Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 209 of 290
Found at i:67954455 original size:52 final size:52
Alignment explanation
Indices: 67954367--67954470 Score: 147
Period size: 52 Copynumber: 2.0 Consensus size: 52
67954357 TTTGAACTCT
* * *
67954367 GTTAACACCTCGTGTTTGACTCCGGCGACGGCCTCGGGTTCGGGGTGTTACA
1 GTTAACACCTCGTGTTCGACTCCGGCAACGGCCTCGGGTACGGGGTGTTACA
* *
67954419 GTTAACACC-CTGTGTTCGACTCCGGTAACGGTCTCGGGTACGGGGTGTTACA
1 GTTAACACCTC-GTGTTCGACTCCGGCAACGGCCTCGGGTACGGGGTGTTACA
67954471 ATTTTATTGG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
51 1 0.02
52 45 0.98
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.27
Consensus pattern (52 bp):
GTTAACACCTCGTGTTCGACTCCGGCAACGGCCTCGGGTACGGGGTGTTACA
Found at i:67960834 original size:38 final size:38
Alignment explanation
Indices: 67960783--67960966 Score: 223
Period size: 40 Copynumber: 4.8 Consensus size: 38
67960773 CGGACTAAGA
67960783 CCGAAGGCATTTGTGC-AGTGACTATATCCGGGCAAGT
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCAAGT
* *
67960820 CCCGAAGGCATTTGTGCGAGTTACTTATATCCGGGCTATGT
1 -CCGAAGGCATTTGTGCGAGTGAC-TATATCCGGGC-AAGT
* *
67960861 TCGAAGGCATTTGTGCGAGT-ACTATATCGCGGCCAAGT
1 CCGAAGGCATTTGTGCGAGTGACTATATC-CGGGCAAGT
* *
67960899 CCGAA-GCATTTGTG-TAGTTACTATATCCGGGCTAAGT
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGC-AAGT
*
67960936 CCGAAGGCATTTGTGCGAGTTGGCTATATCC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCC
67960967 CTGCAAATCC
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
36 7 0.06
37 26 0.21
38 38 0.30
39 13 0.10
40 39 0.31
41 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCAAGT
Found at i:67960952 original size:75 final size:79
Alignment explanation
Indices: 67960772--67960966 Score: 267
Period size: 78 Copynumber: 2.5 Consensus size: 79
67960762 CAGATGATAA
* * *
67960772 CCGGACTAAGACCGAAGGCATTTGTGC-AGTGACTATATCCGGGCAAGTCCCGAAGGCATTTGTG
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTATATCCGGCCAAGTCCCGAAGGCATTTGTG
67960836 CGAGTTACTTATAT
66 CGAGTTACTTATAT
* *
67960850 CCGGGCTATGTTCGAAGGCATTTGTGCGAGT-ACTATATCGCGGCCAAGT-CCGAA-GCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTATATC-CGGCCAAGTCCCGAAGGCATTTGT
*
67960912 G-TAGTTAC-TATAT
65 GCGAGTTACTTATAT
*
67960925 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTGGCTATATCC
1 CCGGGCTAAGTCCGAAGGCATTTGTGCGAG-TGACTATATCC
67960967 CTGCAAATCC
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
75 33 0.32
76 8 0.08
77 16 0.15
78 36 0.35
79 11 0.11
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACTATATCCGGCCAAGTCCCGAAGGCATTTGTG
CGAGTTACTTATAT
Found at i:67960982 original size:40 final size:38
Alignment explanation
Indices: 67960783--67960966 Score: 232
Period size: 38 Copynumber: 4.8 Consensus size: 38
67960773 CGGACTAAGA
*
67960783 CCGAAGGCATTTGTGC-AGTGACTATATCCGGGCAAGT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCAAGT
*
67960820 CCCGAAGGCATTTGTGCGAGTTACTTATATCCGGGCTATGT
1 -CCGAAGGCATTTGTGCGAGTTAC-TATATCCGGGC-AAGT
* *
67960861 TCGAAGGCATTTGTGCGAG-TACTATATCGCGGCCAAGT
1 CCGAAGGCATTTGTGCGAGTTACTATATC-CGGGCAAGT
*
67960899 CCGAA-GCATTTGTG-TAGTTACTATATCCGGGCTAAGT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGC-AAGT
*
67960936 CCGAAGGCATTTGTGCGAGTTGGCTATATCC
1 CCGAAGGCATTTGTGCGAGTT-ACTATATCC
67960967 CTGCAAATCC
Statistics
Matches: 127, Mismatches: 10, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
36 6 0.05
37 27 0.21
38 38 0.30
39 16 0.13
40 37 0.29
41 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCAAGT
Found at i:67968653 original size:40 final size:40
Alignment explanation
Indices: 67968605--67968769 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
67968595 GGACTAAGAT
*
67968605 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
67968645 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
67968685 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
67968725 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAAT-
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
67968763 CCGAAGG
1 CCGAAGG
67968770 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 7 0.06
39 6 0.05
40 104 0.88
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:67972120 original size:15 final size:15
Alignment explanation
Indices: 67972100--67972130 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67972090 TATAATGAAA
67972100 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
*
67972115 AAATGAGAGAAAAAG
1 AAATGAAAGAAAAAG
67972130 A
1 A
67972131 GTGTGAAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:67972187 original size:21 final size:20
Alignment explanation
Indices: 67972124--67972187 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
67972114 GAAATGAGAG
**
67972124 AAAAAGAGTGTGAAAGAAAGA
1 AAAAAGAGAATGAAA-AAAGA
67972145 AAAAAGAGAATGAGAAAAAGA
1 AAAAAGAGAATGA-AAAAAGA
*
67972166 AAAATGA-AATTGAAAAAGAGA
1 AAAAAGAGAA-TGAAAAA-AGA
67972187 A
1 A
67972188 GGAAAAAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 6 0.16
21 29 0.78
22 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.09
Consensus pattern (20 bp):
AAAAAGAGAATGAAAAAAGA
Found at i:67972333 original size:17 final size:19
Alignment explanation
Indices: 67972303--67972344 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
67972293 GTTGTCGATG
67972303 AAAAAGAAATGAGA-AAAA
1 AAAAAGAAATGAGAGAAAA
* *
67972321 AAAAAGCAA-GAGAGAAAG
1 AAAAAGAAATGAGAGAAAA
67972339 AAAAAG
1 AAAAAG
67972345 TGAGGAGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.02
Consensus pattern (19 bp):
AAAAAGAAATGAGAGAAAA
Found at i:67972567 original size:36 final size:36
Alignment explanation
Indices: 67972520--67972590 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
67972510 AAAAGGTAAG
*
67972520 CAAGGTATGAGTTTTGAAGTTTTTAAAACATATCAT
1 CAAGGTATGAGTTTTGAAGTTTTTAAAACACATCAT
67972556 CAAGGTATGAGTTTTGAAGTTTTTAAAACACATCA
1 CAAGGTATGAGTTTTGAAGTTTTTAAAACACATCA
67972591 GCCTCATTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (36 bp):
CAAGGTATGAGTTTTGAAGTTTTTAAAACACATCAT
Found at i:67990178 original size:20 final size:18
Alignment explanation
Indices: 67990145--67990181 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
67990135 GCAACTCATA
67990145 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
67990163 ATTTACAACTTATTTTACA
1 ATTT-CAAC-TATTTTACA
67990182 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:67993033 original size:46 final size:44
Alignment explanation
Indices: 67992959--67993160 Score: 151
Period size: 46 Copynumber: 4.5 Consensus size: 44
67992949 ATCGATGCCG
* * * *
67992959 TGTCCCAGACAGGTCTTACACTGACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACATTGACACATCT---CGTAGCCGACGCA
*
67993005 TGTCCTAGACATGTCTTACATT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACATTGA-CACATCTCGTAGCCGACGCA
* * * *
67993049 TGTCCGAGACATGTCTGACATTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACATTGAC--ACATCTCGTA-GCCGACGCA
* * * * * *
67993095 TGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACATTGACACATC-T-C-GTAGCCGACGCA
67993141 TGTCCCAGACATGTCTTACA
1 TGTCCCAGACATGTCTTACA
67993161 CTAGCCCTCG
Statistics
Matches: 131, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.04
44 31 0.24
45 3 0.02
46 92 0.70
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACATTGACACATCTCGTAGCCGACGCA
Found at i:67993161 original size:46 final size:46
Alignment explanation
Indices: 67993002--67993213 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 46
67992992 CCGTGCTGAC
* * * *
67993002 GCATGTCCTAGACATGTCTTACATTAGC--ACATCTCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCG-AGGCCGAT
* * *
67993046 GCATGTCCGAGACATGTCTGACATTGGCTAACATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAGGCCGAT
** * *
67993092 GCATGTCCCAGACATGTCTTACACTGGCTCTCATACT-GTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTAACAT-CTCGAGGCCGAT
* *** * * *
67993138 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAGGCCGAT
*
67993184 GCCATGTCCCATACATGGTCTTACACTGGC
1 G-CATGTCCCAGACAT-GTCTTACACTGGC
67993214 ACACAAATCT
Statistics
Matches: 141, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
44 25 0.18
45 3 0.02
46 86 0.61
47 15 0.11
48 12 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GCATGTCCCAGACATGTCTTACACTGGCTAACATCTCGAGGCCGAT
Found at i:67994858 original size:20 final size:18
Alignment explanation
Indices: 67994824--67994860 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
67994814 GCAATTCATA
67994824 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
67994842 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
67994861 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:67995668 original size:50 final size:51
Alignment explanation
Indices: 67995558--67995678 Score: 156
Period size: 50 Copynumber: 2.4 Consensus size: 51
67995548 CTGTTACAAT
* * * *
67995558 GAGTTACTTATTGCATGACTTAATTTAATGATGCAAACTTTAACTAACATG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATA
* *
67995609 GCAGTTACATAATGCATGTCATAATTT-ATTATGCAAAC-TTAACTAACATTA
1 G-AGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACA-TA
67995660 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
67995679 TTTATTAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
50 27 0.44
51 13 0.21
52 21 0.34
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (51 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATA
Found at i:67997875 original size:50 final size:49
Alignment explanation
Indices: 67997698--67997929 Score: 265
Period size: 49 Copynumber: 4.7 Consensus size: 49
67997688 TCTATTGTGA
* * * *
67997698 GGTCACGTGTGTAGTACTAAGTACAGGTTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAATT
*
67997747 GGT-AGCATGTGTAGTACTAAGTGCAGGCTACT--ATGCATACCCGATAACTT
1 GGTCA-CGTGTGTAGTACTAAGTGCAGGCTACTACATG--TACCCGATAA-TT
* * * **
67997797 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAATT
67997847 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTA-CCGAATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCG-ATAATT
* *
67997897 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
67997930 TGCGTACCAG
Statistics
Matches: 156, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
47 2 0.01
48 1 0.01
49 69 0.44
50 46 0.29
51 34 0.22
52 1 0.01
53 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCCGATAATT
Found at i:68002291 original size:5 final size:5
Alignment explanation
Indices: 68002281--68002308 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
68002271 GGATTTGTGA
68002281 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
68002309 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:68007615 original size:51 final size:49
Alignment explanation
Indices: 68007488--68007682 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
68007478 TCTATTGTGA
* *
68007488 GGTCACATGTGTAGTACTAAGTGCAGGCTACT-TCATGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAT-GTGTACCAGATAATT
* * *
68007537 GGTCGCATGTGTAGTACTAAGTGCAGGTTACTATGTGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * *
68007587 CGGTCACGTGTGTAGTACTAAGTACAGGTTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
68007637 GGTCGCATGTGTAGTACTCAGTGCAGGCTACTATGCGTACTAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
68007683 GTTTTGGCTA
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
49 79 0.63
50 5 0.04
51 42 0.33
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:68007661 original size:100 final size:100
Alignment explanation
Indices: 68007488--68007676 Score: 297
Period size: 100 Copynumber: 1.9 Consensus size: 100
68007478 TCTATTGTGA
* * *
68007488 GGTCACATGTGTAGTACTAAGTGCAGGCTACTTCATGTACCGGATAATTGGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTA
* *
68007553 CTAAGTGCAGGTTACTATGTGTACCCGATAACTTC
66 CTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
* * *
68007588 GGTCACGTGTGTAGTACTAAGTACAGGTTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTA
*
68007653 CTCAGTGCAGGCTACTATGCGTAC
66 CTAAGTGCAGGCTACTATGCGTAC
68007677 TAGATAGTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTACAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
Found at i:68012645 original size:49 final size:49
Alignment explanation
Indices: 68012575--68012748 Score: 258
Period size: 49 Copynumber: 3.5 Consensus size: 49
68012565 TGAGGTCATG
68012575 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
68012624 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
*
68012675 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
*
68012724 TGTGTAGTACTAAGTGTAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
68012749 GTGCATACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 66 0.60
50 4 0.04
51 40 0.36
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:68012747 original size:100 final size:100
Alignment explanation
Indices: 68012574--68012762 Score: 333
Period size: 100 Copynumber: 1.9 Consensus size: 100
68012564 ATGAGGTCAT
68012574 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
* *
68012639 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCATACCAGATAACTTCGATCAC
*
68012674 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
* *
68012739 GTAGGCTACTGTGCATACCAGATA
66 GCAGGCTACTATGCATACCAGATA
68012763 GCTTTGGCTA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCATACCAGATAACTTCGATCAC
Found at i:68012789 original size:100 final size:100
Alignment explanation
Indices: 68012574--68012795 Score: 295
Period size: 100 Copynumber: 2.2 Consensus size: 100
68012564 ATGAGGTCAT
* *
68012574 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
* * *
68012639 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCATACCAGATAACTTCGATCAA
* * *
68012674 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
* * * * *
68012739 GTAGGCTACTGTGCATACCAGATAGCTTTGGCTACAA
66 GCAGGCTACTATGCATACCAGATAAC-TTCGAT-CAA
68012776 GTGTG-A-AAATAAGTGCAGGC
1 GTGTGTAGAAATAAGTGCAGGC
68012796 AACTGAATAT
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
100 96 0.89
101 5 0.05
102 7 0.06
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (100 bp):
GTGTGTAGAAATAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCATACCAGATAACTTCGATCAA
Found at i:68017837 original size:49 final size:50
Alignment explanation
Indices: 68017750--68017992 Score: 224
Period size: 49 Copynumber: 4.9 Consensus size: 50
68017740 TATTGTGAGG
* * * *
68017750 TCACGTGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCGGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA-TGCGTACCAGATAATTAGA
* ** * *
68017799 TCGCATAAGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TTAGA
* * * ** ** *
68017850 TCACATGCGTAGTACTAAGT-CTAGGCTACTACGTGTATTAGATGGTTAGG
1 TCACATGTGTAGTACTAAGTGC-AGGCTACTATGCGTACCAGATAATTAGA
* * * * *
68017900 TCACGTGTGTAGTACTTAGTGCAGGCTATTACGCGTACCGGATAATT-GA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTAGA
*
68017949 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
68017993 GCTTTGGCTA
Statistics
Matches: 153, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 76 0.50
50 41 0.27
51 35 0.23
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTAGA
Found at i:68020349 original size:93 final size:93
Alignment explanation
Indices: 68020237--68020408 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
68020227 GCACGTAAGT
* *
68020237 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68020302 TGAGCTCGAATGCCTAGTTACATCTCTC
66 CGAGCTCGAATGCCTAGTTACATCTCTC
*
68020330 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
68020395 CGAGTTCGGATGCC
66 CGAGCTCGAATGCC
68020409 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCTC
Found at i:68020404 original size:46 final size:46
Alignment explanation
Indices: 68020232--68020404 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
68020222 AACCCGCACG
* *
68020232 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
* * *
68020278 TAAGTGAACTCGGACTCAACTCAATGAGCTC-GA-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--TCCA
*** *
68020324 TCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
*
68020371 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68020405 TGCCCAAACA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 29 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCA
Found at i:68020423 original size:46 final size:46
Alignment explanation
Indices: 68020234--68020424 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
68020224 CCCGCACGTA
** *
68020234 AGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT-ACATCC-T
* * *
68020279 AAGTGAACTCGGACTCAACTCAATGAGCTCGAATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CT
* * * * * *
68020329 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCATACATCCT
* *
68020373 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
68020419 AGTGAA
1 AGTGAA
68020425 ATGTCACTTG
Statistics
Matches: 113, Mismatches: 20, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
44 8 0.07
46 63 0.56
47 29 0.26
48 1 0.01
49 5 0.04
50 5 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
Found at i:68022413 original size:15 final size:15
Alignment explanation
Indices: 68022336--68022413 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
68022326 AGAAAACCGA
*
68022336 ATAAAGAAGTCCAAG
1 ATAAAGAAATCCAAG
* **
68022351 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
68022365 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
68022380 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
68022396 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
68022411 ATA
1 ATA
68022414 CGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 3 0.06
15 43 0.88
16 3 0.06
ACGTcount: A:0.54, C:0.15, G:0.19, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:68025400 original size:46 final size:46
Alignment explanation
Indices: 68025333--68025508 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
68025323 TGTAACCCGC
*
68025333 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * *
68025379 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAACGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * *
68025425 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
68025472 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68025509 TGCCCAAACA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 73 0.68
47 35 0.32
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:68025527 original size:46 final size:46
Alignment explanation
Indices: 68025338--68025528 Score: 135
Period size: 46 Copynumber: 4.1 Consensus size: 46
68025328 CCCGCCCATA
** *
68025338 AGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT-ACATCC-T
* * *
68025383 AAGTGAACTCGGACTCAACTCAACGAGCTCGAACGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACATC-CT
* * * * * *
68025433 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCATACATCCT
* *
68025477 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
68025523 AGTGAA
1 AGTGAA
68025529 ATGTCACTTG
Statistics
Matches: 114, Mismatches: 19, Indels: 24
0.73 0.12 0.15
Matches are distributed among these distances:
44 8 0.07
46 64 0.56
47 30 0.26
48 1 0.01
49 4 0.04
50 5 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATCCT
Found at i:68027024 original size:27 final size:27
Alignment explanation
Indices: 68026994--68027080 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
68026984 CAAAATAGTG
* * *
68026994 ATTTTACCCTACAAGGGTATGTCGGTC
1 ATTTTACACTACAAAGGTATGTCGGTA
* *
68027021 ATTTTACACTACAATGGTATTTCGGTA
1 ATTTTACACTACAAAGGTATGTCGGTA
* *
68027048 ATTTTACACTACAAAGGTATTTCGATA
1 ATTTTACACTACAAAGGTATGTCGGTA
68027075 ATTTTA
1 ATTTTA
68027081 TAATTCGGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAAGGTATGTCGGTA
Found at i:68027097 original size:27 final size:27
Alignment explanation
Indices: 68027067--68027348 Score: 302
Period size: 27 Copynumber: 10.4 Consensus size: 27
68027057 TACAAAGGTA
* * *
68027067 TTTCGATAATTTTATAATTCGGGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTG
*
68027094 TTTCGATAATTTTACAAATCGAGGGTA
1 TTTCGATAATTTTACAAATCGAGGGTG
*
68027121 TTTC-AGTAATTTTACAAATCAAGGGTG
1 TTTCGA-TAATTTTACAAATCGAGGGTG
* * *
68027148 TTTCGGTAATTTTATAAATCAAGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTG
* *
68027175 TTTC-AGTAATTTTACAAATCAATGGTG
1 TTTCGA-TAATTTTACAAATCGAGGGTG
* * * * *
68027202 TTTCGGTAATTTCACAAATTGAAGGTA
1 TTTCGATAATTTTACAAATCGAGGGTG
* *
68027229 TTTTGGTAATTTTACAAATCGAGGGTG
1 TTTCGATAATTTTACAAATCGAGGGTG
*
68027256 TTTCGATAATTTTACAAATCGAGAGTG
1 TTTCGATAATTTTACAAATCGAGGGTG
* * *
68027283 TTTC-ACTAATTTCACAAATCGGGGGTA
1 TTTCGA-TAATTTTACAAATCGAGGGTG
*
68027310 TTT-TAGTAATTTTACAAATCGAGGGTG
1 TTTCGA-TAATTTTACAAATCGAGGGTG
68027337 TTTCGATAATTT
1 TTTCGATAATTT
68027349 GACATATCAG
Statistics
Matches: 214, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.01
27 211 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TTTCGATAATTTTACAAATCGAGGGTG
Found at i:68027130 original size:81 final size:81
Alignment explanation
Indices: 68027036--68027348 Score: 351
Period size: 81 Copynumber: 3.9 Consensus size: 81
68027026 ACACTACAAT
* * * * *
68027036 GGTATTTCGGTAATTTTAC-ACTACAAAGGTATTTCGATAATTTTATAATTCGGGGGTGTTTCGA
1 GGTATTTCAGTAATTTTACAAAT-CAAAGGTATTTCGGTAATTTTATAAATCGAGGGTGTTTCGA
68027100 TAATTTTACAAATCGAG
65 TAATTTTACAAATCGAG
* * *
68027117 GGTATTTCAGTAATTTTACAAATCAAGGGTGTTTCGGTAATTTTATAAATCAAGGGTGTTTC-AG
1 GGTATTTCAGTAATTTTACAAATCAAAGGTATTTCGGTAATTTTATAAATCGAGGGTGTTTCGA-
* *
68027181 TAATTTTACAAATCAAT
65 TAATTTTACAAATCGAG
* * * ** * *
68027198 GGTGTTTCGGTAATTTCACAAATTGAAGGTATTTTGGTAATTTTACAAATCGAGGGTGTTTCGAT
1 GGTATTTCAGTAATTTTACAAATCAAAGGTATTTCGGTAATTTTATAAATCGAGGGTGTTTCGAT
68027263 AATTTTACAAATCGAG
66 AATTTTACAAATCGAG
* * * * *** ** *
68027279 AGTGTTTCACTAATTTCACAAATCGGGGGTATTTTAGTAATTTTACAAATCGAGGGTGTTTCGAT
1 GGTATTTCAGTAATTTTACAAATCAAAGGTATTTCGGTAATTTTATAAATCGAGGGTGTTTCGAT
68027344 AATTT
66 AATTT
68027349 GACATATCAG
Statistics
Matches: 200, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.00
81 196 0.98
82 3 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAAAGGTATTTCGGTAATTTTATAAATCGAGGGTGTTTCGAT
AATTTTACAAATCGAG
Found at i:68027399 original size:27 final size:27
Alignment explanation
Indices: 68027369--68027447 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 27
68027359 GGGAATTCCT
68027369 ACAAATTGAGGGTATTTCAGTAATTTC
1 ACAAATTGAGGGTATTTCAGTAATTTC
* *
68027396 AC-AATCGAGGGTATTTC-GATAATTTT
1 ACAAATTGAGGGTATTTCAG-TAATTTC
* * * *
68027422 ATAAATTGGGGGTAGTTCAATAATTT
1 ACAAATTGAGGGTATTTCAGTAATTT
68027448 TTCTTTATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 1 0.02
26 21 0.50
27 20 0.48
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
ACAAATTGAGGGTATTTCAGTAATTTC
Found at i:68027445 original size:99 final size:100
Alignment explanation
Indices: 68027268--68027447 Score: 231
Period size: 99 Copynumber: 1.8 Consensus size: 100
68027258 TCGATAATTT
* * *
68027268 TACAAATCGAGAGTGTTTCACTAATTTCACAAATCGGGGGTATTTTAGTAATTTTACAAATCGAG
1 TACAAATCGAGAGTATTTCACTAATTTCACAAATCGAGGGTATTTGAGTAATTTTACAAATCGAG
*
68027333 GGTGTTTCGATAATTTGACATATCAGGGGAATTCC
66 GGTGTTTCAATAATTTGACATATCAGGGGAATTCC
* * * * * *
68027368 TACAAATTGAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCGA-TAATTTTATAAATTGG
1 TACAAATCGAGAGTATTTCACTAATTTCACAAATCGAGGGTATTT-GAGTAATTTTACAAATCGA
68027431 GGGTAG-TTCAATAATTT
65 GGGT-GTTTCAATAATTT
68027448 TTCTTTATTA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
99 40 0.59
100 28 0.41
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.36
Consensus pattern (100 bp):
TACAAATCGAGAGTATTTCACTAATTTCACAAATCGAGGGTATTTGAGTAATTTTACAAATCGAG
GGTGTTTCAATAATTTGACATATCAGGGGAATTCC
Found at i:68027807 original size:28 final size:28
Alignment explanation
Indices: 68027746--68027851 Score: 113
Period size: 28 Copynumber: 3.8 Consensus size: 28
68027736 ATCCACACTT
* * *
68027746 ATTCATTTGGCCCCTTTAGGCCCAATCTC
1 ATTCATATGG-CCCATTAGGCCCAATCAC
* * *
68027775 GTTCACATGGCCTATTAGGCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
* * *
68027803 ATTCATATGACCCATTAAGCCTAATCAC
1 ATTCATATGGCCCATTAGGCCCAATCAC
*
68027831 ATTCATATGGCCCATCAGGCC
1 ATTCATATGGCCCATTAGGCC
68027852 TAACTACTTC
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 55 0.89
29 7 0.11
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.28
Consensus pattern (28 bp):
ATTCATATGGCCCATTAGGCCCAATCAC
Found at i:68032366 original size:20 final size:21
Alignment explanation
Indices: 68032328--68032366 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
68032318 AATGGTCATG
*
68032328 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
68032349 GATGA-TTACGAGTCACTT
1 GATGATTTAAGAGTCACTT
68032367 GTTGTTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:68034307 original size:22 final size:19
Alignment explanation
Indices: 68034261--68034303 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
68034251 GTGTTATTTT
68034261 GAAGTTATAAAAAAAATAC
1 GAAGTTATAAAAAAAATAC
68034280 GAAGTTATAAAAAAAA-AC
1 GAAGTTATAAAAAAAATAC
68034298 -AAGTTA
1 GAAGTTA
68034304 AGTTTTCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.25
18 2 0.08
19 16 0.67
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.21
Consensus pattern (19 bp):
GAAGTTATAAAAAAAATAC
Found at i:68036330 original size:37 final size:37
Alignment explanation
Indices: 68036280--68036358 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
68036270 TTATTACGAA
* * * *
68036280 GTCTTGCCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
68036317 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
68036354 GTCTT
1 GTCTT
68036359 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:68036627 original size:47 final size:47
Alignment explanation
Indices: 68036492--68037414 Score: 1418
Period size: 47 Copynumber: 19.4 Consensus size: 47
68036482 CATATTTATG
* * * * * * * *
68036492 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68036539 CACTTTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
* *
68036585 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
* * *
68036632 CACTTTCACATTCTTCACATCGGCTATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68036679 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
* *
68036726 CACTTTCACATTCATCACATCGACCATTTGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68036773 CACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68036820 CACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
68036867 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
* * * *
68036914 CACTTTCACATTCATCACATTGGCTATTAGGCCTTATCAAATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68036961 CACTTTCACATTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATA
1 CAC--T----TTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
68037014 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
* * *
68037061 CACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68037108 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68037155 CACTTTCACATTCACATTCATCACATCGACCATTAGGCCTTATCACACATATA
1 CAC--T----TTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68037208 CACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68037255 CACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
* *
68037302 CACTTTCACATTCATCGCATCGGCCATTTGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
*
68037349 CACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
68037396 CACTTTCACATTCA-CACAT
1 CACTTTCACATTCATCACAT
68037415 ATACACTTTC
Statistics
Matches: 823, Mismatches: 40, Indels: 27
0.92 0.04 0.03
Matches are distributed among these distances:
46 44 0.05
47 690 0.84
49 2 0.00
51 2 0.00
53 85 0.10
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
Found at i:68037413 original size:22 final size:22
Alignment explanation
Indices: 68037385--68037437 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
68037375 TTAGGCCTTA
68037385 TCACACATATACACTTTCACAT
1 TCACACATATACACTTTCACAT
68037407 TCACACATATACACTTTCACAT
1 TCACACATATACACTTTCACAT
68037429 TCATCACAT
1 TCA-CACAT
68037438 CGGCTATTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 25 0.83
23 5 0.17
ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32
Consensus pattern (22 bp):
TCACACATATACACTTTCACAT
Found at i:68037420 original size:69 final size:69
Alignment explanation
Indices: 68037338--68037484 Score: 267
Period size: 69 Copynumber: 2.1 Consensus size: 69
68037328 TTTGGCCTTA
*
68037338 TCACACATATACACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
68037403 ACAT
66 ACAT
*
68037407 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
68037472 ACAT
66 ACAT
68037476 TCATCACAT
1 TCA-CACAT
68037485 CGGCCATTAC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 70 0.93
70 5 0.07
ACGTcount: A:0.31, C:0.31, G:0.06, T:0.31
Consensus pattern (69 bp):
TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
ACAT
Found at i:68040837 original size:40 final size:40
Alignment explanation
Indices: 68040792--68040987 Score: 198
Period size: 40 Copynumber: 4.9 Consensus size: 40
68040782 CGAATACACG
* * * *
68040792 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* *** *
68040832 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *
68040872 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
* * *
68040912 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATGG
1 TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATAT-A
* * *
68040953 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGAACTTAGCCCGGA
68040988 CATCATTCAA
Statistics
Matches: 134, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
40 120 0.90
41 8 0.06
42 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
Found at i:68040948 original size:80 final size:81
Alignment explanation
Indices: 68040805--68040987 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
68040795 CCAGCATGAT
* * ***
68040805 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
68040870 T-ATCAC-TAGCACGAA
66 TGATCACTTAGCAC-AA
* * * *
68040885 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAG-CACGGAT
*
68040949 ATGGTCACTTAGCACAA
65 ATGATCACTTAGCACAA
*
68040966 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
68040988 CATCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 72 0.83
81 9 0.10
82 6 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
TGATCACTTAGCACAA
Found at i:68041331 original size:29 final size:29
Alignment explanation
Indices: 68041292--68041370 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68041282 CTTAATAATC
*
68041292 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68041322 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68041351 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68041371 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68041413 original size:43 final size:43
Alignment explanation
Indices: 68041352--68041454 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
68041342 TGCATTTCAA
68041352 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
68041395 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
68041438 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
68041455 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:68043350 original size:37 final size:37
Alignment explanation
Indices: 68043300--68043378 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68043290 TTATTACGAA
* * *
68043300 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
68043337 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
68043374 GTCTT
1 GTCTT
68043379 TAGAACTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:68043647 original size:47 final size:47
Alignment explanation
Indices: 68043497--68044291 Score: 1297
Period size: 47 Copynumber: 16.9 Consensus size: 47
68043487 CCCTTCGGGA
** * * * * * *
68043497 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68043544 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68043590 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
68043637 CTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68043684 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68043731 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68043778 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68043825 CTTATCACACATATACACTTTCACATTCATCACATCGGCCTTTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
68043872 CTCT-TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68043919 CTGATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68043966 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68044013 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68044060 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
68044107 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68044154 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68044201 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
68044248 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
68044292 CTATCATTTC
Statistics
Matches: 707, Mismatches: 38, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 40 0.06
47 666 0.94
48 1 0.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68049341 original size:30 final size:31
Alignment explanation
Indices: 68049297--68049356 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
68049287 AGGTCCAATC
* *
68049297 AGCTCACTTGAGCTTGTTT-CAGCTAGTTTG
1 AGCTCAATTGAGCTTCTTTCCAGCTAGTTTG
* *
68049327 AGCTCAATTTAGCTTCTTTCCAGCTCGTTT
1 AGCTCAATTGAGCTTCTTTCCAGCTAGTTT
68049357 CTTTTACTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (31 bp):
AGCTCAATTGAGCTTCTTTCCAGCTAGTTTG
Found at i:68051906 original size:25 final size:25
Alignment explanation
Indices: 68051872--68051966 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
68051862 GAGGATGTGC
*
68051872 AAAAGGGCTTTGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
68051897 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
68051922 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCG
68051947 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
68051967 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:68051979 original size:24 final size:24
Alignment explanation
Indices: 68051872--68051979 Score: 137
Period size: 25 Copynumber: 4.4 Consensus size: 24
68051862 GAGGATGTGC
*
68051872 AAAAGGGCTTTGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTAT-G
*
68051897 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTA-TG
*
68051922 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAT-G
*
68051947 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATG
68051970 AAAAGAGGCT
1 AAAAG-GGCT
68051980 AGGCCTCCAA
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
23 5 0.07
24 8 0.11
25 62 0.83
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATG
Found at i:68052271 original size:31 final size:31
Alignment explanation
Indices: 68052213--68052277 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
68052203 TGATATGAGT
**
68052213 TGTGAATTATAAAAGGCTTCGGTCCAGTA-A
1 TGTGAATTATAAAAGGCTTCGACCCAGTATA
*
68052243 TGTGAATTATGAAGAGGCTTCGACCCAGTATA
1 TGTGAATTAT-AAAAGGCTTCGACCCAGTATA
68052275 TGT
1 TGT
68052278 TGAGATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 10 0.33
31 16 0.53
32 4 0.13
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (31 bp):
TGTGAATTATAAAAGGCTTCGACCCAGTATA
Found at i:68054118 original size:28 final size:28
Alignment explanation
Indices: 68054086--68054188 Score: 127
Period size: 28 Copynumber: 3.7 Consensus size: 28
68054076 ATTGCGTGGC
*
68054086 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
68054114 TATGAAAGTGATTGGG-CTCAATGGGCCA
1 TATGAATGTGATTGGGCCT-GATGGGCCA
* * *
68054142 TATGAATGTAATTGGGCCCGATGGGCTA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
68054170 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
68054189 AAAGAGGCCA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.03
28 59 0.95
29 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:68061618 original size:27 final size:27
Alignment explanation
Indices: 68061588--68061889 Score: 385
Period size: 27 Copynumber: 11.2 Consensus size: 27
68061578 AAAGTACTCC
68061588 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
68061615 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
68061642 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
68061669 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
68061696 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
68061723 -TAGTTTACAGAATTGCTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
68061750 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
68061777 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
68061804 TAATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
68061831 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
68061858 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
68061885 TGATT
1 CGATT
68061890 GTGAAATTAC
Statistics
Matches: 236, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.01
27 230 0.97
28 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:68061626 original size:54 final size:53
Alignment explanation
Indices: 68061557--68061899 Score: 352
Period size: 54 Copynumber: 6.4 Consensus size: 53
68061547 TATTGAAATG
* ***
68061557 CCCTCGACTTGTAAAATTACCAAAGTACTCC-CGATTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTTAAAATTACCATTTTAC-CCTCGATTTACAGAATTACCGTTTTA
*
68061611 CCCTCGATTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGA-TTTTAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
*
68061665 CCCTC-AGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTTA-A-AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * **
68061719 CCCT-TAGTTTACAGAATTGCTGTTTTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTTA-A-AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * ** * *
68061773 CCCTCAATTTGTAAAATTACCGTTTTACCCTTAATTTACAGAATTACTGGTTTA
1 CCCTCGATTT-TAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
68061827 CCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGA-TTT-TAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
* * *
68061881 CCCTTGATTGTGAAATTAC
1 CCCTCGATTTTAAAATTAC
68061900 TGAAATACCC
Statistics
Matches: 249, Mismatches: 32, Indels: 17
0.84 0.11 0.06
Matches are distributed among these distances:
52 4 0.02
53 11 0.04
54 227 0.91
55 5 0.02
56 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (53 bp):
CCCTCGATTTTAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:68061924 original size:27 final size:27
Alignment explanation
Indices: 68061894--68062068 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
68061884 TTGATTGTGA
*
68061894 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTATAAGGTAG
* *
68061921 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAAGGTAG
* *
68061948 AATTACTGAAATACCCTTAT-AGGATAG
1 AATTACCGAAATACCCCTATAAGG-TAG
* * *
68061975 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAAGGTAG
* * * *
68062002 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTATAAGGTAG
* * *
68062029 AAATACCGAAATACCCCTGT-AGGGAG
1 AATTACCGAAATACCCCTATAAGGTAG
*
68062055 AATTACCGAGATAC
1 AATTACCGAAATAC
68062069 GCTTGTGGGG
Statistics
Matches: 124, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
26 18 0.15
27 104 0.84
28 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAAGGTAG
Found at i:68061962 original size:54 final size:54
Alignment explanation
Indices: 68061894--68062060 Score: 232
Period size: 54 Copynumber: 3.1 Consensus size: 54
68061884 TTGATTGTGA
* * *
68061894 AATTACTGAAATACCCCTATAAGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
68061948 AATTACTGAAATACCCTTAT-AGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAAGG-TAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
68062002 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGG-AG
1 AATTACT-GAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
68062055 AATTAC
1 AATTAC
68062061 CGAGATACGC
Statistics
Matches: 101, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
53 11 0.11
54 88 0.87
55 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:68062001 original size:81 final size:80
Alignment explanation
Indices: 68061902--68062061 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 80
68061892 GAAATTACTG
* * *
68061902 AAATACCCCTATAAGGTAGAATT-TCCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTT
1 AAATACCCCTATAAGGTAGAATTAT-CGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCT
*
68061966 ATAGGATAGAATTACCA
65 ATAGG-GAGAATTACCA
* * * * *
68061983 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTATAAGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
68062048 TAGGGAGAATTACC
66 TAGGGAGAATTACC
68062062 GAGATACGCT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 9 0.13
81 59 0.86
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (80 bp):
AAATACCCCTATAAGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTA
TAGGGAGAATTACCA
Found at i:68062099 original size:53 final size:54
Alignment explanation
Indices: 68061894--68062084 Score: 224
Period size: 54 Copynumber: 3.6 Consensus size: 54
68061884 TTGATTGTGA
* * * * * * *
68061894 AATTACTGAAATACCCCTATAAGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * *
68061948 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
*
68062002 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGG-AG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * *
68062055 AATTACCGAGATACGCTTGTGGGGTA-AAAT
1 AATTACCGAAATACCCTTGTAGGGTAGAAAT
68062085 TACCATTTTG
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
52 4 0.03
53 24 0.20
54 93 0.77
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:68062323 original size:27 final size:26
Alignment explanation
Indices: 68062285--68062367 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
68062275 CGGAGGAAGC
*
68062285 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTAGTGGCTATGCCAC-AATATCT
*
68062312 GTTCTAGTGGCTCTGCCACAATATCT
1 GTTCTAGTGGCTATGCCACAATATCT
* * * * *
68062338 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTAGTGGCTATGCCACAATATCT
68062365 GTT
1 GTT
68062368 GACCGATCGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTAGTGGCTATGCCACAATATCT
Found at i:68062691 original size:25 final size:25
Alignment explanation
Indices: 68062653--68062748 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 25
68062643 TATGGCTTTG
* *
68062653 TGCCACATATTCTGTT-AGGTGGGTT
1 TGCCACATA-TCTGTTCAGGTGGCTC
*
68062678 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCAGGTGGCTC
* *
68062705 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCAGGTGGCTC
*
68062732 TGTCACGATATCTGTTC
1 TGCCAC-ATATCTGTTC
68062749 TGGCAGCCAT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
25 11 0.18
26 7 0.12
27 41 0.68
28 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (25 bp):
TGCCACATATCTGTTCAGGTGGCTC
Found at i:68062700 original size:27 final size:27
Alignment explanation
Indices: 68062678--68062751 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
68062668 TAGGTGGGTT
*
68062678 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
68062705 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
68062732 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
68062752 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:68062878 original size:6 final size:6
Alignment explanation
Indices: 68062869--68063087 Score: 198
Period size: 6 Copynumber: 36.3 Consensus size: 6
68062859 TTGCATTCAC
* * *
68062869 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ACTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
68062918 -TTCTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ACTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* *
68062965 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
68063014 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
68063062 ATTCTC ATTTTG GTTCTA ATTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG AT
68063088 AATGTTTCTT
Statistics
Matches: 170, Mismatches: 30, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
5 11 0.06
6 149 0.88
7 8 0.05
8 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:68065808 original size:47 final size:47
Alignment explanation
Indices: 68065686--68066084 Score: 681
Period size: 47 Copynumber: 8.4 Consensus size: 47
68065676 CAGCCAAGAC
68065686 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68065733 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68065782 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68065829 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68065878 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68065925 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68065972 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
68066019 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
68066066 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
68066085 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 243 0.72
49 94 0.28
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:68066258 original size:37 final size:37
Alignment explanation
Indices: 68066202--68066280 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
68066192 CCGAGCTCTA
* *
68066202 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
68066239 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68066276 AAGAC
1 AAGAC
68066281 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68068186 original size:43 final size:43
Alignment explanation
Indices: 68068138--68068240 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
68068128 TTGGTTTTCA
68068138 GCACTAAGTGTGCGGGCAATAACTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAACTGTTCACGGTTGTGAGATTG
*
68068181 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAACTGTTCACGGTTGTGAGATTG
68068224 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
68068241 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAACTGTTCACGGTTGTGAGATTG
Found at i:68068257 original size:29 final size:29
Alignment explanation
Indices: 68068222--68068295 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
68068212 GTTGTGAGAT
* *
68068222 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
68068251 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
68068280 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68068296 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:68068737 original size:77 final size:80
Alignment explanation
Indices: 68068642--68068796 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 80
68068632 TAAGTGACCA
* * *
68068642 TATCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTA-ATCCG-GCT-AGTCCCGAAGAGC
1 TATCCGGACTAAGATCCGAAGAGCATTCGTGCGAGTGA-TATATCCGTGCTAAATCCCGAAGAGC
*
68068703 ATTCATGCTAGTGATG
65 AATCATGCTAGTGATG
* * *
68068719 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCA
1 TATCCGGACTAAGATCCGAAGAGCATTCGTGCGAGTGATATATCCGTGCTAAATCCCGAAGAGCA
*
68068784 ATCATGCTGGTGA
66 ATCATGCTAGTGA
68068797 CGTGTATTCG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
77 21 0.32
78 18 0.27
79 3 0.05
80 24 0.36
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGACTAAGATCCGAAGAGCATTCGTGCGAGTGATATATCCGTGCTAAATCCCGAAGAGCA
ATCATGCTAGTGATG
Found at i:68068743 original size:40 final size:40
Alignment explanation
Indices: 68068604--68068796 Score: 166
Period size: 40 Copynumber: 4.9 Consensus size: 40
68068594 TCGAATGATG
** *
68068604 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * *
68068644 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
68068683 TCC-GGCT-AGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
68068721 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
68068761 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
68068797 CGTGTATTCG
Statistics
Matches: 126, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
36 1 0.01
37 9 0.07
38 19 0.15
39 8 0.06
40 82 0.65
41 7 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:68072365 original size:47 final size:47
Alignment explanation
Indices: 68072307--68072751 Score: 743
Period size: 47 Copynumber: 9.3 Consensus size: 47
68072297 CAGCCAAGAC
68072307 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68072354 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68072401 AGTGTATATTATGTGATAAGGCCTAATGGCCGATGTTATGTGAA-GTG-A
1 AGTGTATA-TATGTGATAAGGCCTAATGGCCGATGTGA--TGAATGTGAA
68072449 AGTGTAATATAT-TGATAATGATAGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGT-ATATATGTGATAA-G---GCCTAATGGCCGATGTGATGAATGTGAA
68072500 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68072547 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68072596 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68072643 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68072690 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68072737 AGTGTATATATGTGA
1 AGTGTATATATGTGA
68072752 AGGGCCGAGG
Statistics
Matches: 379, Mismatches: 6, Indels: 26
0.92 0.01 0.06
Matches are distributed among these distances:
47 242 0.64
48 38 0.10
49 56 0.15
50 14 0.04
51 29 0.08
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:68072488 original size:146 final size:142
Alignment explanation
Indices: 68072307--68072751 Score: 754
Period size: 146 Copynumber: 3.1 Consensus size: 142
68072297 CAGCCAAGAC
68072307 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
68072372 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAATGGCCGATGT
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAATGGCCGATGT
*
68072437 TATGTGAA-GTG-A
131 GA--TGAATGTGAA
68072449 AGTGTAATATAT-TGATAATGATAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 AGTGT-ATATATGTGATAA-G---GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
*
68072513 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGC
61 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-TATGTGATAAGGCCTAATGGC
68072578 CGATGTGATGAATGTGAA
125 CGATGTGATGAATGTGAA
* *
68072596 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
68072661 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-TATGTGATAAGGCCTAATGGCCGATGT
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAATGGCCGATGT
68072725 GATGAATGTGAA
131 GATGAATGTGAA
68072737 AGTGTATATATGTGA
1 AGTGTATATATGTGA
68072752 AGGGCCGAGG
Statistics
Matches: 289, Mismatches: 5, Indels: 19
0.92 0.02 0.06
Matches are distributed among these distances:
141 53 0.18
142 11 0.04
143 88 0.30
145 4 0.01
146 94 0.33
147 39 0.13
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (142 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAA
Found at i:68072966 original size:37 final size:37
Alignment explanation
Indices: 68072911--68072988 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
68072901 CCGAGCTCTA
* *
68072911 AAGA-CCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
68072947 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68072984 AAGAC
1 AAGAC
68072989 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 4 0.11
37 32 0.86
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68078900 original size:21 final size:21
Alignment explanation
Indices: 68078861--68078900 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
68078851 ACTTGTGTGA
*
68078861 AAATTTTGAGAATGTCTTGGT
1 AAATTTTGAGAATGCCTTGGT
68078882 AAATTTTGA-AATGGCCTTG
1 AAATTTTGAGAAT-GCCTTG
68078901 TATTATGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (21 bp):
AAATTTTGAGAATGCCTTGGT
Found at i:68080754 original size:39 final size:39
Alignment explanation
Indices: 68080700--68080884 Score: 273
Period size: 39 Copynumber: 4.7 Consensus size: 39
68080690 TCTGTGAGAT
*
68080700 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
68080739 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
68080778 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
68080817 TTGTATCCGAGG-TAAGTCCCGAAGGTATTCGTGCTGGAG
1 TTATATCCG-GGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
68080856 TTATATCCGGGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
68080885 TATGTTGGAA
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
38 2 0.02
39 127 0.97
40 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:68088809 original size:39 final size:39
Alignment explanation
Indices: 68088744--68089005 Score: 382
Period size: 39 Copynumber: 6.7 Consensus size: 39
68088734 GTGTGAGATC
* *
68088744 TATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTAGTGT
1 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
* * * *
68088783 TATGTCTGGGTTAAGTCTCGAAGGCATTCGTGCTGGTGT
1 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
*
68088822 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
*
68088861 TATGT-TCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
1 TATATCT-GGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
*
68088900 TATATCTGGGCTAAGTCCCGAAGGTATTCGTGCTAGTGT
1 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
* * * *
68088939 TATATCCGGGATAAGTCCCGAAGGTATTCGTGCTGGTGT
1 TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
*
68088978 TATATCCGGGCTAAGTCCCGAAGGCATT
1 TATATCTGGGCTAAGTCCCGAAGGCATT
68089006 TGTGTTGGAA
Statistics
Matches: 203, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.00
39 201 0.99
40 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (39 bp):
TATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGT
Found at i:68088888 original size:117 final size:117
Alignment explanation
Indices: 68088744--68089005 Score: 425
Period size: 117 Copynumber: 2.2 Consensus size: 117
68088734 GTGTGAGATC
* * * *
68088744 TATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTAGTGTTATGTCTGGGTTAAGTCTCGAAGGCA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCTGGGCTAAGTCCCGAAGGCA
* * *
68088809 TTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
66 TTCGTGCTAGTGTTATATCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
68088861 TATGTTCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCTGGGCTAAGTCCCGAAGGTA
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCTGGGCTAAGTCCCGAAGGCA
*
68088926 TTCGTGCTAGTGTTATATCCGGGATAAGTCCCGAAGGTATTCGTGCTGGTGT
66 TTCGTGCTAGTGTTATATCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTGT
68088978 TATATCCGGGCTAAGTCCCGAAGGCATT
1 TATATCCGGGCTAAGTCCCGAAGGCATT
68089006 TGTGTTGGAA
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
117 132 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (117 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCTGGGCTAAGTCCCGAAGGCA
TTCGTGCTAGTGTTATATCCGGGATAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:68091026 original size:42 final size:42
Alignment explanation
Indices: 68090964--68091047 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
68090954 GCTTCGACAA
*
68090964 CTATCCTCACAATTTGTCTCATTTCTATCTAGTTATTGCACT
1 CTATCCTCACAATTTATCTCATTTCTATCTAGTTATTGCACT
68091006 CTATCCTCACAATTTATCTCATTTCTATCTAGTTATTGCACT
1 CTATCCTCACAATTTATCTCATTTCTATCTAGTTATTGCACT
68091048 GACATTAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.26, G:0.06, T:0.45
Consensus pattern (42 bp):
CTATCCTCACAATTTATCTCATTTCTATCTAGTTATTGCACT
Found at i:68094694 original size:40 final size:40
Alignment explanation
Indices: 68094639--68094836 Score: 315
Period size: 40 Copynumber: 5.0 Consensus size: 40
68094629 GAAAAAAAAA
*
68094639 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
68094679 TATAACCGAGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
68094719 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGTGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
68094759 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
** * *
68094799 TATAACCGGGTTAAGTCTTGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
68094837 GTTACATCTG
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:68094860 original size:80 final size:80
Alignment explanation
Indices: 68094639--68094862 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 80
68094629 GAAAAAAAAA
* * * * * ** *
68094639 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTATTATAACCGAGTTAAGTCCCGAAGGC
1 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGTGTTATTACAACCGAGCCAAATCCCGAAGGC
68094704 ATTCGTGCGGGTTAT
66 ATTCGTGCGGGTTAT
* * ** *
68094719 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGTGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGTGTTATTACAACCGAGCCAAATCCCGAAGGC
68094784 ATTCGTGCGGGTTAT
66 ATTCGTGCGGGTTAT
* *** * * * * *
68094799 TATAACCGGGTTAAGTCTTGAAGGCATTTGTGC-TGGTTGTTACATCTGAGCCAAATTCCGAAGG
1 TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGT-GTTATTACAACCGAGCCAAATCCCGAAGG
68094863 TATTTATGTT
Statistics
Matches: 124, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
79 1 0.01
80 123 0.99
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (80 bp):
TATAACCAGGTTAAGTCCCAAAGGCATTCGTGCGTGTTATTACAACCGAGCCAAATCCCGAAGGC
ATTCGTGCGGGTTAT
Found at i:68102897 original size:40 final size:40
Alignment explanation
Indices: 68102842--68103159 Score: 564
Period size: 40 Copynumber: 8.0 Consensus size: 40
68102832 AAAAAAAATA
*
68102842 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
68102882 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
68102922 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
68102962 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
68103002 TATAACCGAGTTAAGTCCCGAAGGCATTCGTGCAGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
*
68103042 TATAACCGGGTTGAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
68103082 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
* *
68103122 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
68103160 GTTACATCCG
Statistics
Matches: 266, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 266 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
Found at i:68110683 original size:19 final size:19
Alignment explanation
Indices: 68110659--68110696 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
68110649 AGATATATGT
68110659 GGCGAGGCCACTAGATTGC
1 GGCGAGGCCACTAGATTGC
68110678 GGCGAGGCCACTAGATTGC
1 GGCGAGGCCACTAGATTGC
68110697 AGCAAGGCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.37, T:0.16
Consensus pattern (19 bp):
GGCGAGGCCACTAGATTGC
Found at i:68110704 original size:19 final size:19
Alignment explanation
Indices: 68110663--68110704 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
68110653 ATATGTGGCG
* *
68110663 AGGCCACTAGATTGCGGCG
1 AGGCCACTAGATTGCAGCA
68110682 AGGCCACTAGATTGCAGCA
1 AGGCCACTAGATTGCAGCA
68110701 AGGC
1 AGGC
68110705 TGCCAGAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.33, T:0.14
Consensus pattern (19 bp):
AGGCCACTAGATTGCAGCA
Found at i:68114333 original size:46 final size:48
Alignment explanation
Indices: 68114229--68114348 Score: 145
Period size: 48 Copynumber: 2.5 Consensus size: 48
68114219 TGTCTTCGAC
** * *
68114229 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * * *
68114277 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
68114323 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
68114349 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 27 0.44
47 1 0.02
48 34 0.55
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:68116934 original size:26 final size:27
Alignment explanation
Indices: 68116905--68117026 Score: 99
Period size: 26 Copynumber: 4.6 Consensus size: 27
68116895 TTAGTTTACC
68116905 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACTGAAATACCCCCAGATTGTA
* ** * *
68116931 AAATTAC-CAAAGTACCCCTGGTTTATA
1 AAATTACTGAAA-TACCCCCAGATTGTA
** **
68116958 AAATTACCAAAATACCATC-GATTGTA
1 AAATTACTGAAATACCCCCAGATTGTA
**
68116984 AAATTACTGAAATACCATC-GATTTGTA
1 AAATTACTGAAATACCCCCAGA-TTGTA
68117011 AAATTACTGAAATACC
1 AAATTACTGAAATACC
68117027 TTTGTAGGGT
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.04
26 38 0.47
27 36 0.45
28 3 0.04
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCCCAGATTGTA
Found at i:68117017 original size:27 final size:26
Alignment explanation
Indices: 68116905--68117026 Score: 113
Period size: 27 Copynumber: 4.6 Consensus size: 26
68116895 TTAGTTTACC
* *
68116905 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCCCGATTTGTA
* * *
68116931 AAATTAC-CAAAGTACCCCTGGTTTATA
1 AAATTACTGAAA-TACCCC-GATTTGTA
** *
68116958 AAATTACCAAAATACCATCGA-TTGTA
1 AAATTACTGAAATACC-CCGATTTGTA
*
68116984 AAATTACTGAAATACCATCGATTTGTA
1 AAATTACTGAAATACC-CCGATTTGTA
68117011 AAATTACTGAAATACC
1 AAATTACTGAAATACC
68117027 TTTGTAGGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.04
26 36 0.45
27 37 0.46
28 4 0.05
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATTACTGAAATACCCCGATTTGTA
Found at i:68117042 original size:27 final size:27
Alignment explanation
Indices: 68117012--68117199 Score: 265
Period size: 27 Copynumber: 7.0 Consensus size: 27
68117002 CGATTTGTAA
*
68117012 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
68117039 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
68117066 AAATACCGAAATACCCCTT-TAGGGTAG
1 AATTACTGAAATA-CCCTTGTAGGGTAG
68117093 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* *
68117120 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
68117147 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
68117174 AATTAC-CAAGATACCCTTATAGGGTA
1 AATTACTGAA-ATACCCTTGTAGGGTA
68117200 AAATACCATT
Statistics
Matches: 145, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
26 7 0.05
27 132 0.91
28 6 0.04
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:68117570 original size:26 final size:27
Alignment explanation
Indices: 68117541--68117600 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
68117531 CCACATATAT
*
68117541 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
68117567 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
68117594 ATATCTG
1 ATATCTG
68117601 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:68117730 original size:6 final size:6
Alignment explanation
Indices: 68117719--68117819 Score: 57
Period size: 6 Copynumber: 16.3 Consensus size: 6
68117709 TTGCTTTCAC
* * *
68117719 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
68117769 ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
68117818 AT
1 AT
68117820 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
5 5 0.07
6 55 0.76
7 9 0.12
8 3 0.04
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:68117750 original size:19 final size:19
Alignment explanation
Indices: 68117722--68117793 Score: 60
Period size: 19 Copynumber: 3.8 Consensus size: 19
68117712 CTTTCACATT
*
68117722 CTGATTCTGATTCTGTTAC
1 CTGATACTGATTCTGTTAC
68117741 CTGATACTGATTCTGATT--
1 CTGATACTGATTCTG-TTAC
* *
68117759 CTG-TCACCTAATTCTGTCAC
1 CTGAT-A-CTGATTCTGTTAC
*
68117779 CTGATTCTGATTCTG
1 CTGATACTGATTCTG
68117794 ATTCTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
17 1 0.02
18 5 0.12
19 30 0.71
20 5 0.12
21 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.43
Consensus pattern (19 bp):
CTGATACTGATTCTGTTAC
Found at i:68117774 original size:13 final size:13
Alignment explanation
Indices: 68117756--68117787 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
68117746 ACTGATTCTG
68117756 ATTCTGTCACCTA
1 ATTCTGTCACCTA
*
68117769 ATTCTGTCACCTG
1 ATTCTGTCACCTA
68117782 ATTCTG
1 ATTCTG
68117788 ATTCTGATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.28, G:0.12, T:0.41
Consensus pattern (13 bp):
ATTCTGTCACCTA
Found at i:68120517 original size:14 final size:13
Alignment explanation
Indices: 68120494--68120526 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
68120484 AATTTTCCTT
68120494 TTTC-TTTTCTCTC
1 TTTCTTTTTCTC-C
68120507 TTTCTTTTTCTCC
1 TTTCTTTTTCTCC
68120520 TTTCTTT
1 TTTCTTT
68120527 CCCCTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTCTTTTTCTCC
Found at i:68120749 original size:8 final size:8
Alignment explanation
Indices: 68120736--68120766 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
68120726 TTTAATTAAT
68120736 ATAATATA
1 ATAATATA
68120744 ATAATATA
1 ATAATATA
*
68120752 ATAATAAA
1 ATAATATA
68120760 ATAATAT
1 ATAATAT
68120767 TTACATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
ATAATATA
Found at i:68126411 original size:20 final size:20
Alignment explanation
Indices: 68126364--68126412 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
68126354 ATTTTGTCCA
68126364 AATTA-GTTAAGTTGTTATTT
1 AATTATGTT-AGTTGTTATTT
* *
68126384 AAGT-TGTTAGTTGTTGTTT
1 AATTATGTTAGTTGTTATTT
68126403 AATTATGTTA
1 AATTATGTTA
68126413 AAATGTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (20 bp):
AATTATGTTAGTTGTTATTT
Found at i:68129922 original size:42 final size:41
Alignment explanation
Indices: 68129876--68129959 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 41
68129866 GAGACTGGAA
68129876 AAAGAAAG-TGAAAATGAAAAAGAAGA-AAATGCGAGAGAAAAG
1 AAAGAAAGTTG-AAAT-AAAAAGAAGACAAA-GCGAGAGAAAAG
* *
68129918 AAAGAAAGTTGTAATAAAAATAAGATCAAAGCGAGAGAAAAG
1 AAAGAAAGTTGAAATAAAAAGAAGA-CAAAGCGAGAGAAAAG
68129960 GAAAATCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
41 9 0.24
42 23 0.62
43 5 0.14
ACGTcount: A:0.62, C:0.04, G:0.24, T:0.11
Consensus pattern (41 bp):
AAAGAAAGTTGAAATAAAAAGAAGACAAAGCGAGAGAAAAG
Found at i:68131201 original size:20 final size:20
Alignment explanation
Indices: 68131154--68131202 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
68131144 ACTTTGTCCA
*
68131154 AATTA-GTTAAGTTGTTATTT
1 AATTATGTT-AGTTGCTATTT
*
68131174 AAGT-TGTTAGTTGCTATTT
1 AATTATGTTAGTTGCTATTT
68131193 AATTATGTTA
1 AATTATGTTA
68131203 AAATGTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.53
Consensus pattern (20 bp):
AATTATGTTAGTTGCTATTT
Found at i:68134254 original size:21 final size:22
Alignment explanation
Indices: 68134219--68134259 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68134209 GAATTTAGTT
68134219 GTTGAGGGGATTGTGGTGGACG
1 GTTGAGGGGATTGTGGTGGACG
* *
68134241 GTTGGGGGGA-TGTGTTGGA
1 GTTGAGGGGATTGTGGTGGA
68134260 GTGATTTGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.12, C:0.02, G:0.56, T:0.29
Consensus pattern (22 bp):
GTTGAGGGGATTGTGGTGGACG
Found at i:68135221 original size:16 final size:16
Alignment explanation
Indices: 68135202--68135234 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68135192 TTCGATTACA
68135202 TAATTTATTCATTAAT
1 TAATTTATTCATTAAT
68135218 TAATTTATTCATTAAT
1 TAATTTATTCATTAAT
68135234 T
1 T
68135235 CCATCCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTTATTCATTAAT
Found at i:68136111 original size:29 final size:27
Alignment explanation
Indices: 68136093--68136162 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
68136083 ATATTAAGTC
68136093 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
68136120 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
68136148 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
68136163 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:68136156 original size:28 final size:28
Alignment explanation
Indices: 68136093--68136190 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
68136083 ATATTAAGTC
*
68136093 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
68136120 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68136148 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68136177 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68136191 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68144844 original size:24 final size:25
Alignment explanation
Indices: 68144813--68144859 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
68144803 TTATAACATG
* *
68144813 AAAATGACCGTT-TGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68144837 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68144860 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68144943 original size:11 final size:11
Alignment explanation
Indices: 68144907--68144962 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
68144897 CATGGTATGT
68144907 ATGATATGCAC
1 ATGATATGCAC
* *
68144918 ATGACATG--T
1 ATGATATGCAC
68144927 ATGATATGCAC
1 ATGATATGCAC
*
68144938 ATGATATG--T
1 ATGATATGCAC
68144947 ATGATATGCAC
1 ATGATATGCAC
68144958 ATGAT
1 ATGAT
68144963 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68144962 original size:20 final size:20
Alignment explanation
Indices: 68144896--68144962 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
68144886 ATTTTGATAA
*
68144896 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
68144916 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
68144936 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68144956 ACATGAT
1 ACATGAT
68144963 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68145068 original size:24 final size:23
Alignment explanation
Indices: 68145012--68145200 Score: 202
Period size: 23 Copynumber: 8.0 Consensus size: 23
68145002 CAGGAAGTGA
68145012 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
68145035 TAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
68145058 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
68145082 TAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
68145105 CAAAAGGGCTTACGTCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
68145129 TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* * *
68145152 AAAAAGGGTTTTTG-CCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
68145176 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68145200 A
1 A
68145201 TGATAAAGCA
Statistics
Matches: 138, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
23 76 0.55
24 56 0.41
25 6 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:68145081 original size:47 final size:47
Alignment explanation
Indices: 68145012--68145178 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
68145002 CAGGAAGTGA
68145012 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATC
68145059 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATC
* * * * *
68145106 AAAAGGGCTTACGTCCCAGTTATTAAAGGGCTTATGCCCTAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATC
* * *
68145153 AAAAGGGTTTTTG-CCTAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
68145179 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 12 0.11
47 99 0.89
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATC
Found at i:68152212 original size:47 final size:44
Alignment explanation
Indices: 68152142--68152405 Score: 169
Period size: 47 Copynumber: 5.7 Consensus size: 44
68152132 AGTGTGAGCT
* *
68152142 AGTGTAAGACATGCCTGGGACAT-GCATCAGCCACATTATGAGGGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCACA-TATGA-AGCC
* * * * * *
68152188 AGTGTAAGACCATGTCTGGGACATGGTATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGCCA--CATATGA-AGCC
* * *
68152236 AGTGTAAGACTTGTCTGGGACAT-GCATCGGCCTCGAGACAT-AAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-G-C-C-ACATATGAAGCC
* * **
68152282 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTT
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCAC-ATATGA-AGCC
* *
68152328 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATG-AGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG-C--CACATATGAAGCC
68152375 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG
68152406 GCAGCTTACC
Statistics
Matches: 177, Mismatches: 25, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 56 0.32
47 79 0.45
48 28 0.16
49 6 0.03
50 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGCCACATATGAAGCC
Found at i:68152289 original size:46 final size:48
Alignment explanation
Indices: 68152185--68152407 Score: 246
Period size: 47 Copynumber: 4.8 Consensus size: 48
68152175 CATTATGAGG
* * * *
68152185 GCCAGTGTAAGACCATGTCTGGGACATGGTATCGACATTGAGACGA-GA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAC-ATGA
* * *
68152233 GCTAGTGTAAGA-CTTGTCTGGGACAT-GCATCGGCCTCGAGACATAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACATGA
*
68152279 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATGAT-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGA-CATGA
** * * *
68152325 GTTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACATGA
68152372 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
68152408 AGCTTACCCA
Statistics
Matches: 150, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
45 3 0.02
46 62 0.41
47 66 0.44
48 19 0.13
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACATGA
Found at i:68152394 original size:140 final size:141
Alignment explanation
Indices: 68152142--68152407 Score: 369
Period size: 140 Copynumber: 1.9 Consensus size: 141
68152132 AGTGTGAGCT
* *
68152142 AGTGTAAGACATGCCTGGGACATGCATCAGCCACATTATGAGGGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGCCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
68152207 GACATGGTATCGACATTGAGACGAGAGCTAGTGTAAGACTTGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
68152271 AGACATAAGCC
131 AGACATAAGCC
* * * * **
68152282 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTTAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGCCTGGGACATGCATCAGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCTG
*
68152346 GGACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 GGACATGGCATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
68152408 AGCTTACCCA
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.17
140 81 0.74
141 9 0.08
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGCCTGGGACATGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGACATAAGCC
Found at i:68156804 original size:40 final size:40
Alignment explanation
Indices: 68156760--68156860 Score: 184
Period size: 40 Copynumber: 2.5 Consensus size: 40
68156750 TTGGCTCGGA
* *
68156760 TATAACAACCAGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
68156800 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
68156840 TATAATAACCCGCACGAATGC
1 TATAATAACCCGCACGAATGC
68156861 TATGCACATA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCGGGACTTAACCCGGT
Found at i:68160844 original size:33 final size:33
Alignment explanation
Indices: 68160807--68160879 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
68160797 TCTGGGCTAG
*
68160807 AGCCCTAT-TCAGTATTAGTACAGTCTGGGCCTT
1 AGCCCTATAT-AGTATCAGTACAGTCTGGGCCTT
*
68160840 AGCCCTATATAGTATCAGTGCAGTCTGGGCCTT
1 AGCCCTATATAGTATCAGTACAGTCTGGGCCTT
68160873 AGCCCTA
1 AGCCCTA
68160880 CACAGTAGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 36 0.97
34 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (33 bp):
AGCCCTATATAGTATCAGTACAGTCTGGGCCTT
Found at i:68163330 original size:93 final size:93
Alignment explanation
Indices: 68163198--68163369 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
68163188 GCCCATAAGT
* *
68163198 GAACTCGGACTCAACTCAATGAGCTAGGGCATTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
68163263 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* * ** *
68163291 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
68163356 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
68163370 CAAAACATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:68163360 original size:46 final size:46
Alignment explanation
Indices: 68163190--68163365 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
68163180 TGTAACCCGC
* * * * *
68163190 CCATAAGTGAACTCGGACTCAACTCAATGAGCTAGGGCATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* *
68163236 CCATAAGTGAACTCAGACTCAACTCAACGAGCTT-GGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA---C-ATTTACAT
* *
68163286 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
68163329 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68163366 TGCCCAAAAC
Statistics
Matches: 108, Mismatches: 11, Indels: 22
0.77 0.08 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 62 0.57
47 26 0.24
49 1 0.01
50 8 0.07
51 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:68165320 original size:15 final size:16
Alignment explanation
Indices: 68165294--68165356 Score: 78
Period size: 15 Copynumber: 4.1 Consensus size: 16
68165284 CAAGGAAACC
68165294 GAATAAAGAAATCCAA
1 GAATAAAGAAATCCAA
*
68165310 G-ATAGAGAAATCC-A
1 GAATAAAGAAATCCAA
*
68165324 GAATAAAGAAA-CCCA
1 GAATAAAGAAATCCAA
*
68165339 GAATAAAGAAACCCAA
1 GAATAAAGAAATCCAA
68165355 GA
1 GA
68165357 TACGATACTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
14 4 0.10
15 31 0.76
16 6 0.15
ACGTcount: A:0.59, C:0.16, G:0.16, T:0.10
Consensus pattern (16 bp):
GAATAAAGAAATCCAA
Found at i:68168370 original size:46 final size:45
Alignment explanation
Indices: 68168303--68168469 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 45
68168293 GCCCATAAGC
* *
68168303 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATGAGT
* * *
68168349 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATGAGT
* * *
68168396 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATGAGT
* *
68168442 GAACTCGGACTCAACTAAATGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
68168470 ATGCTCAACC
Statistics
Matches: 99, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 51 0.52
47 27 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATGAGT
Found at i:68168466 original size:93 final size:93
Alignment explanation
Indices: 68168302--68168473 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
68168292 CGCCCATAAG
* * * *
68168302 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATGAGTGAACTCGGACTCAACTAA
68168367 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
68168395 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATGAGTGAACTCGGACTCAACTAA
1 CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATGAGTGAACTCGGACTCAACTAA
*
68168460 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
68168474 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATGAGTGAACTCGGACTCAACTAA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:68169890 original size:41 final size:42
Alignment explanation
Indices: 68169839--68169930 Score: 141
Period size: 41 Copynumber: 2.1 Consensus size: 42
68169829 AACTCGTTGA
*
68169839 GAGTCCGAGATGTAACTAGGCATCCGA-GTTGAGTTGAGTCC
1 GAGTTCGAGATGTAACTAGGCATCCGACGTTGAGTTGAGTCC
68169880 GAGTTCGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCC
1 GAGTTCGAGATGTAACTAGGCATCCGA---CGTTGAGTTGAGTCC
68169925 GAGTTC
1 GAGTTC
68169931 ACTTATGGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
41 26 0.57
45 20 0.43
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (42 bp):
GAGTTCGAGATGTAACTAGGCATCCGACGTTGAGTTGAGTCC
Found at i:68173873 original size:45 final size:45
Alignment explanation
Indices: 68173809--68173979 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 45
68173799 AACCCGCCCC
*
68173809 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGGTT-GCATCCA
*
68173854 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G----GTTGCATCCA
* * **
68173902 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGGTTGCATCCA
68173946 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68173980 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 2 0.02
45 61 0.56
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGGTTGCATCCA
Found at i:68173925 original size:92 final size:92
Alignment explanation
Indices: 68173814--68173982 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
68173804 GCCCCTAAGT
**
68173814 GAACTCGGACTCAACTCAACGAGCTCGG-GGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
68173878 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
*
68173906 GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAAC
68173971 GAGTTCGGATGC
66 GAGTTCGGATGC
68173983 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 71 0.97
93 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:68175627 original size:14 final size:14
Alignment explanation
Indices: 68175548--68175627 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
68175538 GTATCTTGGG
*
68175548 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
68175563 TCTCTTTGTTCTGGA
1 TTTCTTTATTC-GGA
*
68175578 TTTCTTTATTCCGGG
1 TTTCTTTATT-CGGA
* *
68175593 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
68175608 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
68175622 TTTCTT
1 TTTCTT
68175628 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
14 9 0.18
15 40 0.78
16 2 0.04
ACGTcount: A:0.09, C:0.19, G:0.15, T:0.57
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:68178064 original size:46 final size:46
Alignment explanation
Indices: 68178011--68178183 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
68178001 TTGGGCATCT
*
68178011 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
*** * * * *
68178057 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCGTCC
* * * *
68178104 GAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
* * *
68178150 GAGCTCGTTGAGTTGAGTCTGAGATCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68178184 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 66 0.65
47 36 0.35
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
Found at i:68189286 original size:26 final size:26
Alignment explanation
Indices: 68189235--68189289 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
68189225 ATCTAATTAC
68189235 AATGCACTTGTAATACACAAAATAAT
1 AATGCACTTGTAATACACAAAATAAT
*
68189261 AATGCACTTGTAATACACGAAATAAT
1 AATGCACTTGTAATACACAAAATAAT
68189287 AAT
1 AAT
68189290 ATTTTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (26 bp):
AATGCACTTGTAATACACAAAATAAT
Found at i:68189315 original size:9 final size:10
Alignment explanation
Indices: 68189292--68189317 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
68189282 ATAATAATAT
68189292 TTTTTTGAAC
1 TTTTTTGAAC
68189302 TTTTTTGAAC
1 TTTTTTGAAC
68189312 TTTTTT
1 TTTTTT
68189318 TACAAACCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (10 bp):
TTTTTTGAAC
Found at i:68201286 original size:28 final size:28
Alignment explanation
Indices: 68201246--68201324 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
68201236 GCAATCAAAT
* *
68201246 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
68201274 ATGGCACTTAGTGTGCGAGATATTGATA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
68201302 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
68201325 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Done.