Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 205 of 290
Found at i:66157040 original size:16 final size:18
Alignment explanation
Indices: 66157014--66157049 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
66157004 CATAAAAAAG
66157014 AAGGAAAAAGAAA-TAAA
1 AAGGAAAAAGAAAGTAAA
66157031 AAGG-AAAAGAAAGTAAA
1 AAGGAAAAAGAAAGTAAA
66157048 AA
1 AA
66157050 AAACAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (18 bp):
AAGGAAAAAGAAAGTAAA
Found at i:66157082 original size:23 final size:24
Alignment explanation
Indices: 66157030--66157075 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
66157020 AAAGAAATAA
* *
66157030 AAAGGAAAAGAAAGTAAAAAAAAC
1 AAAGAAAAAGAAAATAAAAAAAAC
66157054 AAAGAAAAAGAAAATAAAAAAA
1 AAAGAAAAAGAAAATAAAAAAA
66157076 TAGAGAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.04
Consensus pattern (24 bp):
AAAGAAAAAGAAAATAAAAAAAAC
Found at i:66157199 original size:19 final size:19
Alignment explanation
Indices: 66157162--66157200 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
66157152 GTTTTTAATC
*
66157162 ATTTAATACTTTTTTAAAA
1 ATTTAATACTTTTTAAAAA
66157181 ATTTATATAC-TTTTAAAAA
1 ATTTA-ATACTTTTTAAAAA
66157200 A
1 A
66157201 AGATTCTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTAATACTTTTTAAAAA
Found at i:66157200 original size:20 final size:19
Alignment explanation
Indices: 66157162--66157201 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
66157152 GTTTTTAATC
**
66157162 ATTTAATACTTTTTTAAAA
1 ATTTAATACTTTTAAAAAA
66157181 ATTTATATACTTTTAAAAAA
1 ATTTA-ATACTTTTAAAAAA
66157201 A
1 A
66157202 GATTCTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTAATACTTTTAAAAAA
Found at i:66157486 original size:23 final size:24
Alignment explanation
Indices: 66157455--66157502 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
66157445 TTGCCTTTTT
*
66157455 TATAATTTTT-AATTTTTTTAAAA
1 TATAATTTTTAAAATTTTTTAAAA
*
66157478 TATATTTTTTAAAATTTTTTAAAA
1 TATAATTTTTAAAATTTTTTAAAA
66157502 T
1 T
66157503 GATTTTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATAATTTTTAAAATTTTTTAAAA
Found at i:66157507 original size:23 final size:23
Alignment explanation
Indices: 66157460--66157508 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
66157450 TTTTTTATAA
* *
66157460 TTTTTAATTTTTTTAAAATATAT
1 TTTTTAAATTTTTTAAAATAGAT
66157483 TTTTTAAAATTTTTTAAAAT-GAT
1 TTTTT-AAATTTTTTAAAATAGAT
66157506 TTT
1 TTT
66157509 CATTATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTTTAAATTTTTTAAAATAGAT
Found at i:66161226 original size:2 final size:2
Alignment explanation
Indices: 66161219--66161248 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
66161209 CTGGAAAATT
*
66161219 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
66161249 AAGCAAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:66171713 original size:14 final size:15
Alignment explanation
Indices: 66171693--66171723 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
66171683 AATGCTGGCG
*
66171693 AAAAAAATGACAAAC
1 AAAAAAATGAAAAAC
66171708 AAAAAAATGAAAAAC
1 AAAAAAATGAAAAAC
66171723 A
1 A
66171724 CCCAGTCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.10, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAAAATGAAAAAC
Found at i:66181937 original size:42 final size:44
Alignment explanation
Indices: 66181870--66182065 Score: 298
Period size: 43 Copynumber: 4.6 Consensus size: 44
66181860 ACCGCATTAC
*
66181870 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCA-TGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTGAA
*
66181913 GCCTGCTAGGCACGAA-GCCCGAAT--ACATCACTGGCAC-GAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTGAA
*
66181953 GCCTGCTAGGCACGTAGGCCCGAATACACATCACCGGCACT-AA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTGAA
*
66181996 G-CTGCTAGGCACGAAGGCCCGAATACACAATCACCGGCACTAAA
1 GCCTGCTAGGCACGAAGGCCCGAATACAC-ATCACCGGCACTGAA
66182040 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
66182066 TAATACCAGC
Statistics
Matches: 140, Mismatches: 5, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
40 29 0.21
41 8 0.06
42 33 0.24
43 43 0.31
44 3 0.02
45 24 0.17
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.13
Consensus pattern (44 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACTGAA
Found at i:66182016 original size:83 final size:86
Alignment explanation
Indices: 66181870--66182065 Score: 294
Period size: 83 Copynumber: 2.3 Consensus size: 86
66181860 ACCGCATTAC
*
66181870 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGCCCGA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGCCCGA
* *
66181935 AT-AC-ATCACTGGCAC-GAA
66 ATAACAATCACCGGCACTAAA
*
66181953 GCCTGCTAGGCACGTAGGCCCGAATACACATCACCGGCACT-AAG-CTGCTAGGCACGAAGGCCC
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCA-TGAAGCCTGCTAGGCACGAA-GCCC
66182016 GAATACACAATCACCGGCACTAAA
64 GAATA-ACAATCACCGGCACTAAA
66182040 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
66182066 TAATACCAGC
Statistics
Matches: 102, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
82 14 0.14
83 48 0.47
84 1 0.01
85 2 0.02
86 10 0.10
87 27 0.26
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.13
Consensus pattern (86 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGCCCGA
ATAACAATCACCGGCACTAAA
Found at i:66182107 original size:34 final size:33
Alignment explanation
Indices: 66182067--66182138 Score: 99
Period size: 34 Copynumber: 2.2 Consensus size: 33
66182057 GCCCGAATAT
* * * *
66182067 AATACCAGCACTAGGCCTGCGGGATTTATCCCG
1 AATACCAGCACGAAGCCTGCAGGATTTAACCCG
66182100 ATATACCAGCACGAAGCCTGCAGGATTTAACCCG
1 A-ATACCAGCACGAAGCCTGCAGGATTTAACCCG
66182134 AATAC
1 AATAC
66182139 ACATCAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 5 0.15
34 29 0.85
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (33 bp):
AATACCAGCACGAAGCCTGCAGGATTTAACCCG
Found at i:66195208 original size:27 final size:27
Alignment explanation
Indices: 66195178--66195355 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
66195168 ATATTGAGCC
* *
66195178 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
66195205 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66195232 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*** ** *
66195260 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
66195287 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
66195314 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
66195341 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66195356 GTACAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.79
28 22 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66195290 original size:55 final size:54
Alignment explanation
Indices: 66195178--66195355 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
66195168 ATATTGAGCC
* * *
66195178 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
* * * *
66195232 CGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTG-C-CGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACGTA--ATCAAAT
* * ** * *
66195287 CGCACTCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-AAAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACGTAA-TCA-AAT
66195341 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66195356 GTACAATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
53 5 0.05
54 52 0.53
55 40 0.41
56 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
Found at i:66200636 original size:43 final size:42
Alignment explanation
Indices: 66200575--66200785 Score: 332
Period size: 43 Copynumber: 4.9 Consensus size: 42
66200565 ACATATCATT
* *
66200575 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCTGAATACACA
1 TCACCGGCA-TAAGCCTGCTAGGCACGAAGGCCCGAATACACA
66200618 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCAT-AAGCCTGCTAGGCACGAAGGCCCGAATACACA
* * *
66200661 TCACTGGCACGAAGCCTGCTAGGCACGCAGGCCCGAATACACA
1 TCACCGGCA-TAAGCCTGCTAGGCACGAAGGCCCGAATACACA
66200704 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCA-TAAGCCTGCTAGGCACGAAGGCCCGAATACACA
66200747 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCA-TAAGCCTGCTAGGCACGAAGGCCCGAATA
66200786 TAATACCAGC
Statistics
Matches: 158, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
42 1 0.01
43 157 0.99
ACGTcount: A:0.29, C:0.34, G:0.25, T:0.13
Consensus pattern (42 bp):
TCACCGGCATAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:66200831 original size:37 final size:37
Alignment explanation
Indices: 66200778--66200857 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66200768 GGCACGAAGG
* * * *
66200778 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCG-ATATAATACCAGCACGAAGCCTGCAGGATTTAA
66200816 CCCGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGATATAATACCAGCACGAAGCCTGCAGGATTTAA
66200853 CCCGA
1 CCCGA
66200858 ATACACATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 34 0.89
38 4 0.11
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (37 bp):
CCCGATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:66207768 original size:27 final size:27
Alignment explanation
Indices: 66207730--66207787 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
66207720 GCCCATGAAA
*
66207730 TGCCGAAAATTTCGGCATTTCGGCTTT
1 TGCCAAAAATTTCGGCATTTCGGCTTT
*
66207757 TGCCAAAAATTTCGGCATTTTGGCTTT
1 TGCCAAAAATTTCGGCATTTCGGCTTT
66207784 TGCC
1 TGCC
66207788 GAATTGAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
TGCCAAAAATTTCGGCATTTCGGCTTT
Found at i:66223064 original size:27 final size:27
Alignment explanation
Indices: 66223010--66223066 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
66223000 ACATCACATA
* **
66223010 GGGCATAACAGTCATTTTAGTGTATAG
1 GGGCATAACAATCATTTTAGTCAATAG
66223037 GGGCATAACAATCATTTTA-TCAATTAG
1 GGGCATAACAATCATTTTAGTCAA-TAG
66223064 GGG
1 GGG
66223067 GTCTAGGTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (27 bp):
GGGCATAACAATCATTTTAGTCAATAG
Found at i:66230539 original size:17 final size:18
Alignment explanation
Indices: 66230517--66230562 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
66230507 ACTTGTTATA
*
66230517 GCCCGATAAATGAA-AGT
1 GCCCGATAAATGAATAAT
*
66230534 GCCCGATTAAT-AATAAT
1 GCCCGATAAATGAATAAT
*
66230551 GCTCGATAAATG
1 GCCCGATAAATG
66230563 GTAAATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (18 bp):
GCCCGATAAATGAATAAT
Found at i:66242395 original size:11 final size:11
Alignment explanation
Indices: 66242361--66242409 Score: 57
Period size: 11 Copynumber: 4.4 Consensus size: 11
66242351 TATTCTATAT
66242361 AATTGTGATTA
1 AATTGTGATTA
66242372 AATTGAATG-TT-
1 AATTG--TGATTA
66242383 AATATGTGATTA
1 AAT-TGTGATTA
66242395 AATTGTGATTA
1 AATTGTGATTA
66242406 AATT
1 AATT
66242410 AATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
10 2 0.06
11 22 0.67
12 7 0.21
13 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (11 bp):
AATTGTGATTA
Found at i:66247301 original size:55 final size:54
Alignment explanation
Indices: 66247212--66247467 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
66247202 CATTAGGGTT
* **
66247212 CAAGGATACCATGTAATACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
66247267 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * *
66247322 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
66247375 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * * *
66247425 -AGGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
66247468 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 66 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:66247419 original size:108 final size:110
Alignment explanation
Indices: 66247220--66247420 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
66247210 TTCAAGGATA
* * * *
66247220 CCATGTAATACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
66247285 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
66247330 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
66247392 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
66247421 TCAAAGGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:66247457 original size:49 final size:51
Alignment explanation
Indices: 66247279--66247467 Score: 170
Period size: 53 Copynumber: 3.6 Consensus size: 51
66247269 AGGAAATCAT
* * * * *
66247279 GTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG-TCCCAT
1 GTAAGACCATGACAAGACATGGCAATGGTAAGTT-C-ATAAGG---AGGATACCAC
* * * * *
66247334 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCAT
1 GTAAGACCATGACAAGACATGGCAATGGTAAGTTCATAAGG--AGGATACCAC
*
66247387 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCA-AA-G-GGATACCAC
1 GTAAGACCATGACAAGACATGGCAATGGTAAG-TTCATAAGGAGGATACCAC
*
66247436 GTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GTAAGACCATGACAAGACATGGCAATGGTAAG
66247468 GTACCCGTGT
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
49 38 0.32
52 5 0.04
53 41 0.34
54 5 0.04
55 30 0.25
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (51 bp):
GTAAGACCATGACAAGACATGGCAATGGTAAGTTCATAAGGAGGATACCAC
Found at i:66247684 original size:16 final size:16
Alignment explanation
Indices: 66247663--66247693 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66247653 ATAAATTTGA
66247663 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
66247679 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
66247694 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:66251253 original size:39 final size:38
Alignment explanation
Indices: 66251148--66251369 Score: 211
Period size: 39 Copynumber: 5.7 Consensus size: 38
66251138 TTGAATGCTG
* *
66251148 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-ATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACA-A-A
**
66251188 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TACAAA
*
66251227 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTAC-AAA
* *
66251266 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-CAAA
*
66251305 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TAC-AAA
* * *
66251344 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
66251370 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 14, Indels: 24
0.80 0.07 0.12
Matches are distributed among these distances:
38 21 0.13
39 91 0.58
40 34 0.22
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACAAA
Found at i:66251286 original size:78 final size:77
Alignment explanation
Indices: 66251148--66251369 Score: 252
Period size: 78 Copynumber: 2.8 Consensus size: 77
66251138 TTGAATGCTG
* * * * *
66251148 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
66251212 TGTGCGAG-ATACAAA
63 TGTGCGAGTAT-CAAA
* *
66251227 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
66251291 GTGCGAGTATTAAA
64 GTGCGAGTATCAAA
* * * *
66251305 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
66251370 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 21 0.17
78 71 0.58
79 13 0.11
80 18 0.15
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTATCAAA
Found at i:66251360 original size:117 final size:119
Alignment explanation
Indices: 66251148--66251402 Score: 263
Period size: 117 Copynumber: 2.2 Consensus size: 119
66251138 TTGAATGCTG
* * *
66251148 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTT
* * * ** *
66251213 GTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCTTTGTGCGAGTA-CTAAA
66 GTGCGAGATACAAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGGAGCTAAA
* * **
66251266 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGT-ATTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
66251327 TTGTGTGAGTTACTAAA-ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATAC-AAATACCGGGCTAAG-CCCGAAGGCATTTGAACGAGGAGCTAAA
*
66251384 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66251403 TACGTGATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
116 20 0.18
117 58 0.51
118 30 0.26
119 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACAAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGGAGCTAAA
Found at i:66251391 original size:78 final size:78
Alignment explanation
Indices: 66251228--66251402 Score: 203
Period size: 78 Copynumber: 2.3 Consensus size: 78
66251218 AGATACAAAT
* * *
66251228 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
66251292 TGCGAGTATTAAA
66 AACGAGGACTAAA
* * *
66251305 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
66251369 GAACGAGGAGCTATA
65 GAACGAGGA-CTAAA
*
66251384 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
66251403 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
77 20 0.24
78 57 0.69
79 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGGACTAAA
Found at i:66258760 original size:67 final size:68
Alignment explanation
Indices: 66258677--66258817 Score: 232
Period size: 67 Copynumber: 2.1 Consensus size: 68
66258667 GAAATATGAA
* *
66258677 TGTGCCATGAATTATTGTTAGATGTGCATGATTAATTGAATGTTGTCCGGGCTAAG-TCCCGAAG
1 TGTG-CATGAATTATTGTTAGATGTGCATGATTAATTGAATGCTGTCCGGACTAAGAT-CCGAAG
66258741 GC-TT
64 GCATT
66258745 TGTGCATGAATTATTGTTAGATGTGCATGATTAATTGAATGCTGTCCGGACTAAGATCCGAAGGC
1 TGTGCATGAATTATTGTTAGATGTGCATGATTAATTGAATGCTGTCCGGACTAAGATCCGAAGGC
66258810 ATT
66 ATT
66258813 TGTGC
1 TGTGC
66258818 GAGATACAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
67 57 0.83
68 12 0.17
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (68 bp):
TGTGCATGAATTATTGTTAGATGTGCATGATTAATTGAATGCTGTCCGGACTAAGATCCGAAGGC
ATT
Found at i:66258885 original size:39 final size:39
Alignment explanation
Indices: 66258802--66259006 Score: 225
Period size: 39 Copynumber: 5.2 Consensus size: 39
66258792 GGACTAAGAT
* *
66258802 CCGAAGGCATTTGTGCGAGATACAAATATCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAG-TACTAA-ATCCGGGTTAAGTC
*
66258843 CCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTC
* *
66258882 CCGAAGGCATTCGTGCGAAGTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCG-AGTACTAAATCCGGGTTAAGTC
* * * *
66258922 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTC
** * * *
66258961 CCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATC
1 CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTC
66259000 CCGAAGG
1 CCGAAGG
66259007 TACGTGATTT
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
38 2 0.01
39 72 0.52
40 47 0.34
41 18 0.13
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTC
Found at i:66258945 original size:79 final size:80
Alignment explanation
Indices: 66258802--66258971 Score: 220
Period size: 79 Copynumber: 2.1 Consensus size: 80
66258792 GGACTAAGAT
* *
66258802 CCGAAGGCATTTGTGCGAGATACAAATATCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTA
1 CCGAAGGCATTCGTGCGAGATACAAATATCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGTACTA
* *
66258867 AATCCGGGTTAAGTC
66 AAACCGGGCTAAGTC
** * *
66258882 CCGAAGGCATTCGTGCGA-AGTATTAA-ATCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTAC
1 CCGAAGGCATTCGTGCGAGA-TACAAATATCCGGGTTAAGCCCCGAAGGCCATTGTGCGAG-TAC
*
66258944 TAAAACCGGGCTATGTC
64 TAAAACCGGGCTAAGTC
66258961 CCGAAGGCATT
1 CCGAAGGCATT
66258972 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
78 9 0.11
79 49 0.62
80 21 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGATACAAATATCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGTACTA
AAACCGGGCTAAGTC
Found at i:66258991 original size:79 final size:79
Alignment explanation
Indices: 66258827--66259006 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 79
66258817 CGAGATACAA
* * * *
66258827 ATATCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
66258892 TCGTGCGAAGTATT
66 TCGAACGAAGGACT
* * *
66258906 AAATCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 ATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCA
*
66258970 TTTGAACG-AGGAGCT
65 TTCGAACGAAGGA-CT
*
66258985 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGTTAAGTCCCGAAGG
66259007 TACGTGATTT
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 27 0.32
79 58 0.68
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
ATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCAT
TCGAACGAAGGACT
Found at i:66261269 original size:46 final size:46
Alignment explanation
Indices: 66261202--66261371 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
66261192 AACCTGCCCC
*
66261202 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
66261248 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
66261296 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
66261341 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
66261372 AGATGCTCAA
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:66261314 original size:93 final size:93
Alignment explanation
Indices: 66261207--66261377 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
66261197 GCCCCTAAGT
* * *
66261207 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
66261272 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
*
66261300 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66261365 CGAGTTCAGATGC
66 CGAGTTCAGATGC
66261378 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:66266404 original size:93 final size:93
Alignment explanation
Indices: 66266297--66266467 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
66266287 GCCCCTAAGT
* * *
66266297 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66266362 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
66266390 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66266455 CGAGTTCGGATGC
66 CGAGTTCGGATGC
66266468 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:66266464 original size:46 final size:46
Alignment explanation
Indices: 66266292--66266464 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
66266282 AACCTGCCCC
* * *
66266292 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
66266338 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
66266386 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
66266431 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66266465 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:66269317 original size:48 final size:48
Alignment explanation
Indices: 66269246--66269342 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
66269236 ATGTTCTCTA
66269246 AGATAGATTTGAGATCCGGATACTATCAGTTGCGAGTTAAAGAGTCAG
1 AGATAGATTTGAGATCCGGATACTATCAGTTGCGAGTTAAAGAGTCAG
*
66269294 AGATAGATTTGATATCCGGATACTATCAGTTGCGAGTTAAAGAGTCAG
1 AGATAGATTTGAGATCCGGATACTATCAGTTGCGAGTTAAAGAGTCAG
66269342 A
1 A
66269343 TGTCCTGAAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (48 bp):
AGATAGATTTGAGATCCGGATACTATCAGTTGCGAGTTAAAGAGTCAG
Found at i:66273187 original size:43 final size:45
Alignment explanation
Indices: 66273094--66273187 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 45
66273084 ATCATGTAAG
*
66273094 ACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGT
1 ACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGT
* * * *
66273139 CCCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-AAGGAT
1 ACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG-T
66273182 ACCATG
1 ACCATG
66273188 TAAGACCATG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
42 4 0.10
43 13 0.31
44 1 0.02
45 24 0.57
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (45 bp):
ACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGT
Found at i:66273188 original size:98 final size:100
Alignment explanation
Indices: 66273040--66273220 Score: 260
Period size: 98 Copynumber: 1.8 Consensus size: 100
66273030 CCATGTAATA
* * *
66273040 CCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCATGTCAAG
1 CCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCATGTCAAG
*
66273105 ACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 ACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
66273140 CCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACCATGTCAA
1 CCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACCATGTCAA
* *
66273202 GGCATGGCAATGGTAAGTT
65 GACATGGCAATGATAAGTT
66273221 TCAAAAGGAT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
97 3 0.04
98 47 0.65
99 7 0.10
100 15 0.21
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.24
Consensus pattern (100 bp):
CCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCATGTCAAG
ACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:66273484 original size:16 final size:16
Alignment explanation
Indices: 66273463--66273493 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66273453 ATAAATTTGA
66273463 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
66273479 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
66273494 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:66282661 original size:21 final size:20
Alignment explanation
Indices: 66282624--66282663 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66282614 ATAACTGAGG
*
66282624 AAATTTTTGGAAAACAGAGA
1 AAATTTTTGAAAAACAGAGA
*
66282644 AAATTTTTTAAAATACAGAG
1 AAATTTTTGAAAA-ACAGAG
66282664 GACATCACGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.50, C:0.05, G:0.15, T:0.30
Consensus pattern (20 bp):
AAATTTTTGAAAAACAGAGA
Found at i:66286095 original size:49 final size:49
Alignment explanation
Indices: 66286018--66286198 Score: 245
Period size: 49 Copynumber: 3.7 Consensus size: 49
66286008 TCTATTGTGA
* *
66286018 GGTCACATGTGTAGTACCAAGTGTAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * **
66286067 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
66286116 AGGTCACGTGGGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
66286166 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
66286199 TGCGTACCAG
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 72 0.64
50 40 0.36
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:66286188 original size:99 final size:99
Alignment explanation
Indices: 66286017--66286198 Score: 310
Period size: 99 Copynumber: 1.8 Consensus size: 99
66286007 ATCTATTGTG
* *
66286017 AGGTCACATGTGTAGTACCAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGGGTAGTACCAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
66286082 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
* * * *
66286116 AGGTCACGTGGGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGGGTAGTACCAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
66286181 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
66286199 TGCGTACCAG
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (99 bp):
AGGTCACATGGGTAGTACCAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:66300278 original size:27 final size:27
Alignment explanation
Indices: 66300248--66300425 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
66300238 ATATTGAGCC
* *
66300248 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
66300275 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
66300302 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*** ** *
66300330 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
66300357 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
66300384 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
66300411 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66300426 GTACAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.79
28 22 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66300360 original size:55 final size:54
Alignment explanation
Indices: 66300248--66300425 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
66300238 ATATTGAGCC
* * *
66300248 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
* * * *
66300302 CGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTG-C-CGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACGTA--ATCAAAT
* * ** * *
66300357 CGCACTCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-AAAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACGTAA-TCA-AAT
66300411 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66300426 GTACAATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
53 5 0.05
54 52 0.53
55 40 0.41
56 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
Found at i:66436587 original size:27 final size:27
Alignment explanation
Indices: 66436556--66436733 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
66436546 TAAATTGTAC
66436556 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66436583 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66436609 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66436637 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66436665 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
66436692 AGCACTAAGTGTGCGAGTTGATTATAG-
1 AGCACTAAGTGTGCGATTTGACTAT-GT
*
66436719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66436734 GACTTAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66436670 original size:82 final size:81
Alignment explanation
Indices: 66436557--66436712 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66436547 AAATTGTACA
* *
66436557 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66436621 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66436638 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66436703 TGCGAGTTGA
65 TGCGAATTGA
66436713 TTATAGAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66440288 original size:17 final size:17
Alignment explanation
Indices: 66440266--66440301 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
66440256 GCCGAGCAAG
66440266 AGAGTTCCAAGAGATTA
1 AGAGTTCCAAGAGATTA
66440283 AGAGTTCCAAGAGATTA
1 AGAGTTCCAAGAGATTA
66440300 AG
1 AG
66440302 GCTTGGTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (17 bp):
AGAGTTCCAAGAGATTA
Found at i:66442606 original size:37 final size:37
Alignment explanation
Indices: 66442556--66442727 Score: 134
Period size: 37 Copynumber: 4.6 Consensus size: 37
66442546 CAATTGCTTG
* *
66442556 TAAGAGCTAATCCACCCGATAACACTGCATATGGTCA
1 TAAGAGCTAATCCACCCGATAACACTGCAGATGCTCA
* *
66442593 TAAGAGCTAATCCA-ACGAATAACAC-GCTAGATGCTTA
1 TAAGAGCTAATCCACCCG-ATAACACTGC-AGATGCTCA
* * * ** **
66442630 TAAAAACTAATACACCTTATAACACACCAGATGCTCA
1 TAAGAGCTAATCCACCCGATAACACTGCAGATGCTCA
* * * *
66442667 TAAAAGCTAATCCACCAGATTACA-TGCCAAATGCTCA
1 TAAGAGCTAATCCACCCGATAACACTG-CAGATGCTCA
* * *
66442704 TAAGAGCTAGTCCAACCGAAAACA
1 TAAGAGCTAATCCACCCGATAACA
66442728 TGCTGAAACA
Statistics
Matches: 104, Mismatches: 26, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
36 4 0.04
37 99 0.95
38 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.20
Consensus pattern (37 bp):
TAAGAGCTAATCCACCCGATAACACTGCAGATGCTCA
Found at i:66442729 original size:37 final size:37
Alignment explanation
Indices: 66442530--66442730 Score: 104
Period size: 37 Copynumber: 5.5 Consensus size: 37
66442520 ACATAGATAT
* * ** *
66442530 TCCAACAG-AAACATGCCAATTGCTTGTAAGAGCTAA
1 TCCACCAGAAAACATGCCAAATGCTCATAAAAGCTAA
* * * * *
66442566 TCCACCCGATAACACTG-CATATGGTCATAAGAGCTAA
1 TCCACCAGAAAACA-TGCCAAATGCTCATAAAAGCTAA
* * * * * *
66442603 TCCAAC-GAATAACACGCTAGATGCTTATAAAAACTAA
1 TCCACCAGAA-AACATGCCAAATGCTCATAAAAGCTAA
* ** * ** *
66442640 TACACCTTATAACACACCAGATGCTCATAAAAGCTAA
1 TCCACCAGAAAACATGCCAAATGCTCATAAAAGCTAA
** * *
66442677 TCCACCAGATTACATGCCAAATGCTCATAAGAGCTAG
1 TCCACCAGAAAACATGCCAAATGCTCATAAAAGCTAA
66442714 TCCAACC-GAAAACATGC
1 TCC-ACCAGAAAACATGC
66442731 TGAAACAGTG
Statistics
Matches: 123, Mismatches: 36, Indels: 11
0.72 0.21 0.06
Matches are distributed among these distances:
36 9 0.07
37 108 0.88
38 6 0.05
ACGTcount: A:0.40, C:0.26, G:0.13, T:0.21
Consensus pattern (37 bp):
TCCACCAGAAAACATGCCAAATGCTCATAAAAGCTAA
Found at i:66446511 original size:7 final size:7
Alignment explanation
Indices: 66446499--66446539 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
66446489 ATGAAAGAAA
66446499 AGAATGT
1 AGAATGT
66446506 AGAATGT
1 AGAATGT
66446513 AGAATGT
1 AGAATGT
66446520 AGAATGT
1 AGAATGT
66446527 AGAATGT
1 AGAATGT
66446534 AGAATG
1 AGAATG
66446540 AGAGATGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (7 bp):
AGAATGT
Found at i:66446524 original size:21 final size:20
Alignment explanation
Indices: 66446499--66446547 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
66446489 ATGAAAGAAA
66446499 AGAATGTAGAATGTAGAATG
1 AGAATGTAGAATGTAGAATG
66446519 TAGAATGTAGAATGTAGAATG
1 -AGAATGTAGAATGTAGAATG
66446540 AGAGATGT
1 AGA-ATGT
66446548 GTTATGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 3 0.11
21 24 0.89
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.27
Consensus pattern (20 bp):
AGAATGTAGAATGTAGAATG
Found at i:66448793 original size:61 final size:61
Alignment explanation
Indices: 66448695--66448814 Score: 222
Period size: 61 Copynumber: 2.0 Consensus size: 61
66448685 ATATATACAA
*
66448695 CAGGATTACCAGTCCAGGCTAAATCCTGTCTCTAATATATATATACTCAATAAAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGT
*
66448756 CAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAGAGCTTA
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTA
66448815 TACTACAAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (61 bp):
CAGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGT
Found at i:66449045 original size:43 final size:42
Alignment explanation
Indices: 66448998--66449106 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
66448988 TTTAGCGGCA
*
66448998 TTTGTGAGAAAAGCGCTGCTAAAAGTCATGGC-TTTTAACGGTG
1 TTTGTG-GAAAAGCGCCGCT-AAAGTCATGGCTTTTTAACGGTG
** *
66449041 TTTGTTGGGGAAGCGCCGCTAAAGTCATGGCTTTTTAATGGTG
1 TTTG-TGGAAAAGCGCCGCTAAAGTCATGGCTTTTTAACGGTG
** *
66449084 TTTGTTGGGGAAGCGCCACTAAA
1 TTTG-TGGAAAAGCGCCGCTAAA
66449107 AGCCATGACT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 11 0.19
43 46 0.78
44 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (42 bp):
TTTGTGGAAAAGCGCCGCTAAAGTCATGGCTTTTTAACGGTG
Found at i:66449120 original size:43 final size:43
Alignment explanation
Indices: 66449016--66449120 Score: 158
Period size: 43 Copynumber: 2.4 Consensus size: 43
66449006 AAAAGCGCTG
*
66449016 CTAAAAGTCATGGCTTTTAACGGTGTTTGTTGGGGAAGCGCCG
1 CTAAAAGTCATGGCTTTTAACGGTGTTTGTTGGGGAAGCGCCA
*
66449059 CT-AAAGTCATGGCTTTTTAATGGTGTTTGTTGGGGAAGCGCCA
1 CTAAAAGTCATGGC-TTTTAACGGTGTTTGTTGGGGAAGCGCCA
* *
66449102 CTAAAAGCCATGACTTTTA
1 CTAAAAGTCATGGCTTTTA
66449121 GCGGCGCTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
42 11 0.20
43 36 0.64
44 9 0.16
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (43 bp):
CTAAAAGTCATGGCTTTTAACGGTGTTTGTTGGGGAAGCGCCA
Found at i:66455026 original size:9 final size:9
Alignment explanation
Indices: 66455012--66455375 Score: 437
Period size: 9 Copynumber: 40.7 Consensus size: 9
66455002 TAACTCTAAT
66455012 TAAGTTATG
1 TAAGTTATG
66455021 TAAGTTATG
1 TAAGTTATG
* * *
66455030 ATATGATATA
1 -TAAGTTATG
* *
66455040 T-ATTTAAG
1 TAAGTTATG
*
66455048 T-A-TTATA
1 TAAGTTATG
66455055 TAAGTTATG
1 TAAGTTATG
*
66455064 TAAATTATG
1 TAAGTTATG
*
66455073 TAAGTTAAG
1 TAAGTTATG
66455082 TAAGTTATG
1 TAAGTTATG
*
66455091 TGAGTTATG
1 TAAGTTATG
*
66455100 TGAGTTATG
1 TAAGTTATG
*
66455109 TGAGTTATG
1 TAAGTTATG
*
66455118 CAAGTTATG
1 TAAGTTATG
*
66455127 TAAGTTATA
1 TAAGTTATG
66455136 TAAGTTATG
1 TAAGTTATG
66455145 TAAGTTATG
1 TAAGTTATG
*
66455154 TGAGTTATG
1 TAAGTTATG
66455163 TAAGTTATG
1 TAAGTTATG
*
66455172 TAAGTTATA
1 TAAGTTATG
66455181 TAAGTTATG
1 TAAGTTATG
*
66455190 TAAGTAATG
1 TAAGTTATG
*
66455199 TGAGTTATG
1 TAAGTTATG
*
66455208 TGAGTTATG
1 TAAGTTATG
*
66455217 TGAGTTATG
1 TAAGTTATG
*
66455226 TGAGTTATG
1 TAAGTTATG
*
66455235 TGAGTTATG
1 TAAGTTATG
66455244 TAAGTTATG
1 TAAGTTATG
66455253 TAAGTTATG
1 TAAGTTATG
* *
66455262 TGAGATATG
1 TAAGTTATG
*
66455271 TGAGTTATG
1 TAAGTTATG
*
66455280 TGAGTTATG
1 TAAGTTATG
*
66455289 TGAGTTATG
1 TAAGTTATG
*
66455298 TGAGTTATG
1 TAAGTTATG
66455307 TAAGTTATG
1 TAAGTTATG
66455316 TAAGTTATG
1 TAAGTTATG
66455325 TAAGTTATG
1 TAAGTTATG
*
66455334 TAAGTTATA
1 TAAGTTATG
66455343 TAAGTTATG
1 TAAGTTATG
66455352 TAAGTTATG
1 TAAGTTATG
*
66455361 TGAGTTATG
1 TAAGTTATG
66455370 TAAGTT
1 TAAGTT
66455376 CAAGTATATA
Statistics
Matches: 315, Mismatches: 37, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
7 4 0.01
8 5 0.02
9 300 0.95
10 6 0.02
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:66460354 original size:29 final size:28
Alignment explanation
Indices: 66460321--66460387 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 28
66460311 ATCACATGGA
*
66460321 AAAAAATTATTTTAATTAAATAATATTT
1 AAAAAATTATATTAATTAAATAATATTT
* *
66460349 ATAAAAATAATATTAATTTAATAATATTT
1 A-AAAAATTATATTAATTAAATAATATTT
66460378 AAATAAATTA
1 AAA-AAATTA
66460388 ATCCAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (28 bp):
AAAAAATTATATTAATTAAATAATATTT
Found at i:66460434 original size:23 final size:22
Alignment explanation
Indices: 66460381--66460508 Score: 77
Period size: 22 Copynumber: 6.2 Consensus size: 22
66460371 AATATTTAAA
66460381 TAAATTAATCCAAATTATATTAT
1 TAAA-TAATCCAAATTATATTAT
* *
66460404 TAATTAATCCAAATTGTATTACT
1 TAAATAATCCAAATTATATTA-T
*
66460427 TAAATAAT----ATT-TA--AA
1 TAAATAATCCAAATTATATTAT
66460442 TAAATTAATCCAAATTATATTAAT
1 TAAA-TAATCCAAATTATATT-AT
66460466 TAAATAAT---AATTA-A--A-
1 TAAATAATCCAAATTATATTAT
66460481 TAAATTAATCCAAATTATATTAAT
1 TAAA-TAATCCAAATTATATT-AT
66460505 TAAA
1 TAAA
66460509 ATAAGATTGA
Statistics
Matches: 81, Mismatches: 5, Indels: 37
0.66 0.04 0.30
Matches are distributed among these distances:
15 8 0.10
16 10 0.12
18 2 0.02
19 9 0.11
20 9 0.11
21 2 0.02
22 16 0.20
23 16 0.20
24 9 0.11
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.41
Consensus pattern (22 bp):
TAAATAATCCAAATTATATTAT
Found at i:66460450 original size:39 final size:39
Alignment explanation
Indices: 66460405--66460508 Score: 181
Period size: 39 Copynumber: 2.7 Consensus size: 39
66460395 TTATATTATT
* * *
66460405 AATTAATCCAAATTGTATTACTTAAATAATATTTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
66460444 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
66460483 AATTAATCCAAATTATATTAATTAAA
1 AATTAATCCAAATTATATTAATTAAA
66460509 ATAAGATTGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (39 bp):
AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
Found at i:66460468 original size:19 final size:19
Alignment explanation
Indices: 66460383--66460507 Score: 94
Period size: 19 Copynumber: 6.3 Consensus size: 19
66460373 TATTTAAATA
66460383 AATTAATCCAAATTATATTATT
1 AATTAATCCAAA-T-TA-TATT
*
66460405 AATTAATCCAAATTGTATT
1 AATTAATCCAAATTATATT
* * *
66460424 ACTTAAAT--AATATTTAAATA
1 AATT-AATCCAA-A-TTATATT
66460444 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* * *
66460463 AATTAAAT-AATAATTAAATA
1 AATT-AATCCA-AATTATATT
66460483 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
66460502 AATTAA
1 AATTAA
66460508 AATAAGATTG
Statistics
Matches: 81, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
18 2 0.02
19 37 0.46
20 27 0.33
21 3 0.04
22 12 0.15
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.41
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:66460510 original size:15 final size:14
Alignment explanation
Indices: 66460324--66460508 Score: 64
Period size: 15 Copynumber: 13.2 Consensus size: 14
66460314 ACATGGAAAA
*
66460324 AAATTATTTTAATT
1 AAATTATATTAATT
* * *
66460338 AAATAATATTTATAA
1 AAATTATATTAAT-T
*
66460353 AAATAATATTAATT
1 AAATTATATTAATT
* * *
66460367 TAATAATATTTAAAT
1 AAATTATA-TTAATT
*
66460382 AAATTA-ATCCAAATT
1 AAATTATAT--TAATT
* *
66460397 ATATTATTAATTAATCC
1 AAATTA-T-ATTAAT-T
* *
66460414 AAATTGTATTACTT
1 AAATTATATTAATT
*
66460428 AAA-TA-A-TATTT
1 AAATTATATTAATT
* *
66460439 AAA-TAAATTAATCC
1 AAATTATATTAAT-T
66460453 AAATTATATTAATT
1 AAATTATATTAATT
66460467 AAA-TA-A-TAATT
1 AAATTATATTAATT
* *
66460478 AAA-TAAATTAATCC
1 AAATTATATTAAT-T
66460492 AAATTATATTAATT
1 AAATTATATTAATT
66460506 AAA
1 AAA
66460509 ATAAGATTGA
Statistics
Matches: 127, Mismatches: 28, Indels: 32
0.68 0.15 0.17
Matches are distributed among these distances:
11 19 0.15
12 4 0.03
13 11 0.09
14 33 0.26
15 50 0.39
16 4 0.03
17 4 0.03
18 2 0.02
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (14 bp):
AAATTATATTAATT
Found at i:66464355 original size:74 final size:74
Alignment explanation
Indices: 66464219--66464379 Score: 170
Period size: 75 Copynumber: 2.2 Consensus size: 74
66464209 ATTTCACATC
* *
66464219 TTTTGTGGCGTTTATAAAAGCGCCACTAATAAAAGGTTATAAAACGATGACGTTTTGAAATCT-C
1 TTTTGTGGCGTTTTTAAAAGCGCCACTAATAAAAGGTTATAAAACGACGACGTTTTGAAATCTAC
*
66464283 T-TTAGATG
66 TAATAGATG
** * * *
66464291 TTTTGTGGCGTTTTTCCAAGAAGCGCCACTAATAACTTGG-TA-ATAACGACGCCGTTTTGTAAT
1 TTTTGTGGCGTTTTT--AA-AAGCGCCACTAATAA-AAGGTTATAAAACGACGACGTTTTGAAAT
66464354 CTACTAATAGATG
62 CTACTAATAGATG
*
66464367 -TTTGTGGCATTTT
1 TTTTGTGGCGTTTT
66464380 CTAGTAAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
72 14 0.19
74 21 0.28
75 31 0.42
76 8 0.11
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (74 bp):
TTTTGTGGCGTTTTTAAAAGCGCCACTAATAAAAGGTTATAAAACGACGACGTTTTGAAATCTAC
TAATAGATG
Found at i:66465058 original size:21 final size:21
Alignment explanation
Indices: 66465034--66465075 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66465024 CATTTTATAA
66465034 TTTA-AGGTCTAGTGATTTAGG
1 TTTATAGGTCTA-TGATTTAGG
* *
66465055 TTTATAGTTTTATGATTTAGG
1 TTTATAGGTCTATGATTTAGG
66465076 AATCTATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (21 bp):
TTTATAGGTCTATGATTTAGG
Found at i:66465142 original size:14 final size:14
Alignment explanation
Indices: 66465110--66465184 Score: 53
Period size: 14 Copynumber: 5.3 Consensus size: 14
66465100 TTTAGTATTG
* *
66465110 TTTATAGTTTAGGGT
1 TTTATGGTTTA-GGA
66465125 TTTATGGTTTAGGA
1 TTTATGGTTTAGGA
* **
66465139 TTTAAGGTTTAATA
1 TTTATGGTTTAGGA
*
66465153 TTTAGGGTTTAAGG-
1 TTTATGGTTT-AGGA
* *
66465167 TTTATAGTTTATGA
1 TTTATGGTTTAGGA
66465181 TTTA
1 TTTA
66465185 CAACTATAGA
Statistics
Matches: 47, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
13 2 0.04
14 34 0.72
15 11 0.23
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (14 bp):
TTTATGGTTTAGGA
Found at i:66465156 original size:21 final size:21
Alignment explanation
Indices: 66465125--66465184 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
66465115 AGTTTAGGGT
*
66465125 TTTATGGTTTAGGATTTAAGG
1 TTTATAGTTTAGGATTTAAGG
*
66465146 TTTAATA-TTTAGGGTTTAAGG
1 TTT-ATAGTTTAGGATTTAAGG
*
66465167 TTTATAGTTTATGATTTA
1 TTTATAGTTTAGGATTTA
66465185 CAACTATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.09
21 28 0.85
22 2 0.06
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.52
Consensus pattern (21 bp):
TTTATAGTTTAGGATTTAAGG
Found at i:66477025 original size:20 final size:21
Alignment explanation
Indices: 66476995--66477039 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
66476985 CAGGGGAAGG
66476995 AAAGAAAGAAAAAGAGAAAAT-
1 AAAGAAAG-AAAAGAGAAAATC
*
66477016 AAAG-AAGAAAAGGGAAAATC
1 AAAGAAAGAAAAGAGAAAATC
66477036 AAAG
1 AAAG
66477040 GTGTTAAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.71, C:0.02, G:0.22, T:0.04
Consensus pattern (21 bp):
AAAGAAAGAAAAGAGAAAATC
Found at i:66478957 original size:46 final size:46
Alignment explanation
Indices: 66478904--66479078 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
66478894 TATTACAGGG
* * *
66478904 GAAATGTGTAAGACCATGGTTGAAAGATACTATGGTAGCCTAATAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTAAGAT
** *
66478950 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGTGTGAGAT
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTAAGAT
** * * * *
66478996 GAAATGAATAAGACCAAGGTTGAAAGATACCATGACAACATGACAGA-
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCT-A-AGAT
* * * *
66479043 -AAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66479079 TCATACCAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
46 104 0.97
48 3 0.03
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.22
Consensus pattern (46 bp):
GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTAAGAT
Found at i:66481720 original size:18 final size:18
Alignment explanation
Indices: 66481697--66481732 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
66481687 AAGGGAAAAT
66481697 AAAAAGGAAAAAAATAAA
1 AAAAAGGAAAAAAATAAA
* *
66481715 AAAAAGGAGAGAAATAAA
1 AAAAAGGAAAAAAATAAA
66481733 GAAACAAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.06
Consensus pattern (18 bp):
AAAAAGGAAAAAAATAAA
Found at i:66483789 original size:46 final size:46
Alignment explanation
Indices: 66483736--66483963 Score: 287
Period size: 46 Copynumber: 5.0 Consensus size: 46
66483726 AGTGTGCTCT
66483736 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
66483782 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
66483828 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
66483874 GTGACATGAAATGAATAAGACCATGGTTGAAAGATAGCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
66483920 ATGACA-GAAACTGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATGAAA-TGTGTAAGACCATGGTTGAAAGATACCATGGCA
66483964 TCATACCAAA
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
45 4 0.03
46 156 0.98
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:66492871 original size:12 final size:12
Alignment explanation
Indices: 66492850--66492879 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
66492840 GGAAAAGTGA
*
66492850 AGAGAGTTGTGG
1 AGAGATTTGTGG
66492862 AGAGATTTGTGG
1 AGAGATTTGTGG
66492874 AGAGAT
1 AGAGAT
66492880 AGGGGGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.43, T:0.27
Consensus pattern (12 bp):
AGAGATTTGTGG
Found at i:66498294 original size:9 final size:9
Alignment explanation
Indices: 66498280--66498642 Score: 453
Period size: 9 Copynumber: 40.7 Consensus size: 9
66498270 TAACTCTAAT
66498280 TAAGTTATG
1 TAAGTTATG
66498289 TAAGTTATG
1 TAAGTTATG
* * *
66498298 TATGATATA
1 TAAGTTATG
*
66498307 T-ATTTATG
1 TAAGTTATG
66498315 T-A-TTATG
1 TAAGTTATG
66498322 TAAGTTATG
1 TAAGTTATG
*
66498331 TAAATTATG
1 TAAGTTATG
66498340 TAAGTTATG
1 TAAGTTATG
66498349 TAAGTTATG
1 TAAGTTATG
*
66498358 TGAGTTATG
1 TAAGTTATG
*
66498367 TGAGTTATG
1 TAAGTTATG
*
66498376 TGAGTTATG
1 TAAGTTATG
*
66498385 CAAGTTATG
1 TAAGTTATG
*
66498394 TAAGTTATA
1 TAAGTTATG
66498403 TAAGTTATG
1 TAAGTTATG
66498412 TAAGTTATG
1 TAAGTTATG
*
66498421 TGAGTTATG
1 TAAGTTATG
66498430 TAAGTTATG
1 TAAGTTATG
*
66498439 TAAGTTATA
1 TAAGTTATG
66498448 TAAGTTATG
1 TAAGTTATG
*
66498457 TAAGTAATG
1 TAAGTTATG
*
66498466 TGAGTTATG
1 TAAGTTATG
*
66498475 TGAGTTATG
1 TAAGTTATG
*
66498484 TGAGTTATG
1 TAAGTTATG
*
66498493 TGAGTTATG
1 TAAGTTATG
* *
66498502 TGAGTTGTG
1 TAAGTTATG
*
66498511 TGAGTTATG
1 TAAGTTATG
66498520 TAAGTTATG
1 TAAGTTATG
66498529 TAAGTTATG
1 TAAGTTATG
* *
66498538 TGAGATATG
1 TAAGTTATG
*
66498547 TGAGTTATG
1 TAAGTTATG
*
66498556 TGAGTTATG
1 TAAGTTATG
*
66498565 TGAGTTATG
1 TAAGTTATG
*
66498574 TGAGTTATG
1 TAAGTTATG
66498583 TAAGTTATG
1 TAAGTTATG
66498592 TAAGTTATG
1 TAAGTTATG
*
66498601 TAAGTTATA
1 TAAGTTATG
66498610 TAAGTTATG
1 TAAGTTATG
66498619 TAAGTTATG
1 TAAGTTATG
*
66498628 TGAGTTATG
1 TAAGTTATG
66498637 TAAGTT
1 TAAGTT
66498643 CAAGTATATA
Statistics
Matches: 319, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
7 6 0.02
8 6 0.02
9 307 0.96
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:66505406 original size:37 final size:37
Alignment explanation
Indices: 66505356--66505471 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
66505346 TTATTACGAA
* * * *
66505356 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
66505393 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
66505430 GTCTTACCCGGACAAAATCCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
66505467 GTCTT
1 GTCTT
66505472 TAGAGCTCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:66505668 original size:47 final size:47
Alignment explanation
Indices: 66505590--66506212 Score: 818
Period size: 47 Copynumber: 12.7 Consensus size: 47
66505580 CCCTTCGGGA
* * * * * *
66505590 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66505637 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66505684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66505731 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
66505780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66505827 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66505874 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66505921 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66505970 CTTATCTCATATATGCA-TGTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
66506017 CTTATCACATATATACACTTTCACGTTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
66506064 CTTATCACATATATACACCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-CTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----GGC
66506129 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66506178 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
66506213 AGAATCCTAA
Statistics
Matches: 520, Mismatches: 29, Indels: 54
0.86 0.05 0.09
Matches are distributed among these distances:
46 2 0.00
47 348 0.67
48 4 0.01
49 107 0.21
51 1 0.00
52 1 0.00
53 2 0.00
56 8 0.02
57 7 0.01
58 8 0.02
61 2 0.00
62 1 0.00
63 2 0.00
65 15 0.03
66 3 0.01
67 9 0.02
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66505860 original size:143 final size:142
Alignment explanation
Indices: 66505590--66506212 Score: 858
Period size: 143 Copynumber: 4.2 Consensus size: 142
66505580 CCCTTCGGGA
* * * * * * * *
66505590 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
66505654 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66505719 CGGCCATTAGGC
131 CGGCCATTAGGC
66505731 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATA
66505795 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
66505860 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
66505874 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-TATATATAC
* * *
66505939 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-TGTTCACATCCATCAC
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCAC
66506003 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
* *
66506017 CTTATCACATATATACACTTTCACGTTCATCACATCAGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG------C-C-T-TAT-CA-
66506082 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
55 C-TAT-----ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
66506147 ACTTTCACATTCATCACATCGGCCATTAGGC
112 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66506178 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
66506213 AGAATCCTAA
Statistics
Matches: 436, Mismatches: 21, Indels: 30
0.90 0.04 0.06
Matches are distributed among these distances:
141 54 0.12
142 1 0.00
143 259 0.59
149 1 0.00
150 1 0.00
151 1 0.00
152 3 0.01
153 2 0.00
154 4 0.01
159 44 0.10
160 1 0.00
161 64 0.15
162 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:66505913 original size:190 final size:190
Alignment explanation
Indices: 66505590--66506212 Score: 917
Period size: 190 Copynumber: 3.2 Consensus size: 190
66505580 CCCTTCGGGA
* * * * * * *
66505590 CTTATCACATTTATACACT-TTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATACA-TGTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACA
66505654 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
*
66505719 CGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66505780 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACA
66505844 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66505909 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66505970 CTTATCTCATATATGCATGTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACATGTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
66506035 TTTCACGTTCATCACATCAGCCATTAGGCCTTATCACATATATACACCTTATCACATATATACAC
66 TTTCACATTCATCACATCGGCCATTAGG------------------CCTTATCACATATATACAC
66506100 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
113 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66506165 TCGGCCATTAGGC
178 TCGGCCATTAGGC
* *
66506178 CTTATCTCATATATGCATGTTCACATCCATCACAT
1 CTTATCACATATATACATGTTCACATCCATCACAT
66506213 AGAATCCTAA
Statistics
Matches: 400, Mismatches: 14, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
189 1 0.00
190 267 0.67
208 132 0.33
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACATGTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66506094 original size:65 final size:65
Alignment explanation
Indices: 66506016--66506156 Score: 239
Period size: 65 Copynumber: 2.2 Consensus size: 65
66506006 GGCCATTAGG
*
66506016 CCTTATCACATATATACACTTTCACGTTCATCACATCAGCCATTAGGCCTTATCACATATATACA
1 CCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACA
* *
66506081 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACA
66506146 CACTT-TCACAT
1 C-CTTATCACAT
66506157 TCATCACATC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
65 69 0.96
66 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (65 bp):
CCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACA
Found at i:66506105 original size:16 final size:18
Alignment explanation
Indices: 66506063--66506107 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
66506053 AGCCATTAGG
66506063 CCTTATCACATATATACA
1 CCTTATCACATATATACA
66506081 CCTTATCACATATATACA
1 CCTTATCACATATATACA
66506099 -CTT-TCACAT
1 CCTTATCACAT
66506108 TCATCACATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 6 0.22
17 3 0.11
18 18 0.67
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (18 bp):
CCTTATCACATATATACA
Found at i:66506160 original size:49 final size:49
Alignment explanation
Indices: 66506081--66506191 Score: 199
Period size: 49 Copynumber: 2.3 Consensus size: 49
66506071 CATATATACA
66506081 CCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
66506128 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
*
66506177 CCTTATCTCATATAT
1 CCTTATCACATATAT
66506192 GCATGTTCAC
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
47 9 0.15
49 52 0.85
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (49 bp):
CCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
Found at i:66509756 original size:24 final size:23
Alignment explanation
Indices: 66509720--66509765 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
66509710 CATGTTCCCC
66509720 TGCTTTAATTCAAGAAACTCTTTA
1 TGCTTTAATTCAAGAAA-TCTTTA
*
66509744 TGCTTCTAA-TCAATAAATCTTT
1 TGCTT-TAATTCAAGAAATCTTT
66509766 CACTGATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 12 0.60
25 3 0.15
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (23 bp):
TGCTTTAATTCAAGAAATCTTTA
Found at i:66513447 original size:27 final size:23
Alignment explanation
Indices: 66513389--66513447 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
66513379 TTAATAATAT
66513389 TTAAATAAATTAATCCAAATTATA
1 TTAAAT-AATTAATCCAAATTATA
* *
66513413 TT-ATTAATTAATCCAAATTGTA
1 TTAAATAATTAATCCAAATTATA
* *
66513435 TTAATTAAATAAT
1 TTAAATAATTAAT
66513448 ATTTAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.58
23 11 0.35
24 2 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (23 bp):
TTAAATAATTAATCCAAATTATA
Found at i:66513462 original size:20 final size:19
Alignment explanation
Indices: 66513437--66513501 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 19
66513427 AAATTGTATT
66513437 AATTAAATAATATTTAAATA
1 AATTAAATAATA-TTAAATA
* *
66513457 AATT-AATCCAA-ATTATATT
1 AATTAAAT--AATATTAAATA
66513476 AATTAAATAATAATTAAATA
1 AATTAAATAAT-ATTAAATA
66513496 AATTAA
1 AATTAA
66513502 TCCAAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.06
19 12 0.33
20 20 0.56
21 2 0.06
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTAAATAATATTAAATA
Found at i:66513465 original size:39 final size:39
Alignment explanation
Indices: 66513418--66513521 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
66513408 TTATATTATT
* *
66513418 AATTAATCCAAATTGTATTAATTAAATAATATTTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
66513457 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
66513496 AATTAATCCAAATTATATTAATTAAA
1 AATTAATCCAAATTATATTAATTAAA
66513522 ATAAGATTGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.54, C:0.06, G:0.01, T:0.39
Consensus pattern (39 bp):
AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
Found at i:66513491 original size:11 final size:12
Alignment explanation
Indices: 66513434--66513521 Score: 63
Period size: 11 Copynumber: 6.8 Consensus size: 12
66513424 TCCAAATTGT
66513434 ATTAATTAAATA
1 ATTAATTAAATA
*
66513446 A-TATTTAAATAA
1 ATTAATTAAAT-A
*
66513458 ATTAATCCAAATTA
1 ATTAAT-TAAA-TA
66513472 TATTAATTAAATA
1 -ATTAATTAAATA
66513485 A-TAATTAAATAA
1 ATTAATTAAAT-A
*
66513497 ATTAATCCAAATTA
1 ATTAAT-TAAA-TA
66513511 TATTAATTAAA
1 -ATTAATTAAA
66513522 ATAAGATTGA
Statistics
Matches: 60, Mismatches: 6, Indels: 18
0.71 0.07 0.21
Matches are distributed among these distances:
11 17 0.28
12 6 0.10
13 9 0.15
14 14 0.23
15 14 0.23
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTAATTAAATA
Found at i:66513518 original size:19 final size:19
Alignment explanation
Indices: 66513396--66513520 Score: 103
Period size: 19 Copynumber: 6.3 Consensus size: 19
66513386 TATTTAAATA
66513396 AATTAATCCAAATTATATTATT
1 AATTAATCCAAA-T-TA-TATT
*
66513418 AATTAATCCAAATTGTATT
1 AATTAATCCAAATTATATT
* *
66513437 AATTAAAT--AATATTTAAATA
1 AATT-AATCCAA-A-TTATATT
66513457 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* * *
66513476 AATTAAAT-AATAATTAAATA
1 AATT-AATCCA-AATTATATT
66513496 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
66513515 AATTAA
1 AATTAA
66513521 AATAAGATTG
Statistics
Matches: 83, Mismatches: 12, Indels: 19
0.73 0.11 0.17
Matches are distributed among these distances:
18 2 0.02
19 38 0.46
20 28 0.34
21 3 0.04
22 12 0.14
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.41
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:66513523 original size:15 final size:14
Alignment explanation
Indices: 66513360--66513521 Score: 72
Period size: 15 Copynumber: 11.6 Consensus size: 14
66513350 AAAAATTGTT
*
66513360 TTAATTAAATAATA
1 TTAATTAAATTATA
* *
66513374 TTAATTTAATAATA
1 TTAATTAAATTATA
*
66513388 TTTAAATAAATTA-A
1 -TTAATTAAATTATA
* *
66513402 TCCAAATTATATTATTAA
1 T--TAATTAAATTA-T-A
* *
66513420 TTAATCCAAATTGTA
1 TTAAT-TAAATTATA
66513435 TTAATTAAA-TA-A
1 TTAATTAAATTATA
* *
66513447 -TATTTAAA-TAAA
1 TTAATTAAATTATA
*
66513459 TTAATCCAAATTATA
1 TTAAT-TAAATTATA
66513474 TTAATTAAA-TA-A
1 TTAATTAAATTATA
*
66513486 -TAATTAAA-TAAA
1 TTAATTAAATTATA
*
66513498 TTAATCCAAATTATA
1 TTAAT-TAAATTATA
66513513 TTAATTAAA
1 TTAATTAAA
66513522 ATAAGATTGA
Statistics
Matches: 112, Mismatches: 21, Indels: 30
0.69 0.13 0.18
Matches are distributed among these distances:
11 19 0.17
12 4 0.04
13 11 0.10
14 29 0.26
15 39 0.35
16 4 0.04
17 4 0.04
18 2 0.02
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (14 bp):
TTAATTAAATTATA
Found at i:66516177 original size:40 final size:40
Alignment explanation
Indices: 66516105--66516268 Score: 231
Period size: 40 Copynumber: 4.1 Consensus size: 40
66516095 AACCCAAGTA
* * ** *
66516105 CCTTCGAGATTTAG-CCGGATATAACAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66516144 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
66516184 CCTCCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66516224 CCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66516264 CCTTC
1 CCTTC
66516269 AGATCTTAGT
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 12 0.11
40 100 0.89
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66521079 original size:40 final size:40
Alignment explanation
Indices: 66521024--66521325 Score: 446
Period size: 40 Copynumber: 7.6 Consensus size: 40
66521014 TACTCGGATG
*
66521024 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66521064 ATATCCGGGCTAAGTCCCGAAGGCCTTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66521104 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
66521144 ATATCTGGGCTAAGTCCCGAAGGCCTTTGCGCAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66521184 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66521224 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
66521264 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
66521304 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
66521326 TACTTGGGCT
Statistics
Matches: 238, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 14 0.06
40 222 0.93
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66527379 original size:40 final size:40
Alignment explanation
Indices: 66527305--66527510 Score: 315
Period size: 40 Copynumber: 5.2 Consensus size: 40
66527295 AACCCAAGTA
* ** *
66527305 CCTTCGGGATTTAG-CCGGATATAACAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66527344 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
66527384 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
66527424 CCTTCGGGACTCAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66527464 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66527504 CCTTCGG
1 CCTTCGG
66527511 ATCTTAGTCC
Statistics
Matches: 154, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.08
40 141 0.92
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66531828 original size:188 final size:186
Alignment explanation
Indices: 66531571--66531922 Score: 449
Period size: 188 Copynumber: 1.9 Consensus size: 186
66531561 GCAGTTTCTA
* * * ** * *
66531571 CAATCTATTAATAGATTTTTGTGGCGTTTCTAGGGAAAATGCCGGTATTTCACATCTTTTGTGGC
1 CAATCTACTAATAGATGTTTGTGGCGTTTCTAGGGAAAATGCCAGTAAATCACACCTTTTGCGGC
* * *
66531636 GTTTATAAAAGCGCCACTAATAA-AAGGCTATAAAACGATGACGTTTTGA-AATCTCTT-TAGAT
66 GTTTATAAAAGCGCCACTAATAAGAAGGATAT-AAACAACGACGTTTT-ACAATCTCTTATAGAT
**
66531698 GTTTTGTGGTGTTTTTCCAAGAAGCGCCACTAATAACTTGGTAATAACGATGCTGTTTTG
129 GTTTTGTGGCATTTTT--AAGAAGCGCCACTAATAACTTGGTAATAACGATGCTGTTTTG
* * *
66531758 CAATCTACTAATAGATGTTTGTGGCATTTTCTAGTGAAAATGCTAGTAAATCACACCTTTTGCGG
1 CAATCTACTAATAGATGTTTGTGGC-GTTTCTAGGGAAAATGCCAGTAAATCACACCTTTTGCGG
* * * *
66531823 CGTTTATAGAAGCGCCACTAATAAGAAGGATGTAAACAACGTCGTTTTACATTCTCTTAATAGAT
65 CGTTTATAAAAGCGCCACTAATAAGAAGGATATAAACAACGACGTTTTACAATCTCTT-ATAGAT
*
66531888 GTTTTGTGGCATTTTTTAGAAGCGCCACTAATAAC
129 GTTTTGTGGCATTTTTAAGAAGCGCCACTAATAAC
66531923 AAAGCTTCAA
Statistics
Matches: 140, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
187 24 0.17
188 91 0.65
189 6 0.04
190 19 0.14
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (186 bp):
CAATCTACTAATAGATGTTTGTGGCGTTTCTAGGGAAAATGCCAGTAAATCACACCTTTTGCGGC
GTTTATAAAAGCGCCACTAATAAGAAGGATATAAACAACGACGTTTTACAATCTCTTATAGATGT
TTTGTGGCATTTTTAAGAAGCGCCACTAATAACTTGGTAATAACGATGCTGTTTTG
Found at i:66532422 original size:21 final size:21
Alignment explanation
Indices: 66532396--66532449 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
66532386 AGTTTAAGGT
*
66532396 TTTATGGTTTTGGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
66532417 TTTATGGTTTAAGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
66532438 TTTATAGTTTTA
1 TTTATGGTTTTA
66532450 AGACGTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (21 bp):
TTTATGGTTTTAGATTTAGGG
Found at i:66532487 original size:21 final size:21
Alignment explanation
Indices: 66532463--66532504 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66532453 CGTTTTATAA
66532463 TTTA-AGGTCTAGTGATTTAGG
1 TTTACAGGTCTA-TGATTTAGG
* *
66532484 TTTACAGTTTTATGATTTAGG
1 TTTACAGGTCTATGATTTAGG
66532505 AATCTATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.48
Consensus pattern (21 bp):
TTTACAGGTCTATGATTTAGG
Found at i:66532606 original size:21 final size:21
Alignment explanation
Indices: 66532554--66532613 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
66532544 AGTTTAGGGT
* *
66532554 TTTATGGTTTAGGATTCAAGG
1 TTTATAGTTTAGGATTTAAGG
66532575 TTTAATA-TTTAGGATTTAAGG
1 TTT-ATAGTTTAGGATTTAAGG
*
66532596 TTTATAGTTTATGATTTA
1 TTTATAGTTTAGGATTTA
66532614 CAACTATAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.09
21 29 0.85
22 2 0.06
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50
Consensus pattern (21 bp):
TTTATAGTTTAGGATTTAAGG
Found at i:66534591 original size:42 final size:42
Alignment explanation
Indices: 66534514--66534593 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
66534504 GTTCTAAGCC
* *
66534514 ATGTAGCACACACGGCTAAGACACATGCCCATGTCTCTACCT
1 ATGTAGCACACACGGCTAAGACACACGCACATGTCTCTACCT
* *
66534556 ATGTAGCACACACGGCTAGGACACACGCACGTGTCTCT
1 ATGTAGCACACACGGCTAAGACACACGCACATGTCTCT
66534594 GCCCATGTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.20
Consensus pattern (42 bp):
ATGTAGCACACACGGCTAAGACACACGCACATGTCTCTACCT
Found at i:66549352 original size:46 final size:46
Alignment explanation
Indices: 66549285--66549512 Score: 280
Period size: 46 Copynumber: 5.0 Consensus size: 46
66549275 AGTGTGCTCT
*
66549285 CTGATATGAAATGTGTGAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66549331 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGA-
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA-AC
**
66549377 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
66549423 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATAGAAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
66549469 ATAACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66549513 TCATGTCAAA
Statistics
Matches: 161, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
47 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:66552170 original size:22 final size:19
Alignment explanation
Indices: 66552129--66552173 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 19
66552119 ATAAAAAAGG
*
66552129 GAAAATAAAAAGGAAAAAA
1 GAAAAAAAAAAGGAAAAAA
66552148 GAAAAAAAAGAAGAGAAATAAA
1 GAAAAAAAA-AAG-GAAA-AAA
66552170 GAAA
1 GAAA
66552174 CAAAGCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 4 0.18
22 7 0.32
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (19 bp):
GAAAAAAAAAAGGAAAAAA
Found at i:66554224 original size:46 final size:46
Alignment explanation
Indices: 66554172--66554399 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
66554162 AGTGTGCTCT
*
66554172 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATAGCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
66554218 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
66554264 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
66554310 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
66554356 ATAACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66554400 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 165 0.99
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:66591673 original size:40 final size:40
Alignment explanation
Indices: 66591611--66591867 Score: 358
Period size: 40 Copynumber: 6.5 Consensus size: 40
66591601 AAGCCAAGTA
* * * *
66591611 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
66591650 CCTTCGGGACATAGCCCGGATATAGTAACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66591690 CCTTCGGGACATAGCCCGGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66591730 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66591770 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66591810 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66591850 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
66591868 ATTATCATCC
Statistics
Matches: 203, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
39 13 0.06
40 190 0.94
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66599912 original size:40 final size:40
Alignment explanation
Indices: 66599854--66600071 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
66599844 AAGCCAAGTA
* * * *
66599854 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
66599893 CCTTCAGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
66599933 CCTTCGGGACTTAGCTCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66599973 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
66600013 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66600053 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66600072 TTATCATCCA
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 12 0.08
40 148 0.93
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:66603879 original size:23 final size:23
Alignment explanation
Indices: 66603849--66603895 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
66603839 AATTCCAATG
66603849 GATGCTTAAGTAGTACACTCGAA
1 GATGCTTAAGTAGTACACTCGAA
66603872 GATGCTTAAGTAGTACACTCGAA
1 GATGCTTAAGTAGTACACTCGAA
66603895 G
1 G
66603896 CATACGATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (23 bp):
GATGCTTAAGTAGTACACTCGAA
Found at i:66605229 original size:132 final size:132
Alignment explanation
Indices: 66604826--66605342 Score: 515
Period size: 132 Copynumber: 3.9 Consensus size: 132
66604816 TAGAAAACAC
* * * *
66604826 GAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAATGGGAGATTGCAACCCAGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * * * * *
66604891 GGGCACTATTCCCCGAATTGCCGAACACCGAACAT-T-TCTTTCGTTTTAAAGGGTTTTTAGAAA
66 GGGCACGATTCCGCGAATTGCCAAACATC-AA-ATCTCACCTTCGTTTTAAAGGATTTTTA-AAA
*
66604954 -ACGT
128 GACAT
* * * * * * *
66604958 GAGTGAAATTCCGAAGGAATCTTCGATTGTTTTGAACAAATGAAAAAGTGCAACCCCGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
** * * * * *
66605023 GGATACGATT-CTCGTATTGCCAAACATCGAA-CATCACCTTTGTTTTAAAGGATTTTTAGAAGA
66 GGGCACGATTCCGCGAATTGCCAAACATCAAATC-TCACCTTCGTTTTAAAGGATTTTTAAAAGA
66605086 CAT
130 CAT
** * *
66605089 GAGTGAAATTTTGAAGGGATATTCGATTATCTTGAACAAACGAGAAATTGCAACCCAGCACGTTA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * ** *
66605154 GGGCATGATTCCGTGAATTGCCAAATATCAAATCTCACCTTCGCCTTAAAGAATTTTTAAAAGAC
66 GGGCACGATTCCGCGAATTGCCAAACATCAAATCTCACCTTCGTTTTAAAGGATTTTTAAAAGAC
66605219 AT
131 AT
* ** * * *
66605221 GGGTGAAATTTTGAAGGGATATTCGATCATTTTGAGA-AAACGAGAAATTGCAACCCAACACGTT
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGA-ACAAACGAGAAATTGCAACCCAGCACGAT
* * *** *
66605285 AGGGCACAATTCCGCGAATTGCCAAATATCAAATCTTGTCTTCGTTTTAAAGAATTTT
65 AGGGCACGATTCCGCGAATTGCCAAACATCAAATCTCACCTTCGTTTTAAAGGATTTT
66605343 GAAATGAATA
Statistics
Matches: 319, Mismatches: 59, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
129 1 0.00
130 4 0.01
131 97 0.30
132 215 0.67
133 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (132 bp):
GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
GGGCACGATTCCGCGAATTGCCAAACATCAAATCTCACCTTCGTTTTAAAGGATTTTTAAAAGAC
AT
Found at i:66605704 original size:14 final size:14
Alignment explanation
Indices: 66605685--66605714 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
66605675 AACACGACAC
66605685 AAAAATAATGGACT
1 AAAAATAATGGACT
*
66605699 AAAAATGATGGACT
1 AAAAATAATGGACT
66605713 AA
1 AA
66605715 CAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (14 bp):
AAAAATAATGGACT
Found at i:66606246 original size:21 final size:20
Alignment explanation
Indices: 66606216--66606255 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
66606206 GATTTAAAAG
*
66606216 ATATATTATAAGAATTATGTA
1 ATATAATATAAGAA-TATGTA
*
66606237 ATATAATATAGGAATATGT
1 ATATAATATAAGAATATGT
66606256 TTAAAGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.40
Consensus pattern (20 bp):
ATATAATATAAGAATATGTA
Found at i:66609531 original size:20 final size:20
Alignment explanation
Indices: 66609498--66609541 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
66609488 AGCACACGTA
* *
66609498 TTCATAAAAATTTAGAATTT
1 TTCATAAAAATTTACAACTT
* *
66609518 TTCATCAAACTTTACAACTT
1 TTCATAAAAATTTACAACTT
66609538 TTCA
1 TTCA
66609542 GTTTCATCCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (20 bp):
TTCATAAAAATTTACAACTT
Found at i:66611141 original size:7 final size:8
Alignment explanation
Indices: 66611117--66611156 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
66611107 AAAATTTTAT
66611117 TGTAAAAG
1 TGTAAAAG
66611125 TGTAAAAG
1 TGTAAAAG
66611133 TGT-AAAG
1 TGTAAAAG
66611140 TGTAAAAG
1 TGTAAAAG
66611148 TGTAAAAG
1 TGTAAAAG
66611156 T
1 T
66611157 TGCCTGCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 7 0.23
8 24 0.77
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (8 bp):
TGTAAAAG
Found at i:66611141 original size:15 final size:15
Alignment explanation
Indices: 66611121--66611153 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
66611111 TTTTATTGTA
66611121 AAAGTGTAAAAGTGT
1 AAAGTGTAAAAGTGT
66611136 AAAGTGTAAAAGTGT
1 AAAGTGTAAAAGTGT
66611151 AAA
1 AAA
66611154 AGTTGCCTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (15 bp):
AAAGTGTAAAAGTGT
Found at i:66612529 original size:34 final size:34
Alignment explanation
Indices: 66612491--66612559 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
66612481 CCAAGTATAT
66612491 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
1 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
* *
66612525 GAATATGAAGTTTTTGTTGGTATTTGGTTCTAAG
1 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
66612559 G
1 G
66612560 TATAAGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.45
Consensus pattern (34 bp):
GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
Found at i:66617529 original size:68 final size:69
Alignment explanation
Indices: 66617409--66617549 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 69
66617399 CTTAATTTTC
*
66617409 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAATTGTTTGATATAGCATTATTGAGTTGATTG
1 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
66617474 CATG
66 CATG
* *
66617478 ATAG-ATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGTTATATCATTATTGAGTTGATTG
1 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
66617542 CATG
66 CATG
66617546 ATAG
1 ATAG
66617550 CTAATTTAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
68 65 0.94
69 4 0.06
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (69 bp):
ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
CATG
Found at i:66636292 original size:45 final size:45
Alignment explanation
Indices: 66636150--66636364 Score: 181
Period size: 45 Copynumber: 4.9 Consensus size: 45
66636140 ATGTCATACA
* * * * * *
66636150 ATGCCAATGTCCCAGACCTGGCCTTACATGATATCTC--ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* * * * * *
66636193 ATGCCACTGTCCCAGACAGGGTCTTGCTCG-AATC-TA-ATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* * * *
66636234 ATGTCAATGTCCCAGACATGGTCTTACATGTAACCACATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* *
66636279 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACGCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* ** * *
66636324 ATGCTAATGTCCCAGATGTGGTCTTACTCGAAAATACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATAT
66636365 CAAAATCCTA
Statistics
Matches: 137, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
41 26 0.19
42 9 0.07
43 24 0.18
44 3 0.02
45 75 0.55
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAAACACATATATCG
Found at i:66636302 original size:86 final size:84
Alignment explanation
Indices: 66636145--66636303 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 84
66636135 CACATATGTC
* * *
66636145 ATACAATGCCAATGTCCCAGACCTGGCCTTACATGATATCTCATATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAATGTCCCAGACATGGCCTTACATGATACCACATATCGATGCCACTGTCCCAGAC
66636210 AGGGTCTTGCTCGAATCTA
66 AGGGTCTTGCTCGAATCTA
* * *
66636229 ATACGATGTCAATGTCCCAGACATGGTCTTACATG-TAACCACATATATCGATGCCAAC-GTCCC
1 ATACAATGCCAATGTCCCAGACATGGCCTTACATGAT-ACCAC--ATATCGATGCC-ACTGTCCC
*
66636292 AGACATGGTCTT
62 AGACAGGGTCTT
66636304 ACACGAAAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 1 0.02
84 34 0.53
86 27 0.42
87 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (84 bp):
ATACAATGCCAATGTCCCAGACATGGCCTTACATGATACCACATATCGATGCCACTGTCCCAGAC
AGGGTCTTGCTCGAATCTA
Found at i:66643234 original size:40 final size:40
Alignment explanation
Indices: 66643167--66643343 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
66643157 ACCCAAGTAT
*
66643167 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
66643206 CTTCTGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
66643246 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
66643286 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
66643326 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
66643344 TTATCATTCG
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 103 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:66651076 original size:25 final size:25
Alignment explanation
Indices: 66651040--66651095 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
66651030 TTTCTCCTAA
66651040 ATTTTAATTTTATTCAATTATCTAAT
1 ATTTTAATTTTATTCAATTAT-TAAT
* *
66651066 TTTTTAA-TTTATTGAATTATTAAT
1 ATTTTAATTTTATTCAATTATTAAT
66651090 ATTTTA
1 ATTTTA
66651096 TATTAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 9 0.33
25 12 0.44
26 6 0.22
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTTTAATTTTATTCAATTATTAAT
Found at i:66659608 original size:68 final size:65
Alignment explanation
Indices: 66659533--66659681 Score: 169
Period size: 64 Copynumber: 2.2 Consensus size: 65
66659523 CATCATGTGT
*
66659533 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT-GT-ACAC-C
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCAT--GTGATACTAAGTGGTAACACAC
66659595 ATGTAG
60 ATGTAG
** *
66659601 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTTACTAAGTGGTAAACACACATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGTGATACTAAGTGGT-AACACACATGTA
66659666 G
65 G
66659667 ACAAGCAGAGCTACG
1 ACAAG-AGAGCTACG
66659682 TGAGATAACG
Statistics
Matches: 72, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
62 10 0.14
63 2 0.03
64 17 0.24
65 7 0.10
66 14 0.19
67 9 0.12
68 13 0.18
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGTGATACTAAGTGGTAACACACATGTAG
Found at i:66659638 original size:64 final size:66
Alignment explanation
Indices: 66659557--66659681 Score: 177
Period size: 64 Copynumber: 1.9 Consensus size: 66
66659547 AGACATTATG
*
66659557 ATGTAGCTAGGTCGCATGGGTGATACTATGT-GT-ACAC-CATGTAGACAAG-AGAGCTACGGGA
1 ATGTAGCTAGGTCGCAT--GTGATACTAAGTGGTAACACACATGTAGACAAGCAGAGCTACGGGA
66659618 TAT
64 TAT
*
66659621 ATGTAGCTAGGTCGCATGTGTTACTAAGTGGTAAACACACATGTAGACAAGCAGAGCTACG
1 ATGTAGCTAGGTCGCATGTGATACTAAGTGGT-AACACACATGTAGACAAGCAGAGCTACG
66659682 TGAGATAACG
Statistics
Matches: 54, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
62 10 0.19
63 2 0.04
64 17 0.31
65 4 0.07
66 12 0.22
67 9 0.17
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGTGATACTAAGTGGTAACACACATGTAGACAAGCAGAGCTACGGGATA
T
Found at i:66664972 original size:49 final size:47
Alignment explanation
Indices: 66664726--66665044 Score: 566
Period size: 47 Copynumber: 6.7 Consensus size: 47
66664716 ATGATAGTAT
66664726 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66664773 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
66664820 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
66664867 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
66664914 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
66664963 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
66665012 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
66665045 CCCGAAGGGC
Statistics
Matches: 266, Mismatches: 3, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
47 172 0.65
49 90 0.34
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:66665230 original size:36 final size:37
Alignment explanation
Indices: 66665162--66665239 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
66665152 CCGAGCTCTA
* * *
66665162 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
66665199 AAGACCCGATAACT-TGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66665235 AAGAC
1 AAGAC
66665240 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 24 0.65
37 13 0.35
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66667890 original size:18 final size:19
Alignment explanation
Indices: 66667857--66667892 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
66667847 TTAAATTTAG
*
66667857 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
66667876 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
66667893 GTTCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:66670154 original size:27 final size:27
Alignment explanation
Indices: 66670114--66670225 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
66670104 AGGAAGCATC
*
66670114 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
66670141 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
66670168 CTGGTGGCTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
66670196 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
66670222 CTGG
1 CTGG
66670226 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:66670220 original size:54 final size:54
Alignment explanation
Indices: 66670114--66670225 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
66670104 AGGAAGCATC
* *
66670114 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
66670168 CTGGTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
66670222 CTGG
1 CTGG
66670226 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:66714509 original size:40 final size:40
Alignment explanation
Indices: 66714456--66714647 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
66714446 TATTACCACA
* * * * *
66714456 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
66714496 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
66714536 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
66714576 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
66714616 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
66714648 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:66723955 original size:79 final size:82
Alignment explanation
Indices: 66723844--66724028 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
66723834 GCTACTCGTT
* *
66723844 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
66723907 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
66723924 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
66723987 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
66724004 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66724029 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:66724028 original size:40 final size:40
Alignment explanation
Indices: 66723825--66724028 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
66723815 CGGAATTTAA
** *
66723825 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
66723865 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
66723905 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
66723944 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
66723984 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
66724024 CCGGA
1 CCGGA
66724029 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Done.