Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 208 of 290
Found at i:67508945 original size:29 final size:29
Alignment explanation
Indices: 67508873--67508947 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 29
67508863 CTTAATAATC
*
67508873 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
* ** *
67508903 AACTCATACGCTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
67508932 AGCCCGCACACTTAGT
1 AACCCGCACACTTAGT
67508948 CCAATCTCAC
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
28 3 0.09
29 28 0.82
30 3 0.09
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:67511106 original size:47 final size:47
Alignment explanation
Indices: 67511020--67511561 Score: 619
Period size: 47 Copynumber: 11.4 Consensus size: 47
67511010 CCCTTCGGGA
* * * * * * * *
67511020 CTTATCACAT-TATGCAGTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67511066 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
67511113 CTTATCACATATATACACTTTCACATTCATCACATGCCTTGG-CA-TACATC
1 CTTATCACATATATACACTTTCACATTCATCACAT--C--GGCCATTA-GGC
*
67511163 CATTCATGCTGCTATTACAATATACAC-TTCACATTC-TCACATC-G-CATTAGGC
1 C-TT-AT-C-AC-A-T---ATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67511215 CTTAT-ACATAT-TA-ACCTTTCACATTCATCACATC-GCTATTA-GC
1 CTTATCACATATATACA-CTTTCACATTCATCACATCGGCCATTAGGC
* *
67511258 CTTATCACATATATACAACTTTCACATTCATCACATCGGCTATTTGGC
1 CTTATCACATATATAC-ACTTTCACATTCATCACATCGGCCATTAGGC
67511306 CTTATCACACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67511355 CTTATCACAATATATACAC-TTCACATTCATCACATC-GCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67511401 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67511449 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67511495 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67511542 CTTACTCACATTTATACACT
1 CTTA-TCACATATATACACT
67511562 GTCTTGGCTG
Statistics
Matches: 435, Mismatches: 28, Indels: 64
0.83 0.05 0.12
Matches are distributed among these distances:
40 1 0.00
41 3 0.01
42 11 0.03
43 15 0.03
44 10 0.02
45 3 0.01
46 100 0.23
47 147 0.34
48 48 0.11
49 37 0.09
50 17 0.04
51 6 0.01
52 7 0.02
53 3 0.01
54 1 0.00
55 2 0.00
56 1 0.00
57 6 0.01
58 9 0.02
59 8 0.02
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67511291 original size:46 final size:47
Alignment explanation
Indices: 67511182--67511561 Score: 559
Period size: 46 Copynumber: 8.2 Consensus size: 47
67511172 TGCTATTACA
67511182 ATATACAC-TTCACATTC-TCACATC-G-CATTAGGCCTTAT-ACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
67511224 AT-TA-ACCTTTCACATTCATCACATC-GCTATTA-GCCTTATCACAT
1 ATATACA-CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
67511268 ATATACAACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACAT
1 ATATAC-ACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACAT
67511318 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-AT
67511366 ATATACAC-TTCACATTCATCACATC-GCCATTAGGCCTTATCACTAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-AT
67511412 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
67511459 ATATACACTTTCACATTCATCACATCGGCTATTAGG-CTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
67511505 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACTCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACAT
*
67511553 TTATACACT
1 ATATACACT
67511562 GTCTTGGCTG
Statistics
Matches: 311, Mismatches: 10, Indels: 28
0.89 0.03 0.08
Matches are distributed among these distances:
40 1 0.00
41 3 0.01
42 11 0.04
43 15 0.05
44 10 0.03
45 2 0.01
46 91 0.29
47 85 0.27
48 48 0.15
49 34 0.11
50 11 0.04
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.33
Consensus pattern (47 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:67533037 original size:39 final size:39
Alignment explanation
Indices: 67532989--67533112 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
67532979 CGAAGTTTGA
* * *
67532989 ATATGATTCCCGCATATAGCCTACGGAACTTAAGTCTGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
67533028 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
*
67533067 ATATAATTCCCGCATATAGCCTACAGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
67533106 ATATAAT
1 ATATAAT
67533113 CACCATATAT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (39 bp):
ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
Found at i:67533047 original size:78 final size:78
Alignment explanation
Indices: 67532947--67533112 Score: 206
Period size: 78 Copynumber: 2.1 Consensus size: 78
67532937 ACTATTAGCT
* ** *
67532947 CGGATATAATTCCAGCACATAGCCGGCGAACCCGAAGTTTGAATATGATTCCCGCATATAGCCTA
1 CGGATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCTA
*
67533012 CGGAACTTAAGTC
66 CAGAACTTAAGTC
* * * * * ** *
67533025 TGGATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGGATATAATTCCCGCATATAGCCTA
1 CGGATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCTA
*
67533090 CAGACCTTAAGTC
66 CAGAACTTAAGTC
67533103 CGGATATAAT
1 CGGATATAAT
67533113 CACCATATAT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (78 bp):
CGGATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCTA
CAGAACTTAAGTC
Found at i:67535598 original size:43 final size:43
Alignment explanation
Indices: 67535450--67535598 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 43
67535440 GGTTTCAAAC
67535450 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * *** *
67535493 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCGTG-CTCCGA-GC
1 CTAGCAGGC-GTAATGCCGGTGAAATGA-TATCG-GACTTAAAGGT
*
67535534 CTAGCAGGCGTAATGCTGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* *
67535577 CTAGCAGGCTTATTGCCGGTGA
1 CTAGCAGGCGTAATGCCGGTGA
67535599 TGAAATCAAG
Statistics
Matches: 82, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
40 3 0.04
41 18 0.22
42 22 0.27
43 36 0.44
44 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
Found at i:67542527 original size:17 final size:18
Alignment explanation
Indices: 67542505--67542540 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
67542495 CACATTGAAG
67542505 TGTTTTCA-TGAAAACCT
1 TGTTTTCATTGAAAACCT
67542522 TGTTTTCATTGAAAACCT
1 TGTTTTCATTGAAAACCT
67542540 T
1 T
67542541 TCCTTGAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TGTTTTCATTGAAAACCT
Found at i:67545823 original size:27 final size:27
Alignment explanation
Indices: 67545804--67546239 Score: 422
Period size: 27 Copynumber: 16.2 Consensus size: 27
67545794 ATTACCAAAG
67545804 TACCCTCGATTTAAAGAATTACCATTT
1 TACCCTCGATTTAAAGAATTACCATTT
* *
67545831 TACCCTTGATTTACAA-AATTACTATTT
1 TACCCTCGATTTA-AAGAATTACCATTT
*
67545858 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTAAAGAATTACCATTT
* * *
67545885 TACCTTCGATTTACAA-AATTATCGTTT
1 TACCCTCGATTTA-AAGAATTACCATTT
* ***
67545912 TACCCAT-GATTTACAGAATTATTGTTT
1 TACCC-TCGATTTAAAGAATTACCATTT
* * *
67545939 TACCCTCGACTTACAGAATTACTATTT
1 TACCCTCGATTTAAAGAATTACCATTT
* * * *
67545966 TACGCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTAAAGAATTACCATTT
**
67545993 TACCCTCGATTTACAA-AATTACTGTTT
1 TACCCTCGATTTA-AAGAATTACCATTT
* * *
67546020 TACCCTCGGTTTATAGAATTACTATTT
1 TACCCTCGATTTAAAGAATTACCATTT
**
67546047 TACCCTTAATTTATAA-AATTACCATTT
1 TACCCTCGATTTA-AAGAATTACCATTT
*
67546074 TACCCTCGATTTAAA-AATTACTATTT
1 TACCCTCGATTTAAAGAATTACCATTT
* * * *
67546100 TACCCTTGATTTACAGAATTATCGTTT
1 TACCCTCGATTTAAAGAATTACCATTT
***
67546127 TACCCTCGATTTATAA-AATTACTGCTT
1 TACCCTCGATTTA-AAGAATTACCATTT
* *
67546154 TAGCCTCGATTTACAA-AATTACTATTT
1 TACCCTCGATTTA-AAGAATTACCATTT
67546181 TACCCTCGATTTAAAGAATTACCATTT
1 TACCCTCGATTTAAAGAATTACCATTT
*
67546208 TACCCTCAATTTATAA-AATTACCATTT
1 TACCCTCGATTTA-AAGAATTACCATTT
67546235 TACCC
1 TACCC
67546240 CTAGGGTGTT
Statistics
Matches: 346, Mismatches: 50, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
26 31 0.09
27 306 0.88
28 9 0.03
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTAAAGAATTACCATTT
Found at i:67545862 original size:54 final size:54
Alignment explanation
Indices: 67545804--67546239 Score: 522
Period size: 54 Copynumber: 8.1 Consensus size: 54
67545794 ATTACCAAAG
* *
67545804 TACCCTCGATTTAAAGAATTACCATTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
* * * *
67545858 TACCCTCGATTTATAGAATTACCATTTTACCTTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACT-ATTT
* * * * *
67545912 TACCCAT-GATTTACAGAATTATTGTTTTACCCTCGACTTACAGAATTACTATTT
1 TACCC-TCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
* * * *
67545966 TACGCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
* * ** * *
67546020 TACCCTCGGTTTATAGAATTACTATTTTACCCTTAATTTATAAAATTACCATTT
1 TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
* * *
67546074 TACCCTCGATTTAAA-AATTACTATTTTACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACT-ATTT
** *
67546127 TACCCTCGATTTATAA-AATTACTGCTTTAGCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTA-AAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
* * * *
67546181 TACCCTCGATTTAAAGAATTACCATTTTACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
67546235 TACCC
1 TACCC
67546240 CTAGGGTGTT
Statistics
Matches: 326, Mismatches: 48, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
53 49 0.15
54 274 0.84
55 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTAAAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
Found at i:67545894 original size:81 final size:81
Alignment explanation
Indices: 67545804--67546239 Score: 554
Period size: 81 Copynumber: 5.4 Consensus size: 81
67545794 ATTACCAAAG
* *
67545804 TACCCTCGATTTA-AAGAATTACCATTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGAT
1 TACCCTCAATTTATAA-AATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGAT
*
67545868 TTATAGAATTACCATTT
65 TTACAGAATTACCATTT
* * * * * * * * *
67545885 TACCTTCGATTTACAAAATTATCGTTTTACCCAT-GATTTACAGAATTATTGTTTTACCCTCGAC
1 TACCCTCAATTTATAAAATTACCATTTTACCC-TCGATTTACAAAATTACTATTTTACCCTCGAT
*
67545949 TTACAGAATTACTATTT
65 TTACAGAATTACCATTT
* * * * * *
67545966 TACGCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGGTT
1 TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
67546031 TATAGAATTACTATTT
66 TACAGAATTACCATTT
* *
67546047 TACCCTTAATTTATAAAATTACCATTTTACCCTCGATTTA-AAAATTACTATTTTACCCTTGATT
1 TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
67546111 TACAGAATTATCGTTT
66 TACAGAATTACCATTT
* *** *
67546127 TACCCTCGATTTATAAAATTACTGCTTTAGCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
67546192 TAAAGAATTACCATTT
66 TACAGAATTACCATTT
67546208 TACCCTCAATTTATAAAATTACCATTTTACCC
1 TACCCTCAATTTATAAAATTACCATTTTACCC
67546240 CTAGGGTGTT
Statistics
Matches: 303, Mismatches: 48, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
80 68 0.22
81 232 0.77
82 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCAATTTATAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:67546530 original size:28 final size:29
Alignment explanation
Indices: 67546472--67546570 Score: 138
Period size: 28 Copynumber: 3.6 Consensus size: 29
67546462 AGCCTCATTG
*
67546472 TATATCTGTGA-CTGGTGGCCTCGCCAC-A
1 TATATCTGT-ATCTGGTGGCCTAGCCACAA
67546500 TATATCTGT-TCTGGTGGCCTAGCCACAA
1 TATATCTGTATCTGGTGGCCTAGCCACAA
67546528 TATATCTGT-TCTGGTGGCCTAGCCACAA
1 TATATCTGTATCTGGTGGCCTAGCCACAA
67546556 TAT-T-TGTATCTGGTG
1 TATATCTGTATCTGGTG
67546571 ACTTCGTCAC
Statistics
Matches: 67, Mismatches: 1, Indels: 7
0.89 0.01 0.09
Matches are distributed among these distances:
26 3 0.04
27 23 0.34
28 41 0.61
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (29 bp):
TATATCTGTATCTGGTGGCCTAGCCACAA
Found at i:67546742 original size:31 final size:31
Alignment explanation
Indices: 67546707--67546780 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
67546697 TTGCATTCAC
* * * *
67546707 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
* *
67546738 ATTCTGATTCTAATTTTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
67546769 ATTCTGATTCTA
1 ATTCTGATTCTA
67546781 TCACCTAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:67546746 original size:6 final size:6
Alignment explanation
Indices: 67546707--67546825 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
67546697 TTGCATTCAC
* * * *
67546707 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
67546756 -TCACCTA ATTCTG ATTCTG ATTCT- ATCACCTA ATTCTG ATTCTG ATTCTC
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
67546806 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
67546826 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
5 6 0.07
6 66 0.80
7 7 0.08
8 4 0.05
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:67546766 original size:25 final size:25
Alignment explanation
Indices: 67546738--67546804 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
67546728 CCTGATACTG
* *
67546738 ATTCTGATTCTAATTTTGTCACCTA
1 ATTCTGATTCTAATTCTATCACCTA
*
67546763 ATTCTGATTCTGATTCTATCACCTA
1 ATTCTGATTCTAATTCTATCACCTA
*
67546788 ATTCTGATTCTGATTCT
1 ATTCTGATTCTAATTCT
67546805 CATTTTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.22, C:0.21, G:0.09, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTATCACCTA
Found at i:67548862 original size:40 final size:40
Alignment explanation
Indices: 67548756--67548940 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
67548746 TCGGATGATG
* *
67548756 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * *
67548795 TTCCGGGCTAAG-CCCGAAGACAATTGTGCGAGTTATTATA
1 -ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
** * *
67548835 TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGTA
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
67548875 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
67548915 ACCGGG-TCAAGTCCCGAAGGCATTTG
1 ACCGGGCT-AAGTCCCGAAGGCATTTG
67548941 AGCAAGTAGT
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 32 0.25
40 95 0.75
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:67548971 original size:119 final size:119
Alignment explanation
Indices: 67548756--67548973 Score: 273
Period size: 119 Copynumber: 1.8 Consensus size: 119
67548746 TCGGATGATG
* *
67548756 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGACAATTG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGACAATTG
* * * *
67548821 TGCGAGTTATTATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTGTA
66 AGCAAGTTATTATATTCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTATTGTA
* * * *
67548875 ACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGG-TCAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCT-AAG-CCCGAAGACAA
*
67548938 TTGAGCAAG-TAGTTATA-TCCGGCTAAATTCCGAAGG
63 TTGAGCAAGTTA-TTATATTCCGGCTAAATCCCGAAGG
67548974 TACTTGGGTT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
118 3 0.04
119 60 0.71
120 21 0.25
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGACAATTG
AGCAAGTTATTATATTCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTATTGTA
Found at i:67554069 original size:45 final size:44
Alignment explanation
Indices: 67554001--67554133 Score: 167
Period size: 45 Copynumber: 3.0 Consensus size: 44
67553991 TAGGATTCTG
* * **
67554001 ATATGTGTTTTTTGTGTAAGACCACGTCTGGGATGTTGGCATCA
1 ATATATGTGTTTTGTGTAAGACCACGTCTGGGACATTGGCATCA
**
67554045 ATATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATTG
1 ATATATGTGTTTT-GTGTAAGACCACGTCTGGGACATTGGCATCA
* * *
67554090 ATATATGTGGTTATGTGTAAGACCATGTCTGGGACATCGGCATC
1 ATATATGT-GTTTTGTGTAAGACCACGTCTGGGACATTGGCATC
67554134 GTATTGATCC
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
44 11 0.14
45 62 0.81
46 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
ATATATGTGTTTTGTGTAAGACCACGTCTGGGACATTGGCATCA
Found at i:67559745 original size:18 final size:18
Alignment explanation
Indices: 67559724--67559784 Score: 122
Period size: 18 Copynumber: 3.4 Consensus size: 18
67559714 ACGATCCTAA
67559724 ATAAAATGGTAGACATAG
1 ATAAAATGGTAGACATAG
67559742 ATAAAATGGTAGACATAG
1 ATAAAATGGTAGACATAG
67559760 ATAAAATGGTAGACATAG
1 ATAAAATGGTAGACATAG
67559778 ATAAAAT
1 ATAAAAT
67559785 TTTCTTTAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.52, C:0.05, G:0.20, T:0.23
Consensus pattern (18 bp):
ATAAAATGGTAGACATAG
Found at i:67562986 original size:21 final size:20
Alignment explanation
Indices: 67562941--67562986 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
67562931 TTGTTGGAAT
67562941 GGTT-AATTTAATCTCTTTA
1 GGTTGAATTTAATCTCTTTA
*
67562960 GCTTGAATTTAAT-TCATGTTA
1 GGTTGAATTTAATCTC-T-TTA
67562981 GGTTGA
1 GGTTGA
67562987 TTGCATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 5 0.23
20 9 0.41
21 8 0.36
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (20 bp):
GGTTGAATTTAATCTCTTTA
Found at i:67568714 original size:49 final size:50
Alignment explanation
Indices: 67568591--67568720 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
67568581 ATAGAGGTGT
* * * *
67568591 TAGTGCAAGACCATGTCTGGGACATAGCATCGGCCTCGATTTCTGAGGGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATTTCTGAAGGC
* * *
67568641 TAGTGTAAGACCATGTCTCA-GACATGGCGTCGGCCTCTATTTC-GATAGTC
1 TAGTGTAAGACCATGTCT-AGGACATGGCATCGGCCTCGATTTCTGA-AGGC
67568691 -AGTGTAAGACCATGTCTAGGACATGGCATC
1 TAGTGTAAGACCATGTCTAGGACATGGCATC
67568721 AACATTAGAC
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
48 1 0.01
49 29 0.42
50 39 0.57
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (50 bp):
TAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATTTCTGAAGGC
Found at i:67569488 original size:30 final size:30
Alignment explanation
Indices: 67569452--67569520 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
67569442 CATACGGATA
*
67569452 GACACACGGGCGTGTGTCTAGGCCGTGTGT
1 GACACACGGGAGTGTGTCTAGGCCGTGTGT
67569482 GACACACGGGAGTGTGTCTAGGCCGTGTGT
1 GACACACGGGAGTGTGTCTAGGCCGTGTGT
67569512 GACACACGG
1 GACACACGG
67569521 TTAGCCTCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.17, C:0.23, G:0.39, T:0.20
Consensus pattern (30 bp):
GACACACGGGAGTGTGTCTAGGCCGTGTGT
Found at i:67569950 original size:20 final size:20
Alignment explanation
Indices: 67569911--67569950 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
67569901 GTTATAATGA
67569911 TCACATGGGCGTATTGCCCTT
1 TCACATGGGCG-ATTGCCCTT
67569932 TCACATGGGC-ATGTGCCCT
1 TCACATGGGCGAT-TGCCCT
67569951 GTATCAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.15, C:0.30, G:0.25, T:0.30
Consensus pattern (20 bp):
TCACATGGGCGATTGCCCTT
Found at i:67575160 original size:22 final size:22
Alignment explanation
Indices: 67575133--67575206 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
67575123 ATGTATATAT
67575133 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* ****
67575155 ATGTGATGAATG--TGAAGTGTATT
1 ATGTGAT-AAGGCCT-AA-TGGCCG
67575178 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
67575200 ATGTGAT
1 ATGTGAT
67575207 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.11, G:0.31, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:67575246 original size:47 final size:47
Alignment explanation
Indices: 67575117--67575518 Score: 664
Period size: 47 Copynumber: 8.6 Consensus size: 47
67575107 GGTAATTGTG
* *
67575117 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67575164 ATGTG-AAGTGTAT-TATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67575209 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
**
67575256 ATGTGAAAGTGTATATATGTGATAAGGCCTAACAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67575303 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67575350 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67575397 ATGTGAAAGTGTATATATGTGATATGAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATA--AGGCCTAATGGCCGATGTGATGA
* * *
67575446 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67575493 ATGTGAAAGTGTATATATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
67575519 TCCCGAAGAG
Statistics
Matches: 332, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
45 37 0.11
46 14 0.04
47 236 0.71
49 45 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:67578142 original size:40 final size:40
Alignment explanation
Indices: 67577783--67578130 Score: 545
Period size: 40 Copynumber: 8.7 Consensus size: 40
67577773 AGGTCTCGAC
*
67577783 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67577822 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
67577862 GATGTATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
67577902 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
67577942 GATGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67577982 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67578022 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
67578062 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
67578102 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
67578131 ATCATGCTGG
Statistics
Matches: 285, Mismatches: 23, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
39 4 0.01
40 281 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:67578342 original size:25 final size:25
Alignment explanation
Indices: 67578307--67578357 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
67578297 GTGTAATAAC
67578307 GAATGAATAGAAGCACTATGTGTGT
1 GAATGAATAGAAGCACTATGTGTGT
* * *
67578332 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGAATAGAAGCACTATGTGTGT
67578357 G
1 G
67578358 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGAATAGAAGCACTATGTGTGT
Found at i:67580293 original size:20 final size:20
Alignment explanation
Indices: 67580268--67580308 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
67580258 TATGCTAAGG
67580268 TAGTCATGTGGATAATCGGC
1 TAGTCATGTGGATAATCGGC
67580288 TAGTCATGTGGATAATCGGC
1 TAGTCATGTGGATAATCGGC
67580308 T
1 T
67580309 TTGTGAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (20 bp):
TAGTCATGTGGATAATCGGC
Found at i:67581663 original size:47 final size:47
Alignment explanation
Indices: 67581611--67582024 Score: 639
Period size: 47 Copynumber: 8.6 Consensus size: 47
67581601 GATAATTGTG
* *
67581611 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67581658 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCC---T-----A----ATGGCCGATGTGATGA
67581717 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67581764 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67581811 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67581858 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67581905 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67581952 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67581999 ATGTGAAAGTGTATATATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
67582025 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 14, Indels: 24
0.90 0.04 0.06
Matches are distributed among these distances:
47 292 0.86
50 1 0.00
51 1 0.00
55 1 0.00
56 1 0.00
59 45 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:67581706 original size:12 final size:12
Alignment explanation
Indices: 67581689--67581715 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67581679 ATAAGGCCTA
67581689 ATGGCCGATGTG
1 ATGGCCGATGTG
67581701 ATGGCCGATGTG
1 ATGGCCGATGTG
67581713 ATG
1 ATG
67581716 AATGTGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.41, T:0.26
Consensus pattern (12 bp):
ATGGCCGATGTG
Found at i:67581736 original size:25 final size:25
Alignment explanation
Indices: 67581708--67581786 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
67581698 GTGATGGCCG
67581708 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
67581733 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
67581755 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
67581780 ATGTGAT
1 ATGTGAT
67581787 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:67593737 original size:38 final size:38
Alignment explanation
Indices: 67593685--67593759 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
67593675 TCTAACATTA
* *
67593685 TGTACTTAGTTAAGTTCGTGTGTAAATGTAGTAATATT
1 TGTACTTAGGTAAGTTCATGTGTAAATGTAGTAATATT
67593723 TGTACTTAGGTAAGTTCATGTGTAAATGTAGTAATAT
1 TGTACTTAGGTAAGTTCATGTGTAAATGTAGTAATAT
67593760 AATTGTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (38 bp):
TGTACTTAGGTAAGTTCATGTGTAAATGTAGTAATATT
Found at i:67597659 original size:48 final size:48
Alignment explanation
Indices: 67597556--67597725 Score: 183
Period size: 48 Copynumber: 3.6 Consensus size: 48
67597546 AGATGTAAGC
* * *
67597556 CAGTTTAAGA-CATGTCTGGGACAT-GCATTGGC---TATGAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGATAT-AGAGGTGT
67597600 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGATATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGATATAGAGGTGT
* * * *
67597648 CAGTGCAAGACCATGTCTGGGACATGGCATCGACAAGGATAT-GTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-A-GATATAGAG-GTGT
67597697 CTAGTGTAAGACCATGTCTGGGACATGGC
1 C-AGTGTAAGACCATGTCTGGGACATGGC
67597726 GTCAGCCTTG
Statistics
Matches: 109, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
44 9 0.08
45 14 0.13
46 7 0.06
48 39 0.36
49 7 0.06
50 33 0.30
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGATATAGAGGTGT
Found at i:67597713 original size:50 final size:48
Alignment explanation
Indices: 67597504--67597824 Score: 195
Period size: 46 Copynumber: 6.8 Consensus size: 48
67597494 GCGTTGAGAC
*
67597504 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-C-AGAGATGT
* * *
67597552 -A-AGCCAGTTTAAGA-CATGTCTGGGACAT-GCATTGGCTATGAGATGT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-A-GAGATGT
* * *
67597598 --G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAGATAT-A
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGT
* * * *
67597641 GAG-GTGTCAGTGCAAGACCATGTCTGGGACATGGCATCGACAAGGATATGT
1 GAGAG-CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-A-GAGATGT
* * *** *
67597692 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTTGATTT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGT
* ** * * **
67597740 CGATAG-TCAGTGTAAGATAATGTTTGGGACATGGCATCGAC-TTGATG-
1 -GAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGT
** *
67597787 GATTCGCTATTGTAAGACCATGTCTGGGACATGGCATC
1 GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
67597825 AGCATTATAC
Statistics
Matches: 219, Mismatches: 37, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
44 12 0.05
45 19 0.09
46 47 0.21
47 29 0.13
48 41 0.19
49 32 0.15
50 34 0.16
51 4 0.02
52 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (48 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGAGATGT
Found at i:67598720 original size:20 final size:20
Alignment explanation
Indices: 67598681--67598720 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
67598671 GTTATAATGA
67598681 TCACATGGGCATGTTGCCCTT
1 TCACATGGGCA-GTTGCCCTT
67598702 TCACATGGGC-GTCTGCCCT
1 TCACATGGGCAGT-TGCCCT
67598721 GTTTCAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.12, C:0.33, G:0.25, T:0.30
Consensus pattern (20 bp):
TCACATGGGCAGTTGCCCTT
Found at i:67606062 original size:40 final size:40
Alignment explanation
Indices: 67606005--67606154 Score: 221
Period size: 40 Copynumber: 3.8 Consensus size: 40
67605995 GATGGTAACT
* **
67606005 GGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
** *
67606045 GGGCTAAGTCCTAAAGGCATTTGTGCGAGTTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
67606085 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
67606125 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67606155 AGCTACATCT
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 98 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:67614002 original size:40 final size:40
Alignment explanation
Indices: 67613944--67614161 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
67613934 CGGATGGTAA
* **
67613944 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
67613984 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67614024 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67614064 CCGGGCTTAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67614104 TCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67614144 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67614162 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 17 0.11
40 143 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67615721 original size:33 final size:33
Alignment explanation
Indices: 67615673--67615737 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
67615663 ATATCTGCAT
*
67615673 CTGATACTGATTCTGT-ATTGGGCTTAGGCCCAC
1 CTGATACTGATTCTGTGA-TGGGCTCAGGCCCAC
67615706 CTGATACTG-TGTCTGTGATGGGCTCAGGCCCA
1 CTGATACTGAT-TCTGTGATGGGCTCAGGCCCA
67615738 ATCTAGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 1 0.03
33 27 0.93
34 1 0.03
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.31
Consensus pattern (33 bp):
CTGATACTGATTCTGTGATGGGCTCAGGCCCAC
Found at i:67639812 original size:20 final size:20
Alignment explanation
Indices: 67639789--67639835 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
67639779 GGGTTAAGAT
*
67639789 TGAGCTGAATTGAGCTTAAG
1 TGAGCTGAATTGAGCTCAAG
* * *
67639809 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCAAG
67639829 TGAGCTG
1 TGAGCTG
67639836 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:67650055 original size:29 final size:29
Alignment explanation
Indices: 67650007--67650117 Score: 136
Period size: 29 Copynumber: 3.8 Consensus size: 29
67649997 TATGGCCTAC
*
67650007 TAGGCCC-AATCTCATTCATATAGCCCAT
1 TAGGCCCAAATCACATTCATATAGCCCAT
** *
67650035 TAGGCCCAAATCTTATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATAGCCCAT
*
67650064 TAGGACCAAATCACATTCATACGGT-GCCCAT
1 TAGGCCCAAATCACATTCATA---TAGCCCAT
67650095 TAGGCCCAAATCACATTCATATA
1 TAGGCCCAAATCACATTCATATA
67650118 CATGTTTTCA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
28 8 0.11
29 37 0.51
31 26 0.36
32 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (29 bp):
TAGGCCCAAATCACATTCATATAGCCCAT
Found at i:67650193 original size:17 final size:17
Alignment explanation
Indices: 67650171--67650212 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
67650161 TGCCTATGAT
67650171 GGGCCCAAC-AGCCCATC
1 GGGCCC-ACTAGCCCATC
67650188 GGGCCCACTTAGCCCATC
1 GGGCCCAC-TAGCCCATC
67650206 GTGGCCC
1 G-GGCCC
67650213 GGTTGGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 6 0.27
18 9 0.41
19 5 0.23
ACGTcount: A:0.17, C:0.45, G:0.26, T:0.12
Consensus pattern (17 bp):
GGGCCCACTAGCCCATC
Found at i:67650327 original size:16 final size:16
Alignment explanation
Indices: 67650306--67650373 Score: 84
Period size: 16 Copynumber: 4.2 Consensus size: 16
67650296 CATAGCCAAA
*
67650306 ATTTTGGCTTTTTGGC
1 ATTTTGGCTTTTCGGC
*
67650322 ATTTTGACTTTTCGGC
1 ATTTTGGCTTTTCGGC
67650338 ATTTTGGCTTTTCGGC
1 ATTTTGGCTTTTCGGC
* *
67650354 -TTTTCGGCATTTCGGG
1 ATTTT-GGCTTTTCGGC
67650370 ATTT
1 ATTT
67650374 GCCAATCTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
15 4 0.09
16 38 0.84
17 3 0.07
ACGTcount: A:0.09, C:0.16, G:0.24, T:0.51
Consensus pattern (16 bp):
ATTTTGGCTTTTCGGC
Found at i:67650342 original size:24 final size:24
Alignment explanation
Indices: 67650307--67650365 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
67650297 ATAGCCAAAA
*
67650307 TTTT-GGCTTTTTGGCATTTT-GAC
1 TTTTCGGCATTTTGGC-TTTTCGAC
*
67650330 TTTTCGGCATTTTGGCTTTTCGGC
1 TTTTCGGCATTTTGGCTTTTCGAC
67650354 TTTTCGGCATTT
1 TTTTCGGCATTT
67650366 CGGGATTTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 8 0.25
24 24 0.75
ACGTcount: A:0.07, C:0.17, G:0.22, T:0.54
Consensus pattern (24 bp):
TTTTCGGCATTTTGGCTTTTCGAC
Found at i:67650358 original size:8 final size:8
Alignment explanation
Indices: 67650307--67650368 Score: 58
Period size: 8 Copynumber: 7.9 Consensus size: 8
67650297 ATAGCCAAAA
67650307 TTTT-GGC
1 TTTTCGGC
*
67650314 TTTTTGGC
1 TTTTCGGC
*
67650322 ATTTT-GAC
1 -TTTTCGGC
67650330 TTTTCGGC
1 TTTTCGGC
67650338 ATTTT-GGC
1 -TTTTCGGC
67650346 TTTTCGGC
1 TTTTCGGC
67650354 TTTTCGGC
1 TTTTCGGC
*
67650362 ATTTCGG
1 TTTTCGG
67650369 GATTTGCCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
7 12 0.26
8 27 0.57
9 8 0.17
ACGTcount: A:0.06, C:0.18, G:0.24, T:0.52
Consensus pattern (8 bp):
TTTTCGGC
Found at i:67650373 original size:8 final size:8
Alignment explanation
Indices: 67650331--67650373 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
67650321 CATTTTGACT
67650331 TTTCGGCA
1 TTTCGGCA
* *
67650339 TTTTGGCT
1 TTTCGGCA
*
67650347 TTTCGGCT
1 TTTCGGCA
67650355 TTTCGGCA
1 TTTCGGCA
*
67650363 TTTCGGGA
1 TTTCGGCA
67650371 TTT
1 TTT
67650374 GCCAATCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.07, C:0.19, G:0.26, T:0.49
Consensus pattern (8 bp):
TTTCGGCA
Found at i:67652056 original size:42 final size:43
Alignment explanation
Indices: 67651937--67652102 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
67651927 AGCTCGTACA
* * * *
67651937 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
* * * * ** *
67651979 ATGCCACTGTCCTAGACAGGGTCTTACACAAAATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
* *
67652022 ATGCCAATATCCC-GACAAGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATA-ACG
* * *
67652064 ATGCCAATGTCCCAGACATGGTATTACATGTAATCACAT
1 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACAT
67652103 TTCGGTAATC
Statistics
Matches: 97, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.01
42 39 0.40
43 57 0.59
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACGTAATCACATAACG
Found at i:67743393 original size:46 final size:47
Alignment explanation
Indices: 67743280--67743764 Score: 748
Period size: 46 Copynumber: 10.4 Consensus size: 47
67743270 TCAGCAAGAC
*
67743280 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67743327 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67743373 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67743420 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-A
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67743468 AGTGTATATGTGTGATAAGG-CTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67743514 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
67743560 AGTGTATATATGTGATAAGGCCTAATAG-CAATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
67743605 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
67743652 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
67743699 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
67743746 ACTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67743765 TCCCGAAGGG
Statistics
Matches: 405, Mismatches: 25, Indels: 16
0.91 0.06 0.04
Matches are distributed among these distances:
45 50 0.12
46 155 0.38
47 154 0.38
48 5 0.01
49 41 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:67743745 original size:232 final size:233
Alignment explanation
Indices: 67743280--67743764 Score: 778
Period size: 232 Copynumber: 2.1 Consensus size: 233
67743270 TCAGCAAGAC
* *
67743280 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
67743345 GGCCTAATAGCCGATGTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
66 GGCCTAATAGCCAATGTGATGAATGTGAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGA
67743410 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTAT
131 TGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTAT
* * * * *
67743475 ATGTGTGATAAGGCTAATAGCCGATGTGATGAATGTGAA
195 ATATGTGACAAGGCGAATAGCCAACGTGATGAATGTGAA
67743514 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67743578 GGCCTAATAG-CAATGTGATGAATGTGAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGA
66 GGCCTAATAGCCAATGTGATGAATGTGAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGA
67743642 TGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 TGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTAT
* * * *
67743706 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
195 ATATGTGACAAGG-CGAATAGCCAACGTGATGAATGTGAA
* * *
67743746 ACTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
67743765 TCCCGAAGGG
Statistics
Matches: 233, Mismatches: 16, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
230 41 0.18
231 18 0.08
232 102 0.44
233 47 0.20
234 25 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (233 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCAATGTGATGAATGTGAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGTGTATA
TATGTGACAAGGCGAATAGCCAACGTGATGAATGTGAA
Found at i:67743938 original size:37 final size:37
Alignment explanation
Indices: 67743882--67743960 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
67743872 CCGAGCTCTA
* *
67743882 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
67743919 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67743956 AAGAC
1 AAGAC
67743961 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67757560 original size:27 final size:26
Alignment explanation
Indices: 67757516--67757567 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
67757506 CTCGCTGCAA
*
67757516 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
67757543 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
67757568 GCAGCCTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:67757634 original size:70 final size:67
Alignment explanation
Indices: 67757499--67757637 Score: 163
Period size: 70 Copynumber: 2.0 Consensus size: 67
67757489 GGAAGCGTTT
* * * * *
67757499 TGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATA
1 TGGCAGCCTCGATGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACCTAGCCACAATA
67757564 TC
66 TC
* * *
67757566 TGGCAGCCTCGATGCAATCT-GTGGCTTCGCCACATATATATATTTGTTCTAGTGGCCTAGCCAC
1 TGGCAGCCTCGATGCAATCTGGTGGCCTCGCCAC----ATATATCTGTTCTAGTGACCTAGCCAC
67757630 AATATC
62 AATATC
67757636 TG
1 TG
67757638 TATCTGGTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
66 12 0.20
67 19 0.32
70 29 0.48
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (67 bp):
TGGCAGCCTCGATGCAATCTGGTGGCCTCGCCACATATATCTGTTCTAGTGACCTAGCCACAATA
TC
Found at i:67760218 original size:8 final size:8
Alignment explanation
Indices: 67760195--67760230 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
67760185 TTTTGGGCTT
67760195 AATGGGCC
1 AATGGGCC
67760203 GAAATGGGCC
1 --AATGGGCC
67760213 AATGGGCC
1 AATGGGCC
67760221 AATGGGCC
1 AATGGGCC
67760229 AA
1 AA
67760231 CAGGCCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 18 0.69
10 8 0.31
ACGTcount: A:0.31, C:0.22, G:0.36, T:0.11
Consensus pattern (8 bp):
AATGGGCC
Found at i:67762799 original size:27 final size:27
Alignment explanation
Indices: 67762735--67762792 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
67762725 TGGATAAGTT
* * *
67762735 GTAGAATTACCAAAATACCCTTGTAAG
1 GTAGAAATACCAAAATACCCCTGCAAG
*
67762762 GTAGAAATACCAAAATACCCCTGCAGG
1 GTAGAAATACCAAAATACCCCTGCAAG
67762789 GTAG
1 GTAG
67762793 GACTACCGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
GTAGAAATACCAAAATACCCCTGCAAG
Found at i:67765781 original size:14 final size:14
Alignment explanation
Indices: 67765762--67765791 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67765752 ACCCCTTCAT
*
67765762 TCCCTCATTCATCA
1 TCCCTCATCCATCA
67765776 TCCCTCATCCATCA
1 TCCCTCATCCATCA
67765790 TC
1 TC
67765792 ATTCTCTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:67767092 original size:28 final size:27
Alignment explanation
Indices: 67767037--67767099 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
67767027 ATAAACATGC
* **
67767037 CATGAAAGAAAAACCTTTGTGATTAAT
1 CATGAAAGAAAAACCTTTATGACGAAT
*
67767064 CATGAAAGAAAAAGCCTTTATGGCGAAT
1 CATGAAAGAAAAA-CCTTTATGACGAAT
*
67767092 CATCAAAG
1 CATGAAAG
67767100 GATCGTTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.24
Consensus pattern (27 bp):
CATGAAAGAAAAACCTTTATGACGAAT
Found at i:67767716 original size:16 final size:15
Alignment explanation
Indices: 67767695--67767735 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
67767685 GGGTATTATA
67767695 TATATTATATGTTAG
1 TATATTATATGTTAG
*
67767710 TTATATTATAAGTTAG
1 -TATATTATATGTTAG
*
67767726 TAAATTATAT
1 TATATTATAT
67767736 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (15 bp):
TATATTATATGTTAG
Found at i:67770381 original size:22 final size:22
Alignment explanation
Indices: 67770354--67770427 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
67770344 TGAATAGAAT
67770354 TGAATCAGGGTATGTCTGAGTG
1 TGAATCAGGGTATGTCTGAGTG
** * ** *
67770376 TGAATCAATAGTGTGAATGGAAT-
1 TGAATC-AGGGTATGTCT-GAGTG
*
67770399 TGAATCAGGCTATGTCTGAGTG
1 TGAATCAGGGTATGTCTGAGTG
67770421 TGAATCA
1 TGAATCA
67770428 ATAGTACAGA
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
21 3 0.08
22 18 0.50
23 12 0.33
24 3 0.08
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.31
Consensus pattern (22 bp):
TGAATCAGGGTATGTCTGAGTG
Found at i:67770406 original size:45 final size:45
Alignment explanation
Indices: 67770342--67770432 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
67770332 AGTATAAGTA
*
67770342 TGTGAATAGAATTGAATCAGGGTATGTCTGAGTGTGAATCAATAG
1 TGTGAATAGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
*
67770387 TGTGAATGGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
1 TGTGAATAGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
67770432 T
1 T
67770433 ACAGAAAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.32
Consensus pattern (45 bp):
TGTGAATAGAATTGAATCAGGCTATGTCTGAGTGTGAATCAATAG
Found at i:67774645 original size:27 final size:26
Alignment explanation
Indices: 67774615--67774676 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
67774605 ATTTACTAAA
* *
67774615 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATGACCATT
* * *
67774642 ATACCCCTAGGTGCAAAGTGACCATT
1 ATACCCCTAAGTGAAAAATGACCATT
67774668 ATACCCCTA
1 ATACCCCTA
67774677 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.63
27 11 0.37
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATGACCATT
Found at i:67774855 original size:27 final size:26
Alignment explanation
Indices: 67774780--67774866 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
67774770 TGGAGGAAGC
* *
67774780 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGTCAC-AATATCT
* *
67774807 ATTCTGGTGGCTCTTTCACAATATCT
1 GTTCTGGTGGCTCTGTCACAATATCT
* *
67774833 GTATCTGGTGACTCTGTCACAATATTT
1 GT-TCTGGTGGCTCTGTCACAATATCT
67774860 GTTCTGG
1 GTTCTGG
67774867 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGTCACAATATCT
Found at i:67779584 original size:17 final size:18
Alignment explanation
Indices: 67779555--67779590 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
67779545 GTTTTCGATC
*
67779555 CGTTTTTGATGATTTTTA
1 CGTTTTTGATGATATTTA
67779573 CGTTTTTG-TGATATTTA
1 CGTTTTTGATGATATTTA
67779590 C
1 C
67779591 TTTGAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.08, G:0.17, T:0.58
Consensus pattern (18 bp):
CGTTTTTGATGATATTTA
Found at i:67783672 original size:93 final size:93
Alignment explanation
Indices: 67783513--67783699 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
67783503 TTACCTTATC
67783513 TATATTTCAGCATATGACCGAACATTCTTAACAACCAAGCTTAATTATATTTATCCAACTACACA
1 TATATTTCAGCATATGACCGAACATTCTTAACAACCAAGCTTAATTATATTTATCCAACTACACA
67783578 TAAGAACCTAATCTTAGATTGAACCACA
66 TAAGAACCTAATCTTAGATTGAACCACA
*
67783606 TATATTTCAGCATATGACCGAACATTCTTAACAACCAAGCTTAATTATATTTATCCAACTGCACA
1 TATATTTCAGCATATGACCGAACATTCTTAACAACCAAGCTTAATTATATTTATCCAACTACACA
67783671 TAAGAACCTAATCTTAGATTGAACCACA
66 TAAGAACCTAATCTTAGATTGAACCACA
67783699 T
1 T
67783700 TCAAATTATC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (93 bp):
TATATTTCAGCATATGACCGAACATTCTTAACAACCAAGCTTAATTATATTTATCCAACTACACA
TAAGAACCTAATCTTAGATTGAACCACA
Found at i:67791868 original size:46 final size:46
Alignment explanation
Indices: 67791736--67791944 Score: 173
Period size: 46 Copynumber: 4.5 Consensus size: 46
67791726 GATGTCATAG
*
67791736 CCCAGACATGGTCTTACATTAG--CTCATCTCATAGTCAATGCATGT
1 CCCAGACATGGTCTTACATTAGCTCTCATCTCAT-GTCGATGCATGT
* * * * *
67791781 CCCAGGCA-CGTCTTAAATTGGCT-TACATCTCGATGTTGATGCATGT
1 CCCAGACATGGTCTTACATTAGCTCT-CATCTC-ATGTCGATGCATGT
* *
67791827 CCCAGACAT-GTCTTACATTAGCTCTCGTCTCAATGCCGATGCCATGT
1 CCCAGACATGGTCTTACATTAGCTCTCATCTC-ATGTCGATG-CATGT
* * * *
67791874 CCCAAACATGGTCTTACATTGGCTCTCATAAT-ATGGTTGATGCATGT
1 CCCAGACATGGTCTTACATTAGCTCTCAT-CTCAT-GTCGATGCATGT
*
67791921 TCCAGACAT-GTCTTAC-TCTAGCTC
1 CCCAGACATGGTCTTACAT-TAGCTC
67791945 ACAATAACGT
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
44 10 0.08
45 9 0.07
46 59 0.45
47 30 0.23
48 22 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (46 bp):
CCCAGACATGGTCTTACATTAGCTCTCATCTCATGTCGATGCATGT
Found at i:67799316 original size:46 final size:44
Alignment explanation
Indices: 67799212--67799338 Score: 141
Period size: 46 Copynumber: 2.8 Consensus size: 44
67799202 AAGGTAAGAT
*
67799212 GCTAATGTCATATCCCAG-GCATAGTCTTACACTAGCTTATCTCGTA
1 GCTAATG-CATGTCCCAGAG-AT-GTCTTACACTAGCTTATCTCGTA
** *
67799258 GCCGATGCATGTCCCAGAGATGTCTTACACTGGCTTACATCTCG-A
1 GCTAATGCATGTCCCAGAGATGTCTTACACTAGCTT--ATCTCGTA
*
67799303 GGCTAATGCATGTCCCAGACATGTCTTACACTAGCT
1 -GCTAATGCATGTCCCAGAGATGTCTTACACTAGCT
67799339 CTAGTCTCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
44 14 0.20
45 12 0.17
46 43 0.62
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
GCTAATGCATGTCCCAGAGATGTCTTACACTAGCTTATCTCGTA
Found at i:67799386 original size:94 final size:91
Alignment explanation
Indices: 67799212--67799433 Score: 245
Period size: 94 Copynumber: 2.4 Consensus size: 91
67799202 AAGGTAAGAT
* * * * *
67799212 GCTAATGTCATATCCCAGGCATAGTCTTACACTAGCT-TATCTCGTAGCCGATGCATGTCCCAGA
1 GCTAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTATCTCATAGCCGATCCATGTCCCAAA
* *
67799276 GATGTCTTACACTGGCT-TACAT-CTCGAG
64 CATGTCTTACACTGGCTCT-CATAATC-AG
*
67799304 GCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTCTCA-ATGTCGATACCATGTCCCAA
1 GCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTA-TCTCATA-GCCGAT-CCATGTCCCAA
*
67799368 ACATGGTCTTACACTGGCTCTCATAATCTG
63 ACAT-GTCTTACACTGGCTCTCATAATCAG
* *
67799398 GCTGATGCATGTCCCAGACATGTCTTACTCTAGCTC
1 GCTAATGCATGTCCCAGACATGTCTTACACTAGCTC
67799434 ACAATAATGC
Statistics
Matches: 112, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
90 14 0.12
91 15 0.13
92 16 0.14
93 12 0.11
94 52 0.46
95 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (91 bp):
GCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTATCTCATAGCCGATCCATGTCCCAAACA
TGTCTTACACTGGCTCTCATAATCAG
Found at i:67812801 original size:40 final size:40
Alignment explanation
Indices: 67812764--67812948 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
67812754 GCTACTCGTT
*
67812764 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
67812804 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
67812844 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
67812883 CAATTGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
67812924 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67812949 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 76 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:67812864 original size:79 final size:81
Alignment explanation
Indices: 67812764--67812948 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
67812754 GCTACTCGTT
* *
67812764 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAATTGCCTTC-GGATCTTAACCC
*
67812827 GGATTTAGTAACTCA-CA
64 GGATATAGTAACTCAGCA
* **
67812844 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAATTGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAATTGCCTTCGGATCTTAACCCGG
* * *
67812908 ATATGGTCACTTAGCA
66 ATATAGTAACTCAGCA
67812924 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67812949 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.62
80 32 0.35
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAATTGCCTTCGGATCTTAACCCGG
ATATAGTAACTCAGCA
Found at i:67816283 original size:27 final size:27
Alignment explanation
Indices: 67816252--67816364 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
67816242 AATACCCCTA
* *
67816252 ATTTGTGAAATTACTTAAATATCCTC-
1 ATTTGTGAAATTACTAAAATACCCTCG
* * *
67816278 AGTTTGCGAAATGACTGAAATACCCTCG
1 A-TTTGTGAAATTACTAAAATACCCTCG
* *
67816306 ATTTGTAAAATTACTAAAATACCATCG
1 ATTTGTGAAATTACTAAAATACCCTCG
* * * * *
67816333 ACTTGTAAAAATTACCAAAGTACCCCCG
1 ATTTGT-GAAATTACTAAAATACCCTCG
67816361 ATTT
1 ATTT
67816365 ACAAAATTAC
Statistics
Matches: 69, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.01
27 47 0.68
28 21 0.30
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (27 bp):
ATTTGTGAAATTACTAAAATACCCTCG
Found at i:67816375 original size:27 final size:27
Alignment explanation
Indices: 67816340--67816400 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
67816330 TCGACTTGTA
67816340 AAAATTACCAAAGTACCCCCGATTTAC
1 AAAATTACCAAAGTACCCCCGATTTAC
*** *
67816367 AAAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAGTACCCCCGATTTAC
67816394 AAAATTA
1 AAAATTA
67816401 TTGAATACCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCCCGATTTAC
Found at i:67816434 original size:27 final size:27
Alignment explanation
Indices: 67816394--67816586 Score: 205
Period size: 27 Copynumber: 7.3 Consensus size: 27
67816384 CTCGATTTAC
*
67816394 AAAATTATTG-AATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
* *
67816420 AAAATTATTGAAATACCACTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
** * * *
67816447 GGAATTACTAAAATACCCCTGTAAGAT
1 AAAATTACTGAAATACCCCTGTAGGGT
*
67816474 AAAATTACCGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
* *
67816501 AGAATTACCGAAATA-CCC-GTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
*
67816526 ATAATTACTGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
* * * * *
67816553 AGAATTACCG-AGTACCCTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
67816579 AAAATTAC
1 AAAATTAC
67816587 CATTTTGCCC
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
25 20 0.14
26 36 0.26
27 85 0.60
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCTGTAGGGT
Found at i:67816552 original size:52 final size:54
Alignment explanation
Indices: 67816404--67816586 Score: 237
Period size: 54 Copynumber: 3.4 Consensus size: 54
67816394 AAAATTATTG
* * * **
67816404 AATACCCCTGTAGGGTAAAATTATTGAAATACCACTGTAGGGTGGAATTACTAA
1 AATACCCCTGTAGGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
67816458 AATACCCCTGTAAGATAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
1 AATACCCCTGTAGGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
*
67816512 AATA-CCC-GTAGGGTATAATTACTGAAATACCCCTGTAGGGTAGAATTACCG-
1 AATACCCCTGTAGGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
67816563 AGTACCCTTGTGGGGTAAAATTAC
1 AATACCCCTGTAGGGTAAAATTAC
67816587 CATTTTGCCC
Statistics
Matches: 111, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
51 3 0.03
52 42 0.38
53 16 0.14
54 50 0.45
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
AATACCCCTGTAGGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
Found at i:67816866 original size:24 final size:25
Alignment explanation
Indices: 67816790--67816859 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
67816780 AGGAAGTGCT
* * * *
67816790 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
67816815 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
67816840 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67816860 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:67816872 original size:24 final size:25
Alignment explanation
Indices: 67816790--67816872 Score: 84
Period size: 25 Copynumber: 3.4 Consensus size: 25
67816780 AGGAAGTGCT
* * *
67816790 AAAAG-GGCTATGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
67816814 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
67816839 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
67816863 AAAAGAGGCT
1 AAAAGAGGCT
67816873 AGGCCTCCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
24 16 0.31
25 35 0.69
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:67821066 original size:25 final size:26
Alignment explanation
Indices: 67821038--67821134 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
67821028 GAGGAAGTGC
* *
67821038 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTATCG
67821063 AAAAGGGCTTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTTGCCCCAGTTTATCG
*
67821089 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTATCG
67821115 AAAAGGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
67821135 ATTAAAAGAG
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
25 20 0.29
26 48 0.71
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTATCG
Found at i:67821406 original size:31 final size:31
Alignment explanation
Indices: 67821354--67821437 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
67821344 TTGTTACAGT
* *
67821354 AAAGTCTTTGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
67821385 AAAGGCTTCGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
67821416 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
67821438 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:67823504 original size:3 final size:3
Alignment explanation
Indices: 67823496--67823520 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
67823486 TGTTTATGAA
67823496 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
67823521 GTAGTAGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:67823525 original size:3 final size:3
Alignment explanation
Indices: 67823519--67823544 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
67823509 TTATTATTAT
67823519 TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TA
67823545 ATCAAATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
TAG
Found at i:67835457 original size:26 final size:26
Alignment explanation
Indices: 67835408--67835457 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
67835398 TACGTTACCG
**
67835408 TTACTGGCAGCTTTGCTGTGATATGA
1 TTACTGGCAGCTTTGCTGCAATATGA
*
67835434 TTACTGGTAGCTTTGCTGCAATAT
1 TTACTGGCAGCTTTGCTGCAATAT
67835458 TGGTGTGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCAATATGA
Found at i:67836415 original size:16 final size:17
Alignment explanation
Indices: 67836394--67836425 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67836384 TAGTTGGGGT
67836394 AAACTG-AAACTGTAGG
1 AAACTGAAAACTGTAGG
67836410 AAACTGAAAACTGTAG
1 AAACTGAAAACTGTAG
67836426 TGAGACCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (17 bp):
AAACTGAAAACTGTAGG
Found at i:67841062 original size:52 final size:52
Alignment explanation
Indices: 67840983--67841089 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
67840973 GTCTATTCTG
* *
67840983 CTGGTTAAAGTGCTATGGCACACTCATGGTTCGGAAGAGGCCATGTGGGAAC
1 CTGGTTAAAGTGCTATGGCACAATCATGGTTCGGAAGAGGCCATGTAGGAAC
67841035 CTGGTTAAAGTGCTATGGCACAATCATGGTTCGGAAGAGGCCATGTAGGAAC
1 CTGGTTAAAGTGCTATGGCACAATCATGGTTCGGAAGAGGCCATGTAGGAAC
67841087 CTG
1 CTG
67841090 AGGAAGCGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (52 bp):
CTGGTTAAAGTGCTATGGCACAATCATGGTTCGGAAGAGGCCATGTAGGAAC
Found at i:67843233 original size:26 final size:26
Alignment explanation
Indices: 67843164--67843262 Score: 99
Period size: 26 Copynumber: 3.8 Consensus size: 26
67843154 GGAGGAAGTA
** * *
67843164 TACTGTTACTGGTGGCTTTGCTACATT
1 TACTGTTACTGGCAGCTTTGCTGC-GT
* * *
67843191 TACTGATATTGGTAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
**
67843217 TACTGTTACTGGCAGCTTTATTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
*
67843243 TACTATTACTGGCAGCTTTG
1 TACTGTTACTGGCAGCTTTG
67843263 ATGTGATATT
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
26 40 0.67
27 20 0.33
ACGTcount: A:0.16, C:0.18, G:0.23, T:0.42
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGT
Found at i:67845173 original size:19 final size:19
Alignment explanation
Indices: 67845149--67845185 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
67845139 TTTTAATATA
67845149 CTTGTAATTTCAAACTATC
1 CTTGTAATTTCAAACTATC
67845168 CTTGTAATTTCAAACTAT
1 CTTGTAATTTCAAACTAT
67845186 GGTAGCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.43
Consensus pattern (19 bp):
CTTGTAATTTCAAACTATC
Found at i:67852065 original size:47 final size:47
Alignment explanation
Indices: 67852007--67852267 Score: 452
Period size: 47 Copynumber: 5.5 Consensus size: 47
67851997 CAGCCAAGAC
67852007 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
67852054 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
67852101 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
67852148 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
67852197 CA-TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 -AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
67852244 AGTGTATATGTGTGATAAGGCCTA
1 AGTGTATATATGTGATAAGGCCTA
67852268 TGTGACAGCC
Statistics
Matches: 207, Mismatches: 3, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
46 1 0.00
47 160 0.77
49 45 0.22
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:67852186 original size:96 final size:95
Alignment explanation
Indices: 67852005--67852267 Score: 458
Period size: 96 Copynumber: 2.8 Consensus size: 95
67851995 TTCAGCCAAG
67852005 ACAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 ACAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
67852070 AAGGCCTAATAGCCGATGTGATGAATGTGA
66 AAGGCCTAATAGCCGATGTGATGAATGTGA
*
67852100 A-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ACAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
*
67852164 ATAAGGCCTAATGGCCGATGTGATGAATGTGA
64 ATAAGGCCTAATAGCCGATGTGATGAATGTGA
* *
67852196 ACA-TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 ACAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
67852260 AAGGCCTA
66 AAGGCCTA
67852268 TGTGACAGCC
Statistics
Matches: 160, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
94 69 0.43
95 1 0.01
96 89 0.56
97 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (95 bp):
ACAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCTAATAGCCGATGTGATGAATGTGA
Found at i:67853908 original size:40 final size:40
Alignment explanation
Indices: 67853864--67854065 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
67853854 TTTGAATGTG
* * *
67853864 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
* *
67853904 TCCGGACTAAGAT-CC-AAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
67853942 TTCCGGGCTAAG--CCGAAGGCATTTGCGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
67853981 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
67854021 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
67854061 TCCGG
1 TCCGG
67854066 TTAAATTCCG
Statistics
Matches: 135, Mismatches: 19, Indels: 16
0.79 0.11 0.09
Matches are distributed among these distances:
37 2 0.01
38 31 0.23
39 23 0.17
40 78 0.58
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:67874011 original size:29 final size:30
Alignment explanation
Indices: 67873934--67874013 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
67873924 TAATAATAAC
*
67873934 AACCACGCACACTTAGTGCCATGTACTTTAA
1 AACC-CGCACACTTAGTGCCATGCACTTTAA
* *
67873965 AACTCGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTTAA
*
67873994 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67874014 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 22 0.50
30 19 0.43
31 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGCACTTTAA
Found at i:67882283 original size:29 final size:29
Alignment explanation
Indices: 67882244--67882322 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
67882234 CTTAATAATC
*
67882244 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
67882274 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
67882303 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67882323 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:67889718 original size:19 final size:19
Alignment explanation
Indices: 67889694--67889731 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
67889684 ATAGGGGCAT
67889694 GCCCGTGTGCCTTTGACAC
1 GCCCGTGTGCCTTTGACAC
67889713 GCCCGTGTGCCTTTGACAC
1 GCCCGTGTGCCTTTGACAC
67889732 ATCCGTGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.37, G:0.26, T:0.26
Consensus pattern (19 bp):
GCCCGTGTGCCTTTGACAC
Found at i:67889737 original size:19 final size:19
Alignment explanation
Indices: 67889695--67889739 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
67889685 TAGGGGCATG
*
67889695 CCCGTGTGCCTTTGACACG
1 CCCGTGTGCCTTTGACACA
67889714 CCCGTGTGCCTTTGACACA
1 CCCGTGTGCCTTTGACACA
*
67889733 TCCGTGT
1 CCCGTGT
67889740 CCTCAGGCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.11, C:0.36, G:0.24, T:0.29
Consensus pattern (19 bp):
CCCGTGTGCCTTTGACACA
Found at i:67891611 original size:50 final size:50
Alignment explanation
Indices: 67891450--67891707 Score: 259
Period size: 48 Copynumber: 5.3 Consensus size: 50
67891440 GGTGTCGACA
* * *
67891450 CCATGTCCCAGACATGGTCATACACT-G-GCTCATAC-ATCAAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTATCAAAGCCGATG
67891498 CCATGTCCCAGACATGGTCTTACACTAGCT-TACA-C-ATCAAAGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CATCTATCAAAGCCGATG
* * * *
67891546 CCATGTCCCAAACATGGTCATACACTGGCTCTCATCTATCAATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCAAAGCCGATG
* * * * **
67891596 CCATGTTCTAGACATGGTCTTACACTA--ACACA--TATC-AAGCTAATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCAAAGCCGATG
* * * * *
67891641 CCATGTCCTAGACATGGTCTTACACTAGCTCTCATATTTCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCAAAGCCGATG
67891691 CCATGTCCCAGACATGG
1 CCATGTCCCAGACATGG
67891708 AATTACTCAT
Statistics
Matches: 174, Mismatches: 25, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
45 32 0.18
46 4 0.02
47 3 0.02
48 70 0.40
49 7 0.04
50 58 0.33
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTATCAAAGCCGATG
Found at i:67891688 original size:95 final size:96
Alignment explanation
Indices: 67891450--67891707 Score: 315
Period size: 95 Copynumber: 2.7 Consensus size: 96
67891440 GGTGTCGACA
* * *
67891450 CCATGTCCCAGACATGGTCATACACTG-GCTCATACATCAAAGTCGATGCCATGTCCCAGACATG
1 CCATGTCCCAGACATGGTCATACACTGCTCTCATATATCAAAGCCGATGCCATGTCCCAGACATG
* *
67891514 GTCTTACACTAGCTTACACATCAAAGCCGATG
66 GTCTTACACTAAC-TACACATCAAAGCCAATG
* * * * *
67891546 CCATGTCCCAAACATGGTCATACACTGGCTCTCATCTATCAATGCCGATGCCATGTTCTAGACAT
1 CCATGTCCCAGACATGGTCATACACT-GCTCTCATATATCAAAGCCGATGCCATGTCCCAGACAT
* *
67891611 GGTCTTACACTAAC-ACATATC-AAGCTAATG
65 GGTCTTACACTAACTACACATCAAAGCCAATG
* * * * *
67891641 CCATGTCCTAGACATGGTCTTACACTAGCTCTCATATTTCGAGGCCGATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCATACACT-GCTCTCATATATCAAAGCCGATGCCATGTCCCAGACAT
67891706 GG
65 GG
67891708 AATTACTCAT
Statistics
Matches: 138, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
95 64 0.46
96 31 0.22
97 1 0.01
98 42 0.30
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (96 bp):
CCATGTCCCAGACATGGTCATACACTGCTCTCATATATCAAAGCCGATGCCATGTCCCAGACATG
GTCTTACACTAACTACACATCAAAGCCAATG
Found at i:67892403 original size:20 final size:19
Alignment explanation
Indices: 67892362--67892404 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
67892352 TGTAGCAACT
* *
67892362 CAAAATTCCAATTATTTCA
1 CAAAATTCCAATCATTTAA
*
67892381 CAAAATTCCCATCCATTTAA
1 CAAAATTCCAAT-CATTTAA
67892401 CAAA
1 CAAA
67892405 CTTTACAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (19 bp):
CAAAATTCCAATCATTTAA
Found at i:67894787 original size:49 final size:48
Alignment explanation
Indices: 67894620--67894804 Score: 248
Period size: 48 Copynumber: 3.9 Consensus size: 48
67894610 TACGAAGTCT
* *
67894620 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
** *
67894668 CATATCAACACCGATGCCATGTCCCAAACATGGTC-TACACTGGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* *
67894715 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-T
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-ACA
* * *
67894763 CATCTCGGATGCCGATGCCATGTCCTAGACATGGTCTTACAC
1 CATATC-AATGCCGATGCCATGTCCCAGACATGGTCTTACAC
67894805 GGGACCTCAT
Statistics
Matches: 121, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
47 43 0.36
48 44 0.36
49 34 0.28
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.24
Consensus pattern (48 bp):
CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
Found at i:67903133 original size:12 final size:12
Alignment explanation
Indices: 67903116--67903140 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67903106 CACACATTCT
67903116 CGTGTGCTAGGC
1 CGTGTGCTAGGC
67903128 CGTGTGCTAGGC
1 CGTGTGCTAGGC
67903140 C
1 C
67903141 ATGCCAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.24
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:67905774 original size:11 final size:11
Alignment explanation
Indices: 67905743--67905785 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
67905733 ATAACTCAAA
67905743 TGTTTTTAATG
1 TGTTTTTAATG
*
67905754 TG--TTTGATG
1 TGTTTTTAATG
67905763 TGTTTTTAATG
1 TGTTTTTAATG
67905774 TGTTTGTTAATG
1 TGTTT-TTAATG
67905786 CTTGTAGGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 8 0.30
11 13 0.48
12 6 0.22
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.60
Consensus pattern (11 bp):
TGTTTTTAATG
Found at i:67910645 original size:39 final size:40
Alignment explanation
Indices: 67910600--67910767 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
67910590 CGGGGTTTAG
* * *
67910600 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
67910639 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
67910679 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
67910719 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
67910760 CCGGATAT
1 CCGGATAT
67910768 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:67910750 original size:41 final size:40
Alignment explanation
Indices: 67910623--67910767 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
67910613 CTCGCACAAG
* * * * *
67910623 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
67910663 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
67910703 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
67910744 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
67910768 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:67915502 original size:27 final size:27
Alignment explanation
Indices: 67915472--67915558 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
67915462 TAAGTTGTAA
* * *
67915472 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
67915499 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
67915526 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
67915553 AATTAC
1 AATTAC
67915559 AGAGATACTC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:67915578 original size:54 final size:53
Alignment explanation
Indices: 67915468--67915582 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 53
67915458 TGGATAAGTT
* *
67915468 GTAAAATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTATAGG
1 GTAAAA-TACTAAAATACCCCTATAAGGTAGAATTACAGAAATACCCTTATAGG
* * * * * *
67915522 GTAGAAATACTGAAATACCCCTATAGGGTAGAATTACAGAGATACTCTTGTGGG
1 GTA-AAATACTAAAATACCCCTATAAGGTAGAATTACAGAAATACCCTTATAGG
67915576 GTAAAAT
1 GTAAAAT
67915583 TACCATTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
53 4 0.08
54 45 0.87
55 3 0.06
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (53 bp):
GTAAAATACTAAAATACCCCTATAAGGTAGAATTACAGAAATACCCTTATAGG
Found at i:67915609 original size:27 final size:26
Alignment explanation
Indices: 67915579--67915638 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
67915569 TTGTGGGGTA
*
67915579 AAATTACCATTTTGCCCCTAGGGTGTT
1 AAATGACCATTTTGCCCCTAGGGTG-T
* *
67915606 AAATGACTATTTTGCCCCTAGTGTGT
1 AAATGACCATTTTGCCCCTAGGGTGT
67915632 AAATGAC
1 AAATGAC
67915639 TAACTTGTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (26 bp):
AAATGACCATTTTGCCCCTAGGGTGT
Found at i:67915975 original size:8 final size:8
Alignment explanation
Indices: 67915959--67916014 Score: 67
Period size: 8 Copynumber: 7.0 Consensus size: 8
67915949 TTGGGCTAAA
67915959 AACGGGCC
1 AACGGGCC
*
67915967 AATGGGCC
1 AACGGGCC
*
67915975 AACGGGCA
1 AACGGGCC
*
67915983 AATGGGCC
1 AACGGGCC
*
67915991 AACGGGCA
1 AACGGGCC
*
67915999 AATGGGCC
1 AACGGGCC
67916007 AACGGGCC
1 AACGGGCC
67916015 CACTTTGGTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.38, T:0.05
Consensus pattern (8 bp):
AACGGGCC
Found at i:67915980 original size:16 final size:16
Alignment explanation
Indices: 67915959--67916013 Score: 101
Period size: 16 Copynumber: 3.4 Consensus size: 16
67915949 TTGGGCTAAA
*
67915959 AACGGGCCAATGGGCC
1 AACGGGCAAATGGGCC
67915975 AACGGGCAAATGGGCC
1 AACGGGCAAATGGGCC
67915991 AACGGGCAAATGGGCC
1 AACGGGCAAATGGGCC
67916007 AACGGGC
1 AACGGGC
67916014 CCACTTTGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.29, C:0.27, G:0.38, T:0.05
Consensus pattern (16 bp):
AACGGGCAAATGGGCC
Found at i:67922766 original size:27 final size:27
Alignment explanation
Indices: 67922724--67922826 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
67922714 TGGATAAGTT
* * *
67922724 GTAGAATTACTGAAATTCCCATGTAAG
1 GTAGAATTACCGAAATACCCATATAAG
* * *
67922751 GTAGAATTACCAAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCATATAAG
* *
67922778 GTAGAAATACCGAAATACTCCA-ATAGG
1 GTAGAATTACCGAAATAC-CCATATAAG
* *
67922805 GTAGAATTATCGAGATACCCAT
1 GTAGAATTACCGAAATACCCAT
67922827 GTGGGGTAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
26 3 0.05
27 57 0.92
28 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCATATAAG
Found at i:67927381 original size:46 final size:46
Alignment explanation
Indices: 67927314--67927488 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
67927304 TGTAACCCGC
* *
67927314 CCATAAGGGAACTCGGACTCAACTCAATGAGCTCGGGTGCTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGCTCACAT
* **
67927360 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGCTC-ACAT
* *** * * *
67927406 ACATCTCTCGAACTCGGACTCAACTCAACGAG-TTGGG-ACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGTGC--TCACAT
*
67927453 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67927489 ATGCCCAAAT
Statistics
Matches: 103, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 68 0.66
47 31 0.30
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGCTCACAT
Found at i:67927454 original size:93 final size:93
Alignment explanation
Indices: 67927322--67927491 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
67927312 GCCCATAAGG
* *
67927322 GAACTCGGACTCAACTCAATGAGCTCGGGTGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGTACTCACATCCATAAGTGAACTCGGACTCAACTCAA
67927387 CGAGCTCGGATGTCTAGTTACATCTCTC
66 CGAGCTCGGATGTCTAGTTACATCTCTC
* *
67927415 GAACTCGGACTCAACTCAACGAG-TTGGG-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTCGGGTAC--TCACATCCATAAGTGAACTCGGACTCAACTC
*
67927478 AACGAGTTCGGATG
64 AACGAGCTCGGATG
67927492 CCCAAATATC
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
91 1 0.01
92 4 0.06
93 65 0.93
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGTACTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGTCTAGTTACATCTCTC
Found at i:67932555 original size:42 final size:43
Alignment explanation
Indices: 67932448--67932605 Score: 132
Period size: 43 Copynumber: 3.7 Consensus size: 43
67932438 TCTGAGACAC
* * *
67932448 CGTGTTAGACCGTGTCTGGGACA-CAGGCCTCG--ATTGAGATTT
1 CGTGTAAGACCCTGTCTGGGACATC-GGCATCGATATTGA-ATTT
*
67932490 ACGTATAAG-CCCATGTCTGGGACATCGGCATC-ATATCT-AATTT
1 -CGTGTAAGACCC-TGTCTGGGACATCGGCATCGATAT-TGAATTT
** *
67932533 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAATTT
* *
67932576 CATGTAAGACCAC-GTCTGAGACATCGGCAT
1 CGTGTAAGACC-CTGTCTGGGACATCGGCAT
67932606 TGTACTTGTT
Statistics
Matches: 94, Mismatches: 12, Indels: 18
0.76 0.10 0.15
Matches are distributed among these distances:
42 27 0.29
43 61 0.65
44 5 0.05
45 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCCTGTCTGGGACATCGGCATCGATATTGAATTT
Found at i:67932593 original size:85 final size:85
Alignment explanation
Indices: 67932448--67932605 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 85
67932438 TCTGAGACAC
* * * * * * *
67932448 CGTGTTAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGCCCATGTCTGGGAC
1 CGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGAGAC
67932513 ATCGGCATCATATCTAATTT
66 ATCGGCATCATATCTAATTT
* *
67932533 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGAG
1 CGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTGAG
67932596 ACATCGGCAT
64 ACATCGGCAT
67932606 TGTACTTGTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (85 bp):
CGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGAGAC
ATCGGCATCATATCTAATTT
Found at i:67935175 original size:13 final size:13
Alignment explanation
Indices: 67935157--67935181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67935147 TGTAAAATGA
67935157 AAATGTGAAGGTT
1 AAATGTGAAGGTT
67935170 AAATGTGAAGGT
1 AAATGTGAAGGT
67935182 GCTTAGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (13 bp):
AAATGTGAAGGTT
Found at i:67936246 original size:43 final size:43
Alignment explanation
Indices: 67936197--67936352 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
67936187 TATGTGTTCT
* * *
67936197 CGAGTAAGACCACGTCTGAGACGTTGGCTTCGATATGTAGTTA
1 CGAGTAAGACCATGTCTGGGACGTTGGCATCGATATGTAGTTA
* *
67936240 CGAGTAAGACCATGTCTGGGACATTGGCATCG-TAT-TTGATT-
1 CGAGTAAGACCATGTCTGGGACGTTGGCATCGATATGTAG-TTA
* *
67936281 CGTGTAAGACC-TGTCTGGGACAG-TGGCATCGATATG-AGATA
1 CGAGTAAGACCATGTCTGGGAC-GTTGGCATCGATATGTAGTTA
*
67936322 -GCATGTAAGACCAAGTCTGGGACGTTGGCAT
1 CG-A-GTAAGACCATGTCTGGGACGTTGGCAT
67936353 TGTATGATAT
Statistics
Matches: 93, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
40 20 0.22
41 16 0.17
42 14 0.15
43 43 0.46
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
CGAGTAAGACCATGTCTGGGACGTTGGCATCGATATGTAGTTA
Found at i:67938909 original size:11 final size:12
Alignment explanation
Indices: 67938886--67938914 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
67938876 GAACTGAATC
67938886 AAATTCAAAAAA
1 AAATTCAAAAAA
67938898 AAATTCAAAAAA
1 AAATTCAAAAAA
67938910 AAATT
1 AAATT
67938915 TTGAGTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (12 bp):
AAATTCAAAAAA
Found at i:67941257 original size:13 final size:13
Alignment explanation
Indices: 67941239--67941263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67941229 TATTATACAC
67941239 ATTTTGTGTTAAT
1 ATTTTGTGTTAAT
67941252 ATTTTGTGTTAA
1 ATTTTGTGTTAA
67941264 AAATAATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
ATTTTGTGTTAAT
Found at i:67941871 original size:39 final size:39
Alignment explanation
Indices: 67941846--67941987 Score: 221
Period size: 39 Copynumber: 3.6 Consensus size: 39
67941836 TGCTAGTGAA
**
67941846 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTGT
*
67941886 TATATCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTGT
1 TATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTGT
*
67941926 TATATCCGACTAAGTCCCGAAGGCATTTGTGCGAGTTGT
1 TATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGT
*
67941965 TATATCCGGCTAAATCCCGAAGG
1 TATATCCGGCTAAGTCCCGAAGG
67941988 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 51 0.54
40 44 0.46
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
TATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGT
Found at i:67941899 original size:40 final size:39
Alignment explanation
Indices: 67941824--67941987 Score: 213
Period size: 39 Copynumber: 4.2 Consensus size: 39
67941814 AGACTAAGAT
* * * *
67941824 CCGAAGGCA-TTCTGCTAGTGAATATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTATATCC-GGCTAAGTC
*
67941863 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTATATCC-GGCTAAGTC
* * *
67941903 CCAAAGGCATTTGTGCGAGTTGTTATATCCGACTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTATATCCGGCTAAGTC
* *
67941942 CCGAAGGCATTTGTGCGAGTTGTTATATCCGGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTATTATATCCGGCTAAGTC
67941981 CCGAAGG
1 CCGAAGG
67941988 TACTTGGGTT
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
39 60 0.53
40 53 0.47
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTATTATATCCGGCTAAGTC
Found at i:67945680 original size:47 final size:47
Alignment explanation
Indices: 67945576--67946180 Score: 1031
Period size: 47 Copynumber: 12.7 Consensus size: 47
67945566 ATGATAGTAT
67945576 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
67945625 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67945672 GGCCTAATGGCCGATGTGA--AATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
67945717 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGTATATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-G-ATA-A
67945767 TGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 ---G-----GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67945822 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67945869 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67945916 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67945963 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67946010 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67946057 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
67946103 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGATAC
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67946148 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
67946181 CTCGAAGGGC
Statistics
Matches: 538, Mismatches: 3, Indels: 33
0.94 0.01 0.06
Matches are distributed among these distances:
44 10 0.02
45 72 0.13
46 38 0.07
47 333 0.62
48 1 0.00
49 36 0.07
50 1 0.00
52 1 0.00
55 1 0.00
56 3 0.01
57 1 0.00
58 41 0.08
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:67946354 original size:37 final size:37
Alignment explanation
Indices: 67946298--67946376 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
67946288 CCGAGCTCTA
* * *
67946298 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67946335 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67946372 AAGAC
1 AAGAC
67946377 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:67948274 original size:43 final size:43
Alignment explanation
Indices: 67948226--67948328 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
67948216 TTGGTTTTCA
67948226 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
67948269 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
67948312 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
67948329 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:67948345 original size:29 final size:29
Alignment explanation
Indices: 67948310--67948383 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
67948300 GTTGTGAGAT
* *
67948310 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
67948339 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
67948368 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
67948384 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:67948817 original size:40 final size:40
Alignment explanation
Indices: 67948694--67948929 Score: 201
Period size: 40 Copynumber: 5.9 Consensus size: 40
67948684 TCGAATGATG
** *
67948694 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
67948734 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
67948774 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
67948814 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
67948854 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
67948894 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
67948930 CGTGTATTCG
Statistics
Matches: 160, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 140 0.88
41 19 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:67948830 original size:80 final size:80
Alignment explanation
Indices: 67948694--67948914 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 80
67948684 TCGAATGATG
* * * *
67948694 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGTTCCGAAGAGCA
* *
67948756 TTGGTGCGAGTTACTAAA
64 TTCGTGCGAGTGA-TAAA
* *
67948774 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
* *
67948839 CGTGCTAGTGATATA
66 CGTGCGAGTGATAAA
* ** * * * * *
67948854 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAG
67948915 TAATCATGCT
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 92 0.78
81 20 0.17
82 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATT
CGTGCGAGTGATAAA
Found at i:67952394 original size:47 final size:47
Alignment explanation
Indices: 67952331--67952874 Score: 1028
Period size: 47 Copynumber: 11.7 Consensus size: 47
67952321 ATGATAGTAT
67952331 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952378 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952425 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952472 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952519 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952566 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952613 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952660 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952707 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952753 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
67952799 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
67952846 GGCC-AAT-G--GATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
67952875 CCCGAAGGGC
Statistics
Matches: 494, Mismatches: 1, Indels: 7
0.98 0.00 0.01
Matches are distributed among these distances:
43 16 0.03
44 4 0.01
45 1 0.00
46 95 0.19
47 378 0.77
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:67953047 original size:36 final size:37
Alignment explanation
Indices: 67952992--67953069 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
67952982 CCGAGCTCTA
* *
67952992 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
67953028 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
67953065 AAGAC
1 AAGAC
67953070 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.