Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 207 of 290
Found at i:67029355 original size:27 final size:27
Alignment explanation
Indices: 67029325--67029436 Score: 181
Period size: 27 Copynumber: 4.1 Consensus size: 27
67029315 TGACAAAGTG
67029325 ACCAGATACAGATA-TTGTGGCAGAGCC
1 ACCAGA-ACAGATATTTGTGGCAGAGCC
* *
67029352 ACCAGAACAGATGTTTGTGGCAGACCC
1 ACCAGAACAGATATTTGTGGCAGAGCC
67029379 ACCAGAACAGATATTTGTGGCAGAGCC
1 ACCAGAACAGATATTTGTGGCAGAGCC
*
67029406 ACCAGAACAGATATTTGTAGCAGAGCC
1 ACCAGAACAGATATTTGTGGCAGAGCC
67029433 ACCA
1 ACCA
67029437 AAACGCTTCC
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATATTTGTGGCAGAGCC
Found at i:67039461 original size:27 final size:27
Alignment explanation
Indices: 67039430--67039607 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
67039420 TAAATTGTAC
67039430 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
67039457 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67039482 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
67039511 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67039539 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67039566 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67039593 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67039608 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 4 0.03
27 99 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67039571 original size:82 final size:81
Alignment explanation
Indices: 67039431--67039586 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
67039421 AAATTGTACA
* *
67039431 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
67039496 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
**
67039512 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCACTAAG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCACTAAG
*
67039575 TGTGCGAGTTGA
63 TGTGCGAATTGA
67039587 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 15 0.22
82 48 0.72
83 1 0.01
84 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67039598 original size:82 final size:81
Alignment explanation
Indices: 67039427--67039607 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
67039417 GATTAAATTG
* *
67039427 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
67039492 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * **
67039508 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCAC
* **
67039571 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
67039590 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67039608 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 17 0.20
82 63 0.75
83 1 0.01
84 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67041083 original size:8 final size:8
Alignment explanation
Indices: 67041066--67041098 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
67041056 TCACAAAATG
67041066 TCGGCTTT
1 TCGGCTTT
*
67041074 TCGGCATT
1 TCGGCTTT
67041082 TCGGCTTT
1 TCGGCTTT
67041090 TCGGCTTT
1 TCGGCTTT
67041098 T
1 T
67041099 GCCGATCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.03, C:0.24, G:0.24, T:0.48
Consensus pattern (8 bp):
TCGGCTTT
Found at i:67048500 original size:47 final size:45
Alignment explanation
Indices: 67048432--67048698 Score: 184
Period size: 47 Copynumber: 5.7 Consensus size: 45
67048422 TTTGTGGGCT
67048432 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACA-TATGA-AGCC
* * * * ** *
67048478 AGTGTAAGACCATGTCTGGGACATGGCATTGG-TATTGAGACCAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCA--CATATGA-AGCC
* * * *
67048526 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-ATATG-AAGCC
* * * *
67048572 AGTGTAAGACATGTATGGGACAT-GCATCGGCTACGAGATGATTAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCAC-ATATGA--AGCC
* * * *
67048619 AATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAA-CC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC--CACATATGAAGCC
*
67048666 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
67048699 ACCTTACCCA
Statistics
Matches: 178, Mismatches: 30, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
45 1 0.01
46 56 0.31
47 72 0.40
48 35 0.20
49 8 0.04
50 5 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACATATGAAGCC
Found at i:67051015 original size:47 final size:49
Alignment explanation
Indices: 67050941--67051107 Score: 159
Period size: 49 Copynumber: 3.5 Consensus size: 49
67050931 AGATGCCGGC
* * *
67050941 GTCATGTCCTAGACATGGTCTTACACTGGCTAGCATAT-T-AAAGTCGAT
1 GTCATGTCCCAGACA-GGTCTTACACTGACTAGCATATATCAAAGCCGAT
** ** *
67050989 GTTGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAAGCCGAT
1 GTCATGTCCCAGACAGGTCTTACACTGACTAGCATATATCAAAGCCGAT
* *
67051038 GTCATGTCCCAGACAGGTCTTACACTGAC-A-CACA-A-C-AAGCTGAT
1 GTCATGTCCCAGACAGGTCTTACACTGACTAGCATATATCAAAGCCGAT
* * *
67051082 GCCATGTCCTAGACAAGTCTTACACT
1 GTCATGTCCCAGACAGGTCTTACACT
67051108 AGCTTGTATA
Statistics
Matches: 101, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
44 30 0.30
45 1 0.01
46 1 0.01
47 22 0.22
48 13 0.13
49 34 0.34
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (49 bp):
GTCATGTCCCAGACAGGTCTTACACTGACTAGCATATATCAAAGCCGAT
Found at i:67051052 original size:49 final size:47
Alignment explanation
Indices: 67050941--67051201 Score: 171
Period size: 48 Copynumber: 5.6 Consensus size: 47
67050931 AGATGCCGGC
* * ** * *
67050941 GTCATGTCCTAGACATGGTCTTACACTGGCTAGCATATTAAAGTCGAT
1 GTCATGTCCCAGACA-GGTCTTACACTGACTTTCATATTCAAGCCGAT
**
67050989 GTTGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAAGCCGAT
1 GTCATGTCCCAGACAGGTCTTACACTGACTTTCATAT-TC-AAGCCGAT
* * * *
67051038 GTCATGTCCCAGACAGGTCTTACACTGAC--ACACA-ACAAGCTGAT
1 GTCATGTCCCAGACAGGTCTTACACTGACTTTCATATTCAAGCCGAT
* * * * * **
67051082 GCCATGTCCTAGACAAGTCTTACACT-AGCTTGT-ATATCCTGAGGCTAAT
1 GTCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATAT--TCAAGCCGAT
* * *
67051131 G-CATGTCCCAGACATGTCTTACACT-AGCTCTCAT-CTCAATGCCGAT
1 GTCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATTCAA-GCCGAT
*
67051177 G-CATGTCCCAGACATGTCTTACACT
1 GTCATGTCCCAGACAGGTCTTACACT
67051202 AGCTCACATA
Statistics
Matches: 171, Mismatches: 31, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 3 0.02
46 31 0.18
47 23 0.13
48 41 0.24
49 41 0.24
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (47 bp):
GTCATGTCCCAGACAGGTCTTACACTGACTTTCATATTCAAGCCGAT
Found at i:67055701 original size:13 final size:13
Alignment explanation
Indices: 67055683--67055711 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67055673 GACACACGGG
67055683 CGTGTCAATTGGC
1 CGTGTCAATTGGC
67055696 CGTGTCAATTGGC
1 CGTGTCAATTGGC
67055709 CGT
1 CGT
67055712 CTGTGGCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.24, G:0.31, T:0.31
Consensus pattern (13 bp):
CGTGTCAATTGGC
Found at i:67060829 original size:48 final size:48
Alignment explanation
Indices: 67060586--67060853 Score: 217
Period size: 48 Copynumber: 5.6 Consensus size: 48
67060576 GAGTCCCGTA
* * * * * *
67060586 TAAGACCATATCTGGGATATGGCATCGGCATTGATATATGATCCCATA
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
* * * *
67060634 TAATATCATGTCTGGGACATGGCATTGGCATCGTTATGTGATCCCATA
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
* * * *
67060682 TCAGACCATGTCTGGGACATGGCATTGGCATCGATATGAG-TACATCGTG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGAT-C-CCATG
* * * *
67060731 TAAGACCATAGT-TGGG-CTATCAGC-TTCG-AT-G-TGTGTGATCCTATG
1 TAAGACCAT-GTCTGGGAC-AT-GGCATTGGCATCGATATGTGATCCCATG
* **
67060776 TAAGACCATGTCTAGGACATGGCATTGGCATCGATATGTGGCCCCATG
1 TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
* * * *
67060824 TAAGACCATATCCGAGATATGGCATTGGCA
1 TAAGACCATGTCTGGGACATGGCATTGGCA
67060854 CCCTACTATG
Statistics
Matches: 172, Mismatches: 36, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 4 0.02
45 19 0.11
46 8 0.05
47 4 0.02
48 114 0.66
49 19 0.11
50 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGATCCCATG
Found at i:67069980 original size:39 final size:39
Alignment explanation
Indices: 67069936--67070014 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
67069926 AACTAACCTA
* *
67069936 AGAATGCAAATTAAATGATAGAAAAATGACAGATAGTTC
1 AGAATGCAAATTAAATGATAGAAAAATGAAAGATAATTC
*
67069975 AGAATGTAAATTAAATGATAGAAAAATGAAAGATAATTC
1 AGAATGCAAATTAAATGATAGAAAAATGAAAGATAATTC
67070014 A
1 A
67070015 AAAGATATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.24
Consensus pattern (39 bp):
AGAATGCAAATTAAATGATAGAAAAATGAAAGATAATTC
Found at i:67070380 original size:13 final size:13
Alignment explanation
Indices: 67070348--67070388 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
67070338 GCATGTGGGT
67070348 TCACACGGTCGTG
1 TCACACGGTCGTG
*
67070361 TTACACGGTCGTG
1 TCACACGGTCGTG
* *
67070374 TCGCACGGCCGTG
1 TCACACGGTCGTG
67070387 TC
1 TC
67070389 TAGCTTCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (13 bp):
TCACACGGTCGTG
Found at i:67078411 original size:19 final size:20
Alignment explanation
Indices: 67078389--67078430 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
67078379 ATTCACATGC
67078389 AATAATA-AAACTTTATCTT
1 AATAATATAAACTTTATCTT
67078408 AATAATATAAACTTTATCTT
1 AATAATATAAACTTTATCTT
67078428 AAT
1 AAT
67078431 CGGTTTACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.43
Consensus pattern (20 bp):
AATAATATAAACTTTATCTT
Found at i:67080151 original size:19 final size:19
Alignment explanation
Indices: 67080129--67080172 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
67080119 AATTTTAAAT
67080129 TATTTTAGGAAACTTT-TTA
1 TATTTTA-GAAACTTTATTA
*
67080148 TATTTTAGAAAGTTTATTA
1 TATTTTAGAAACTTTATTA
67080167 T-TTTTA
1 TATTTTA
67080173 AAATTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (19 bp):
TATTTTAGAAACTTTATTA
Found at i:67080558 original size:9 final size:9
Alignment explanation
Indices: 67080541--67080571 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
67080531 GTTGAATTTC
67080541 ATAATTCGA
1 ATAATTCGA
*
67080550 ATAACTCGA
1 ATAATTCGA
67080559 ATAATTCGA
1 ATAATTCGA
67080568 ATAA
1 ATAA
67080572 GATATTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (9 bp):
ATAATTCGA
Found at i:67080691 original size:19 final size:20
Alignment explanation
Indices: 67080653--67080700 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
67080643 ATTACAAAAT
*
67080653 AATTCAAAATAATTTTTAAA
1 AATTCAAAATAATTTATAAA
67080673 AATTCAAAAT-ATTTATAAA
1 AATTCAAAATAATTTATAAA
67080692 AATTTCAAA
1 AA-TTCAAA
67080701 TTTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTCAAAATAATTTATAAA
Found at i:67080705 original size:18 final size:18
Alignment explanation
Indices: 67080653--67080707 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
67080643 ATTACAAAAT
*
67080653 AATTCAAAATAATTTTTAAA
1 AATTCAAAAT--TTTATAAA
67080673 AATTCAAAATATTTATAAA
1 AATTCAAAAT-TTTATAAA
67080692 AATTTC-AAATTTTATA
1 AA-TTCAAAATTTTATA
67080708 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
18 6 0.18
19 14 0.42
20 13 0.39
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTCAAAATTTTATAAA
Found at i:67082241 original size:47 final size:49
Alignment explanation
Indices: 67082188--67082283 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
67082178 TTTTCTTGAT
67082188 TTTTACATAAACTTTTAAT-AA-ATATATATATTACATTTGCATTGTGA
1 TTTTACATAAACTTTTAATAAATATATATATATTACATTTGCATTGTGA
67082235 TTTTACATAAACTTTTAATAAATATATATATATTACATTTGCATTGTGA
1 TTTTACATAAACTTTTAATAAATATATATATATTACATTTGCATTGTGA
67082284 GCCGTGGTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 19 0.40
48 2 0.04
49 26 0.55
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (49 bp):
TTTTACATAAACTTTTAATAAATATATATATATTACATTTGCATTGTGA
Found at i:67086656 original size:15 final size:15
Alignment explanation
Indices: 67086636--67086682 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
67086626 GTTTCTATAC
*
67086636 TTTAATTTAATTATT
1 TTTAATTTAATAATT
67086651 TTTAATATT-ATAATT
1 TTTAAT-TTAATAATT
67086666 TTTAAATTTAA-AATT
1 TTT-AATTTAATAATT
67086681 TT
1 TT
67086683 AGTTCTCACC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 22 0.79
16 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAATTTAATAATT
Found at i:67095040 original size:40 final size:39
Alignment explanation
Indices: 67094996--67095100 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
67094986 AGTGACCATA
*
67094996 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
67095036 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
67095074 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
67095101 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67095057 original size:39 final size:40
Alignment explanation
Indices: 67094959--67095100 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
67094949 AATGATGTCT
* * *
67094959 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
67094999 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
67095039 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
67095078 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
67095101 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:67095119 original size:79 final size:80
Alignment explanation
Indices: 67094959--67095106 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
67094949 AATGATGTCT
* **
67094959 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
67095024 CGAGATACTAATTCC
66 CGAGATACTAATTCC
* * * * *
67095039 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
67095101 AACGAG
64 AACGAG
67095107 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAATTCC
Found at i:67095476 original size:47 final size:47
Alignment explanation
Indices: 67095325--67095537 Score: 331
Period size: 46 Copynumber: 4.6 Consensus size: 47
67095315 AAGGGTTGGT
67095325 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67095371 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67095417 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
67095464 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67095511 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67095538 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
45 7 0.05
46 74 0.48
47 72 0.47
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67097779 original size:40 final size:40
Alignment explanation
Indices: 67097511--67097768 Score: 464
Period size: 40 Copynumber: 6.5 Consensus size: 40
67097501 GAGAATTGAG
67097511 AGTGATATATCCGGGCTAAG-CCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
67097550 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
67097590 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
67097630 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
67097670 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
67097710 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
67097750 AGTAATATATCCGTGCTAA
1 AGTGATATATCCGGGCTAA
67097769 ACCTCGAAGA
Statistics
Matches: 212, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 20 0.09
40 192 0.91
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:67101796 original size:40 final size:39
Alignment explanation
Indices: 67101752--67101828 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
67101742 AGTGACCATA
*
67101752 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
67101792 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTA
67101829 TAACCGGGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 24 0.71
40 10 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:67101813 original size:39 final size:40
Alignment explanation
Indices: 67101715--67101856 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
67101705 AATGATGTCT
* * *
67101715 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
67101755 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
67101795 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
* *
67101834 GGGCTATGTCCCGAAGGTATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
67101857 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
39 34 0.39
40 42 0.48
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:67101870 original size:40 final size:39
Alignment explanation
Indices: 67101765--67101863 Score: 101
Period size: 39 Copynumber: 2.5 Consensus size: 39
67101755 GGACTAAGAT
** * *
67101765 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGC
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGCTAAGC
** *
67101804 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAG-C
*
67101844 CCGAAGGTATTTGAACGAGT
1 CCGAAGGCATTTGAACGAGT
67101864 AGCTATATCC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.63
40 19 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGC
Found at i:67101875 original size:79 final size:80
Alignment explanation
Indices: 67101715--67101862 Score: 176
Period size: 79 Copynumber: 1.9 Consensus size: 80
67101705 AATGATGTCT
* **
67101715 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
67101780 CGAGATACTAATTCC
66 CGAGATACTAATTCC
* * * * * *
67101795 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGTATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
67101857 AACGAG
64 AACGAG
67101863 TAGCTATATC
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.02
79 41 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAATTCC
Found at i:67102149 original size:47 final size:47
Alignment explanation
Indices: 67102080--67102341 Score: 425
Period size: 47 Copynumber: 5.6 Consensus size: 47
67102070 AAAGGTTGGT
67102080 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
67102127 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCGGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67102174 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
67102221 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGACGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
67102268 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67102315 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67102342 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 199 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67106111 original size:41 final size:41
Alignment explanation
Indices: 67106054--67106140 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 41
67106044 TTGTTATTAC
67106054 AGTGATGCATTATTAAATGGGATTAGATTGTGATTTGATGT
1 AGTGATGCATTATTAAATGGGATTAGATTGTGATTTGATGT
* *
67106095 AGTGATGTATTATTAAATGGGATTAGATTGTGATTTTATGT
1 AGTGATGCATTATTAAATGGGATTAGATTGTGATTTGATGT
67106136 AGTGA
1 AGTGA
67106141 GACAAAGTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.30, C:0.01, G:0.26, T:0.43
Consensus pattern (41 bp):
AGTGATGCATTATTAAATGGGATTAGATTGTGATTTGATGT
Found at i:67111965 original size:38 final size:39
Alignment explanation
Indices: 67111857--67112111 Score: 354
Period size: 39 Copynumber: 6.5 Consensus size: 39
67111847 ACAAAGCATG
* * * *
67111857 CGGGACTTTAAGCCCGAATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
67111897 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
67111937 CGGGGCTTAGCTC-GATATAACACGAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67111975 CGGGGCTTAGCCCGGATATAACACCAGCACG-ATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67112013 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
67112052 CGAGACTTAGCCGGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67112091 CGGGACTTAGCCTGGATATAA
1 CGGGACTTAGCCCGGATATAA
67112112 TTCTCCATTA
Statistics
Matches: 198, Mismatches: 14, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
38 72 0.36
39 106 0.54
40 20 0.10
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:67111986 original size:77 final size:77
Alignment explanation
Indices: 67111874--67112111 Score: 327
Period size: 77 Copynumber: 3.1 Consensus size: 77
67111864 TTAAGCCCGA
* * * *
67111874 ATATAATACCAGCAC-AAAGCCTACGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 ATATAACACCAGCACGAATGCCTTCGAGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTTC
*
67111938 GGGGCTTAGCTCG
65 GGGACTTAGCTCG
* * *
67111951 ATATAACACGAGCACGAATGCCTTCGGGGCTTAGCCCGGATATAACACCAGCACG-ATGCCTTCG
1 ATATAACACCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCG
* *
67112015 AGACTTAGCCCGG
66 GGACTTAGCTC-G
*
67112028 ATATAACACCAGCACGAATGCCTTCGAGACTTAGCCGGGATATAACACCAGCACGAATGCCTTCG
1 ATATAACACCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCG
*
67112093 GGACTTAGCCTGG
66 GGACTTAG-CTCG
67112106 ATATAA
1 ATATAA
67112112 TTCTCCATTA
Statistics
Matches: 142, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
76 17 0.12
77 90 0.63
78 34 0.24
79 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.19
Consensus pattern (77 bp):
ATATAACACCAGCACGAATGCCTTCGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCG
GGACTTAGCTCG
Found at i:67114204 original size:15 final size:16
Alignment explanation
Indices: 67114177--67114206 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67114167 AGGGCTATTA
67114177 CACATATTATGTTAAC
1 CACATATTATGTTAAC
67114193 CACATA-TATGTTAA
1 CACATATTATGTTAA
67114207 GTAGTTGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.37
Consensus pattern (16 bp):
CACATATTATGTTAAC
Found at i:67117053 original size:29 final size:29
Alignment explanation
Indices: 67116986--67117093 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 29
67116976 TTCACATACC
* * *
67116986 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* * *
67117014 T-TCATAGGGCCCATTAGTCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
* *
67117043 TGTATATGGCCTATCAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
67117072 TTTATATGGCCCACTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
67117094 GTCACATTCA
Statistics
Matches: 62, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
27 1 0.02
28 15 0.24
29 45 0.73
30 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:67121952 original size:18 final size:18
Alignment explanation
Indices: 67121931--67121965 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67121921 GAGGCATTAA
67121931 CAAACAAAAACACATTTT
1 CAAACAAAAACACATTTT
**
67121949 CAAACAACCACACATTT
1 CAAACAAAAACACATTT
67121966 ATACAAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (18 bp):
CAAACAAAAACACATTTT
Found at i:67122065 original size:17 final size:19
Alignment explanation
Indices: 67122029--67122074 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
67122019 TGATTTTTTT
*
67122029 AATCATAATATAATATATA
1 AATCATAATATAAAATATA
67122048 AATCAT-AT-TAAAATATA
1 AATCATAATATAAAATATA
67122065 AATCAATAAT
1 AATC-ATAAT
67122075 GAACCTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 12 0.50
18 4 0.17
19 8 0.33
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (19 bp):
AATCATAATATAAAATATA
Found at i:67130066 original size:55 final size:54
Alignment explanation
Indices: 67129979--67130233 Score: 222
Period size: 55 Copynumber: 4.8 Consensus size: 54
67129969 ATTAGGGTTT
* *
67129979 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTATAAGGC
* * * *
67130034 AAGGATATCATGTAAGACCATGTCAAGACATGG-AATTGATAAGTTACTATATGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TATAAGGC
* * * * * *
67130089 AAATG-TCCCATGAAAGACCATGCCAAGGCATGGC-ATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGC
** * *
67130142 AAGGATACCATGTAAGACCATTTCGAGACATGGCAA-TGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGC
* * ** *
67130191 AAGGATACCACGTAAGGCCATGAAAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
67130234 GTACCCGTGT
Statistics
Matches: 161, Mismatches: 33, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
49 36 0.22
52 5 0.03
53 40 0.25
54 9 0.06
55 68 0.42
56 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTATAAGGC
Found at i:67133210 original size:18 final size:18
Alignment explanation
Indices: 67133189--67133223 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67133179 GAGGCATTAA
67133189 CAAACAAAAACACATTTT
1 CAAACAAAAACACATTTT
**
67133207 CAAACAACCACACATTT
1 CAAACAAAAACACATTT
67133224 ATACAAGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (18 bp):
CAAACAAAAACACATTTT
Found at i:67135895 original size:28 final size:28
Alignment explanation
Indices: 67135863--67135927 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
67135853 ATTTACTAGA
*
67135863 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
67135891 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
67135919 ATACCCCTA
1 ATACCCCTA
67135928 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:67136074 original size:28 final size:27
Alignment explanation
Indices: 67136033--67136118 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
67136023 AGGAAGCGTC
67136033 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCAC-AA-TATCTGTAT
67136061 CTGGTGGC-ACTGCCACAATATCTGTAT
1 CTGGTGGCTA-TGCCACAATATCTGTAT
* * * * *
67136088 CTGGTGACTCTGTCACATTCTCTGTAT
1 CTGGTGGCTATGCCACAATATCTGTAT
67136115 CTGG
1 CTGG
67136119 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 7 0.14
27 29 0.58
28 14 0.28
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATATCTGTAT
Found at i:67136571 original size:19 final size:19
Alignment explanation
Indices: 67136547--67136585 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
67136537 TTTTAATTAT
* *
67136547 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
67136566 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
67136585 T
1 T
67136586 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:67150157 original size:76 final size:76
Alignment explanation
Indices: 67150071--67150224 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 76
67150061 GTAGAGTCTG
* *
67150071 ATTCAGAGTTGATAAAGATGATTTCTTGAGATTTTGAGATCAAATTTGTATTCTAAGAAATCCAG
1 ATTCAGAGTTGATAAAGATGATTTCTTGAGATTTTGAGATCAAATTTGTATTCCAAGAAATCAAG
67150136 AGTTAATTCAA
66 AGTTAATTCAA
* *
67150147 ATTCAGAGTTGATAAAGATGATTTCTTGAGATTTTGAGATCGAATTTGTATTCCGAGAAATCAAG
1 ATTCAGAGTTGATAAAGATGATTTCTTGAGATTTTGAGATCAAATTTGTATTCCAAGAAATCAAG
67150212 AGTTAATTCAA
66 AGTTAATTCAA
67150223 AT
1 AT
67150225 GATTCTAGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (76 bp):
ATTCAGAGTTGATAAAGATGATTTCTTGAGATTTTGAGATCAAATTTGTATTCCAAGAAATCAAG
AGTTAATTCAA
Found at i:67154752 original size:29 final size:28
Alignment explanation
Indices: 67154686--67154773 Score: 97
Period size: 29 Copynumber: 3.1 Consensus size: 28
67154676 AAATTTACAT
* * *
67154686 ACCTGTATCTGGCCCATTAAGCCCAATC
1 ACCTGTATATGGCCCATTAGGCCAAATC
**
67154714 ATAT-TCATATGGCCCATTAGGCTCAAATC
1 ACCTGT-ATATGGCCCATTAGGC-CAAATC
67154743 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGG-CCAAATC
67154772 AC
1 AC
67154774 ATTTAAATGG
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
27 1 0.02
28 16 0.33
29 30 0.61
30 2 0.04
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (28 bp):
ACCTGTATATGGCCCATTAGGCCAAATC
Found at i:67154783 original size:29 final size:28
Alignment explanation
Indices: 67154695--67154809 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
67154685 TACCTGTATC
* * *
67154695 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
* * *
67154723 TGGCCCATTAGGCTCAAATCACCTGTATA
1 TGGCCCATTAGGC-CCAATCACATTTATA
*
67154752 TGGCCCATTAGGCCCAAATCACATTTAAA
1 TGGCCCATTAGGCCC-AATCACATTTATA
* * * *
67154781 TGGACCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
67154809 T
1 T
67154810 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:67159275 original size:29 final size:29
Alignment explanation
Indices: 67159218--67159319 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
67159208 TACCTATATT
* * *
67159218 TGGCCCATTAAGCCC-AATCATATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
* * *
67159246 TGGCTCATTAGGCCCGAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
67159275 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
67159304 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
67159320 GTCACATTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 13 0.21
29 50 0.79
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATGTATA
Found at i:67159282 original size:57 final size:58
Alignment explanation
Indices: 67159209--67159318 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 58
67159199 AGATTTACAT
* * *
67159209 ACCTATATTTGGCCCATTAAGCCC-AATCATATTTATATGGCTCATTAGGCCCGAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTTATATGGCCCATTAGGCCCGAATC
* * *
67159266 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTTATATGGCCCATTAGGCCC
67159319 AGTCACATTC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTTATATGGCCCATTAGGCCCGAATC
Found at i:67160310 original size:40 final size:40
Alignment explanation
Indices: 67160286--67160528 Score: 396
Period size: 40 Copynumber: 6.1 Consensus size: 40
67160276 AGCCCAGATG
* *
67160286 TAACAACCAGCACAAATGCCTTCGAGACTTAACCCGGAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
* * *
67160326 TAGCAACCAGCATGAACGCCTTCGGGACTTAACCCGGAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
*
67160366 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
*
67160406 TAACAACCAGCATGAATGCCTTCGGGACTTAACCCGGAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
*
67160446 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGAAAA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
* *
67160486 TAACAACCAGCATGAATGCCTTCGGGACTTAACCCGGATA
1 TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
67160526 TAA
1 TAA
67160529 TCCTTAATTG
Statistics
Matches: 187, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 187 1.00
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (40 bp):
TAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGAAA
Found at i:67162861 original size:24 final size:24
Alignment explanation
Indices: 67162832--67162882 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
67162822 GTACCCAAAC
* *
67162832 TTTCGGCTTTTCGGCATTTCAACT
1 TTTCGGCATTTCGACATTTCAACT
*
67162856 TTTCGGCATTTCGACATTTCAGCT
1 TTTCGGCATTTCGACATTTCAACT
67162880 TTT
1 TTT
67162883 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.16, T:0.47
Consensus pattern (24 bp):
TTTCGGCATTTCGACATTTCAACT
Found at i:67162875 original size:16 final size:16
Alignment explanation
Indices: 67162840--67162875 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
67162830 ACTTTCGGCT
*
67162840 TTTCGGCATTTCAACT
1 TTTCGGCATTTCAACA
*
67162856 TTTCGGCATTTCGACA
1 TTTCGGCATTTCAACA
67162872 TTTC
1 TTTC
67162876 AGCTTTTGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.25, G:0.14, T:0.44
Consensus pattern (16 bp):
TTTCGGCATTTCAACA
Found at i:67168008 original size:44 final size:43
Alignment explanation
Indices: 67167866--67168024 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
67167856 AGCTCGTACA
* * *
67167866 ATGCCAACGTCCCAGACCTGGTCTTATATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCG
* * *
67167909 ATACC-ACTGTACCAGACAAGGTCTTACACG-AAATC-AAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAAT-CG
* * *
67167951 ATGCCGATGTCCCAGATATGGTCTTACACGTAAATCATAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AAATCG
* *
67167995 ATGCCAACGTCCCAGACGTGATCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
67168025 AAAACACATA
Statistics
Matches: 93, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 31 0.33
44 27 0.29
45 4 0.04
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCG
Found at i:67196372 original size:21 final size:21
Alignment explanation
Indices: 67196346--67196388 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
67196336 TTTCCATCCT
*
67196346 TTGTAGTCCCGCCAAGCTAGC
1 TTGTAGTCCCACCAAGCTAGC
*
67196367 TTGTAGTTCCACCAAGCTAGC
1 TTGTAGTCCCACCAAGCTAGC
67196388 T
1 T
67196389 CGGGGATCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (21 bp):
TTGTAGTCCCACCAAGCTAGC
Found at i:67200357 original size:12 final size:12
Alignment explanation
Indices: 67200340--67200366 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67200330 ATTTCGAAGT
67200340 ATATATATATAC
1 ATATATATATAC
67200352 ATATATATATAC
1 ATATATATATAC
67200364 ATA
1 ATA
67200367 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:67208157 original size:12 final size:12
Alignment explanation
Indices: 67208140--67208165 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67208130 CATTCCGAAG
67208140 TATATATATACA
1 TATATATATACA
67208152 TATATATATACA
1 TATATATATACA
67208164 TA
1 TA
67208166 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:67208696 original size:27 final size:28
Alignment explanation
Indices: 67208612--67208709 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
67208602 CATGAGATTG
* * * *
67208612 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
67208641 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
67208669 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67208696 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67208710 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67208720 original size:27 final size:27
Alignment explanation
Indices: 67208640--67208722 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
67208630 TAAATTGTAC
* *
67208640 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
67208668 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
67208695 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
67208722 A
1 A
67208723 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:67215554 original size:27 final size:26
Alignment explanation
Indices: 67215510--67215561 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67215500 CTCGCTGCAA
*
67215510 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
67215537 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
67215562 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:67223603 original size:22 final size:20
Alignment explanation
Indices: 67223573--67223618 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
67223563 TGAAATTTTA
67223573 ATTAGTATTATGAGATAAAATT
1 ATTAGTATTATGAGA-AAAA-T
* *
67223595 ATTATTATTATTAGAAAAAT
1 ATTAGTATTATGAGAAAAAT
67223615 ATTA
1 ATTA
67223619 CTGTATGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 5 0.23
21 4 0.18
22 13 0.59
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (20 bp):
ATTAGTATTATGAGAAAAAT
Found at i:67224253 original size:15 final size:15
Alignment explanation
Indices: 67224220--67224258 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
67224210 CTTCTTCCTC
67224220 TCTTTTTCCTTCATTT
1 TCTTTTTCCTT-ATTT
67224236 TCTTTCTTCCTT-TTT
1 TCTTT-TTCCTTATTT
67224251 TCTTTTTC
1 TCTTTTTC
67224259 TTCTAGCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 3 0.14
15 8 0.36
16 5 0.23
17 6 0.27
ACGTcount: A:0.03, C:0.26, G:0.00, T:0.72
Consensus pattern (15 bp):
TCTTTTTCCTTATTT
Found at i:67227270 original size:31 final size:31
Alignment explanation
Indices: 67227229--67227324 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
67227219 GGCAGTTACA
67227229 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
* *
67227260 TACCTAATCAGTGAAAAATGGTAGCTCCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
* *
67227291 TACCTGATCAGTGAATAGTGGTAGCTTCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
67227322 TAC
1 TAC
67227325 AAGTGACAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (31 bp):
TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
Found at i:67227419 original size:47 final size:48
Alignment explanation
Indices: 67227349--67227474 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 48
67227339 AAGTGATTTC
*
67227349 CGTATAAGACCATATCTGGGATATGGCATCGATGTGATATATG-GTACT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTG-ACT
*
67227397 -GTATAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTGACT
* * *
67227442 CGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 CGTATAAGACCATATCTGGGATATGGCATCGAT
67227475 ATATGAATAT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
45 11 0.16
46 28 0.41
47 30 0.43
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (48 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTGACT
Found at i:67227551 original size:42 final size:42
Alignment explanation
Indices: 67227443--67227557 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 42
67227433 TATGTGATTC
*
67227443 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
* * *
67227485 GTGTAAGACCATAGCAGGGCTATGGCAT-TATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
* *
67227527 GTGTAAGACCATAGTTGAAG-TATGGCATCGA
1 GTGTAAGACCATAGCTG-GGCTATGGCATCGA
67227558 GAAAACGAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
41 1 0.02
42 59 0.95
43 2 0.03
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:67231962 original size:50 final size:51
Alignment explanation
Indices: 67231887--67232013 Score: 186
Period size: 50 Copynumber: 2.5 Consensus size: 51
67231877 CCATGGCAAC
*
67231887 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA-
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGACCAAGGACAAA-TGAG
*
67231937 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGACCAATGACAAATGAG
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGACCAAGGACAAATGAG
* * *
67231988 AAGTGAAAAGTGGTAGCTTCAGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
67232014 TTGATCAGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (51 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGACCAAGGACAAATGAG
Found at i:67232027 original size:31 final size:31
Alignment explanation
Indices: 67231989--67232168 Score: 238
Period size: 31 Copynumber: 5.8 Consensus size: 31
67231979 ACAAATGAGA
* *
67231989 AGTGAAAAGTGGTAGCTTCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
67232020 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
67232051 AGTGAAAAGTAGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
67232082 AGTGAAAAGTTGTAG-TTGCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* *
67232113 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
67232144 AATGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
67232169 AAGTGACAAG
Statistics
Matches: 132, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 2 0.02
31 129 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:67232261 original size:47 final size:47
Alignment explanation
Indices: 67232192--67232315 Score: 151
Period size: 47 Copynumber: 2.7 Consensus size: 47
67232182 CAAGTGATTT
** * * *
67232192 CTGTATAAGAGAATATCTGGGATATGGCATCGGTGTGATATGTGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATA
*
67232239 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATA
* * * *
67232286 C-GTGTAAGACCATAACTGAGCTATGGCATC
1 CTGTATAAGACCATATCTGGGATATGGCATC
67232316 TGTAATGCCC
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 25 0.37
47 42 0.63
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATA
Found at i:67233743 original size:40 final size:40
Alignment explanation
Indices: 67233669--67233850 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
67233659 AACCCAAGTA
* *
67233669 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
67233708 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
67233748 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* **
67233788 CCTTCGGGACTTGGCCTAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
67233828 CCTTCGGGACTTATCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67233851 CATTCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:67239337 original size:18 final size:18
Alignment explanation
Indices: 67239311--67239345 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67239301 TTAATCATGC
*
67239311 TCACATATCATTTTCATT
1 TCACATATCACTTTCATT
*
67239329 TCACCTATCACTTTCAT
1 TCACATATCACTTTCAT
67239346 GTAATTCACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (18 bp):
TCACATATCACTTTCATT
Found at i:67246875 original size:49 final size:49
Alignment explanation
Indices: 67246822--67246982 Score: 243
Period size: 49 Copynumber: 3.3 Consensus size: 49
67246812 GCCGTGGCCT
67246822 AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
1 AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
67246871 AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
1 AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
* ** * * *
67246920 AGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCATGTCCC
1 AGACAGGTCTTACAATGAATTTCGTATATCGAG-GTCGATGCCATGTCCC
*
67246969 AGATAGGTCTTACA
1 AGACAGGTCTTACA
67246983 CTGACACACA
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
48 1 0.01
49 103 0.99
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (49 bp):
AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
Found at i:67246983 original size:49 final size:49
Alignment explanation
Indices: 67246822--67247169 Score: 226
Period size: 49 Copynumber: 7.3 Consensus size: 49
67246812 GCCGTGGCCT
* * *
67246822 AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
1 AGACAGGTCTTACACTGAATCTCATATATCGAGGTCGATGCCATGTCCC
* * *
67246871 AGACAGGTCTTACAATGAATTTCGTATATCGAGGTCGATGCCATGTCCC
1 AGACAGGTCTTACACTGAATCTCATATATCGAGGTCGATGCCATGTCCC
** *
67246920 AGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCATGTCCC
1 AGACAGGTCTTACACTGAATCTCATATATCGAG-GTCGATGCCATGTCCC
* * * * * * *
67246969 AGATAGGTCTTACACTG-A-CACACA-A-CAAGCT-GACGCCATATCCC
1 AGACAGGTCTTACACTGAATCTCATATATCGAGGTCGATGCCATGTCCC
* ** *
67247013 AGACAGGTCTTACACT--AGCTTGTATATCCTGATGGT-GAT-TCATGTCCC
1 AGACAGGTCTTACACTGAATCTCATATAT-C-GA-GGTCGATGCCATGTCCC
* * * * * * *
67247061 AGACATGTCTTACACT-AGCTCTCATCT-T-AATGCCGATG-CATGTCCT
1 AGACAGGTCTTACACTGA-ATCTCATATATCGAGGTCGATGCCATGTCCC
* ** * * *
67247107 AGACATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATG-CATGTCCT
1 AGACAGGTCTTACACTGAATCTCATATATCGAGGTCGATGCCATGTCCC
*
67247153 AGACATGTCTTACACTG
1 AGACAGGTCTTACACTG
67247170 TCTCACATAC
Statistics
Matches: 245, Mismatches: 40, Indels: 31
0.78 0.13 0.10
Matches are distributed among these distances:
43 1 0.00
44 28 0.11
45 4 0.02
46 69 0.28
47 4 0.02
48 24 0.10
49 111 0.45
50 4 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (49 bp):
AGACAGGTCTTACACTGAATCTCATATATCGAGGTCGATGCCATGTCCC
Found at i:67247169 original size:46 final size:46
Alignment explanation
Indices: 67247053--67247178 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
67247043 GATGGTGATT
* * **
67247053 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGCCGATG
1 CATGTCCTAGACATGTCTTACACTGGCTCTCATAATAATGCCGATG
*
67247099 CATGTCCTAGACATGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 CATGTCCTAGACATGTCTTACACTGGCTCTCATAATAAT-GCCGATG
* *
67247145 CATGTCCTAGACATGTCTTACACTGTCTCACATA
1 CATGTCCTAGACATGTCTTACACTGGCTCTCATA
67247179 CCACCCAATG
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 71 0.99
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTGGCTCTCATAATAATGCCGATG
Found at i:67258398 original size:230 final size:230
Alignment explanation
Indices: 67257995--67258448 Score: 784
Period size: 230 Copynumber: 2.0 Consensus size: 230
67257985 CAATCTATTG
*
67257995 ACAACAACCCAGATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAGATACAAAATCCATCGT
1 ACAACAACCCACATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAGATACAAAATCCATCGT
*
67258060 AACTCTATCCCATTTCCACTCAGGTATCATGACAGGCTGAAGTAATCCTGAAGGCACCTGATGTT
66 AACTCTATCCCATTGCCACTCAGGTATCATGACAGGCTGAAGTAATCCTGAAGGCACCTGATGTT
*
67258125 CAGCTTTTACTTGATGACAGACTAAACATTTTGTAACAAAGTCAGAAATGTCTCGCTTCATACCA
131 CAGCTTTTACTTGATGACAGACTAAACATTTTGTAACAAAGTCAAAAATGTCTCGCTTCATACCA
67258190 TGCC-ACTAGTAAAGTTGTTTCAGATCATTCTATCA
196 TGCCAAC-AGTAAAGTTGTTTCAGATCATTCTATCA
* * * * *
67258225 ACAACAATCCACATTGCATCTTTCTTGCCCGGTGTCAATGGTAAATCAGATACAAAATCTATCGT
1 ACAACAACCCACATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAGATACAAAATCCATCGT
*
67258290 AACTCTATCCCATTGCCACTCAGGTATCATGATAGGCTGAAGTAATCCTGAAGGCACCTGATGTT
66 AACTCTATCCCATTGCCACTCAGGTATCATGACAGGCTGAAGTAATCCTGAAGGCACCTGATGTT
* * *
67258355 TAGCTTTTACTTGTTGACAGACTAAACATTTTGTAACAAAGTCAAAAATGTCTCGCTTCATTCCA
131 CAGCTTTTACTTGATGACAGACTAAACATTTTGTAACAAAGTCAAAAATGTCTCGCTTCATACCA
67258420 TGCCAACAGTAAAGTTGTTTCAGATCATT
196 TGCCAACAGTAAAGTTGTTTCAGATCATT
67258449 ATACATCTTT
Statistics
Matches: 211, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
230 209 0.99
231 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (230 bp):
ACAACAACCCACATTGCATATTTCTTGCCCGGTGTAAATGGTAAACCAGATACAAAATCCATCGT
AACTCTATCCCATTGCCACTCAGGTATCATGACAGGCTGAAGTAATCCTGAAGGCACCTGATGTT
CAGCTTTTACTTGATGACAGACTAAACATTTTGTAACAAAGTCAAAAATGTCTCGCTTCATACCA
TGCCAACAGTAAAGTTGTTTCAGATCATTCTATCA
Found at i:67262410 original size:40 final size:40
Alignment explanation
Indices: 67262263--67262485 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
67262253 TTGAATGATG
* * * *
67262263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67262303 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67262342 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
67262381 TCCGGGTTAAGTCTCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67262421 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67262461 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67262486 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 23 0.14
39 55 0.35
40 73 0.46
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67262480 original size:79 final size:78
Alignment explanation
Indices: 67262263--67262485 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 78
67262253 TTGAATGATG
* * * * * *
67262263 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
67262327 TGTGCGAGATACTAA
64 TGTGCGAGATACTAA
* * * *
67262342 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCTCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
67262405 TGTGCGAGTTACTAAA
64 TGTGCGAGATACT-AA
* *
67262421 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
67262486 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
77 2 0.02
78 44 0.36
79 63 0.52
80 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAA
Found at i:67270280 original size:80 final size:79
Alignment explanation
Indices: 67270088--67270306 Score: 266
Period size: 79 Copynumber: 2.8 Consensus size: 79
67270078 AAGTGACCAT
* * * *
67270088 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCAA
67270151 TTGTGCGAGTTACTAA
64 TTGTGCGAGTTACTAA
*
67270167 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCAAT
67270232 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTA-A
* ** * * *
67270248 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTCCCGAAGG
67270307 TACGTGATTT
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 61 0.50
80 59 0.48
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCAATT
GTGCGAGTTACTAA
Found at i:67270287 original size:40 final size:40
Alignment explanation
Indices: 67270049--67270273 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
67270039 TTGAATGATG
* * * * *
67270049 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
67270089 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67270129 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67270168 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67270208 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67270249 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67270274 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67304487 original size:16 final size:15
Alignment explanation
Indices: 67304463--67304492 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
67304453 AACTATTTTA
67304463 TTACAAATTTCACTC
1 TTACAAATTTCACTC
67304478 TTACATAATTTCACT
1 TTACA-AATTTCACT
67304493 TGCTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:67306091 original size:23 final size:23
Alignment explanation
Indices: 67306009--67306095 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
67305999 CCTGATCAGT
*
67306009 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
67306031 A-ACGACACACGATGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* * *
67306051 ATACGACATACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
67306074 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
67306096 TCGATAAAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
22 1 0.02
23 18 0.35
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:67306491 original size:15 final size:15
Alignment explanation
Indices: 67306466--67306523 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
67306456 TCATATATAT
67306466 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
67306482 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
67306497 AATAATTTCAATCAA
1 TATAAATTCAATCAA
67306512 TATAAATTCAAT
1 TATAAATTCAAT
67306524 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:67306817 original size:15 final size:14
Alignment explanation
Indices: 67306797--67306836 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
67306787 CCCTGCTCTC
67306797 TGTTTCATTTCATTA
1 TGTTTC-TTTCATTA
*
67306812 TGTTTCTATTCATTT
1 TGTTTCT-TTCATTA
67306827 TGTTTCTTTC
1 TGTTTCTTTC
67306837 CTTTATTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.12, C:0.15, G:0.07, T:0.65
Consensus pattern (14 bp):
TGTTTCTTTCATTA
Found at i:67316850 original size:29 final size:30
Alignment explanation
Indices: 67316793--67316911 Score: 115
Period size: 29 Copynumber: 4.2 Consensus size: 30
67316783 TACATACATG
* *
67316793 CATATGGTCCA-CTAGGCCCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
67316821 CAAATGGCCCATCTA-GCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
67316850 CTTATGGCCC-GCTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
67316879 CATATGGCCCAT-TATGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
67316908 -ATAT
1 CATAT
67316912 TTGTGCTCAC
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 21 0.29
29 52 0.71
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.30
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:67316867 original size:57 final size:58
Alignment explanation
Indices: 67316795--67316907 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 58
67316785 CATACATGCA
* ** **
67316795 TATGGTCCACTAGGCCCAA-TCTTATTCAAATGGCCCATCTA-GCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCAT-TATGCCCAAATCATATTCT
* *
67316852 TATGGCCCGCTAGGCCCAATTCACATTCATATGGCCCATTATGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCATTATGCCCAAATCATATT
67316908 ATATTTGTGC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (58 bp):
TATGGCCCACTAGGCCCAATTCACATTCAAATGGCCCATTATGCCCAAATCATATTCT
Found at i:67321868 original size:25 final size:26
Alignment explanation
Indices: 67321840--67321890 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
67321830 AATATTGTAT
* * *
67321840 ATAATTTTTAT-TAATAATTTTAATA
1 ATAATTTATATATAAAAATTTGAATA
67321865 ATAATTTATATATAAAAATTTGAATA
1 ATAATTTATATATAAAAATTTGAATA
67321891 TAAAAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
ATAATTTATATATAAAAATTTGAATA
Found at i:67321884 original size:14 final size:14
Alignment explanation
Indices: 67321842--67321898 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
67321832 TATTGTATAT
* *
67321842 AATTTTTAT-TAAT
1 AATTTATATATAAA
*
67321855 AATTT-TA-ATAAT
1 AATTTATATATAAA
67321867 AATTTATATATAAA
1 AATTTATATATAAA
67321881 AATTTGA-ATATAAA
1 AATTT-ATATATAAA
67321895 AATT
1 AATT
67321899 ATTAATTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
12 11 0.28
13 7 0.18
14 20 0.51
15 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
AATTTATATATAAA
Found at i:67321893 original size:25 final size:24
Alignment explanation
Indices: 67321838--67321893 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
67321828 GTAATATTGT
* * *
67321838 ATATAATTTTTATTAATAATTTTA
1 ATATAATTTATATTAAAAATTTGA
67321862 ATAATAATTTATATATAAAAATTTGA
1 AT-ATAATTTATAT-TAAAAATTTGA
67321888 ATATAA
1 ATATAA
67321894 AAATTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.07
25 14 0.52
26 11 0.41
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATAATTTATATTAAAAATTTGA
Found at i:67323558 original size:37 final size:37
Alignment explanation
Indices: 67323508--67323581 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
67323498 CCCATACTTG
67323508 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
1 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
67323545 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
1 CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
67323582 TCTTTGGATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (37 bp):
CACACAAACTTAAATTAAAACTCAATAAACAAATCAT
Found at i:67325399 original size:21 final size:23
Alignment explanation
Indices: 67325369--67325410 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
67325359 ATAAAATATA
67325369 TATTAGATTAAATTAA-ATTTTG
1 TATTAGATTAAATTAAGATTTTG
*
67325391 TATTA-ATTAATTTAAGATTT
1 TATTAGATTAAATTAAGATTT
67325411 CACTAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (23 bp):
TATTAGATTAAATTAAGATTTTG
Found at i:67330338 original size:24 final size:24
Alignment explanation
Indices: 67330311--67330366 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
67330301 TTATTAGGTT
67330311 TCACCCTAATCCGGCAAAATCTTA
1 TCACCCTAATCCGGCAAAATCTTA
*
67330335 TCACCCTAATCTGGCAAAATCTTA
1 TCACCCTAATCCGGCAAAATCTTA
67330359 TCACCCTA
1 TCACCCTA
67330367 TCTCTAGGCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.32, C:0.34, G:0.07, T:0.27
Consensus pattern (24 bp):
TCACCCTAATCCGGCAAAATCTTA
Found at i:67334872 original size:29 final size:28
Alignment explanation
Indices: 67334840--67334895 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
67334830 TATTCATCTG
*
67334840 GCCCATTTGGCCCAAATCACCTTTATATC
1 GCCCATTAGGCCCAAATCACC-TTATATC
*
67334869 GCCCGTTAGGCCCAAATCACCTTATAT
1 GCCCATTAGGCCCAAATCACCTTATAT
67334896 TCATGCTCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.25, C:0.34, G:0.12, T:0.29
Consensus pattern (28 bp):
GCCCATTAGGCCCAAATCACCTTATATC
Found at i:67337610 original size:26 final size:26
Alignment explanation
Indices: 67337574--67337656 Score: 148
Period size: 26 Copynumber: 3.2 Consensus size: 26
67337564 TGAAATTCCA
67337574 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67337600 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
67337626 ATCATGAAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67337652 ATCAT
1 ATCAT
67337657 TTTGTACCAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67340224 original size:56 final size:56
Alignment explanation
Indices: 67340138--67340248 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 56
67340128 ACCATGGCAT
* * *
67340138 CGATATATGTGTACAAGTAAGATCATGTTTAATACGTTGGTATCGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
67340194 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
1 CGATATATGTGTACAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
67340249 ACATGTAAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (56 bp):
CGATATATGTGTACAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:67341335 original size:46 final size:46
Alignment explanation
Indices: 67341282--67341418 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
67341272 TATATATACA
* * *
67341282 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* *
67341328 CATCTCATACACGTTTCGCATTAGCCATTTGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* *
67341374 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTGCCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATAT
67341419 ATACACTTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
Found at i:67341463 original size:47 final size:47
Alignment explanation
Indices: 67341392--67341672 Score: 429
Period size: 47 Copynumber: 6.0 Consensus size: 47
67341382 ACACATTTCG
* * ** * * *
67341392 CATTAGCCATTCGGCTTTGCCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
**
67341439 CATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
67341486 CATTGGCCATTCGGCTTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
67341533 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
67341580 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
67341627 CATTGACCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
67341673 TCATAAAATC
Statistics
Matches: 217, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 216 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:67341580 original size:25 final size:25
Alignment explanation
Indices: 67341551--67341628 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
67341541 ATTCGGCCTT
67341551 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
67341576 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
67341598 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
67341623 ATCACA
1 ATCACA
67341629 TTGACCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:67341603 original size:22 final size:22
Alignment explanation
Indices: 67341529--67341603 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
67341519 GTTCACATTC
67341529 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
67341551 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
67341575 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
67341598 ATCACA
1 ATCACA
67341604 CATATGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:67366888 original size:40 final size:40
Alignment explanation
Indices: 67366814--67367034 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 40
67366804 AACCCAAGTA
* *
67366814 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
67366853 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
67366893 CCTTCAGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
67366933 CCTTCGGGACTTAGCCCTGATATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* ** *
67366973 CCTTCGGGATTTAGCCCGGATATAGTCACTAGTGC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
67367012 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67367035 CATCCGAATA
Statistics
Matches: 156, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.24
40 117 0.75
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:67366946 original size:80 final size:80
Alignment explanation
Indices: 67366814--67367034 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 80
67366804 AACCCAAGTA
*
67366814 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGATTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
67366878 TCACTAGCACAAAAG
66 TCAATAGCACAAAAG
* * * *
67366893 CCTTCAGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCTGATATAG
1 CCTTCGGGATTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
67366958 TCAATAGCACAACTG
66 TCAATAGCACAAAAG
* ** *
67366973 CCTTCGGGATTTAGCCCGGATATAGTC-ACTAGTGC-CATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGATTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
67367035 CATCCGAATA
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 36 0.29
80 87 0.70
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:67375326 original size:40 final size:40
Alignment explanation
Indices: 67375266--67375472 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
67375256 TGAGATTTTG
* *
67375266 CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGC
* **
67375306 CCGGATATAGTCACTAGCACAAAAGCCTTTAGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* *
67375346 CCGGATATAG-CAACTCGCACAAACGCCTTCGGGACTTAGC
1 CCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGC
* *
67375386 CCGGATATAGTCAATAGCACAACTGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
* * * *
67375426 CCGGATATTGTCACTAGCAC-CATGCCTTTGGGATTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
67375465 CCGGATAT
1 CCGGATAT
67375473 CATCCGAATA
Statistics
Matches: 145, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 24 0.17
40 119 0.82
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGC
Found at i:67378127 original size:15 final size:16
Alignment explanation
Indices: 67378109--67378138 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67378099 AATTGTTTTA
67378109 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
67378124 TTACATAATTTCACT
1 TTACATAATTTCACT
67378139 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:67378458 original size:50 final size:50
Alignment explanation
Indices: 67378348--67378631 Score: 227
Period size: 50 Copynumber: 5.6 Consensus size: 50
67378338 ATCTGGTAAG
*
67378348 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA-CAGTCT-AGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCA-TCTGA-TACA
* *
67378397 CGTAGTAGCCTGCTCTTAGTACTACACATGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA
* * * * *** * * *
67378447 CGTAGTAGCCTGCACTTATTACTACACACGTGA-TTGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATCTGATACA
* * * * * *
67378498 CATAGTAACCTACACTTAATATTACACATGCGACCTAACTATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA
* * * * *
67378548 CATAGTAGCCTGCATTTAGTACTACACACGTGACCTAAAATCATCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGATACA
* * *
67378600 CATAGTAACCTACA-TATGGTACTACACATGTG
1 CATAGTAGCCTGCACT-TAGTACTACACATGTG
67378632 TTCTCACAAT
Statistics
Matches: 185, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
49 33 0.18
50 77 0.42
51 38 0.21
52 37 0.20
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACA
Found at i:67393073 original size:27 final size:26
Alignment explanation
Indices: 67393009--67393121 Score: 111
Period size: 27 Copynumber: 4.2 Consensus size: 26
67392999 AGGAAGTGTC
* *
67393009 CTGGTGGCTAC-GCCACAAATTATTTGAT
1 CTGGTGGCT-CTGCCAC--ATTATCTGTT
67393037 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
67393064 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * * *
67393092 CTGGTGACTTTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTGTT
67393118 CTGG
1 CTGG
67393122 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
26 7 0.09
27 38 0.51
28 30 0.40
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:67393094 original size:55 final size:54
Alignment explanation
Indices: 67393009--67393121 Score: 131
Period size: 55 Copynumber: 2.1 Consensus size: 54
67392999 AGGAAGTGTC
* * *
67393009 CTGGTGGCTACGCCACAAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTATT
* * *
67393064 CTGGTGGCT-CTGCCAC-GATTATCTGTATCTGGTGACTTTGTCACATTATCTATT
1 CTGGTGGCTAC-GCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTATT
67393118 CTGG
1 CTGG
67393122 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 19 0.38
55 31 0.62
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
Found at i:67396675 original size:50 final size:50
Alignment explanation
Indices: 67396563--67396840 Score: 238
Period size: 50 Copynumber: 5.5 Consensus size: 50
67396553 CTGGTACGCA
* * * *
67396563 TAGTAGCCTACACTTAGTACTACACATGCGACC-AACAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
67396612 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * *** * * * *
67396662 TAGTAGCCTACACTTAGTACTACACACATGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCT-AA-CCATCTGATACACG
* * * * *
67396713 TAGTAGCCTGCACTTAGTACTACTCATGCGACCTAACTATCT-AGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA-TACACG
* * * * * * *
67396763 TAGTAGCCTGCACCTAGTACTACACACGTGACGTAAAACCATTTTAAACACA
1 TAGTAGCCTACACTTAGTACTACACACGTGACCT--AACCATCTGATACACG
* * *
67396815 TAGTAGCTTGCACATAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
67396841 TGTTCTAAAT
Statistics
Matches: 185, Mismatches: 36, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
49 32 0.17
50 82 0.44
51 35 0.19
52 35 0.19
53 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:67396840 original size:151 final size:149
Alignment explanation
Indices: 67396555--67396842 Score: 407
Period size: 151 Copynumber: 1.9 Consensus size: 149
67396545 GAAGCTATCT
*
67396555 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTAGTACACGTAGTAGCC
* * * *
67396620 TACACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTAC
66 TACACCTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTA-
67396685 ACACATGATTGAAGTTGTCG
130 ACACATGATTGAAGTTGTCG
* * *
67396705 GGTACGCATAGTAGCCTGCACTTAGTACTACTCATGCGACCTAACTATCTAGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACAATCTAGTACACGTAGTAGC
* * * * * *
67396770 CTGCACCTAGTACTACACACGTGACGTAAAACCATTTTAAACACATAGTAGCTTGCACATAGTAC
65 CTACACCTAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTACACATAGTAC
67396835 T-ACACATG
128 TAACACATG
67396843 TTCTAAATGG
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
150 39 0.32
151 52 0.43
153 30 0.25
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (149 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCTAGTACACGTAGTAGCC
TACACCTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTACTAA
CACATGATTGAAGTTGTCG
Found at i:67403912 original size:24 final size:24
Alignment explanation
Indices: 67403880--67403927 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
67403870 AATAACATTT
67403880 ATATCATTGATTCAAGCATCTAAC
1 ATATCATTGATTCAAGCATCTAAC
67403904 ATATCATTGATTCAAGCATCTAAC
1 ATATCATTGATTCAAGCATCTAAC
67403928 TTACCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (24 bp):
ATATCATTGATTCAAGCATCTAAC
Found at i:67403941 original size:24 final size:24
Alignment explanation
Indices: 67403884--67403938 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
67403874 ACATTTATAT
* *
67403884 CATTGATTCAAGCATCTAACATAT
1 CATTAATTCAAGCATCTAACATAC
* *
67403908 CATTGATTCAAGCATCTAACTTAC
1 CATTAATTCAAGCATCTAACATAC
67403932 CA-TAATT
1 CATTAATT
67403939 TCACAACTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (24 bp):
CATTAATTCAAGCATCTAACATAC
Found at i:67404175 original size:56 final size:56
Alignment explanation
Indices: 67404115--67404268 Score: 247
Period size: 56 Copynumber: 2.8 Consensus size: 56
67404105 TCCCAGACAG
* *
67404115 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTACTAAACGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
* * *
67404171 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
67404227 GGTCTTACTCGC-CTACATATATCGGAGTCACATATCGATGCC
1 GGTCTTACTCGCAC-ACATATATCGGAGTCACATATCGATGCC
67404269 GTGGTCTTAC
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 1 0.01
56 90 0.99
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTACTAAACAT
Found at i:67408991 original size:40 final size:40
Alignment explanation
Indices: 67408773--67408984 Score: 318
Period size: 40 Copynumber: 5.3 Consensus size: 40
67408763 TTTCCAAACC
* * * *
67408773 CAAATACCTTCGGGATTTAG-CCGGATATAGCAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
67408812 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
67408852 CAGATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
67408892 AAAATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
67408932 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
67408972 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67408985 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 18 0.11
40 140 0.89
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:67410378 original size:13 final size:13
Alignment explanation
Indices: 67410360--67410385 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67410350 ATTTTTATTT
67410360 TTAACATAAAATA
1 TTAACATAAAATA
67410373 TTAACATAAAATA
1 TTAACATAAAATA
67410386 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:67414991 original size:40 final size:40
Alignment explanation
Indices: 67414886--67415031 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
67414876 GCTACTCGTT
*
67414886 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
67414926 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
67414966 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67415007 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67415032 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67422820 original size:40 final size:40
Alignment explanation
Indices: 67422783--67422928 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
67422773 GCTACTCGTT
*
67422783 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
67422823 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
67422863 CAAATGCCTTCGGGACTTAACCCGAATTTGGTCACTTAGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAAC-TCGCA
* * *
67422904 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
67422929 CATCATTCAA
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 85 0.89
41 10 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:67425075 original size:28 final size:28
Alignment explanation
Indices: 67425044--67425176 Score: 101
Period size: 28 Copynumber: 4.7 Consensus size: 28
67425034 ATAATGTGAT
*
67425044 TTGGGCCAGATGGGCGATATAAATGAGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
* * * *
67425072 TTGGGCTA-ACGGGCCATATGAATGTGAA
1 TTGGGCCAGATGGGCCATATAAATGAG-A
* * *
67425100 TTAGGCCTGATGGGCCATATGAACGTGA-A
1 TTGGGCCAGATGGGCCATAT-AA-ATGAGA
* * * *
67425129 TTAGGCCGGAAGGGCCATATAAATGCGA
1 TTGGGCCAGATGGGCCATATAAATGAGA
67425157 TTGGGCCTAG-TGGGCCATAT
1 TTGGGCC-AGATGGGCCATAT
67425177 GCATGTATGT
Statistics
Matches: 80, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
27 16 0.20
28 31 0.39
29 30 0.38
30 1 0.01
31 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
TTGGGCCAGATGGGCCATATAAATGAGA
Found at i:67425095 original size:27 final size:29
Alignment explanation
Indices: 67425055--67425177 Score: 83
Period size: 29 Copynumber: 4.3 Consensus size: 29
67425045 TGGGCCAGAT
* * *
67425055 GGGCGATATAAATGAG-ATT-GGGCTAAC
1 GGGCCATATGAATGAGAATTAGGCCTAAC
* * *
67425082 GGGCCATATGAATGTGAATTAGGCCTGAT
1 GGGCCATATGAATGAGAATTAGGCCTAAC
* * *
67425111 GGGCCATATGAACGTGAATTAGGCCGGAA-
1 GGGCCATATGAATGAGAATTAGGCC-TAAC
* * * **
67425140 GGGCCATATAAATGCG-ATTGGGCCTAGT
1 GGGCCATATGAATGAGAATTAGGCCTAAC
67425168 GGGCCATATG
1 GGGCCATATG
67425178 CATGTATGTA
Statistics
Matches: 76, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
27 14 0.18
28 19 0.25
29 42 0.55
30 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.23
Consensus pattern (29 bp):
GGGCCATATGAATGAGAATTAGGCCTAAC
Found at i:67425117 original size:29 final size:29
Alignment explanation
Indices: 67425082--67425182 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
67425072 TTGGGCTAAC
67425082 GGGCCATATGAATGTGAATTAGGCCTGAT
1 GGGCCATATGAATGTGAATTAGGCCTGAT
* * *
67425111 GGGCCATATGAACGTGAATTAGGCCGGAA
1 GGGCCATATGAATGTGAATTAGGCCTGAT
* * *
67425140 GGGCCATATAAATGCG-ATTGGGCCT-AGT
1 GGGCCATATGAATGTGAATTAGGCCTGA-T
*
67425168 GGGCCATATGCATGT
1 GGGCCATATGAATGT
67425183 ATGTAGGGGT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.02
28 19 0.32
29 39 0.66
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.24
Consensus pattern (29 bp):
GGGCCATATGAATGTGAATTAGGCCTGAT
Found at i:67429113 original size:20 final size:20
Alignment explanation
Indices: 67429088--67429125 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67429078 GACTAAACCG
67429088 AGAACTTTAG-AAATTTTTAC
1 AGAAC-TTAGAAAATTTTTAC
67429108 AGAACTTAGAAAATTTTT
1 AGAACTTAGAAAATTTTT
67429126 GCACTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (20 bp):
AGAACTTAGAAAATTTTTAC
Found at i:67432215 original size:18 final size:19
Alignment explanation
Indices: 67432192--67432227 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67432182 ACAATAAAAA
*
67432192 AGGAAAT-TTAAAAGAAAG
1 AGGAAATGTAAAAAGAAAG
67432210 AGGAAATGTAAAAAGAAA
1 AGGAAATGTAAAAAGAAA
67432228 AGAAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.22, T:0.14
Consensus pattern (19 bp):
AGGAAATGTAAAAAGAAAG
Found at i:67435112 original size:42 final size:42
Alignment explanation
Indices: 67435066--67435168 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 42
67435056 CCTCTATTCT
* *
67435066 AGACAGGGTCTTACACGAAAT-T-AGATACGATGCC-GACGTCCC
1 AGACACGGTCTTACACGAAATCTCA-AT-CGAGGCCTG-CGTCCC
* * *
67435108 AGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCC
1 AGACACGGTCTTACACG-AAATCTCAATCGAGGCCTGCGTCCC
67435151 AGACACGGTCTTACACGA
1 AGACACGGTCTTACACGA
67435169 TGTCTCAGAC
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 16 0.31
43 30 0.59
44 4 0.08
45 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (42 bp):
AGACACGGTCTTACACGAAATCTCAATCGAGGCCTGCGTCCC
Found at i:67436184 original size:26 final size:26
Alignment explanation
Indices: 67436148--67436199 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
67436138 TTGGTACTTA
67436148 ATCAAATAGAAGGCCACTTTTGCATT
1 ATCAAATAGAAGGCCACTTTTGCATT
67436174 ATCAAATAGAAGGCCACTTTTGCATT
1 ATCAAATAGAAGGCCACTTTTGCATT
67436200 CTCTGCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (26 bp):
ATCAAATAGAAGGCCACTTTTGCATT
Found at i:67442773 original size:46 final size:45
Alignment explanation
Indices: 67442723--67442898 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
67442713 TGGTTGAGCA
**
67442723 TCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
67442769 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
67442816 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
67442862 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67442899 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.61
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67442879 original size:93 final size:93
Alignment explanation
Indices: 67442720--67442890 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67442710 GGATGGTTGA
** * *
67442720 GCATCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67442785 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
67442813 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67442878 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67442891 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:67447794 original size:27 final size:26
Alignment explanation
Indices: 67447764--67447855 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 26
67447754 ATCCTAAATA
* *
67447764 GGTAAAATGACTGTAATACCCTTGCAG
1 GGTAAAATGACCGTAATACCC-TGTAG
* *
67447791 GGTAAAATGACCGTAATGCCCCTGTTG
1 GGTAAAATGACCGTAAT-ACCCTGTAG
* *
67447818 GGTAAAATGACCATAATACCACTGTAT
1 GGTAAAATGACCGTAATACC-CTGTAG
67447845 GGTAAAATGAC
1 GGTAAAATGAC
67447856 AATTATGCCC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.04
27 50 0.91
28 3 0.05
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
GGTAAAATGACCGTAATACCCTGTAG
Found at i:67508400 original size:38 final size:40
Alignment explanation
Indices: 67508358--67508528 Score: 192
Period size: 40 Copynumber: 4.4 Consensus size: 40
67508348 CCAGCATGAT
* * *
67508358 TGCTCTTCGGGACCTAG-CCGGATTA-A-CACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGA-TACATCACTAGCACGAA
** * * *
67508396 TGCTCTTCAGG-GTTTAGCACAGATATATCACTAGCACG-A
1 TGCTCTTC-GGAACTTAGCCCGGATACATCACTAGCACGAA
*
67508435 TGCTCTTC-GAACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
67508474 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
67508514 TGCTCTTCGGAACTT
1 TGCTCTTCGGAACTT
67508529 GTCGGATATG
Statistics
Matches: 112, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
38 34 0.30
39 24 0.21
40 53 0.47
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Done.