCACAAATGCCTTCGGGAC-TTAA-CCCAGATATAATACTAGTACGAATTCCTTCGGGAC
65763190 TTTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
64 TTTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
* * *
65763245 CACCAGCACAAATGCCTTCGGGGCTTAGCCCGGATATAATACTAGTACGAATTCCTTCGGGAC-T
1 CACCAGCACAAATGCCTTCGGGACTTAACCCAGATATAATACTAGTACGAATTCCTTCGGGACTT
*
65763309 TAGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAA
66 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
65763362 CACCAGCACAAATGCCTTCGGGACTTAACCCAGATATAAT
1 CACCAGCACAAATGCCTTCGGGACTTAACCCAGATATAAT
65763402 TCTCCATTAT
Statistics
Matches: 139, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
117 106 0.76
118 25 0.18
119 8 0.06
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (118 bp):
CACCAGCACAAATGCCTTCGGGACTTAACCCAGATATAATACTAGTACGAATTCCTTCGGGACTT
TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
Found at i:65768870 original size:96 final size:96
Alignment explanation
Indices: 65768760--65769395 Score: 1081
Period size: 96 Copynumber: 6.7 Consensus size: 96
65768750 CAGCCAAGAC
65768760 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
65768825 AAGGCCTAATGGCCGATGTGATGAAGGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
65768856 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65768921 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65768952 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65769017 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
65769048 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65769113 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
65769144 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
65769207 AAGGCCTAATGGCCGATGCGATGAA-GTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
*
65769237 AGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65769299 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
65769330 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA-A-ATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65769393 AAG
66 AAG
65769396 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 20, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
90 6 0.01
92 52 0.10
93 56 0.11
94 59 0.11
95 1 0.00
96 340 0.66
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:65768887 original size:47 final size:47
Alignment explanation
Indices: 65768760--65769395 Score: 1033
Period size: 47 Copynumber: 13.4 Consensus size: 47
65768750 CAGCCAAGAC
65768760 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
65768807 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAGGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
65768856 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65768903 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65768952 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65768999 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
65769048 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65769095 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65769144 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
65769191 AGTGTATATATATGATAAGGCCTAATGGCCGATGCGATGAA-GTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
65769237 AGTGTATATGTGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
65769283 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
65769330 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
65769377 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
65769396 TCCCGAAGGG
Statistics
Matches: 552, Mismatches: 27, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
45 13 0.02
46 59 0.11
47 297 0.54
49 183 0.33
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:65769569 original size:37 final size:37
Alignment explanation
Indices: 65769513--65769591 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
65769503 CCGAGCTCTA
* *
65769513 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
65769550 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65769587 AAGAC
1 AAGAC
65769592 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65772510 original size:28 final size:28
Alignment explanation
Indices: 65772447--65772627 Score: 283
Period size: 28 Copynumber: 6.5 Consensus size: 28
65772437 ATATTAAGTC
*
65772447 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
65772474 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65772502 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65772530 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
65772558 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
65772586 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65772615 CGCACACTTAGTG
1 CGCACACTTAGTG
65772628 TCAATCTCAT
Statistics
Matches: 143, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 22 0.15
28 103 0.72
29 18 0.13
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65776755 original size:19 final size:18
Alignment explanation
Indices: 65776727--65776763 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
65776717 ATATATTGTA
65776727 TTTTTTTCTTTGTTTTTG
1 TTTTTTTCTTTGTTTTTG
65776745 TTTTTTATCTTTGTTTTTG
1 TTTTTT-TCTTTGTTTTTG
65776764 CTTGTTCGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.03, C:0.05, G:0.11, T:0.81
Consensus pattern (18 bp):
TTTTTTTCTTTGTTTTTG
Found at i:65780877 original size:20 final size:22
Alignment explanation
Indices: 65780841--65780880 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
65780831 TATATTAGTG
65780841 TTATATGTATATATTGATACGA
1 TTATATGTATATATTGATACGA
65780863 TTATAT-TAT-TATTGATAC
1 TTATATGTATATATTGATAC
65780881 AAATTTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 3 0.17
22 6 0.33
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (22 bp):
TTATATGTATATATTGATACGA
Found at i:65784100 original size:48 final size:48
Alignment explanation
Indices: 65784045--65784171 Score: 200
Period size: 48 Copynumber: 2.6 Consensus size: 48
65784035 AGGTGCCAAA
*
65784045 ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCATCCGAAGTGCTAAT
1 ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCATCCGAAGCGCTAAT
** * *
65784093 ATCATGGCTTGAAGCCAAATCAATAAAGCTAGCATCCGAAGCGCTAAT
1 ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCATCCGAAGCGCTAAT
*
65784141 ATCATGGCCCGAAGCCAAATTAATGAAGCTC
1 ATCATGGCCCGAAGCCAAATCAATGAAGCTC
65784172 TTAATGACAT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (48 bp):
ATCATGGCCCGAAGCCAAATCAATGAAGCTCGCATCCGAAGCGCTAAT
Found at i:65790864 original size:28 final size:28
Alignment explanation
Indices: 65790801--65790954 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
65790791 ATATTAAGTC
*
65790801 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65790828 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65790856 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
65790884 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
65790912 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
65790941 CGTACACTTAGTGC
1 CGCACACTTAGTGC
65790955 CAATCTCATG
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
27 21 0.18
28 76 0.66
29 18 0.16
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65798966 original size:28 final size:28
Alignment explanation
Indices: 65798903--65799056 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
65798893 ATATTAAGTC
*
65798903 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65798930 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
65798958 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
65798986 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
65799014 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
65799043 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65799057 CAATCTCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.18
28 76 0.66
29 19 0.16
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65802885 original size:85 final size:84
Alignment explanation
Indices: 65802758--65802917 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 84
65802748 CATACCAATT
* * * * * *
65802758 CCATATCCCAGATATGGTCTTACATGGGATCTCGTATCGATGCTAATAGCCTAGCTATGGTCTTA
1 CCATATCCCAGATATGGTCTTACACGAGATCTCATATAGATGC-AATAGCCCAGATATGGTCTTA
65802823 CACGA-AGTCTTTTATTGATG
65 CAC-ATAGTCTTTTATTGATG
* *
65802843 CCATATCCCAGATATGGTCTTACACGA-AGTCTCATATAGATGCCATATCCCAGATATGGTCTTA
1 CCATATCCCAGATATGGTCTTACACGAGA-TCTCATATAGATGCAATAGCCCAGATATGGTCTTA
65802907 CACATAGTCTT
65 CACATAGTCTT
65802918 AGTAACCCTA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
83 1 0.02
84 27 0.42
85 37 0.57
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (84 bp):
CCATATCCCAGATATGGTCTTACACGAGATCTCATATAGATGCAATAGCCCAGATATGGTCTTAC
ACATAGTCTTTTATTGATG
Found at i:65802916 original size:42 final size:42
Alignment explanation
Indices: 65802758--65802909 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
65802748 CATACCAATT
* * * *
65802758 CCATATCCCAGATATGGTCTTACATG-GGATCTCGTATCGATG
1 CCATATCCCAGATATGGTCTTACACGAAG-TCTCATATAGATG
* * * * ** *
65802800 CTAATAGCCTAGCTATGGTCTTACACGAAGTCTTTTATTGATG
1 C-CATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATG
65802843 CCATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATG
1 CCATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATG
65802885 CCATATCCCAGATATGGTCTTACAC
1 CCATATCCCAGATATGGTCTTACAC
65802910 ATAGTCTTAG
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 60 0.65
43 31 0.34
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGAAGTCTCATATAGATG
Found at i:65810919 original size:47 final size:47
Alignment explanation
Indices: 65810868--65810961 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
65810858 TTATATTTGA
*
65810868 TTGAAAACTATTGTTATACGTAAATTCAATCAACGTCAAATATTTTT
1 TTGAAAACTATTGTTATACGTAAATTCAATCAACGACAAATATTTTT
*
65810915 TTGAAAACTATTGTTATACGTAAATTCAATCAATGACAAATATTTTT
1 TTGAAAACTATTGTTATACGTAAATTCAATCAACGACAAATATTTTT
65810962 CCCATGTACC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (47 bp):
TTGAAAACTATTGTTATACGTAAATTCAATCAACGACAAATATTTTT
Found at i:65813663 original size:27 final size:26
Alignment explanation
Indices: 65813611--65813727 Score: 110
Period size: 27 Copynumber: 4.4 Consensus size: 26
65813601 CCCTTGTAAA
* * *
65813611 GTAAAATGA-TCTAATGCCCGTCTAGG
1 GTAAAATGACTGTAATACCC-TATAGG
*
65813637 GTAAAATGACCGTAATACCTCTATAGG
1 GTAAAATGACTGTAATACC-CTATAGG
* * *
65813664 GTAAAATGACTGTAATGCCCTTGTAAG
1 GTAAAATGACTGTAATACCC-TATAGG
* *
65813691 GTAAAATGACTGTAATACCCCTTTATG
1 GTAAAATGACTGTAATA-CCCTATAGG
65813718 GTAAAATGAC
1 GTAAAATGAC
65813728 GATTATGGCC
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
26 10 0.13
27 62 0.82
28 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (26 bp):
GTAAAATGACTGTAATACCCTATAGG
Found at i:65813700 original size:54 final size:54
Alignment explanation
Indices: 65813587--65813727 Score: 158
Period size: 54 Copynumber: 2.6 Consensus size: 54
65813577 AGAGGTCGTT
* * * ** *
65813587 AAATGCCCGTAATACCCTTGTAAAGTAAAATGA-TCTAATGCCCGTCTAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTAAAATGACTCTAATGCCCGTCTAAGGTA
* * * *
65813640 AAATGACCGTAATACCTCTATAGGGTAAAATGACTGTAATGCCCTTGTAAGGTA
1 AAATGACCGTAATACCCCTATAGGGTAAAATGACTCTAATGCCCGTCTAAGGTA
* * *
65813694 AAATGACTGTAATACCCCTTTATGGTAAAATGAC
1 AAATGACCGTAATACCCCTATAGGGTAAAATGAC
65813728 GATTATGGCC
Statistics
Matches: 73, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
53 27 0.37
54 46 0.63
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.28
Consensus pattern (54 bp):
AAATGACCGTAATACCCCTATAGGGTAAAATGACTCTAATGCCCGTCTAAGGTA
Found at i:65814120 original size:28 final size:28
Alignment explanation
Indices: 65814075--65814134 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
65814065 GCATTACACT
* *
65814075 ACTGATACTACATTGGGCTTAGGCCCAC
1 ACTGATACTACATAGGGCTAAGGCCCAC
* * *
65814103 ACTGCTACTATATAGGGCTAAGGCCCAG
1 ACTGATACTACATAGGGCTAAGGCCCAC
65814131 ACTG
1 ACTG
65814135 TATGTACTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (28 bp):
ACTGATACTACATAGGGCTAAGGCCCAC
Found at i:65821721 original size:23 final size:22
Alignment explanation
Indices: 65821695--65821746 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
65821685 TAATATTTAT
*
65821695 AACATCACAATTTACCTATTCAA
1 AACATCACAATTT-CATATTCAA
*
65821718 AACAT-ACCAATTTCATATTCAC
1 AACATCA-CAATTTCATATTCAA
65821740 AA-ATCAC
1 AACATCAC
65821747 CTAATTGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 3 0.12
22 11 0.44
23 11 0.44
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (22 bp):
AACATCACAATTTCATATTCAA
Found at i:65828909 original size:5 final size:5
Alignment explanation
Indices: 65828899--65828926 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
65828889 GATGCCAACC
65828899 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
65828927 TTATTTTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:65834545 original size:27 final size:26
Alignment explanation
Indices: 65834501--65834552 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
65834491 CTCACTGCAA
*
65834501 TCTGGTGGCGTCGCCACATATATCTGT
1 TCTGGTGACGTCGCCACA-ATATCTGT
* *
65834528 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACGTCGCCACAATATCTG
65834553 GCAGTCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTGGTGACGTCGCCACAATATCTGT
Found at i:65834623 original size:71 final size:67
Alignment explanation
Indices: 65834482--65834623 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
65834472 GAGGAAGCAT
* * *
65834482 TCTGGCAGCCTCACTGCAATCTGGTGGCGTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCACTGCAATCTGGTGGCGTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
65834547 TA
66 TA
* * * * * *
65834549 TCTGGCAGTCTCGCTGCAGTCTGGTGGCTTCGCCACATATATATATCTGTTTTGGTGGCCTAGCC
1 TCTGGCAGCCTCACTGCAATCTGGTGGCGTCGCCAC----ATATATCTGTTCTGGTGACCTAGCC
65834614 ACAATA
62 ACAATA
65834620 TCTG
1 TCTG
65834624 TATTTGGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 32 0.52
71 30 0.48
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCACTGCAATCTGGTGGCGTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:65852027 original size:191 final size:191
Alignment explanation
Indices: 65851688--65852080 Score: 606
Period size: 191 Copynumber: 2.1 Consensus size: 191
65851678 CTGGTTACTA
* * ** * * *
65851688 TAGACAGTTTGTGAAAGGTTTCTCTATGATTGCAATGCCGATGACGAAGCTATTATAGAAAGATG
1 TAGACGGTTTGTGAAAGGTTTCTCTATGATTGAAACCCCAATGACAAAGCTATTACAGAAAGATG
65851753 TTAAGTTCGAATGGTTAGAAAAGTGCCAGAAAAATTTTGATCAGTTGAAAGCCCTTTTCACCGAA
66 TTAAGTTCGAATGGTTAGAAAAGTGCCAGAAAAATTTTGATCAGTTGAAAGCCCTTTTCACCGAA
* * * *
65851818 GCTCTAATGCTAGTTCAGCTAGAATCGGGGAAAGAATTTTTTATCTATAGTGATGCATCTT
131 GCTCCAATGCTAGTTCAGCCAGAATCGGGGAAAGAATTTGTTATCTATAGTGATACATCTT
65851879 TAGACGGTTTGTGAAAGGTTTCTCTATGATTGAAACCCCAATGACAAAGCTATTACAGAAAGATG
1 TAGACGGTTTGTGAAAGGTTTCTCTATGATTGAAACCCCAATGACAAAGCTATTACAGAAAGATG
* *
65851944 TTAAGTTCGAATGGTTAGAAAAGTGCCAGAAAAGTTTTGATCAGTTGAAAGCCCTTTTGACCGAA
66 TTAAGTTCGAATGGTTAGAAAAGTGCCAGAAAAATTTTGATCAGTTGAAAGCCCTTTTCACCGAA
* * * * *
65852009 GCTCCAGTGCTTGTTCAGCCAGAATTGGGTAAAGAATTTGTTATTTATAGTGATACATCTT
131 GCTCCAATGCTAGTTCAGCCAGAATCGGGGAAAGAATTTGTTATCTATAGTGATACATCTT
* *
65852070 TAAATGGTTTG
1 TAGACGGTTTG
65852081 GGTTGCATTT
Statistics
Matches: 182, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
191 182 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (191 bp):
TAGACGGTTTGTGAAAGGTTTCTCTATGATTGAAACCCCAATGACAAAGCTATTACAGAAAGATG
TTAAGTTCGAATGGTTAGAAAAGTGCCAGAAAAATTTTGATCAGTTGAAAGCCCTTTTCACCGAA
GCTCCAATGCTAGTTCAGCCAGAATCGGGGAAAGAATTTGTTATCTATAGTGATACATCTT
Found at i:65854699 original size:47 final size:47
Alignment explanation
Indices: 65854641--65855367 Score: 1238
Period size: 47 Copynumber: 15.5 Consensus size: 47
65854631 ATTCAGCCAA
*
65854641 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
65854688 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
65854735 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
65854782 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
65854829 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
65854876 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
65854923 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
65854970 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
65855017 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
65855064 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
65855111 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * *
65855158 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
65855205 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
65855252 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * * *
65855299 GAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* **
65855346 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATGTGTGATAAG
65855368 TCCCAAAGGG
Statistics
Matches: 658, Mismatches: 22, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 658 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:65855542 original size:37 final size:37
Alignment explanation
Indices: 65855486--65855564 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
65855476 CCGAACTCTA
* *
65855486 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
65855523 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65855560 AAGAC
1 AAGAC
65855565 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65859929 original size:43 final size:43
Alignment explanation
Indices: 65859881--65860035 Score: 183
Period size: 43 Copynumber: 3.7 Consensus size: 43
65859871 TGTGTTCTCG
*
65859881 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACA
* * * * **
65859924 TGTAAGAGCATGTCTAGGACATTGGCATCG-TATTTGATT-TG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACA
*
65859965 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGA-TAGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTA-CA
*
65860008 TGTAAGACCATGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
65860036 TGTACAATAT
Statistics
Matches: 91, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
41 26 0.29
42 14 0.15
43 51 0.56
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACA
Found at i:65859980 original size:84 final size:84
Alignment explanation
Indices: 65859880--65860035 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 84
65859870 ATGTGTTCTC
*
65859880 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGATATGTGATTA-CATGTAAGAGCATGTCTAGGA
1 GTGTAAGACCACGTCTGGGACAG-TGGCATCGATATGTGA-TAGCATGTAAGACCATGTCTAGGA
65859943 CATTGGCATCGTATTTGATTT
64 CATTGGCATCGTATTTGATTT
*
65859964 GTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATAGCATGTAAGACCATGTCTGGGAC
1 GTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATGTGATAGCATGTAAGACCATGTCTAGGAC
65860028 ATTGGCAT
65 ATTGGCAT
65860036 TGTACAATAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
83 3 0.04
84 63 0.94
85 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATAGCATGTAAGACCATGTCTAGGACA
TTGGCATCGTATTTGATTT
Found at i:65862100 original size:28 final size:28
Alignment explanation
Indices: 65862060--65862116 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
65862050 TATCCATCAA
65862060 TCCAACATCATATTCACATAAAATTAGT
1 TCCAACATCATATTCACATAAAATTAGT
65862088 TCCAACATCATATTCACATAAAATTAGT
1 TCCAACATCATATTCACATAAAATTAGT
65862116 T
1 T
65862117 ATCAATCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (28 bp):
TCCAACATCATATTCACATAAAATTAGT
Found at i:65864840 original size:15 final size:15
Alignment explanation
Indices: 65864804--65864833 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
65864794 TACTCGTAAA
65864804 TACATAAACTCATAG
1 TACATAAACTCATAG
65864819 TACATAAACTCATAG
1 TACATAAACTCATAG
65864834 ATCATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (15 bp):
TACATAAACTCATAG
Found at i:65875492 original size:47 final size:48
Alignment explanation
Indices: 65875370--65875578 Score: 221
Period size: 47 Copynumber: 4.6 Consensus size: 48
65875360 TGGTTATACG
* * *
65875370 TGTAA-GTGGTGCTAAGTGGATATACCATGATTACACATATTGATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGATTCA
** *
65875417 TGTAAATTGGTGCTAAGTGGATATACCACGATTACATTTATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGATTCA
* *
65875465 T-TAATGTGGTGCTAAGTGGATATACCACG-GT---TA-A---A--CA
1 TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGATTCA
* *
65875502 TGTAACGTGGTTCTAAGTGGATATGCCAC-AGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGA-TTACATATATTGATTCA
65875550 T-TAACGTGGTGCTAAGTGGATATACCACG
1 TGTAACGTGGTGCTAAGTGGATATACCACG
65875579 GTTAAACATG
Statistics
Matches: 133, Mismatches: 15, Indels: 27
0.76 0.09 0.15
Matches are distributed among these distances:
37 3 0.02
38 24 0.18
39 2 0.02
42 3 0.02
43 2 0.02
46 2 0.02
47 56 0.42
48 41 0.31
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCACGATTACATATATTGATTCA
Found at i:65875521 original size:38 final size:38
Alignment explanation
Indices: 65875470--65875627 Score: 181
Period size: 38 Copynumber: 3.9 Consensus size: 38
65875460 ATTCATTAAT
65875470 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* * * *
65875508 GTGGTTCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG------TAAC
65875555 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
* *
65875593 GTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
65875628 TAATTTGAAA
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
38 62 0.61
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 29 0.29
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAC
Found at i:65875559 original size:85 final size:84
Alignment explanation
Indices: 65875414--65875616 Score: 334
Period size: 85 Copynumber: 2.4 Consensus size: 84
65875404 ACATATTGAT
** * * *
65875414 ACATGTAAATTGGTGCTAAGTGGATATACCACGATTACATTTATTGATTCATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACG-TTACATATATTGATTCATTAACGTGGTGCTA
65875479 AGTGGATATACCACGGTTAA
65 AGTGGATATACCACGGTTAA
*
65875499 ACATGTAACGTGGTTCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCAC-GTTACATATATTGATTCATTAACGTGGTGCTA
65875564 AGTGGATATACCACGGTTAA
65 AGTGGATATACCACGGTTAA
65875584 ACATGTAACGTGGTGCTAAGTGGATATGCCACG
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACG
65875617 GTTATACATG
Statistics
Matches: 110, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
84 1 0.01
85 108 0.98
86 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (84 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGTTACATATATTGATTCATTAACGTGGTGCTAA
GTGGATATACCACGGTTAA
Found at i:65875575 original size:132 final size:132
Alignment explanation
Indices: 65875338--65875578 Score: 351
Period size: 132 Copynumber: 1.8 Consensus size: 132
65875328 AAAAAAAAAC
* * * *
65875338 GTGGTGCTAAGCGGATATACCATGGTTATACGTGTAAGTGGTGCTAAGTGGATATACCATGATTA
1 GTGGTGCTAAGCGGATATACCACGGTTAAACATGTAAGTGGTGCTAAGTGGATATACCAAGATTA
*
65875403 CACATATTGATACATGTAAATTGGTGCTAAGTGGATATACCACGATTACATTTATTGATTCATTA
66 CACATATTGATACATGTAAAGTGGTGCTAAGTGGATATACCACGATTACATTTATTGATTCATTA
65875468 AT
131 AT
* * *
65875470 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTTCTAAGTGGATATGCCACAG-T
1 GTGGTGCTAAGCGGATATACCACGGTTAAACATGTAA-GTGGTGCTAAGTGGATATACCA-AGAT
* * *
65875534 TACATATATTGATTCAT-TAACGTGGTGCTAAGTGGATATACCACG
64 TACACATATTGATACATGTAAAGTGGTGCTAAGTGGATATACCACG
65875579 GTTAAACATG
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
132 59 0.61
133 36 0.38
134 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (132 bp):
GTGGTGCTAAGCGGATATACCACGGTTAAACATGTAAGTGGTGCTAAGTGGATATACCAAGATTA
CACATATTGATACATGTAAAGTGGTGCTAAGTGGATATACCACGATTACATTTATTGATTCATTA
AT
Found at i:65882132 original size:33 final size:33
Alignment explanation
Indices: 65882090--65882153 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
65882080 GCATGTAGTA
*
65882090 ACAGTTTGGGCCTGAGCCCTATTCAATAACAGT
1 ACAGTTTGGGCCTGAGCCCTATACAATAACAGT
* *
65882123 ACAGTTTGGGCCTTAGCCCTATACAGTAACA
1 ACAGTTTGGGCCTGAGCCCTATACAATAACA
65882154 ATGTGGGCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (33 bp):
ACAGTTTGGGCCTGAGCCCTATACAATAACAGT
Found at i:65882389 original size:27 final size:26
Alignment explanation
Indices: 65882340--65882398 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
65882330 GATGCCAGAA
*
65882340 ACAGTAAATGTGGCAAAGCCACCAGT
1 ACAGTAAATGTGACAAAGCCACCAGT
* * *
65882366 ATCAGTAATTGTGACATAGTCACCAGT
1 A-CAGTAAATGTGACAAAGCCACCAGT
65882393 ACAGTA
1 ACAGTA
65882399 CTTCCTCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
ACAGTAAATGTGACAAAGCCACCAGT
Found at i:65882582 original size:54 final size:54
Alignment explanation
Indices: 65882535--65882667 Score: 194
Period size: 54 Copynumber: 2.5 Consensus size: 54
65882525 GGCATAATCA
* *
65882535 TCATTTTACCATACAAGGGTATTACGATCATTTTACCATACAGGGGCATTACGG
1 TCATTTTACCCTACAAGGGTATTACGATCATTTTACCATACAGGGGCATAACGG
* * * *
65882589 TCATTTTACCCTACAAGGGTATTACTATCATTTTACCCTACAGGAGTATAACGG
1 TCATTTTACCCTACAAGGGTATTACGATCATTTTACCATACAGGGGCATAACGG
* *
65882643 TCATTTTACCCTATAGGGGTATTAC
1 TCATTTTACCCTACAAGGGTATTAC
65882668 AGTTATTTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (54 bp):
TCATTTTACCCTACAAGGGTATTACGATCATTTTACCATACAGGGGCATAACGG
Found at i:65882653 original size:27 final size:26
Alignment explanation
Indices: 65882535--65882679 Score: 155
Period size: 27 Copynumber: 5.4 Consensus size: 26
65882525 GGCATAATCA
* *
65882535 TCATTTTACCATACAAGGGTATTACGA
1 TCATTTTACCCTAC-AGGGTATTACGG
* *
65882562 TCATTTTACCATACAGGGGCATTACGG
1 TCATTTTACCCTACA-GGGTATTACGG
**
65882589 TCATTTTACCCTACAAGGGTATTACTA
1 TCATTTTACCCTAC-AGGGTATTACGG
*
65882616 TCATTTTACCCTACAGGAGTATAACGG
1 TCATTTTACCCTACAGG-GTATTACGG
* *
65882643 TCATTTTACCCTATAGGGGTATTACAG
1 TCATTTTACCCTACA-GGGTATTACGG
*
65882670 TTATTTTACC
1 TCATTTTACC
65882680 TATTTTAGGG
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
26 4 0.04
27 94 0.93
28 3 0.03
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGTATTACGG
Found at i:65886644 original size:27 final size:27
Alignment explanation
Indices: 65886614--65886781 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
65886604 TAATCATCAA
* * *
65886614 TTTACCATACATGGGTATTGCGGTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* * *
65886641 TTTACCATAC-AGGGCTATTATGGTTAT
1 TTTACCCTACAAGGG-TATTACGGTCAT
* *
65886668 TTTACCCTACAGGGGCATTACGGTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
*
65886695 TTTACCCTACAGGGGTATTACGGTCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* * *
65886722 TTTACCCTATAAGGGCATTACGATCAT
1 TTTACCCTACAAGGGTATTACGGTCAT
* * *
65886749 TTTATCCTACAAAGGTATTACGGTTAT
1 TTTACCCTACAAGGGTATTACGGTCAT
65886776 TTTACC
1 TTTACC
65886782 TATTTTGGGG
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
26 3 0.03
27 112 0.95
28 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAAGGGTATTACGGTCAT
Found at i:65886751 original size:81 final size:81
Alignment explanation
Indices: 65886614--65886781 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 81
65886604 TAATCATCAA
* * * * *
65886614 TTTACCATACATGGGTATTGCGGTCATTTTACCATACAGGGCTATTATGGTTATTTTACCCTACA
1 TTTACCATACAGGGGTATTACGGTCATTTTACCATACAGGGCTATTACGATCATTTTACCCTACA
**
65886679 GGGGCATTACGGTCAT
66 AAGGCATTACGGTCAT
* *
65886695 TTTACCCTACAGGGGTATTACGGTCATTTTACCCTATA-AGGGC-ATTACGATCATTTTATCCTA
1 TTTACCATACAGGGGTATTACGGTCATTTTA-CC-ATACAGGGCTATTACGATCATTTTACCCTA
* *
65886758 CAAAGGTATTACGGTTAT
64 CAAAGGCATTACGGTCAT
65886776 TTTACC
1 TTTACC
65886782 TATTTTGGGG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
81 64 0.86
82 7 0.09
83 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TTTACCATACAGGGGTATTACGGTCATTTTACCATACAGGGCTATTACGATCATTTTACCCTACA
AAGGCATTACGGTCAT
Found at i:65905032 original size:40 final size:40
Alignment explanation
Indices: 65904949--65905172 Score: 247
Period size: 40 Copynumber: 5.5 Consensus size: 40
65904939 ACCCAAGTAT
* * *
65904949 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGT
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
65904988 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
65905028 CTTCGGGACTTAGCCCAGATATAGTTACTGGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
65905068 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCCCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
65905111 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
65905151 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
65905173 CATCCGAATA
Statistics
Matches: 154, Mismatches: 24, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
39 11 0.07
40 108 0.70
41 1 0.01
43 34 0.22
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:65905145 original size:83 final size:79
Alignment explanation
Indices: 65904949--65905172 Score: 270
Period size: 83 Copynumber: 2.8 Consensus size: 79
65904939 ACCCAAGTAT
* * * *
65904949 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGTCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
* **
65905014 ACTAGCATGAATGC
66 ACTACCACAAATGC
* * * *
65905028 CTTCGGGACTTAGCCCAGATATAGTTACTGGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
65905092 CAACTACTCCCACAAATGC
65 C-ACTA---CCACAAATGC
* *
65905111 CTTCGGGACTTAGCCTGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
65905173 CATCCGAATA
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
79 13 0.11
80 47 0.38
82 2 0.02
83 61 0.50
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC
ACTACCACAAATGC
Found at i:65916618 original size:48 final size:48
Alignment explanation
Indices: 65916547--65916838 Score: 413
Period size: 48 Copynumber: 6.0 Consensus size: 48
65916537 CAAGATAAAT
*
65916547 ATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
65916595 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
65916643 ATATATATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* ** * *
65916691 ATATGTATATGTGGTAAAGCCAAATGGCTAACATGAAATATGTATAAGAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA--TATATGAG
* * *
65916741 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
65916789 ATATGTATATTTGGTAAAGTCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
65916837 AT
1 AT
65916839 GTGTGTATAT
Statistics
Matches: 219, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
48 178 0.81
50 41 0.19
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:65916778 original size:98 final size:98
Alignment explanation
Indices: 65916541--65916832 Score: 464
Period size: 96 Copynumber: 3.0 Consensus size: 98
65916531 GATGTACAAG
*
65916541 ATAA-ATATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
1 ATAAGATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
65916605 GTGGTAAAGCCGAATGGCTAATGTGAAATATGT
66 GTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* * * *
65916638 AT--GAGATATATATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAGATATGTATAT
1 ATAAGATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
* **
65916701 GTGGTAAAGCCAAATGGCTAACATGAAATATGT
66 GTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
65916734 ATAAGATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 ATAAGATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
* *
65916799 TTGGTAAAGTCGAATGGCTAATGTGAAATATGT
66 GTGGTAAAGCCGAATGGCTAATGTGAAATATGT
65916832 A
1 A
65916833 GGAGATGTGT
Statistics
Matches: 174, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
96 87 0.50
97 2 0.01
98 85 0.49
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (98 bp):
ATAAGATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATAT
GTGGTAAAGCCGAATGGCTAATGTGAAATATGT
Found at i:65916848 original size:98 final size:97
Alignment explanation
Indices: 65916552--65916838 Score: 459
Period size: 98 Copynumber: 3.0 Consensus size: 97
65916542 TAAATATATG
65916552 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
65916617 AATGGCTAATGTGAAATATGTATGAGA-TATA
66 AATGGCTAATGTGAAATATGTATGAGATTATA
* * * *
65916648 TATATGTGGTAAAGCCAAATGGCTAATATGAAATATATATGAGATATGTATATGTGGTAAAGCCA
1 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
** *
65916713 AATGGCTAACATGAAATATGTATAAGATATATA
66 AATGGCTAATGTGAAATATGTATGAGAT-TATA
* * *
65916746 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTAAAGTCG
1 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
*
65916811 AATGGCTAATGTGAAATATGTAGGAGAT
66 AATGGCTAATGTGAAATATGTATGAGAT
65916839 GTGTGTATAT
Statistics
Matches: 171, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
96 85 0.50
98 86 0.50
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (97 bp):
TATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATGTATGAGATTATA
Found at i:65917022 original size:37 final size:37
Alignment explanation
Indices: 65916968--65917118 Score: 241
Period size: 37 Copynumber: 4.1 Consensus size: 37
65916958 ACATGAAACT
* *
65916968 TGGAGATATAT-TTCGGGTAAGACCCGATTACTACGTG
1 TGGAGAT-TATGTCCGGGTAAGACCCGATGACTACGTG
*
65917005 TGGAGATTATGTCCGGGTAAGACCCGATGACTACCTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
65917042 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* *
65917079 TGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
65917116 TGG
1 TGG
65917119 GGACTATTCG
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 3 0.03
37 104 0.97
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:65918457 original size:40 final size:40
Alignment explanation
Indices: 65918399--65918773 Score: 615
Period size: 40 Copynumber: 9.4 Consensus size: 40
65918389 TGAGAGTTAT
*
65918399 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * *
65918439 ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* * *
65918479 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
65918519 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTTGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
65918559 ATATATCTGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
65918599 ATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
65918639 ATATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
*
65918679 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
* *
65918719 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
65918759 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
65918774 ACCTCGAAGG
Statistics
Matches: 313, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 313 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:65918891 original size:57 final size:57
Alignment explanation
Indices: 65918801--65918989 Score: 220
Period size: 57 Copynumber: 3.3 Consensus size: 57
65918791 GCTGGAGTTA
* * * *
65918801 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* ** *
65918858 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTACGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * ** *
65918915 TGAGGCACTATGTGTGTGAGTTCTTTAATCGAGCGTTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
65918972 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
65918990 AGTGTGTTTC
Statistics
Matches: 111, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
56 13 0.12
57 97 0.87
58 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:65918928 original size:29 final size:29
Alignment explanation
Indices: 65918833--65918930 Score: 101
Period size: 29 Copynumber: 3.4 Consensus size: 29
65918823 CTTCAACCGA
* * *
65918833 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
** *
65918862 GCACTATGTGTGCGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
* *
65918890 GCACTATGTGTACGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
65918919 GCACTATGTGTG
1 GCACTATGTGTG
65918931 TGAGTTCTTT
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
28 22 0.40
29 33 0.60
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:65918943 original size:29 final size:29
Alignment explanation
Indices: 65918801--65918961 Score: 114
Period size: 28 Copynumber: 5.7 Consensus size: 29
65918791 GCTGGAGTTA
* * * *
65918801 TGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * * ** *
65918830 CGA-GCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
*
65918858 TGAGGCACTATGTGTGCGAGTTCTTCAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* * **
65918887 CGA-GCACTATGTGTACGAGATT-GGTAAT
1 TGAGGCACTATGTGTGCGAG-TTCTTTAAT
*
65918915 TGAGGCACTATGTGTGTGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTTAAT
* **
65918944 CGA-GCGTTATGTGTGCGA
1 TGAGGCACTATGTGTGCGA
65918962 AATCAGTCAG
Statistics
Matches: 98, Mismatches: 30, Indels: 9
0.72 0.22 0.07
Matches are distributed among these distances:
28 53 0.54
29 45 0.46
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGTTCTTTAAT
Found at i:65922571 original size:48 final size:48
Alignment explanation
Indices: 65922499--65922786 Score: 418
Period size: 48 Copynumber: 6.0 Consensus size: 48
65922489 CAAGATAAAT
** *
65922499 ATATGTATATGTGGTAAATTCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65922547 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT--G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
65922593 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
65922641 ATATGTATATGTGATAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
65922689 ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
65922737 ATATGTATATTTGGTAAAGTCGAATGACTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
65922785 AT
1 AT
65922787 GTGTGTATAT
Statistics
Matches: 215, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
46 43 0.20
48 172 0.80
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:65922609 original size:94 final size:95
Alignment explanation
Indices: 65922499--65922780 Score: 449
Period size: 94 Copynumber: 3.0 Consensus size: 95
65922489 CAAGATAAAT
*
65922499 ATATGTATATGTGGTAAATTCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
65922564 AGCCGAATGGCTAATGTGAAATATGTAT-G
66 AGCCGAATGGCTAATGTGAAATATGTATAG
** * *
65922593 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGATAA
1 ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
**
65922658 AGCCGAATGGCTAACATGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTAT-AG
* *
65922689 ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTAA
1 ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
* *
65922754 AGTCGAATGACTAATGTGAAATATGTA
66 AGCCGAATGGCTAATGTGAAATATGTA
65922781 GGAGATGTGT
Statistics
Matches: 169, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
94 86 0.51
96 83 0.49
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.33
Consensus pattern (95 bp):
ATATATATATGTGGTAAATTCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATAG
Found at i:65922968 original size:37 final size:37
Alignment explanation
Indices: 65922916--65923066 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
65922906 ACATGAAACT
65922916 TGGAGATATAT-TCCGGGTAAGACCCGATGACTACGTG
1 TGGAGAT-TATGTCCGGGTAAGACCCGATGACTACGTG
65922953 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
65922990 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* * * *
65923027 TGGAGATTTTATCTGGGTAAGACCCGATAACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
65923064 TGG
1 TGG
65923067 GGACTATTCG
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 3 0.03
37 106 0.97
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:65935963 original size:40 final size:39
Alignment explanation
Indices: 65935919--65936104 Score: 266
Period size: 40 Copynumber: 4.7 Consensus size: 39
65935909 ATTTGATGTG
* *
65935919 GTATCCGGGTATAAAGATCCGCAGGCTATATGCTGGAAGT
1 GTATCCGGGT-TAAAGACCCGCAGGCTATATGCTGGAATT
65935959 GTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCCGGG-TTAAAGACCCGCAGGCTATATGCTGGAATT
*
65935999 GTATTCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCCGGG-TTAAAGACCCGCAGGCTATATGCTGGAATT
* *
65936039 GTATCCGGGCATAAAGACCCGCAGGCT-TCATGCTGGAATG
1 GTATCCGGG-TTAAAGACCCGCAGGCTAT-ATGCTGGAATT
*
65936079 GTATCCGGGTTAAAGACCCGTAGGCT
1 GTATCCGGGTTAAAGACCCGCAGGCT
65936105 TGCACTAGAA
Statistics
Matches: 136, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
39 16 0.12
40 119 0.88
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (39 bp):
GTATCCGGGTTAAAGACCCGCAGGCTATATGCTGGAATT
Found at i:65943757 original size:40 final size:38
Alignment explanation
Indices: 65943713--65943858 Score: 179
Period size: 40 Copynumber: 3.7 Consensus size: 38
65943703 ATTTGATGTG
*
65943713 GTATCCGGGTATAAAGACCCGCAGGCTATATGCTAGAAGT
1 GTATCCGGGT-TAAAGACCCGCAGGCTATATGCTGGAA-T
65943753 GTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCCGGG-TTAAAGACCCGCAGGCTATATGCTGGAA-T
65943793 GTATCC-GGTCATAAAGACCCGCAGGCT-TCATGCTGGAAT
1 GTATCCGGGT--TAAAGACCCGCAGGCTAT-ATGCTGGAAT
* *
65943832 GGTATCCGGGTTAAAGACTCGTAGGCT
1 -GTATCCGGGTTAAAGACCCGCAGGCT
65943859 TGCACTAGAA
Statistics
Matches: 96, Mismatches: 4, Indels: 13
0.85 0.04 0.12
Matches are distributed among these distances:
38 1 0.01
39 18 0.19
40 73 0.76
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
GTATCCGGGTTAAAGACCCGCAGGCTATATGCTGGAAT
Found at i:65946629 original size:10 final size:10
Alignment explanation
Indices: 65946614--65946640 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
65946604 AAATAAGTTT
65946614 AAGGGTTTCA
1 AAGGGTTTCA
65946624 AAGGGTTTCA
1 AAGGGTTTCA
65946634 AAGGGTT
1 AAGGGTT
65946641 AAAACTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (10 bp):
AAGGGTTTCA
Found at i:65949325 original size:14 final size:14
Alignment explanation
Indices: 65949306--65949361 Score: 85
Period size: 14 Copynumber: 4.0 Consensus size: 14
65949296 AAGGAATGGT
65949306 CGAAATGGTATGAA
1 CGAAATGGTATGAA
*
65949320 CGAAATGGTATGGA
1 CGAAATGGTATGAA
*
65949334 TGAAATGGTATGAA
1 CGAAATGGTATGAA
*
65949348 CGAAAGGGTATGAA
1 CGAAATGGTATGAA
65949362 TGAATTGGTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.41, C:0.05, G:0.32, T:0.21
Consensus pattern (14 bp):
CGAAATGGTATGAA
Found at i:65949338 original size:28 final size:28
Alignment explanation
Indices: 65949307--65949370 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
65949297 AGGAATGGTC
* *
65949307 GAAATGGTATGAACGAAATGGTATGGAT
1 GAAATGGTATGAACGAAAGGGTATGAAT
65949335 GAAATGGTATGAACGAAAGGGTATGAAT
1 GAAATGGTATGAACGAAAGGGTATGAAT
*
65949363 GAATTGGT
1 GAAATGGT
65949371 CGATTTAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.33, T:0.25
Consensus pattern (28 bp):
GAAATGGTATGAACGAAAGGGTATGAAT
Found at i:65952846 original size:12 final size:12
Alignment explanation
Indices: 65952829--65952879 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
65952819 CAAAACAAAA
65952829 TTTTTTGAACTT
1 TTTTTTGAACTT
** *
65952841 TTTTTT-TTCTAA
1 TTTTTTGAACT-T
65952853 TTTTTTGAACTT
1 TTTTTTGAACTT
65952865 TTTTTTGAA-TT
1 TTTTTTGAACTT
65952876 TTTT
1 TTTT
65952880 CACTTACTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
11 8 0.26
12 21 0.68
13 2 0.06
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.73
Consensus pattern (12 bp):
TTTTTTGAACTT
Found at i:65954515 original size:27 final size:27
Alignment explanation
Indices: 65954483--65954953 Score: 156
Period size: 27 Copynumber: 17.4 Consensus size: 27
65954473 ATAGTTTACC
* * *
65954483 AAATTACCAAAGTACCCCCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* ** *
65954510 GAATTACC-GTTCTACCCTCAATTTATA
1 AAATTACCAAAT-TACCCTCGATTTATA
* **
65954537 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* * *** *
65954564 GAATTATCGTTTTACCCTCGATTTAAA
1 AAATTACCAAATTACCCTCGATTTATA
* * * *
65954591 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
* * * *
65954618 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACCAAATTACCCTC-GATTTATA
*
65954646 AAATTACTGAAA-TACCCTCGACTTGTA-A
1 AAATTAC-CAAATTACCCTCGA-TT-TATA
*
65954674 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAATTACCCTCGATTTATA
* * ** *
65954701 GAATTACTATTTTACCCTCGATTTACA
1 AAATTACCAAATTACCCTCGATTTATA
* * ** *
65954728 GAATTACTATTTTACCC-CAGATTTACA
1 AAATTACCAAATTACCCTC-GATTTATA
** * *
65954755 AAATTACCATTTTACCCTCGA-TTGTG
1 AAATTACCAAATTACCCTCGATTTATA
* * * ***
65954781 AAATTACTAAAATACCC-CTATAGGGTA
1 AAATTACCAAATTACCCTCGAT-TTATA
* ** * *
65954808 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACCAAATTACCCTCGA-TTTATA
* * * *
65954835 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAATTACC-CTCGATTTATA
* *
65954862 AAATTACCGAAA-TACCCTCAATTTGTA
1 AAATTACC-AAATTACCCTCGATTTATA
* * *
65954889 AAATTACCAAAATACCC-CTAATTTACA
1 AAATTACCAAATTACCCTC-GATTTATA
* * *
65954916 AAATTA-CAGAAATACCCTTGATTTGTA
1 AAATTACCA-AATTACCCTCGATTTATA
* *
65954943 GATTTACCAAA
1 AAATTACCAAA
65954954 ACACCCTTGT
Statistics
Matches: 354, Mismatches: 67, Indels: 46
0.76 0.14 0.10
Matches are distributed among these distances:
25 2 0.01
26 27 0.08
27 270 0.76
28 51 0.14
29 4 0.01
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAATTACCCTCGATTTATA
Found at i:65954752 original size:54 final size:53
Alignment explanation
Indices: 65954495--65954777 Score: 178
Period size: 54 Copynumber: 5.2 Consensus size: 53
65954485 ATTACCAAAG
* ** * * * *
65954495 TACCCCCGATTTACAGAATTACCGTTCTACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTA-AGAATTACTATTTTACCCTCGATTTATAAAATTACTATTT
* * ***
65954549 TACCCTCGATTTATAGAATTA-TCGTTTTACCCTCGATTTAAAAAATTACTAAAA
1 TACCCTCGATTTA-AGAATTACT-ATTTTACCCTCGATTTATAAAATTACTATTT
* * *** * * **
65954603 TACCCCTGGTTTGTAA-AATTACTAAAATACCCCCTGATTTGTAAAATTACTGA-AA
1 TA-CCCTCGATT-TAAGAATTACTATTTTACCCTC-GATTTATAAAATTACT-ATTT
* * *** *
65954658 TACCCTCGACTTGTAAAAATTACCAAAGTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGA-TT-TAAGAATTACTATTTTACCCTCGATTTATAAAATTACTATTT
* *
65954713 TACCCTCGATTTACAGAATTACTATTTTACCC-CAGATTTACAAAATTACCATTT
1 TACCCTCGATTTA-AGAATTACTATTTTACCCTC-GATTTATAAAATTACTATTT
65954767 TACCCTCGATT
1 TACCCTCGATT
65954778 GTGAAATTAC
Statistics
Matches: 181, Mismatches: 37, Indels: 22
0.75 0.15 0.09
Matches are distributed among these distances:
53 3 0.02
54 104 0.57
55 56 0.31
56 18 0.10
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (53 bp):
TACCCTCGATTTAAGAATTACTATTTTACCCTCGATTTATAAAATTACTATTT
Found at i:65954920 original size:54 final size:54
Alignment explanation
Indices: 65954584--65954959 Score: 201
Period size: 54 Copynumber: 6.9 Consensus size: 54
65954574 TTTACCCTCG
* ** * * *
65954584 ATTTAAAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACTAAAATACCCCCTG
1 ATTTATAAAATTACCGAAATACCCTC-GATTTGTAAAATTACCAAAATA-CCCCTA
* * * * *
65954639 ATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAGTA-CCCTCG
1 ATTTATAAAATTACCGAAATACCCTCGATTTGT-AAAATTACCAAAATACCCCT-A
* * ** ** * * ***
65954694 ATTTATAGAATTA-CTATTTTACCCTCGATTTACAGAATTACTATTTTACCCC-A
1 ATTTATAAAATTACCGA-AATACCCTCGATTTGTAAAATTACCAAAATACCCCTA
* ** * *
65954747 GATTTACAAAATTACC-ATTTTACCCTCGA-TTGTGAAATTACTAAAATACCCCT-
1 -ATTTATAAAATTACCGA-AATACCCTCGATTTGTAAAATTACCAAAATACCCCTA
*** * * * * * *
65954800 ATAGGGTAGAATTACCAAAACACCC-CTAGTTTGTAAAATTACCAAAATACCACTG
1 AT-TTATAAAATTACCGAAATACCCTCGA-TTTGTAAAATTACCAAAATACCCCTA
* * * *
65954855 GTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTA
1 ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTA
* * * * * *
65954909 ATTTACAAAATTACAGAAATACCCTTGATTTGTAGATTTACCAAAACACCC
1 ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCC
65954960 TTGTAGGATG
Statistics
Matches: 244, Mismatches: 63, Indels: 29
0.73 0.19 0.09
Matches are distributed among these distances:
52 4 0.02
53 28 0.11
54 142 0.58
55 56 0.23
56 14 0.06
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
ATTTATAAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTA
Found at i:65954950 original size:81 final size:81
Alignment explanation
Indices: 65954748--65954960 Score: 186
Period size: 81 Copynumber: 2.6 Consensus size: 81
65954738 TTTACCCCAG
*** * * * ** *
65954748 ATTTACAAAATTACCATTTTACC-CTCGA-TTGTGAAATTACTAAAATACCC-CTATAGGGTAGA
1 ATTTACAAAATTACCAAAATACCACT-GATTTGTGAAATTACCAAAACACCCTCAAT-TTGTAAA
65954810 ATTACCAAAACACCCCTA
64 ATTACCAAAACACCCCTA
* ** * * *
65954828 GTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAAT
1 ATTTACAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAACACCCTCAATTTGTAAAAT
*
65954893 TACCAAAATACCCCTA
66 TACCAAAACACCCCTA
*
65954909 ATTTACAAAATTA-CAGAAATACC-CTTGATTTGT-AGATTTACCAAAACACCCT
1 ATTTACAAAATTACCA-AAATACCAC-TGATTTGTGA-AATTACCAAAACACCCT
65954961 TGTAGGATGA
Statistics
Matches: 106, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
80 22 0.21
81 81 0.76
82 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
ATTTACAAAATTACCAAAATACCACTGATTTGTGAAATTACCAAAACACCCTCAATTTGTAAAAT
TACCAAAACACCCCTA
Found at i:65955789 original size:20 final size:20
Alignment explanation
Indices: 65955764--65955830 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
65955754 GATATTATAT
*
65955764 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
65955784 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
65955804 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
65955824 ACATGAT
1 ACATGAT
65955831 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:65955909 original size:26 final size:26
Alignment explanation
Indices: 65955880--65956015 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
65955870 GAGGAAGTGC
65955880 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
65955906 AAAAGGGCTTATGCCCAAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
65955932 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
65955958 AAAAGGGC-TGTGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
65955983 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
65956006 AAAAGAGGCT
1 AAAAG-GGCT
65956016 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 31 0.32
26 53 0.55
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:65956207 original size:42 final size:42
Alignment explanation
Indices: 65956148--65956239 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
65956138 TAGTCTCCCC
* ** *
65956148 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
65956190 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
65956232 AAATGGGC
1 AAATGGGC
65956240 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:65956298 original size:31 final size:31
Alignment explanation
Indices: 65956263--65956339 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
65956253 CGTTTACAGT
65956263 AAAGGCTTCGGCCCAATGAAATGATTTATGA
1 AAAGGCTTCGGCCCAATGAAATGATTTATGA
** *
65956294 AAAGGCTTCGGCCCTGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGAAATGATTTATGA
* *
65956325 AAAAGCTTCAGCCCA
1 AAAGGCTTCGGCCCA
65956340 GTAACCATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGAAATGATTTATGA
Found at i:65958151 original size:27 final size:27
Alignment explanation
Indices: 65958121--65958223 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
65958111 ATTACCAAAG
* * * *
65958121 TACCCCCGATTTACAGAATTACTGTTC
1 TACCCTCGATTTATAGAATTACCGTTT
*
65958148 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
65958175 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
65958202 TACCCTCGATTTAAAAAATTAC
1 TACCCTCGATTTATAGAATTAC
65958224 TAAAATACCC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Done.