Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 206 of 290
Found at i:66731928 original size:40 final size:39
Alignment explanation
Indices: 66731891--66731982 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
66731881 GCTACTCGTT
*
66731891 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
66731931 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
66731970 CAAATGCCTTCGG
1 CAAATGCCTTCGG
66731983 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:66731962 original size:39 final size:40
Alignment explanation
Indices: 66731872--66732035 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
66731862 CGGAATTTAA
** *
66731872 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
66731912 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
66731951 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
66731991 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
66732031 CCGGA
1 CCGGA
66732036 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:66746361 original size:21 final size:19
Alignment explanation
Indices: 66746315--66746363 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
66746305 TACCCAACCC
66746315 ATATGCA-ATCTATGCAGA
1 ATATGCATATCTATGCAGA
*
66746333 ATAT-CATATGTATGCAGCA
1 ATATGCATATCTATGCAG-A
66746352 GATATGCATATC
1 -ATATGCATATC
66746364 ACATCCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 2 0.08
18 13 0.52
19 1 0.04
20 4 0.16
21 5 0.20
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (19 bp):
ATATGCATATCTATGCAGA
Found at i:66746784 original size:29 final size:29
Alignment explanation
Indices: 66746743--66746813 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
66746733 CACTAGGCCT
* *
66746743 AATCACATTTATATGGCCTATTAGGCCCA
1 AATCACATTTATATGGCCCATCAGGCCCA
66746772 AATCACATTTATATGGCCCATCAGGCCCA
1 AATCACATTTATATGGCCCATCAGGCCCA
*
66746801 ATTCACATTTATA
1 AATCACATTTATA
66746814 GTCATGCTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.31
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATCAGGCCCA
Found at i:66750555 original size:28 final size:29
Alignment explanation
Indices: 66750472--66750567 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
66750462 GAAAGCATGT
*
66750472 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
66750501 GCATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
66750530 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
66750558 ATATGCATGT
1 ATATGAATGT
66750568 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
28 23 0.40
29 35 0.60
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:66758472 original size:25 final size:25
Alignment explanation
Indices: 66758438--66758503 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
66758428 GAGGAAGTGC
*
66758438 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
66758463 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
66758488 AAAAAGGCTTTACCCC
1 AAAAGGGCTTTGCCCC
66758504 GATTATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:66758509 original size:24 final size:25
Alignment explanation
Indices: 66758438--66758520 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 25
66758428 GAGGAAGTGC
* *
66758438 AAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
66758463 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAAGGCTTTGCCCCAGTTTATCA
* * *
66758488 AAAAAGGCTTTACCCC-GATTATTA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
66758512 AAAGAGGCT
1 AAAAAGGCT
66758521 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 14 0.27
25 38 0.73
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (25 bp):
AAAAAGGCTTTGCCCCAGTTTATCA
Found at i:66758790 original size:30 final size:32
Alignment explanation
Indices: 66758754--66758818 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
66758744 TGATATGAGT
*
66758754 TGTGAATTAT-AAAAGGCTTTGGCCCAGTA-A
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTACA
*
66758784 TGTGAATTATGAAGAGGCTTCGGCCCAGTACA
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTACA
66758816 TGT
1 TGT
66758819 TGAGATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.32
31 17 0.55
32 4 0.13
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (32 bp):
TGTGAATTATGAAAAGGCTTCGGCCCAGTACA
Found at i:66766266 original size:20 final size:21
Alignment explanation
Indices: 66766227--66766274 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
66766217 ATTTTGATAT
*
66766227 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
*
66766248 ACATGATAT-ATATGTTATGC
1 ACATGATATGATATGATATGC
66766268 ACATGAT
1 ACATGAT
66766275 GTATTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:66766423 original size:24 final size:25
Alignment explanation
Indices: 66766321--66766416 Score: 158
Period size: 25 Copynumber: 3.9 Consensus size: 25
66766311 GCAGGAAGTG
66766321 CAAAAA-GGCTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
* *
66766345 CGAAAAGGGCTTTGCCCTAGTTTAC
1 CAAAAAGGGCTTTGCCCCAGTTTAC
*
66766370 CAAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTGCCCCAGTTTAC
66766395 CAAAAAGGGCTTTGCCCCAGTT
1 CAAAAAGGGCTTTGCCCCAGTT
66766417 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 5 0.08
25 61 0.92
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTGCCCCAGTTTAC
Found at i:66766429 original size:24 final size:24
Alignment explanation
Indices: 66766321--66766429 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 24
66766311 GCAGGAAGTG
*
66766321 CAAAAAGGCTTTGCCCCAGTTTAC
1 CAAAAAGGCTTTGCCCCAGTTTAT
* * *
66766345 CGAAAAGGGCTTTGCCCTAGTTTAC
1 C-AAAAAGGCTTTGCCCCAGTTTAT
66766370 CAAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
66766395 CAAAAAGGGCTTTGCCCCAG-TTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
*
66766419 TAAAAGAGGCT
1 CAAAA-AGGCT
66766430 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
24 17 0.22
25 59 0.78
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAAGGCTTTGCCCCAGTTTAT
Found at i:66766440 original size:50 final size:50
Alignment explanation
Indices: 66766333--66766441 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
66766323 AAAAGGCTTT
* * **
66766333 GCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACCAAAAAGGGCTTT
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAG
* **
66766383 GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAG
1 GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAG-GGCTAG
66766432 GCCTCCAGTT
1 GCC-CCAGTT
66766442 ATATGATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
48 5 0.10
49 10 0.20
50 35 0.70
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (50 bp):
GCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAG
Found at i:66766698 original size:30 final size:32
Alignment explanation
Indices: 66766662--66766726 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
66766652 TGATATGAGT
66766662 TGTGAATTAT-AAAAGGCTTCAGCCCAGTA-A
1 TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
* *
66766692 TGTGAATTATGAAGAGGCTTCGGCCCAGTATA
1 TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
66766724 TGT
1 TGT
66766727 TGAAATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.32
31 17 0.55
32 4 0.13
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (32 bp):
TGTGAATTATGAAAAGGCTTCAGCCCAGTATA
Found at i:66771470 original size:7 final size:7
Alignment explanation
Indices: 66771458--66771510 Score: 97
Period size: 7 Copynumber: 7.6 Consensus size: 7
66771448 TTGTACTTTT
66771458 ACCCTAA
1 ACCCTAA
66771465 ACCCTAA
1 ACCCTAA
66771472 ACCCTAA
1 ACCCTAA
66771479 ACCCTAA
1 ACCCTAA
*
66771486 ACCGTAA
1 ACCCTAA
66771493 ACCCTAA
1 ACCCTAA
66771500 ACCCTAA
1 ACCCTAA
66771507 ACCC
1 ACCC
66771511 GTTAATGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.42, C:0.43, G:0.02, T:0.13
Consensus pattern (7 bp):
ACCCTAA
Found at i:66789524 original size:29 final size:28
Alignment explanation
Indices: 66789459--66789598 Score: 117
Period size: 29 Copynumber: 4.9 Consensus size: 28
66789449 TACATACACG
*
66789459 CATATGGCTCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATCT-GGCCCAAT-TCACTT
*
66789487 TATATGGCCCATCTGGCCCAATTCACGTT
1 CATATGGCCCATCTGGCCCAATTCAC-TT
*
66789516 CATATGGCCCATCAGGCCCAATTCACATT
1 CATATGGCCCATCTGGCCCAATTCAC-TT
* * *
66789545 CATATAGCCCAT-TAAGCCTAATCTCA-TT
1 CATATGGCCCATCT-GGCCCAAT-TCACTT
* * *
66789573 TATATTGCCCATCTGGCCCAAATCAC
1 CATATGGCCCATCTGGCCCAATTCAC
66789599 ATTATGTTTA
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
27 6 0.07
28 34 0.37
29 48 0.53
30 3 0.03
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (28 bp):
CATATGGCCCATCTGGCCCAATTCACTT
Found at i:66794124 original size:29 final size:29
Alignment explanation
Indices: 66794052--66794192 Score: 153
Period size: 29 Copynumber: 4.9 Consensus size: 29
66794042 AACCCCTACA
* *
66794052 TACATGCATATGGCCCA-CTAGGCCCAATC
1 TACATTCATATGGCCCATC-AGGCCCAATT
* *
66794081 T-CATTTATATGGCCCATCCGGCCCAATT
1 TACATTCATATGGCCCATCAGGCCCAATT
*
66794109 TACGTTCATATGGCCCATCAGGCCCAATT
1 TACATTCATATGGCCCATCAGGCCCAATT
* * *
66794138 CACATTCATATGGCCCATTAGGCCCAATC
1 TACATTCATATGGCCCATCAGGCCCAATT
* * *
66794167 T-CATTTATATAGCCCATCTGGCCCAA
1 TACATTCATATGGCCCATCAGGCCCAA
66794193 ATCACATTAT
Statistics
Matches: 94, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
28 43 0.46
29 51 0.54
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
TACATTCATATGGCCCATCAGGCCCAATT
Found at i:66794198 original size:57 final size:58
Alignment explanation
Indices: 66794052--66794200 Score: 169
Period size: 57 Copynumber: 2.6 Consensus size: 58
66794042 AACCCCTACA
* * * * *
66794052 TACATGCATATGGCCCA-CTAGGCCC-AATCTCATTTATATGGCCCATCCGGCCCAATT
1 TACATTCATATGGCCCATCT-GGCCCAAATCACATTCATATGGCCCATCAGGCCCAATC
* * * *
66794109 TACGTTCATATGGCCCATCAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATC
1 TACATTCATATGGCCCATCTGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATC
* *
66794167 T-CATTTATATAGCCCATCTGGCCCAAATCACATT
1 TACATTCATATGGCCCATCTGGCCCAAATCACATT
66794201 ATGTTCATGC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
57 48 0.63
58 28 0.37
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (58 bp):
TACATTCATATGGCCCATCTGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATC
Found at i:66794289 original size:9 final size:9
Alignment explanation
Indices: 66794274--66794309 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
66794264 TGGGCCCACC
66794274 AGCCCATTT
1 AGCCCATTT
*
66794283 GGCCCATTT
1 AGCCCATTT
*
66794292 AGCCCATTC
1 AGCCCATTT
66794301 AGCCCATTT
1 AGCCCATTT
66794310 GGCCTATTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.19, C:0.36, G:0.14, T:0.31
Consensus pattern (9 bp):
AGCCCATTT
Found at i:66794297 original size:18 final size:18
Alignment explanation
Indices: 66794274--66794319 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
66794264 TGGGCCCACC
**
66794274 AGCCCATTTGGCCCATTT
1 AGCCCATTCAGCCCATTT
66794292 AGCCCATTCAGCCCATTT
1 AGCCCATTCAGCCCATTT
* *
66794310 GGCCTATTCA
1 AGCCCATTCA
66794320 CAGCCCGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30
Consensus pattern (18 bp):
AGCCCATTCAGCCCATTT
Found at i:66804173 original size:40 final size:40
Alignment explanation
Indices: 66804112--66804335 Score: 236
Period size: 40 Copynumber: 5.5 Consensus size: 40
66804102 TATTTGGATG
** * *
66804112 ATATCCGGGCTAAGTGTCGAAGGTATTTCTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
66804152 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
66804195 ATA-CTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** * *
66804235 ATATCCGGGCTAAGTCTCGAAGGTATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
66804275 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
66804315 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66804336 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 24, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
39 13 0.08
40 104 0.67
41 2 0.01
42 1 0.01
43 35 0.23
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:66804256 original size:83 final size:80
Alignment explanation
Indices: 66804112--66804335 Score: 240
Period size: 83 Copynumber: 2.8 Consensus size: 80
66804102 TATTTGGATG
** * * * *
66804112 ATATCCGGGCTAAGTGTCGAAGGTATTTCTGCAAGTTACTATATCCGGGTTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
**
66804177 TTTGTGCGAGTAGTTG-CT
66 TTCATGC---TAG-TGACT
* * *
66804195 ATA-CTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGC
66804259 ATTCATGCTAGTGACT
65 ATTCATGCTAGTGACT
* * *
66804275 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
66804336 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
79 15 0.12
80 44 0.36
81 3 0.02
82 1 0.01
83 59 0.48
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:66805118 original size:11 final size:12
Alignment explanation
Indices: 66805093--66805125 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
66805083 AAAATAGTAG
66805093 TAATGTAATTAAA
1 TAATGTAA-TAAA
66805106 TAAT-TAATAAA
1 TAATGTAATAAA
66805117 TAATGTAAT
1 TAATGTAAT
66805126 CGAACCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.42
12 7 0.37
13 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (12 bp):
TAATGTAATAAA
Found at i:66812256 original size:40 final size:40
Alignment explanation
Indices: 66812163--66812341 Score: 244
Period size: 39 Copynumber: 4.5 Consensus size: 40
66812153 TATTCGAATG
* *
66812163 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66812202 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
66812242 ATATCCGGGCTAAGTCCCGAAGGCA--T-TGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
66812279 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGAC--T
*
66812321 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66812342 ACTTGGGTTT
Statistics
Matches: 127, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
37 35 0.28
38 1 0.01
39 37 0.29
40 32 0.25
41 15 0.12
42 7 0.06
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:66812310 original size:77 final size:79
Alignment explanation
Indices: 66812163--66812341 Score: 242
Period size: 77 Copynumber: 2.3 Consensus size: 79
66812153 TATTCGAATG
* *
66812163 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCAAGTGATATATCCGGGCTAAGACCCGAAGGCAT
*
66812228 TTGTGCTAG-TG-ACT
65 TTGTGCGAGTTGCA-T
*
66812242 ATATCCGGGCTAAGTCCCGAAGGCA-T-TGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCAAGTGA-TATATCCGGGCTAAGACCCGAAGGCAT
66812305 TTGTGCGAGTTGCTAT
65 TTGTGCGAGTTGC-AT
*
66812321 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66812342 ACTTGGGTTT
Statistics
Matches: 91, Mismatches: 5, Indels: 9
0.87 0.05 0.09
Matches are distributed among these distances:
76 7 0.08
77 35 0.38
78 16 0.18
79 32 0.35
80 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGTGCAAGTGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGCAT
Found at i:66814042 original size:46 final size:46
Alignment explanation
Indices: 66813992--66814159 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
66813982 GTTGAGCATC
66813992 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGA
* * * * *
66814038 ACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAAGCATCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCCGA
* * *
66814085 ACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGA
* *
66814131 GCTCGTTAAGTTGAGTCCGAGTTCACTTA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTA
66814160 GGGGCAGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 53 0.53
47 28 0.28
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGA
Found at i:66817250 original size:28 final size:28
Alignment explanation
Indices: 66817203--66817328 Score: 89
Period size: 28 Copynumber: 4.4 Consensus size: 28
66817193 CATACATGGC
66817203 ATATGGCCCA-CCTAGG-CCAATCTCATTT
1 ATATGGCCCATCC--GGCCCAATCTCATTT
* * *
66817231 ATATGGCCCATCCGGCCCAATTTACGTTC
1 ATATGGCCCATCCGGCCCAATCT-CATTT
* * *
66817260 ATAATGGCCCCATCAGGCCCATTCACATTT
1 AT-ATGG-CCCATCCGGCCCAATCTCATTT
**
66817290 CATATGG-CCAT-TAGCCCAATCTCATTT
1 -ATATGGCCCATCCGGCCCAATCTCATTT
*
66817317 ATATAGCCCATC
1 ATATGGCCCATC
66817329 TGCCAAATCA
Statistics
Matches: 76, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
26 5 0.07
27 18 0.24
28 20 0.26
29 7 0.09
30 11 0.14
31 15 0.20
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (28 bp):
ATATGGCCCATCCGGCCCAATCTCATTT
Found at i:66817449 original size:18 final size:18
Alignment explanation
Indices: 66817426--66817461 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
66817416 ACCACCCATT
66817426 GCCCATTTAGCCCATTCA
1 GCCCATTTAGCCCATTCA
* *
66817444 GCCCATTTGGCCTATTCA
1 GCCCATTTAGCCCATTCA
66817462 CAGCCCGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.36, G:0.14, T:0.31
Consensus pattern (18 bp):
GCCCATTTAGCCCATTCA
Found at i:66836237 original size:39 final size:39
Alignment explanation
Indices: 66836111--66836280 Score: 177
Period size: 42 Copynumber: 4.3 Consensus size: 39
66836101 TATTCGAATG
*
66836111 ATATCCGGG-TAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAA-GCATTTGTGCTAGTTACT
* * *
66836150 ATATCTGGGCTAAGTCCCATGAAGGATTTGTCGCTAGTGACT
1 ATATCCGGGCTAAGTCCC--GAAGCATTTGT-GCTAGTTACT
**
66836192 ATATCCGGGCTAAGTCCCGAAGCATTCATGCTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGCATTTGTGCTAGTTACT
* * * *
66836231 AGATCCGGGCT-AG-ACCGAAGACATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAG-CATTTGTGCTAGTTACT
66836269 ATATCC-GGCTAA
1 ATATCCGGGCTAA
66836281 AATCCCGAGA
Statistics
Matches: 109, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
37 10 0.09
38 21 0.19
39 27 0.25
40 16 0.15
41 7 0.06
42 28 0.26
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGCATTTGTGCTAGTTACT
Found at i:66846777 original size:40 final size:40
Alignment explanation
Indices: 66846638--66846996 Score: 510
Period size: 40 Copynumber: 9.1 Consensus size: 40
66846628 AGGTCTCGAC
66846638 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66846677 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66846716 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66846755 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
66846795 GATGTATCCGGACTAAGTCTCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66846835 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
66846875 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
66846915 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * * *
66846955 GTTATATCCGGGCTAGGTCCCAAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66846995 GA
1 GA
66846997 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 25, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
39 81 0.28
40 208 0.71
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:66849677 original size:79 final size:81
Alignment explanation
Indices: 66849541--66849725 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
66849531 TTGAATGATG
*
66849541 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
66849605 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
66849620 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
66849682 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
66849700 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66849726 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:66849739 original size:40 final size:40
Alignment explanation
Indices: 66849542--66849725 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
66849532 TGAATGATGT
* * * *
66849542 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
66849582 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
66849622 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66849660 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66849701 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
66849726 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:66849747 original size:79 final size:79
Alignment explanation
Indices: 66849594--66849758 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
66849584 GGACTAAGAT
* **
66849594 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
66849659 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
66849673 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
66849736 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
66849752 CCGAAGG
1 CCGAAGG
66849759 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:66851842 original size:40 final size:40
Alignment explanation
Indices: 66851781--66852140 Score: 501
Period size: 40 Copynumber: 9.1 Consensus size: 40
66851771 AGGTCTCGAC
66851781 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
66851820 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
66851860 GATGTACCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66851900 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66851940 GATGTATCCGGACTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66851979 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
66852019 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
66852059 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * * *
66852099 GTTATATCCGGGCTAGGTCCCAAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66852139 GA
1 GA
66852141 CGTGTATTCG
Statistics
Matches: 290, Mismatches: 27, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
39 43 0.15
40 245 0.84
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:66852088 original size:159 final size:160
Alignment explanation
Indices: 66851781--66852140 Score: 519
Period size: 159 Copynumber: 2.3 Consensus size: 160
66851771 AGGTCTCGAC
*
66851781 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGACTAAGTCCCGAAG
* * *
66851845 AGCATTCGTGCTAGTGATGTACCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGTATCCG
66 AGCATTCATGCTAGTGATGTACCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTAATATATCCG
*
66851910 GGCTAAGTCCCGAAGAGCATTCGTGCTAGT
131 GGCTAAGACCCGAAGAGCATTCGTGCTAGT
* *
66851940 GATGTATCCGGACTAAGT-CCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGACTAAGTCCCGAAG
* * * *
66852004 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCG
66 AGCATTCATGCTAGTGATGTACCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTAATATATCCG
* *
66852069 TGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
131 GGCTAAGACC-CGAAGAGCATTCGTGCTAGT
* * * * * *
66852099 GTTATATCCGGGCTAGGTCCCAAAGAGCAATCATGCTGGTGA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
66852141 CGTGTATTCG
Statistics
Matches: 178, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
158 2 0.01
159 144 0.81
160 32 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (160 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCCGGACTAAGTCCCGAAG
AGCATTCATGCTAGTGATGTACCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTAATATATCCG
GGCTAAGACCCGAAGAGCATTCGTGCTAGT
Found at i:66854818 original size:79 final size:81
Alignment explanation
Indices: 66854682--66854866 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
66854672 TTGAATGATG
*
66854682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
66854746 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
66854761 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
66854823 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
66854841 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66854867 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:66854880 original size:40 final size:40
Alignment explanation
Indices: 66854683--66854866 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
66854673 TGAATGATGT
* * * *
66854683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
66854723 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
66854763 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66854801 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66854842 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
66854867 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:66854888 original size:79 final size:79
Alignment explanation
Indices: 66854735--66854899 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
66854725 GGACTAAGAT
* **
66854735 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
66854800 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
66854814 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
66854877 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
66854893 CCGAAGG
1 CCGAAGG
66854900 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:66857065 original size:40 final size:40
Alignment explanation
Indices: 66856911--66857269 Score: 510
Period size: 40 Copynumber: 9.1 Consensus size: 40
66856901 AGGTCTCGAC
66856911 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66856950 GATGTA-CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66856989 GATGTACCCGGGCTAAGTCCC-AAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66857028 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66857068 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
66857108 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
66857148 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
66857188 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * * *
66857228 GTTATATCCGGGCTAGGTCCCAAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66857268 GA
1 GA
66857270 CGTGTATTCG
Statistics
Matches: 291, Mismatches: 24, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
39 80 0.27
40 209 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:66860750 original size:37 final size:37
Alignment explanation
Indices: 66860700--66860778 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
66860690 TTATTACGAA
* *
66860700 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
66860737 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
66860774 GTCTT
1 GTCTT
66860779 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:66861045 original size:47 final size:47
Alignment explanation
Indices: 66860895--66861319 Score: 674
Period size: 47 Copynumber: 9.1 Consensus size: 47
66860885 CCCTTCGGGA
* * * * * * * *
66860895 CTTATCACATTTATGCACTTTCGCATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66860942 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66860988 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66861035 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66861082 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66861129 CTTATCACATATATACA-TTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
66861175 CTTATAACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66861222 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66861269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66861316 CTTA
1 CTTA
66861320 CTATCATTTC
Statistics
Matches: 356, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 84 0.24
47 272 0.76
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66861150 original size:140 final size:141
Alignment explanation
Indices: 66860946--66861319 Score: 689
Period size: 140 Copynumber: 2.7 Consensus size: 141
66860936 CTCGGCCCTG
66860946 TCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
* *
66861010 ACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCT
66 ACATTCATCACATCGGCCATTAGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCT
66861075 ATTAGGCCTTA
131 ATTAGGCCTTA
*
66861086 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA-TTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
*
66861150 ACATTCATCACATCGGCTATTAGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCT
66 ACATTCATCACATCGGCCATTAGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCT
66861215 ATTAGGCCTTA
131 ATTAGGCCTTA
*
66861226 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
66861291 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
66861320 CTATCATTTC
Statistics
Matches: 225, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
140 160 0.71
141 65 0.29
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCT
ATTAGGCCTTA
Found at i:66861210 original size:187 final size:187
Alignment explanation
Indices: 66860895--66861319 Score: 672
Period size: 187 Copynumber: 2.3 Consensus size: 187
66860885 CCCTTCGGGA
* * * * * * * * * *
66860895 CTTATCACATTTATGCACTTTCGCATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
66860960 TTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTTCACATTCACACATCGGCCATTAGGCCTTATAACACATATACACTTTCACATTCATCACATCG
* * *
66861025 GCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66861082 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
66861146 TTTCACATTCATCACATCGGCTATTAGGCCTTATAACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCA-CACATCGGCCATTAGGCCTTATAACACATATACACTTTCACATTCATCACATC
*
66861211 GGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
66861269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66861320 CTATCATTTC
Statistics
Matches: 218, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
186 11 0.05
187 207 0.95
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (187 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCACACATCGGCCATTAGGCCTTATAACACATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66864386 original size:79 final size:81
Alignment explanation
Indices: 66864250--66864434 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
66864240 TTGAATGATG
*
66864250 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
66864314 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
66864329 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
66864391 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
66864409 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
66864435 AAAGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:66864448 original size:40 final size:40
Alignment explanation
Indices: 66864251--66864434 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
66864241 TGAATGATGT
* * * *
66864251 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
66864291 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
66864331 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66864369 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
66864410 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
66864435 AAAGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:66864456 original size:79 final size:79
Alignment explanation
Indices: 66864303--66864467 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
66864293 GGACTAAGAT
* ***
66864303 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAAAGAGTTACTAA
*
66864368 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
66864382 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAAAGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAAAGAGTTA-C
* *
66864445 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
66864461 CCGAAGG
1 CCGAAGG
66864468 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAAAGAGTTACTAA
ATCCGGGTTAAATC
Found at i:66873620 original size:27 final size:27
Alignment explanation
Indices: 66873552--66873627 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
66873542 ATATTTGTTC
* * *
66873552 TGGTGGCCTAGCCATAATATCT-TATT
1 TGGTGACCTAGCCACAATATCTGTATA
66873578 TGGTGACCTAGCCACAATATCTGTATA
1 TGGTGACCTAGCCACAATATCTGTATA
* * *
66873605 TGGTGACTTCGTCACAATATCTG
1 TGGTGACCTAGCCACAATATCTG
66873628 GCAGCTTCGC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TGGTGACCTAGCCACAATATCTGTATA
Found at i:66877153 original size:50 final size:50
Alignment explanation
Indices: 66877078--66877316 Score: 224
Period size: 50 Copynumber: 4.9 Consensus size: 50
66877068 TGATGCTAGG
*
66877078 GAGATATGAGAGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
66877128 GAGATATGAGAGCTAGTATAAGACCATGTCTAGGACATGGCATCGG-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * * *
66877176 -TGATCTGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * * **
66877223 AATAGATGAGAGCCAGTGTAAGACCATGTCTGGGACATAGCATC-GAAT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
** * * * *
66877271 TTGATGTGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGG
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
66877317 AAACTTACCC
Statistics
Matches: 154, Mismatches: 27, Indels: 17
0.78 0.14 0.09
Matches are distributed among these distances:
45 29 0.19
46 1 0.01
47 7 0.05
48 40 0.26
49 5 0.03
50 72 0.47
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:66877259 original size:95 final size:97
Alignment explanation
Indices: 66877092--66877311 Score: 284
Period size: 95 Copynumber: 2.3 Consensus size: 97
66877082 TATGAGAGCT
* * * * *
66877092 AGTGTAAGACCATGTATGGGACATGGCATCGGCCTCGAGATATGAGAGCTAGTATAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGAGATGAGAGCCAGTATAAGACCATGT
* * *
66877157 CTAGGACATGGCATCG-GCTTGATCTGT-GTC
66 CTAGGACATAGCATCGAACTTGATCTGTAGCC
* *
66877187 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-CAATAGATGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCAAGAGATGAGAGCCAGTATAAGACCATG
* * *
66877251 TCTGGGACATAGCATCGAATTTGATGTGTGAGCC
65 TCTAGGACATAGCATCGAACTTGATCTGT-AGCC
66877285 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
66877312 GTCGGAAACT
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
95 70 0.65
96 9 0.08
98 29 0.27
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAAGAGATGAGAGCCAGTATAAGACCATGT
CTAGGACATAGCATCGAACTTGATCTGTAGCC
Found at i:66886732 original size:38 final size:38
Alignment explanation
Indices: 66886707--66886829 Score: 176
Period size: 38 Copynumber: 3.2 Consensus size: 38
66886697 CCGACAGTAG
66886707 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
* *
66886745 GCCTGCGGGATTTAATCCGGATATATTACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
* * * *
66886783 GCCTGTGAGATTTAACCCGGATATAATTCCAGCA-TATA
1 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGA-A
66886821 GCCTGCGGG
1 GCCTGCGGG
66886830 TCTTTAAGCC
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
37 1 0.01
38 73 0.99
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (38 bp):
GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
Found at i:66889370 original size:28 final size:27
Alignment explanation
Indices: 66889306--66889370 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
66889296 ACACAAATTG
* * *
66889306 AAAATATAATAAAAAGTGATTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
* *
66889333 AAATTGAAAATAAAATGTAAATATGATTA
1 AAAAT-AAAATAAAAAGTAAATAT-ATTA
66889362 AAAATAAAA
1 AAAATAAAA
66889371 AATATATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 18 0.60
29 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:66897478 original size:13 final size:13
Alignment explanation
Indices: 66897460--66897484 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66897450 ACAAACGATA
66897460 AAATTTTCACACG
1 AAATTTTCACACG
66897473 AAATTTTCACAC
1 AAATTTTCACAC
66897485 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:66899569 original size:39 final size:40
Alignment explanation
Indices: 66899524--66899748 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
66899514 GCTCCTCGTT
* * * *
66899524 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
66899564 C-AATGCCTTCGGGACTTAACCCGGATTTAAT-ACTTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
* *
66899603 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
66899643 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
66899683 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
66899724 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
66899749 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 36 0.23
40 102 0.65
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66899689 original size:80 final size:80
Alignment explanation
Indices: 66899524--66899748 Score: 251
Period size: 80 Copynumber: 2.8 Consensus size: 80
66899514 GCTCCTCGTT
* * * * *
66899524 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACCTCGCACAAAGCCTTCGGGACTTAACCCGGA
66899588 ATTTAATACTTCGCA
66 ATTTAATACTTCGCA
* * *
66899603 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACCTCGCACAAA-GCCTTCGGGACTTAACCCGG
*
66899668 AATTT-GTA-TCTCGCA
65 AATTTAATACT-TCGCA
* * * * * *
66899683 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACCTCGCACAAAGCCTTCGGGACTTAACCCG
66899747 GA
64 GA
66899749 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 41 0.33
80 68 0.55
81 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACCTCGCACAAAGCCTTCGGGACTTAACCCGGA
ATTTAATACTTCGCA
Found at i:66899757 original size:41 final size:41
Alignment explanation
Indices: 66899680--66899757 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66899670 TTTGTATCTC
* * *
66899680 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66899721 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66899758 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66909058 original size:42 final size:44
Alignment explanation
Indices: 66908958--66909064 Score: 112
Period size: 42 Copynumber: 2.5 Consensus size: 44
66908948 TAAGACTGTA
* * **
66908958 TCTGGGACACAGGCCTCGAT-TGATATTTATGTATAAAACCATG
1 TCTGGGACAGAGGCATCGATATCTTATTTATGTATAAAACCATG
** * *
66909001 TCTGGGACATCGGCATC-ATATCTTATTT-TGTGTAAAACCCTG
1 TCTGGGACAGAGGCATCGATATCTTATTTATGTATAAAACCATG
*
66909043 TCTGGGATAGAGGCATCGATAT
1 TCTGGGACAGAGGCATCGATAT
66909065 TGAATTACAT
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.54
43 24 0.46
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (44 bp):
TCTGGGACAGAGGCATCGATATCTTATTTATGTATAAAACCATG
Found at i:66913846 original size:44 final size:41
Alignment explanation
Indices: 66913767--66913893 Score: 121
Period size: 42 Copynumber: 3.0 Consensus size: 41
66913757 TTCTAATATG
* ** *
66913767 TGATTTCGTGTAAGACCACGTCTAAGACGTTGGCATTG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGAC-ATGGCATTGTATT
*
66913808 TGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATGTCTGGGACAT-GGCATTGTATT
* * *
66913853 TGATTTCATGTAAGACCCTATCTGGGACAGTGGCATTGTAT
1 TGATTTCGTGTAAGACCATGTCTGGGACA-TGGCATTGTAT
66913894 GAGCTTTTCG
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 29 0.41
43 12 0.17
44 25 0.35
45 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGTATT
Found at i:66920199 original size:47 final size:47
Alignment explanation
Indices: 66920136--66920514 Score: 598
Period size: 47 Copynumber: 8.1 Consensus size: 47
66920126 GAAATGATAG
* *
66920136 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66920183 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66920230 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66920277 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66920324 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66920371 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66920418 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * * *
66920465 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66920511 TAAG
1 TAAG
66920515 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 37 0.12
47 278 0.88
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:66922596 original size:29 final size:29
Alignment explanation
Indices: 66922561--66922632 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
66922551 GTTGTGAGAT
* *
66922561 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
66922590 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
66922619 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
66922633 TGTGGTTGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:66923069 original size:40 final size:40
Alignment explanation
Indices: 66922946--66923141 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
66922936 TCGAATGATG
** *
66922946 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
66922986 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
66923026 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
66923066 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
66923106 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
66923142 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:66923082 original size:80 final size:81
Alignment explanation
Indices: 66922946--66923142 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
66922936 TCGAATGATG
**
66922946 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
66923008 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
66923026 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
* *
66923090 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
66923106 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
66923143 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:66923333 original size:25 final size:25
Alignment explanation
Indices: 66923304--66923355 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
66923294 TGTGTATTAA
66923304 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* * *
66923329 TGAATAATTAGAGGCACTGTGTGTG
1 TGAATAATAAGAGGCACTATGTATG
66923354 TG
1 TG
66923356 TGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:66923957 original size:47 final size:47
Alignment explanation
Indices: 66923903--66924293 Score: 512
Period size: 47 Copynumber: 8.0 Consensus size: 47
66923893 ACTTTCGGTT
*
66923903 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
66923950 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * *** *
66923997 AGGCCTAATAGTTGGTTAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AGGCCT-A-A------TA-GCC-GAT-G-TGATGAAT-----GTGAAAGTGTATATATGTGATA
66924061 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
66924108 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
66924155 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
66924202 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
66924249 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66924294 CGGGGCAGAG
Statistics
Matches: 313, Mismatches: 14, Indels: 34
0.87 0.04 0.09
Matches are distributed among these distances:
47 257 0.82
48 1 0.00
49 1 0.00
52 4 0.01
53 1 0.00
54 2 0.01
55 5 0.02
56 5 0.02
57 2 0.01
58 1 0.00
59 4 0.01
62 1 0.00
63 1 0.00
64 28 0.09
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
Found at i:66924024 original size:64 final size:64
Alignment explanation
Indices: 66923950--66924071 Score: 244
Period size: 64 Copynumber: 1.9 Consensus size: 64
66923940 ATGTGTGATA
66923950 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGTTGGTT
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGTTGGTT
66924014 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
1 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
66924072 CCGATGTGAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.30
Consensus pattern (64 bp):
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGTTGGTT
Found at i:66924093 original size:111 final size:111
Alignment explanation
Indices: 66923899--66924116 Score: 427
Period size: 111 Copynumber: 2.0 Consensus size: 111
66923889 GTGTACTTTC
66923899 GGTTAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 GGTTAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
*
66923964 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGTT
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTT
66924010 GGTTAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 GGTTAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
66924075 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66924117 GGCCGATGTG
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.30
Consensus pattern (111 bp):
GGTTAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTT
Found at i:66924308 original size:47 final size:47
Alignment explanation
Indices: 66924014--66924344 Score: 527
Period size: 47 Copynumber: 7.0 Consensus size: 47
66924004 ATAGTTGGTT
* *
66924014 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
66924061 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66924108 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
66924155 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66924202 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
**
66924249 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACG
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* ** * * * * * *
66924296 GGGCAGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66924343 AG
1 AG
66924345 TCCCGAAGGG
Statistics
Matches: 266, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 266 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
Found at i:66926103 original size:35 final size:35
Alignment explanation
Indices: 66926057--66926127 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
66926047 TACGCGAAGT
66926057 TGGTTTTCTGGGACATAATGTATCAGCGTCTGGTA
1 TGGTTTTCTGGGACATAATGTATCAGCGTCTGGTA
* *
66926092 TGGTTTTCTGGGACATATTGTATCAGTGTCTGGTA
1 TGGTTTTCTGGGACATAATGTATCAGCGTCTGGTA
66926127 T
1 T
66926128 CTGAGTTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.18, C:0.13, G:0.28, T:0.41
Consensus pattern (35 bp):
TGGTTTTCTGGGACATAATGTATCAGCGTCTGGTA
Found at i:66928566 original size:20 final size:19
Alignment explanation
Indices: 66928538--66928580 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
66928528 TGGAGTCCTT
* *
66928538 ATGATGTTATTAGACCATTA
1 ATGAGGTTAATAGA-CATTA
*
66928558 ATGAGGTTAATGGACATTA
1 ATGAGGTTAATAGACATTA
66928577 ATGA
1 ATGA
66928581 CCATCCATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (19 bp):
ATGAGGTTAATAGACATTA
Found at i:66929641 original size:42 final size:43
Alignment explanation
Indices: 66929529--66929641 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 43
66929519 GTGATTTTGC
*
66929529 GTAAGACCATGTCTGGGACATTGGCATCGATTTGAGATTTACAT
1 GTAAGACCATGTCTGGGACAATGGCATCGATTT-AGATTTACAT
* *
66929573 GTAAGACCATGTCTGGGAC-ATCGGCATCGTATTT-GA-TTCCGT
1 GTAAGACCATGTCTGGGACAAT-GGCATCG-ATTTAGATTTACAT
* **
66929615 GTAGGACGTTGTCTGGGACAATGGCAT
1 GTAAGACCATGTCTGGGACAATGGCAT
66929642 TGTAACGCCC
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
42 25 0.42
43 5 0.08
44 26 0.43
45 4 0.07
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
GTAAGACCATGTCTGGGACAATGGCATCGATTTAGATTTACAT
Found at i:66936482 original size:17 final size:16
Alignment explanation
Indices: 66936460--66936492 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
66936450 CCCTTCTCAC
66936460 CTTTTCTTTTCTTCCAT
1 CTTTTCTTTTC-TCCAT
66936477 CTTTTCTTTTCTCCAT
1 CTTTTCTTTTCTCCAT
66936493 AGCCGAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (16 bp):
CTTTTCTTTTCTCCAT
Found at i:66937618 original size:26 final size:27
Alignment explanation
Indices: 66937580--66937663 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
66937570 GAGGAAGCGT
66937580 TCTGGTGGCTCTGCCACAAATATCT-T-
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
66937606 TTTGGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
66937633 TCTGGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
66937659 TCTGG
1 TCTGG
66937664 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
25 7 0.13
26 22 0.42
27 23 0.44
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:66937650 original size:27 final size:26
Alignment explanation
Indices: 66937578--66937663 Score: 120
Period size: 26 Copynumber: 3.3 Consensus size: 26
66937568 TGGAGGAAGC
66937578 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
66937605 -TTTTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
66937630 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
66937657 GTTCTGG
1 GTTCTGG
66937664 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
25 7 0.13
26 23 0.43
27 23 0.43
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:66943163 original size:15 final size:15
Alignment explanation
Indices: 66943140--66943169 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66943130 CATAATGTCT
*
66943140 TGTAGCTCTCTTGTA
1 TGTACCTCTCTTGTA
66943155 TGTACCTCTCTTGTA
1 TGTACCTCTCTTGTA
66943170 CACATGATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.47
Consensus pattern (15 bp):
TGTACCTCTCTTGTA
Found at i:66945936 original size:71 final size:67
Alignment explanation
Indices: 66945860--66946000 Score: 174
Period size: 67 Copynumber: 2.0 Consensus size: 67
66945850 CACCAGATAT
* * * *
66945860 AGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGCAAAGCCACCAGATTGCAGTGAG
1 AGATATTATGACGAAGCCACCAGAACAG----ATATATGTGGCAAAGCCACCAGATTGCAGCGAG
66945925 GCTACC
62 GCTACC
* * * *
66945931 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCAAGGCCACCAGATTGCAGCGAGGCTG
1 AGATATTATGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCTA
66945996 CC
66 CC
66945998 AGA
1 AGA
66946001 ACACTTCCTC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 39 0.63
71 23 0.37
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.19
Consensus pattern (67 bp):
AGATATTATGACGAAGCCACCAGAACAGATATATGTGGCAAAGCCACCAGATTGCAGCGAGGCTA
CC
Found at i:66946921 original size:40 final size:40
Alignment explanation
Indices: 66946866--66946993 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
66946856 ATATAATATA
66946866 TATATCCGGGTCAAATCCCGCAGGCTTCATGCTGGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCATGCTGGTAATG
* *
66946906 TATATCCGGGTCAAATCCCGCAGGCTTCGTGCTAGTAATG
1 TATATCCGGGTCAAATCCCGCAGGCTTCATGCTGGTAATG
* **
66946946 TATATCCGGGTTAAATATCGCAGGCTT-AGTGCTGGT-AT-
1 TATATCCGGGTCAAATCCCGCAGGCTTCA-TGCTGGTAATG
66946984 TATATCCGGG
1 TATATCCGGG
66946994 CTTAAAGTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
38 10 0.12
39 2 0.03
40 68 0.85
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTCAAATCCCGCAGGCTTCATGCTGGTAATG
Found at i:66947020 original size:80 final size:80
Alignment explanation
Indices: 66946866--66947023 Score: 178
Period size: 80 Copynumber: 2.0 Consensus size: 80
66946856 ATATAATATA
* **
66946866 TATATCCGGGTCAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCGGGTCAAATCCCGCAGGC
1 TATATCCGGGTCAAATACCGCAGGCTTCATGCTGGTAATGTATATCCGGGTCAAATCCCGCAGAA
*
66946931 TTCGTGCTAGTAATG
66 TTCGAGCTAGTAATG
* * * * *
66946946 TATATCCGGGTTAAATATCGCAGGCTT-AGTGCTGGT-AT-TATATCCGGGCTTAAAGTTCCGTA
1 TATATCCGGGTCAAATACCGCAGGCTTCA-TGCTGGTAATGTATATCCGGG-TCAAA-TCCCGCA
*
66947008 GAATTTGAGCTAGTAA
63 GAATTCGAGCTAGTAA
66947024 CTAGATTCGG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
78 10 0.15
79 7 0.11
80 48 0.74
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (80 bp):
TATATCCGGGTCAAATACCGCAGGCTTCATGCTGGTAATGTATATCCGGGTCAAATCCCGCAGAA
TTCGAGCTAGTAATG
Found at i:66956780 original size:28 final size:27
Alignment explanation
Indices: 66956747--66956799 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
66956737 TTAGAATACT
*
66956747 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
66956775 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
66956800 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:66956786 original size:27 final size:27
Alignment explanation
Indices: 66956756--66956854 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
66956746 TTTAGTTTAC
66956756 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
66956783 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
66956810 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
66956837 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
66956855 CCCGATTTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:66956855 original size:54 final size:54
Alignment explanation
Indices: 66956756--66956862 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
66956746 TTTAGTTTAC
* * *
66956756 TAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
66956810 TAAAATTACTGAAATAC-CTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
66956863 ACATAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.16
54 38 0.84
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:66956893 original size:38 final size:38
Alignment explanation
Indices: 66956851--66956929 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
66956841 ATTACCAAAG
* * *
66956851 TACCCCCGATTTACATAATTACCATTTTACCCCCGTTT
1 TACCCCCGACTTACAGAATTACCATTTTACCCCCGATT
* * * *
66956889 TACCCTCGACTTACAGGATTACCGTTTTACCCTCGATT
1 TACCCCCGACTTACAGAATTACCATTTTACCCCCGATT
66956927 TAC
1 TAC
66956930 AAAATTATCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.23, C:0.33, G:0.09, T:0.35
Consensus pattern (38 bp):
TACCCCCGACTTACAGAATTACCATTTTACCCCCGATT
Found at i:66957019 original size:27 final size:27
Alignment explanation
Indices: 66956886--66957020 Score: 164
Period size: 27 Copynumber: 5.0 Consensus size: 27
66956876 TTTACCCCCG
* * **
66956886 TTTTACCCTCGACTTACAGGATTACCG
1 TTTTACCCTCGATTTACAGAATTACTA
*
66956913 TTTTACCCTCGATTTACAAAATTA-TCA
1 TTTTACCCTCGATTTACAGAATTACT-A
* *
66956940 TTTTACCGTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
* *
66956967 TTTTACCCTTGGTTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
66956994 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
66957021 AAATACCCTT
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
27 90 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:66957019 original size:54 final size:54
Alignment explanation
Indices: 66956886--66957044 Score: 167
Period size: 54 Copynumber: 2.9 Consensus size: 54
66956876 TTTACCCCCG
* * ** * *
66956886 TTTTACCCTCGACTTACAGGATTACCGTTTTACCCTCGATTTACAAAATTATCA
1 TTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGGTTTACAAAATTATCA
* * *
66956940 TTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGGTTTACAGAATTA-CTA
1 TTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGGTTTACAAAATTATC-A
* *** **
66956994 TTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTA
1 TTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGGTTTACAAAATTA
66957045 CCAAAATACC
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 1 0.01
54 85 0.99
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.40
Consensus pattern (54 bp):
TTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGGTTTACAAAATTATCA
Found at i:66957027 original size:27 final size:27
Alignment explanation
Indices: 66956916--66957218 Score: 123
Period size: 27 Copynumber: 11.1 Consensus size: 27
66956906 ATTACCGTTT
***
66956916 TACCCTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-AAAA
* * * ***
66956943 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ***
66956970 TACCCTTGGTTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
66956997 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
66957024 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * *
66957051 TACCCATAG-TTTGCAAAATTACCAAAA
1 TACCC-TCGATTTACAAAATTACTAAAA
* * *** **
66957078 TACCCTAGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
66957105 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
66957132 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
66957159 TACCCTTC-ACTTT-CTAAAAATTATTGAAA
1 TACCC-TCGA-TTTAC--AAAATTACTAAAA
* * * *
66957188 TACCATAGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
66957215 TACC
1 TACC
66957219 TTTGGTTTGT
Statistics
Matches: 224, Mismatches: 39, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
26 5 0.02
27 194 0.87
28 10 0.04
29 15 0.07
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:66957045 original size:54 final size:54
Alignment explanation
Indices: 66956930--66957099 Score: 146
Period size: 54 Copynumber: 3.1 Consensus size: 54
66956920 CTCGATTTAC
* * * *** **
66956930 AAAATTA-TCATTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGGTTTAC
1 AAAATTACT-ATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT
*
66956984 AGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT
* *** * * * *
66957038 AAAATTACCAAAATACCCATAG-TTTGCAAAATTACCAAAATACCCTAGGTTTGT
1 AAAATTACTATTTTACCC-TCGATTTACAAAATTACTAAAATACCCTTGGTTTGT
*
66957092 GAAATTAC
1 AAAATTAC
66957100 CGAAATACCC
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
54 92 0.97
55 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (54 bp):
AAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT
Found at i:66957055 original size:81 final size:81
Alignment explanation
Indices: 66956970--66957164 Score: 185
Period size: 81 Copynumber: 2.4 Consensus size: 81
66956960 ATTACTATTT
* * * *** * * ***
66956970 TACCCTTGGTTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCATGGTTTACAAAATTACCAAAATACCCTAGATTTACAAAATTACCAAAATACCCTCAATT
66957035 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * * *** *
66957051 TACCCATAGTTTGCAAAATTACCAAAATACCCTAGGTTTGTGAAATTACCGAAATACCCTCAATT
1 TACCCATGGTTTACAAAATTACCAAAATACCCTAGATTTACAAAATTACCAAAATACCCTCAATT
66957116 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * *
66957132 TACCCCTGATTTACAAAGTTA-CAGAAATACCCT
1 TACCCATGGTTTACAAAATTACCA-AAATACCCT
66957165 TCACTTTCTA
Statistics
Matches: 90, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
80 2 0.02
81 88 0.98
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (81 bp):
TACCCATGGTTTACAAAATTACCAAAATACCCTAGATTTACAAAATTACCAAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:66957100 original size:54 final size:54
Alignment explanation
Indices: 66956997--66957136 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
66956987 ATTACTATTT
* * * *
66956997 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGCAAAATTACCAAAATACCCTAGGTTTGTAAAATTACCAAAA
* * *
66957051 TACCCAT-AGTTTGCAAAATTACCAAAATACCCTAGGTTTGTGAAATTACCGAAA
1 TACCC-TCAATTTGCAAAATTACCAAAATACCCTAGGTTTGTAAAATTACCAAAA
*
66957105 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGCAAAATTACCAAAATACCC
66957137 CTGATTTACA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (54 bp):
TACCCTCAATTTGCAAAATTACCAAAATACCCTAGGTTTGTAAAATTACCAAAA
Found at i:66957159 original size:54 final size:53
Alignment explanation
Indices: 66956997--66957164 Score: 155
Period size: 54 Copynumber: 3.1 Consensus size: 53
66956987 ATTACTATTT
* * * *
66956997 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGCAAAATTACCAAAATACCCCTGG-TT-TACAAATTA-CAGAAA
* ** *
66957051 TACCCAT-AGTTTGCAAAATTACCAAAATA-CCCTAGGTTTGTGAAATTACCGAAA
1 TACCC-TCAATTTGCAAAATTACCAAAATACCCCT-GGTTT-ACAAATTACAGAAA
* *
66957105 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGCAAAATTACCAAAATACCCCTGGTTTACAAA-TTACAGAAA
66957159 TACCCT
1 TACCCT
66957165 TCACTTTCTA
Statistics
Matches: 93, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
52 1 0.01
53 10 0.11
54 77 0.83
55 5 0.05
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (53 bp):
TACCCTCAATTTGCAAAATTACCAAAATACCCCTGGTTTACAAATTACAGAAA
Found at i:66957312 original size:27 final size:27
Alignment explanation
Indices: 66957277--66957344 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
66957267 ATACCCCTAT
*
66957277 TAGGGTAAAGTGACCGTAA-AGCCCCTG
1 TAGGGTAAAATGACCGTAACA-CCCCTG
66957304 TAGGGTAAAATGACCGTAACACCCCTG
1 TAGGGTAAAATGACCGTAACACCCCTG
*
66957331 TATGGTAAAATGAC
1 TAGGGTAAAATGAC
66957345 GAATATGCCC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAACACCCCTG
Found at i:66958617 original size:20 final size:20
Alignment explanation
Indices: 66958594--66958632 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
66958584 TAAACATGGT
66958594 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
66958614 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
66958633 TGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:66958739 original size:24 final size:23
Alignment explanation
Indices: 66958683--66958834 Score: 205
Period size: 24 Copynumber: 6.4 Consensus size: 23
66958673 GAGGAAGTGA
66958683 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
66958706 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
66958729 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
**
66958753 CAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
66958777 TAAAGGGCATATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
66958800 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
66958825 AAAAGAGGCT
1 AAAAG-GGCT
66958835 AGGCCTGCAG
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
23 41 0.36
24 68 0.60
25 5 0.04
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:66958752 original size:47 final size:47
Alignment explanation
Indices: 66958683--66958834 Score: 207
Period size: 47 Copynumber: 3.2 Consensus size: 47
66958673 GAGGAAGTGA
*
66958683 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* **
66958729 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
66958777 TAAAGGGCATATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
66958825 AAAAGAGGCT
1 AAAAG-GGCT
66958835 AGGCCTGCAG
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 63 0.69
48 25 0.27
49 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:66958799 original size:71 final size:71
Alignment explanation
Indices: 66958683--66958834 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 71
66958673 GAGGAAGTGA
** * *
66958683 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCATATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
66958748 GTTATC
66 GTTATC
*
66958754 AAAAGGGCTTACACCCCAGTTATTAAAGGGCATATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCATATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
66958819 GTTATT
66 GTTATC
66958825 AAAAGAGGCT
1 AAAAG-GGCT
66958835 AGGCCTGCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 70 0.95
72 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACACCCCAGTTATTAAAGGGCATATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:66959077 original size:31 final size:31
Alignment explanation
Indices: 66959042--66959105 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66959032 CGTTTACAGT
*
66959042 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
66959073 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
66959104 AA
1 AA
66959106 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:66972908 original size:42 final size:44
Alignment explanation
Indices: 66972841--66972963 Score: 117
Period size: 44 Copynumber: 2.8 Consensus size: 44
66972831 TTAAATATCA
* * * *
66972841 ATGCCATTGTCCCAGACAGGGTCTTACACAAAATCAT-ATA-CG
1 ATGCCAATGTCCCAAACATGGTCTTACACAAAATCATCAAATCG
* **
66972883 ATGCCAATGTCCCAAACATGCTCTTACATGTAAATC-TCAAATCG
1 ATGCCAATGTCCCAAACATGGTCTTACA-CAAAATCATCAAATCG
** * *
66972927 ATGCCAACATCCCAAACGTGGTCTTACACGAAATCAT
1 ATGCCAATGTCCCAAACATGGTCTTACACAAAATCAT
66972964 GTACTAAAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 25 0.39
43 12 0.19
44 27 0.42
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACACAAAATCATCAAATCG
Found at i:66973854 original size:21 final size:19
Alignment explanation
Indices: 66973823--66973868 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
66973813 AATGCATGGC
* *
66973823 TATTTCATGTTTATTTTATT
1 TATTACATG-TTATTTTACT
66973843 TAATTACATGTTATTTTACT
1 T-ATTACATGTTATTTTACT
66973863 TATTAC
1 TATTAC
66973869 TATTTTAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 11 0.48
21 7 0.30
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (19 bp):
TATTACATGTTATTTTACT
Found at i:66974086 original size:13 final size:13
Alignment explanation
Indices: 66974068--66974092 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66974058 ACAAACAATA
66974068 AAATTTTCACACG
1 AAATTTTCACACG
66974081 AAATTTTCACAC
1 AAATTTTCACAC
66974093 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:66977923 original size:23 final size:23
Alignment explanation
Indices: 66977897--66977969 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
66977887 TCTATCAAGT
66977897 TGAAACAGTATGCTCATACGAGC
1 TGAAACAGTATGCTCATACGAGC
*
66977920 TGAAACAGTAAGCTCTAATA--AGC
1 TGAAACAGTATGCTC--ATACGAGC
* * *
66977943 TAAAAATAGTATGCTCTTACGAGC
1 T-GAAACAGTATGCTCATACGAGC
66977967 TGA
1 TGA
66977970 TATATCAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
22 2 0.05
23 19 0.49
24 15 0.38
25 3 0.08
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (23 bp):
TGAAACAGTATGCTCATACGAGC
Found at i:66980564 original size:16 final size:16
Alignment explanation
Indices: 66980538--66980582 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
66980528 ATTATGTTTC
66980538 ATTTC-TTTTTATTTT
1 ATTTCTTTTTTATTTT
*
66980553 ATTTCTTTTTTAGTTT
1 ATTTCTTTTTTATTTT
66980569 ATTT-TATTTTTATT
1 ATTTCT-TTTTTATT
66980583 AATATTAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 6 0.23
16 20 0.77
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (16 bp):
ATTTCTTTTTTATTTT
Found at i:66983140 original size:21 final size:21
Alignment explanation
Indices: 66983101--66983141 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
66983091 GCATAAAGTG
* *
66983101 TAAAGGTCTTGAATTGATAGC
1 TAAAGGTCTTAAATAGATAGC
*
66983122 TAAAGGTGTTAAATAGATAG
1 TAAAGGTCTTAAATAGATAG
66983142 AGAACCTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (21 bp):
TAAAGGTCTTAAATAGATAGC
Found at i:66992528 original size:22 final size:22
Alignment explanation
Indices: 66992500--66992623 Score: 74
Period size: 22 Copynumber: 5.4 Consensus size: 22
66992490 CTTACACATA
*
66992500 TATCACATTAACCATTCAGCCT
1 TATCACATTAGCCATTCAGCCT
* *
66992522 TATCACATGTATGCACTTTCA-CAT
1 TATCACAT-TA-GC-CATTCAGCCT
* *
66992546 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAGCCATTCAGCCT
*
66992569 TATCACATATA-CACACTTTCA-CAT
1 TATCACAT-TAGC-CA--TTCAGCCT
* *
66992593 TCATCACATTGGCCATTCGGCCT
1 T-ATCACATTAGCCATTCAGCCT
66992616 TATCACAT
1 TATCACAT
66992624 ATACACACTT
Statistics
Matches: 77, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
22 30 0.39
23 13 0.17
24 11 0.14
25 23 0.30
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (22 bp):
TATCACATTAGCCATTCAGCCT
Found at i:66992552 original size:47 final size:47
Alignment explanation
Indices: 66992456--66992658 Score: 277
Period size: 47 Copynumber: 4.3 Consensus size: 47
66992446 TGCACACTTT
* * * *
66992456 TCACAATTGGTCATTTGGCCTTATCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
** * * **
66992502 TCACATTAACCATTCAGCCTTATCACATGTATGCACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
66992549 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
66992596 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
66992643 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
66992659 ATCTTAAGCT
Statistics
Matches: 140, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
45 20 0.14
46 5 0.04
47 115 0.82
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
Found at i:66996439 original size:10 final size:10
Alignment explanation
Indices: 66996421--66996450 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
66996411 GACAATGATT
*
66996421 TTATTATATG
1 TTATAATATG
66996431 TTATAATATG
1 TTATAATATG
66996441 TTATAATATG
1 TTATAATATG
66996451 CCTTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (10 bp):
TTATAATATG
Found at i:66999092 original size:31 final size:31
Alignment explanation
Indices: 66999045--66999252 Score: 337
Period size: 31 Copynumber: 6.7 Consensus size: 31
66999035 TTAGTCTTGA
* *
66999045 CATAT-ACTGGGTCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
66999075 CATATCACTGAGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
66999106 CATATCACTAGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
66999137 CATATCACTGGGACGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
66999168 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
66999199 CATATCACTGGGCTGAAACCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
66999230 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
66999253 ACTGTAAACG
Statistics
Matches: 163, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
30 5 0.03
31 158 0.97
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:66999323 original size:42 final size:42
Alignment explanation
Indices: 66999276--66999367 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
66999266 TGGCCCTTAG
*
66999276 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
66999318 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
66999360 GCCCATTT
1 GCCCATTT
66999368 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:66999544 original size:25 final size:24
Alignment explanation
Indices: 66999491--66999585 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 24
66999481 TTTATCATAT
* *
66999491 AACTGGAGGCCAAGCCTCTTTTAAT-
1 AACTGG-GGCAAAGCC-CTTTTGATA
66999516 AACTGGGGCAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTT-TGATA
* *
66999541 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTT-GATA
* *
66999566 AACTGGGGTAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
66999586 AGCACTTCCT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
23 4 0.07
24 12 0.20
25 44 0.73
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTTGATA
Found at i:67000425 original size:27 final size:27
Alignment explanation
Indices: 67000395--67000459 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
67000385 GGGCATATTC
67000395 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
67000422 GTCACTTTACCCTATAAGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
67000449 GTCTTTTTACC
1 GTCATTTTACC
67000460 TTTAGGGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:67000542 original size:27 final size:27
Alignment explanation
Indices: 67000516--67000645 Score: 102
Period size: 27 Copynumber: 4.7 Consensus size: 27
67000506 ATCTACAAAC
*
67000516 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
67000543 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
**
67000572 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** **
67000599 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *
67000626 TAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTCAGTAATTT
67000646 CACAAACCAG
Statistics
Matches: 85, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.01
27 59 0.69
28 7 0.08
29 17 0.20
30 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:67000650 original size:27 final size:27
Alignment explanation
Indices: 67000575--67000725 Score: 194
Period size: 27 Copynumber: 5.6 Consensus size: 27
67000565 AGAAAGTCAA
* ** *
67000575 GGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *
67000602 GGGTATTTTGGTAATTTTACAAATTAA
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
67000629 GGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
67000656 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
67000683 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
67000710 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
67000726 CTATCCTACA
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:67000661 original size:54 final size:54
Alignment explanation
Indices: 67000492--67000758 Score: 187
Period size: 54 Copynumber: 4.9 Consensus size: 54
67000482 CATCCTACAA
* * * * * *** *
67000492 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAG
* * * * ** *** **
67000546 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTCACAAACCAG
*
67000602 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAG
* * * * * * *
67000656 TGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAG
* ** * *
67000710 GGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTA-CAAACTAAGGGTATTTCGGTAATTTCACAA
67000759 TTGAGGGTAA
Statistics
Matches: 167, Mismatches: 41, Indels: 10
0.77 0.19 0.05
Matches are distributed among these distances:
54 113 0.68
55 20 0.12
56 34 0.20
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAG
Found at i:67000742 original size:81 final size:81
Alignment explanation
Indices: 67000599--67000758 Score: 209
Period size: 81 Copynumber: 2.0 Consensus size: 81
67000589 TTTTGTAAAT
* *
67000599 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTT
*
67000664 C-GATAATTTTACAAAC
66 CAG-TAATTTCACAAAC
* * **
67000680 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAA-TTCTATCCTA-CAGGGGTAT
1 TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTC-A-CAAACCAGGGGTAT
67000743 TTCAGTAATTTCACAA
64 TTCAGTAATTTCACAA
67000759 TTGAGGGTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
80 3 0.04
81 63 0.91
82 3 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTT
CAGTAATTTCACAAAC
Found at i:67000790 original size:27 final size:26
Alignment explanation
Indices: 67000746--67000840 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
67000736 GGGGTATTTC
* * *
67000746 AGTAATTTCACAATTGAGGGTAAAAT
1 AGTAATTTTATAAATGAGGGTAAAAT
*
67000772 AGTAATTTTGTAAACTGAGGGTAAAAT
1 AGTAATTTTATAAA-TGAGGGTAAAAT
*
67000799 GGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTTTATAAAT-GAGGGTAAAAT
*
67000826 -GATAATTCTATAAAT
1 AG-TAATTTTATAAAT
67000841 CGAAGGTACT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.20
27 47 0.80
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.34
Consensus pattern (26 bp):
AGTAATTTTATAAATGAGGGTAAAAT
Found at i:67000841 original size:27 final size:27
Alignment explanation
Indices: 67000761--67000848 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
67000751 TTTCACAATT
*
67000761 GAGGGTAAAAT-AGTAATTTTGTAAA-C
1 GAGGGTAAAATGA-TAATTTTATAAATC
*
67000787 TGAGGGTAAAATGGTAATTTTATAAATC
1 -GAGGGTAAAATGATAATTTTATAAATC
*
67000815 GAGGGTAAAATGATAATTCTATAAATC
1 GAGGGTAAAATGATAATTTTATAAATC
*
67000842 GAAGGTA
1 GAGGGTA
67000849 CTTTGGTAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.31
Consensus pattern (27 bp):
GAGGGTAAAATGATAATTTTATAAATC
Found at i:67006029 original size:45 final size:45
Alignment explanation
Indices: 67005978--67006068 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
67005968 TATATACACA
67005978 TAGTTAAAAACCACTTTAATAAAAATTAAATCACCCATCTTCAAG
1 TAGTTAAAAACCACTTTAATAAAAATTAAATCACCCATCTTCAAG
* * *
67006023 TAGTTAAAAACCACTTTAATAAAACTTAAATTACTCATCTTCAAG
1 TAGTTAAAAACCACTTTAATAAAAATTAAATCACCCATCTTCAAG
67006068 T
1 T
67006069 GGAAATTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (45 bp):
TAGTTAAAAACCACTTTAATAAAAATTAAATCACCCATCTTCAAG
Found at i:67007235 original size:10 final size:10
Alignment explanation
Indices: 67007217--67007246 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
67007207 GAGAATGATT
*
67007217 TTATTATATG
1 TTATAATATG
67007227 TTATAATATG
1 TTATAATATG
67007237 TTATAATATG
1 TTATAATATG
67007247 CCTTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (10 bp):
TTATAATATG
Found at i:67012231 original size:29 final size:29
Alignment explanation
Indices: 67012197--67012270 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
67012187 TTATTCAAAT
* **
67012197 GGCCCAGTTCATATTCTTATGGCCCACTA
1 GGCCCAATTCATATTAATATGGCCCACTA
** *
67012226 GGCCCAATTCACCTTAATATGGCCCATTA
1 GGCCCAATTCATATTAATATGGCCCACTA
*
67012255 GGCCCAAATCATATTA
1 GGCCCAATTCATATTA
67012271 TACTCATGCT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
GGCCCAATTCATATTAATATGGCCCACTA
Found at i:67012507 original size:24 final size:24
Alignment explanation
Indices: 67012475--67012526 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
67012465 ATAGCCCAAA
* *
67012475 TTTTGGCTTTTCGACATTTTAGCT
1 TTTTAGCTTTTCGACATTTCAGCT
**
67012499 TTTTAGCTTTTCGGTATTTCAGCT
1 TTTTAGCTTTTCGACATTTCAGCT
67012523 TTTT
1 TTTT
67012527 CCGATTCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (24 bp):
TTTTAGCTTTTCGACATTTCAGCT
Found at i:67015752 original size:14 final size:14
Alignment explanation
Indices: 67015732--67015766 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
67015722 ATTTAAACAT
*
67015732 AATATATATTTATA
1 AATATATATGTATA
*
67015746 TATATATATGTATA
1 AATATATATGTATA
67015760 AATATAT
1 AATATAT
67015767 CAAGTAGTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (14 bp):
AATATATATGTATA
Found at i:67017992 original size:10 final size:10
Alignment explanation
Indices: 67017974--67018003 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
67017964 GAGAATGATT
*
67017974 TTATTATATG
1 TTATAATATG
67017984 TTATAATATG
1 TTATAATATG
67017994 TTATAATATG
1 TTATAATATG
67018004 CCTTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (10 bp):
TTATAATATG
Found at i:67021919 original size:23 final size:23
Alignment explanation
Indices: 67021862--67021966 Score: 75
Period size: 23 Copynumber: 4.5 Consensus size: 23
67021852 CTTATCAAAG
* * *
67021862 TATGCCACAAGGGCCAAATAGAA
1 TATGCCATAAAGGCTAAATAGAA
** * *
67021885 TACACCACAAAGGCTAAATAGAT
1 TATGCCATAAAGGCTAAATAGAA
* * *
67021908 TATGCCATAAAGACCAGATAGAA
1 TATGCCATAAAGGCTAAATAGAA
* * *
67021931 GTATGCCAGAAAGGCTATATTGAA
1 -TATGCCATAAAGGCTAAATAGAA
*
67021955 TATGCCTTAAAG
1 TATGCCATAAAG
67021967 CAATTACTAC
Statistics
Matches: 62, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
23 44 0.71
24 18 0.29
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.20
Consensus pattern (23 bp):
TATGCCATAAAGGCTAAATAGAA
Found at i:67026122 original size:47 final size:44
Alignment explanation
Indices: 67026054--67026316 Score: 179
Period size: 47 Copynumber: 5.6 Consensus size: 44
67026044 TTTGTGGGCT
*
67026054 AGTGTAAGACATGTCTGGGACATGTATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGA-AGCC
* * * *
67026100 AGTGTAAGACCATGTCTGGGACATGACATCGG-TATTGAGATGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCA--CATATG-AAGCC
* * * * *
67026148 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATG-AAGCC
* * * * * *
67026194 AGTGTAAGACATGTATGGGACATGCATCAGCTACAAGATAATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATGA-AGCC
* * * *
67026240 AGTGTAAGACCATGTCTGGGACATGGAATCGACTTGAGATATGAA-CC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--CACATATGAAGCC
67026287 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
67026317 AGCATCTTAC
Statistics
Matches: 172, Mismatches: 33, Indels: 23
0.75 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 65 0.38
47 73 0.42
48 26 0.15
49 6 0.03
50 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAAGCC
Found at i:67026309 original size:140 final size:141
Alignment explanation
Indices: 67026054--67026316 Score: 340
Period size: 140 Copynumber: 1.9 Consensus size: 141
67026044 TTTGTGGGCT
* * * ** *
67026054 AGTGTAAGACATGTCTGGGACATGTATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTATGGGACATGCATCAGCCACAAGATAAGAGCCAGTGTAAGACCATGTCTGG
*
67026119 GACATGACATCGGTATTGAGATGAAAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCG
66 GACATGACATCGGTATTGAGATGAAAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCG
67026183 AGACGTAAACC
131 AGACGTAAACC
* * *
67026194 AGTGTAAGACATGTATGGGACATGCATCAGCTACAAGATAATAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTATGGGACATGCATCAGCCACAAGATAAGAGCCAGTGTAAGACCATGTCTGG
*
67026259 GACATGGA-ATC-G-ACTTGAGAT-ATGAA-CCAGTGTAAGACCATGTCTGGGACATGGCATC
66 GACAT-GACATCGGTA-TTGAGATGA--AAGCCAGTGTAAGA-CATGTCTAGGACATGGCATC
67026317 AGCATCTTAC
Statistics
Matches: 106, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
138 2 0.02
139 18 0.17
140 79 0.75
141 7 0.07
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTATGGGACATGCATCAGCCACAAGATAAGAGCCAGTGTAAGACCATGTCTGG
GACATGACATCGGTATTGAGATGAAAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCG
AGACGTAAACC
Done.