Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 21 of 290
Found at i:6984714 original size:11 final size:11
Alignment explanation
Indices: 6984698--6984722 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6984688 TTAAAATGAT
6984698 TAAAAATAAAA
1 TAAAAATAAAA
6984709 TAAAAATAAAA
1 TAAAAATAAAA
6984720 TAA
1 TAA
6984723 TATATAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:6984930 original size:3 final size:3
Alignment explanation
Indices: 6984916--6985271 Score: 85
Period size: 3 Copynumber: 117.3 Consensus size: 3
6984906 AATAGTGTTT
* * * *
6984916 TTA TTA TT- TTA TTA TTT TTA CCTTT TTA TTA CTA TTA TTA TTAA CCTA
1 TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TT-A -TTA
* * * * * * *
6984964 CTA TTA TTA TTT TTA TAA ATA -TA GTA TTA TT- TTT TTA TATA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
** * * * *
6985008 TTA TTA TTA TTA GCA CGTA -TA TTA TTA TTA TTAA TGTG TCA TTG TTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA
* *
6985055 TT- TT- TTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT- TCTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA
** *
6985097 TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCG TTA TTT TCTA TTA
1 TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA T-TA TTA
* * *
6985143 TCA TTA ATA TGTCG TT- TGT- TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA T-T-A TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * * * * *
6985189 TTA ACA CTA TTA TCA TCA TTA -TA TT- TAA TTT TTT TTAA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA
** * * *
6985233 TTA CCA CTA -TA TTA TTA TTA TTA CTA TTA TTT TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
6985272 CCGTCCTATT
Statistics
Matches: 261, Mismatches: 60, Indels: 64
0.68 0.16 0.17
Matches are distributed among these distances:
2 26 0.10
3 205 0.79
4 22 0.08
5 7 0.03
6 1 0.00
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:6985005 original size:20 final size:21
Alignment explanation
Indices: 6984967--6985015 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
6984957 TAACCTACTA
6984967 TTATTATTTTTATAAATATAG
1 TTATTATTTTTATAAATATAG
* * *
6984988 -TATTATTTTTTTATATATTG
1 TTATTATTTTTATAAATATAG
6985008 TTATTATT
1 TTATTATT
6985016 ATTAGCACGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TTATTATTTTTATAAATATAG
Found at i:6985596 original size:125 final size:128
Alignment explanation
Indices: 6985432--6985694 Score: 338
Period size: 125 Copynumber: 2.1 Consensus size: 128
6985422 ATTTTTCAAG
* * *
6985432 TAAAGGCAATATTCGGTAATTGAAAATTCGAGAAATCGTGTCCTAACGTACTGGGTTTC-AGTTT
1 TAAAGGCAATATCCCGTAATTGAAAATTCGAGAAATCGTGCCCTAACGTACTGGGTTTCGAGTTT
* * **
6985496 TTCTTTTGATCTAAGTAACCGGTTATCC-TTTT-AAATTAAAATACATGAGTTTTAAATAAAA
66 TTCATTTGATCTAAATAACCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
* * * *
6985557 TAAAGGCAATATCCCGT-ATTTAGAAATTCGA-ATAGTCGTGCCCTAACGTATTGGGTTTCGATT
1 TAAAGGCAATATCCCGTAATTGA-AAATTCGAGA-AATCGTGCCCTAACGTACTGGGTTTCGAGT
* * *
6985620 TTTTCATTTGATCTAAATATCCGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATGAAA
64 TTTTCATTTGATCTAAATAACCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
6985685 TAGAAGGCAA
1 TA-AAGGCAA
6985695 GCTCATACTC
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
124 5 0.04
125 46 0.39
126 27 0.23
127 4 0.03
128 29 0.25
129 7 0.06
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (128 bp):
TAAAGGCAATATCCCGTAATTGAAAATTCGAGAAATCGTGCCCTAACGTACTGGGTTTCGAGTTT
TTCATTTGATCTAAATAACCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
Found at i:6988989 original size:9 final size:9
Alignment explanation
Indices: 6988977--6989009 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
6988967 TAGATTTGAT
*
6988977 TCGATTAAT
1 TCGATTAAC
6988986 TCGATTAAC
1 TCGATTAAC
6988995 TCGATTAAC
1 TCGATTAAC
6989004 TCGATT
1 TCGATT
6989010 CGAATAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (9 bp):
TCGATTAAC
Found at i:6991795 original size:6 final size:7
Alignment explanation
Indices: 6991777--6991803 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
6991767 TGTTTTGTTT
6991777 CAAAAAG
1 CAAAAAG
6991784 CAAAAAG
1 CAAAAAG
6991791 CAAAAAG
1 CAAAAAG
6991798 CAAAAA
1 CAAAAA
6991804 CATTCTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.15, G:0.11, T:0.00
Consensus pattern (7 bp):
CAAAAAG
Found at i:6994846 original size:52 final size:53
Alignment explanation
Indices: 6994697--6994849 Score: 163
Period size: 52 Copynumber: 2.9 Consensus size: 53
6994687 CATATCATAT
* *
6994697 CGATGCCATATCCC-AGATATGGTCTTATACGGAATCACATTATCACAACACAC
1 CGATGCCATAGCCCGAGATATGGTCTTATACGGAATCACA-TATCACATCACAC
* * ***
6994750 CGATGCCATAG--CGTAGCTATGGTCTTATACGGAAACACGA-ATCACATTGTAC
1 CGATGCCATAGCCCG-AGATATGGTCTTATACGGAATCAC-ATATCACATCACAC
* *
6994802 CTATGCCATAGCCCGA-ATATGGTCTTATACGGAATCATATATCACATC
1 CGATGCCATAGCCCGAGATATGGTCTTATACGGAATCACATATCACATC
6994850 TTTTCCGTCA
Statistics
Matches: 82, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
51 2 0.02
52 44 0.54
53 33 0.40
54 3 0.04
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (53 bp):
CGATGCCATAGCCCGAGATATGGTCTTATACGGAATCACATATCACATCACAC
Found at i:6999936 original size:13 final size:13
Alignment explanation
Indices: 6999918--6999942 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6999908 AAATCGAGTC
6999918 ATAAATAATTATT
1 ATAAATAATTATT
6999931 ATAAATAATTAT
1 ATAAATAATTAT
6999943 GAGTTTAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAATAATTATT
Found at i:7000364 original size:38 final size:38
Alignment explanation
Indices: 7000322--7000397 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
7000312 ATGTGTGGAA
*
7000322 TTGAATTGAATAT-TGACTTGAAAATGGAAAAGTG-AATT
1 TTGAATTGAAT-TGTGA-TTGAAAATGAAAAAGTGCAATT
*
7000360 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGCAATT
1 TTGAATTGAATTGTGATTGAAAATGAAAAAGTGCAATT
7000398 GAATTGGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 16 0.47
38 18 0.53
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (38 bp):
TTGAATTGAATTGTGATTGAAAATGAAAAAGTGCAATT
Found at i:7000411 original size:36 final size:35
Alignment explanation
Indices: 7000319--7000411 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 35
7000309 TATATGTGTG
* *
7000319 GAATTGAATTGAATATTGACTTGAAAATGGAAAAGT
1 GAATTGAATTGAAT-GTGACTTGAAAATGAAAAAGT
*
7000355 GAATTTTGAATTGAATTGTGA-TTGAAAGTGAAAAAGT
1 GAA--TTGAATTGAA-TGTGACTTGAAAATGAAAAAGT
7000392 GCAATTGAATTGGAATGTGA
1 G-AATTGAATT-GAATGTGA
7000412 ATTTGGAGAC
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
36 15 0.31
37 18 0.37
38 15 0.31
39 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.25, T:0.32
Consensus pattern (35 bp):
GAATTGAATTGAATGTGACTTGAAAATGAAAAAGT
Found at i:7002538 original size:23 final size:23
Alignment explanation
Indices: 7002511--7002557 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7002501 AAAATACATG
7002511 TGTAAAAA-TATTATACATATACT
1 TGTAAAAATTA-TATACATATACT
* *
7002534 TGTAATAATTATATACATTTACT
1 TGTAAAAATTATATACATATACT
7002557 T
1 T
7002558 ATTATTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.45
Consensus pattern (23 bp):
TGTAAAAATTATATACATATACT
Found at i:7003455 original size:30 final size:28
Alignment explanation
Indices: 7003401--7003461 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
7003391 TAAAAATGTA
7003401 AAATATATATTTAAATTTGTAAATTTGT
1 AAATATATATTTAAATTTGTAAATTTGT
*
7003429 AAATATATATTATGGAATTATG-AAATTTGT
1 AAATATATATT-T-AAATT-TGTAAATTTGT
7003459 AAA
1 AAA
7003462 GAAAATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 11 0.38
29 1 0.03
30 15 0.52
31 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (28 bp):
AAATATATATTTAAATTTGTAAATTTGT
Found at i:7003561 original size:20 final size:20
Alignment explanation
Indices: 7003533--7003583 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
7003523 GACAAAAAGT
*
7003533 ATATATGTGAAAAACGTGTG
1 ATATTTGTGAAAAACGTGTG
7003553 ATATTTGTGAAAAACGTGTG
1 ATATTTGTGAAAAACGTGTG
7003573 ATATTTGTGAA
1 ATATTTGTGAA
7003584 TTGTGAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (20 bp):
ATATTTGTGAAAAACGTGTG
Found at i:7015756 original size:265 final size:261
Alignment explanation
Indices: 7015147--7017250 Score: 1686
Period size: 265 Copynumber: 8.0 Consensus size: 261
7015137 ACTAAACACA
* * * * ** **
7015147 GCTAACCGATAACTAAAGCCCCTTAAAAGGCCCCATTGACACCATTCAGGAAGAAGTCAAACACG
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * * * *
7015212 AGCACCTAGTCTATCAAGTTAATTCTTCCATCGCTCAAACCAGTCAATCTCACCGATGTTATCC-
65 AGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCCT
* * *
7015276 ATAT-GGCTACTAGTTACATATGCAGAGTCAACACAGTATTTCAC----A---AGCAAAGAAACA
130 ACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAACA
* * *
7015333 GAGGAAACACAATTAATAGTTTACTAAACTCACCAAGA-GATTTAACTCCCCTCCATTGACACAC
195 GAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCATTGACACAC
*
7015397 GAC
259 AAC
*
7015400 GCTAACCGATAACTAAAACCCCTTAAAAGGCTCCATTGACACCG-TCGAACAAGAAGTCAAATTC
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTC-AACAAGAAGTCAAATTC
* * * * *
7015464 AAGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATCC
64 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCC
* *
7015529 TACATGGGCTACAACTTAAATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAAC
129 TACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAAC
* * *
7015594 AAAGGAAACACGATTACTAGTTCACAGAACTCACCAAGAGGATTGAACTCTCCTCCAATTGACAC
194 AGAGGAAACACAATTACTAGTTCACA-AACTCACCAAGAGGATTGAACTCCCCTCC-ATTGACAC
*
7015659 ACAAT
257 ACAAC
* * * * * *
7015664 GCTAACTGATATCAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTCAACAATAAGTCAAATTT
1 GCTAACCGATAT-TAAAA-CCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTC
* * * * *
7015729 GAGCATCC-AGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAATCTCATCAAAG-CATC
64 GAGCA-CCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATC
* ** * * * * **
7015792 CTATATAAGC-AGCTAC-GACCAAATGCAAAGTCAACAGAAAGTATTTCCCAT-TCAGTTAGGGA
128 CTACATGGGCTA-CTACTTA-CATATGCAGAGTCAAC--AAAGTATTTCACATAT-AGTTAGCAA
* *
7015854 AGAAACAGAGGAAACACAATTAGC-AGTTCACTAAACTCACCGAGAAGATTGAACTCCCCTCCAT
188 AGAAACAGAGGAAACACAATTA-CTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCAT
*
7015918 TAACACACAAC
251 TGACACACAAC
* * * * * * *
7015929 GCAAAGCC-ATAATAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGAAGTCAAATTTG
1 GCTAA-CCGATATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * * ** *
7015993 AGCACTTAGTCTA-TAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCACCAATGTCATC
65 AGCACCTAGTCTATTAA-GT-TAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATC
*
7016057 CTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGA
128 CTACATGGGCTACTACTTACATATGCAGAGTC-A-ACAAAGTATTTCACATATAGTTAGCAAAGA
*
7016122 AAC--A--AAAGA-AA--ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATTGA
191 AACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCC-ATTGA
*
7016180 CACACAGC
254 CACACAAC
* ** * * *
7016188 GCTAACAGATAGTTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAAGAAGTCAAA-TCT
1 GCTAACCGATA-TTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTC-
* * **
7016251 GAGCACCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAA-CATATCC
64 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCC
* * *** * * * * * * **
7016315 CAGACAAGCTACTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATTTAGTTAGTGAAGAA
129 TACATGGGCTACTACTTACATATGCAGAGTCAAC--AAAGTATTTCACATATAGTTAGCAAAGAA
* * *
7016380 ACAGGGGAAACACAATTAAC-AGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCATTG--
192 ACAGAGGAAACACAATT-ACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCATTGAC
7016442 ACACAAC
255 ACACAAC
* ** *
7016449 ACTAATCC-ATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAAGAAGTCAAATT
1 GCTAA-CCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGT-TCAACAAGAAGTCAAATT
* * * * * * *
7016512 GGAGCACATAGTCTACTAGGTTAATTCTTCCATTGGTCAAACTAGTCAATCACACCAAAATGCCA
63 CGAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACC--AATG---
* * * **
7016577 AATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACACAGTATTTCACACATAACTAGC
123 --TTATCCTACATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGC
* *
7016639 AGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGAACTCCCCTCCA
186 AAAGAAACAGAGGAAACACAATTACTAGTTCA-CAAACTCACCAAGAGGATTGAACTCCCCTCCA
* *
7016704 TTGACACAAAAT
250 TTGACACACAAC
* * * *
7016716 GCTAACCGATAATTAAAACCCCTTAAAAGG-TGCCATGGACACCATTCAAGAATAAGTCAAATTC
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCT-CCATTGACACCGTTCAACAAGAAGTCAAATTC
* * * * *
7016780 AAGCACCTAGTGGTCCTAGTCT-A-CTAAGTTTTTCCTTTGCTCAAACTGGTCAATCACACCAAT
64 GAGCACCTA---GT-CTA-T-TAAGTTAA-TTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAT
* * * * * *** *
7016843 GGGTTAATCCTATATGGGTTACTACTTACATATACAGAGCCAACACCAAGTGTTTCACACGCAGC
122 --GTT-ATCCTACATGGGCTACTACTTACATATGCAGAGTCAACA--AAGTATTTCACATATAGT
** * * * * * *
7016908 TAGTGAAGAAACAGAGAAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAACTCCCC
182 TAGCAAAGAAACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCC
* **
7016973 TCCATTGACACATAGT
246 TCCATTGACACACAAC
** * * * * * * *
7016989 GCTAACAAATAATTAAAACCTCTT-ATAGGCGCCATTGACACCATTCAAGAAGAAGTCAATTTCA
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * *** ** * * *
7017053 AGCACCAGCTGGTCCTAGTCTTTTAAGGTT-TTGATTTGCTCAAACAAGTCGATCACACCAATGG
65 AGCA-C--CTAGT-CTATTAAGTTAA--TTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAT--
* * * * * * *
7017117 GTTAATCTTAAATGAAG-TATTACTTACACATGCAGAGTCCATACAAAATATTTCACATATAGCT
122 GTT-ATCCTACATG-GGCTACTACTTACATATGCAGAGT-CA-ACAAAGTATTTCACATATAGTT
* * *
7017181 AGCTAAA-AAACAGAGGAAACACAATCAATAGTTCACTATAACTCACCAAGAGGATTGAACTCTC
183 AGC-AAAGAAACAGAGGAAACACAATTACTAGTTCAC-A-AACTCACCAAGAGGATTGAACTCCC
7017245 CTCCAT
245 CTCCAT
7017251 AGCCATCAAG
Statistics
Matches: 1500, Mismatches: 253, Indels: 176
0.78 0.13 0.09
Matches are distributed among these distances:
252 2 0.00
253 110 0.07
254 3 0.00
255 38 0.03
256 1 0.00
257 53 0.04
258 69 0.05
259 71 0.05
260 10 0.01
261 27 0.02
262 134 0.09
263 75 0.05
264 125 0.08
265 232 0.15
266 86 0.06
267 86 0.06
268 10 0.01
269 3 0.00
270 13 0.01
271 28 0.02
272 178 0.12
273 141 0.09
274 3 0.00
275 2 0.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.24
Consensus pattern (261 bp):
GCTAACCGATATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCGA
GCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCCTA
CATGGGCTACTACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAACAG
AGGAAACACAATTACTAGTTCACAAACTCACCAAGAGGATTGAACTCCCCTCCATTGACACACAA
C
Found at i:7016362 original size:522 final size:522
Alignment explanation
Indices: 7015325--7016743 Score: 1742
Period size: 522 Copynumber: 2.7 Consensus size: 522
7015315 TTCACAAGCA
* * *
7015325 AAGAAACAGAGGAAACACAATTAATAGTTTACTAAACTCACCAAG-AGATTTAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* *
7015389 TGACACACGACGCTAACCGATAACTAAAACCCCTTAAAAGGCTCCATTGACACCG-TCGAACAAG
66 T-ACACACAACGCTAACC-ATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTC-AACAAG
* * * * * *
7015453 AAGTCAAATTCAAGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCAA
128 AAGTCAAATTCGAGCACATAGTCTATAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCAC
*
7015518 CAATGTTATCCTACATGGGCTACAACTTAAATATGCAGAGTC-A-ACAAAGTATTTCACATATAG
193 CAATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
* *
7015581 TTAGCAAAGAAACAAAGGAAACACGATTACTAGTTCACAGAACTCACCAAGAGGATTGAACTCTC
258 TTAGCAAAGAAACAAA--AAACA--A-TACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCC
* * ** * *
7015646 CTCCAATTGACACACAATGCTAACTGATATCAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTT
318 CTCCAATTGACACACAATGCTAACAGATAT-TAAAA-CCCCTTAAAAACCTCCATTGACACTGCT
* * * * *
7015711 CAACAATAAGTCAAATTTGAGCATCCAGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCA
381 CAACAAGAAGTCAAATCTGAGCATCCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCA
* * * *
7015776 ATCTCATCAAAGCATCCTATATAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGTATTTCCC
446 ATCTCATCAAAGCATCCCAGACAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCC
7015841 ATTCAGTTAGGG
511 ATTCAGTTAGGG
* *
7015853 AAGAAACAGAGGAAACACAATTAGCAGTTCACTAAACTCACCGAGAAGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * *
7015918 TAACACACAACGCAAAGCCATAA-TAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGA
66 T-ACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* * * **
7015982 AGTCAAATTTGAGCACTTAGTCTATAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCAC
129 AGTCAAATTCGAGCACATAGTCTATAAGGTC-AATTCTTCCATTGCTCAAACTAGTCAATCTCAC
*
7016047 CAATGTCATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
193 CAATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
*
7016112 TTAGCAAAGAAACAAAAGA-AA-ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCA
258 TTAGCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCA
** *
7016175 ATTGACACACAGCGCTAACAGATAGTTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAA
323 ATTGACACACAATGCTAACAGATA-TTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAA
7016239 GAAGTCAAATCTGAGCA-CCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTC
387 GAAGTCAAATCTGAGCATCC-AGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTC
* ** ** *
7016303 ATCAACA-TATCCCAGACAAGCTA-CTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATT
451 ATCAA-AGCATCCCAGACAAGC-AGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCATT
* *
7016366 TAGTTAGTG
514 CAGTTAGGG
* * *
7016375 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * * * **
7016440 T-GACACAACACTAATCCATAATTAAAACCCCTTAAAAATCTCCATTGACACTTCTCAACAAGAA
66 TACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAA
* * * *
7016504 GTCAAATTGGAGCACATAGTCTACT-AGGTTAATTCTTCCATTGGTCAAACTAGTCAATCACACC
130 GTCAAATTCGAGCACATAGTCTA-TAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACC
* *
7016568 AAAATGCCAAATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACAC--AGTATTTCAC
194 --AATG-----TTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCAC
* ** * * *
7016628 ACATAACTAGCAGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGA
252 ATATAGTTAGCAAAGAAACA-A--AAA-ACAA-TACTAGTTCACAAAACTCACCAAGAGGATTGA
* *
7016693 ACTCCCCTCC-ATTGACACAAAATGCTAACCGATAATTAAAACCCCTTAAAA
312 ACTCCCCTCCAATTGACACACAATGCTAACAGAT-ATTAAAACCCCTTAAAA
7016744 GGTGCCATGG
Statistics
Matches: 776, Mismatches: 87, Indels: 55
0.85 0.09 0.06
Matches are distributed among these distances:
520 45 0.06
521 64 0.08
522 232 0.30
523 3 0.00
524 89 0.11
525 3 0.00
526 4 0.01
527 12 0.02
528 128 0.16
529 157 0.20
530 3 0.00
531 36 0.05
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (522 bp):
AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
TACACACAACGCTAACCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAAG
TCAAATTCGAGCACATAGTCTATAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACCAA
TGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTA
GCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATT
GACACACAATGCTAACAGATATTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAAGAAG
TCAAATCTGAGCATCCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAA
AGCATCCCAGACAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCATTCAGTTAG
GG
Found at i:7017003 original size:273 final size:272
Alignment explanation
Indices: 7016375--7017250 Score: 821
Period size: 272 Copynumber: 3.2 Consensus size: 272
7016365 TTAGTTAGTG
* * * *
7016375 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
* * ** * * * *
7016440 TGACACAACA--CTAATC-CATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAA
66 TGACACAAAATGCTAA-CAAATAATTAAAACCCCTT-AAAGGCGCCATGGACACCAT-TCAAGAA
** * * * *
7016501 GAAGTCAAATTGGAGCA-CA--TAGT-CTA--CTAGGTTAA--TTCTTCCA-TTGGTCAAACTAG
128 GAAGTCAAATTCAAGCACCAGCTGGTCCTAGTCTA--CTAAGGTT-TT-CATTTGCTCAAACAAG
** * *
7016557 TCAATCACACCAAAATGCCAAATT-ATCCTACATG--G-ACTACTTACACATGCAGAGT-CA-AC
189 TCAATCACACC--AATG---GGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATAC
* * * *
7016616 ACAGTATTTCACACATAACTAGC-
249 AAAATATTTCACACACAGCTAGCT
*
7016639 AGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGAACTCCCCTCCA
1 A-AGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
** * *
7016704 TTGACACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGTGCCATGGACACCATTCAAGAAT
65 TTGACACAAAATGCTAACAAATAATTAAAACCCCTT-AAAGGCGCCATGGACACCATTCAAGAAG
* * **
7016769 AAGTCAAATTCAAGCACCTAG-TGGTCCTAGTCTACTAAGTTTTTCCTTTGCTCAAACTGGTCAA
129 AAGTCAAATTCAAGCACC-AGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAA
* * * * *
7016833 TCACACCAATGGGTTAATCCTATATG-GGTTACTACTTACATATACAGAG-CCA-ACACCAAGTG
193 TCACACCAATGGGTTAATCCTAAATGAAG-TACTACTTACACATACAGAGTCCATACA--AAATA
*
7016895 TTTCACACGCAGCTAG-T
255 TTTCACACACAGCTAGCT
* * * * *
7016912 GAAGAAACAGAGAAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAACTCCCCTCCA
1 -AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
* * * * *
7016977 TTGACACATAGTGCTAACAAATAATTAAAACCTCTTATAGGCGCCATTGACACCATTCAAGAAGA
65 TTGACACAAAATGCTAACAAATAATTAAAACCCCTTAAAGGCGCCATGGACACCATTCAAGAAGA
* ** * *
7017042 AGTCAATTTCAAGCACCAGCTGGTCCTAGTCTTTTAAGGTTTTGATTTGCTCAAACAAGTCGATC
130 AGTCAAATTCAAGCACCAGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAATC
* * *
7017107 ACACCAATGGGTTAATCTTAAATGAAGTATTACTTACACATGCAGAGTCCATACAAAATATTTCA
195 ACACCAATGGGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATACAAAATATTTCA
* *
7017172 CATATAGCTAGCT
260 CACACAGCTAGCT
* * *
7017185 AAAAAACAGAGGAAACACAATCAATAGTTCACTATAACTCACCAAGAGGATTGAACTCTCCTCCA
1 AAGAAACAGAGGAAACACAATTAATAGTTCACTA-AACTCACCAAGAGGATTGAACTCCCCTCCA
7017250 T
65 T
7017251 AGCCATCAAG
Statistics
Matches: 508, Mismatches: 75, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
264 1 0.00
265 68 0.13
266 1 0.00
267 54 0.11
268 12 0.02
269 2 0.00
270 7 0.01
271 31 0.06
272 186 0.37
273 142 0.28
274 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (272 bp):
AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
TGACACAAAATGCTAACAAATAATTAAAACCCCTTAAAGGCGCCATGGACACCATTCAAGAAGAA
GTCAAATTCAAGCACCAGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAATCA
CACCAATGGGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATACAAAATATTTCAC
ACACAGCTAGCT
Found at i:7018852 original size:26 final size:24
Alignment explanation
Indices: 7018813--7018860 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
7018803 TCAAAAATAT
*
7018813 AAAAAAATATTAAATATTAAATATTA
1 AAAAAAATACTAAA-A-TAAATATTA
*
7018839 AAAAAAATGCTAAAATAAATAT
1 AAAAAAATACTAAAATAAATAT
7018861 AAACTTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 1 0.05
26 12 0.60
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAAAAATACTAAAATAAATATTA
Found at i:7018978 original size:17 final size:17
Alignment explanation
Indices: 7018948--7018981 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7018938 ATTTTTACCC
**
7018948 TTTAAATTTTTAAAAAT
1 TTTAAATTAATAAAAAT
7018965 TTTAAATTAATAAAAAT
1 TTTAAATTAATAAAAAT
7018982 AAAATTATAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTAAATTAATAAAAAT
Found at i:7019188 original size:22 final size:22
Alignment explanation
Indices: 7019157--7019199 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7019147 TATGCTTAAA
* *
7019157 ATATTTAAAATTTTATAAAAAC
1 ATATTAAAAATTCTATAAAAAC
7019179 ATATTAAAAATTCTATAAAAA
1 ATATTAAAAATTCTATAAAAA
7019200 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATTAAAAATTCTATAAAAAC
Found at i:7019769 original size:37 final size:38
Alignment explanation
Indices: 7019728--7019815 Score: 94
Period size: 37 Copynumber: 2.4 Consensus size: 38
7019718 TTTTTTTGTA
**
7019728 ATTTATAATAATTTAT-TTGTTTTTTGTA-TTTTATAAT
1 ATTTATAATAATTTATATT-TTTTTCATATTTTTATAAT
*
7019765 ATTTATAAGT-GTTTATATTTTTTTCATATTTTTATAAT
1 ATTTATAA-TAATTTATATTTTTTTCATATTTTTATAAT
*
7019803 -TTTTTAATAATTT
1 ATTTATAATAATTT
7019816 TATGATAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
36 1 0.02
37 29 0.69
38 12 0.29
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.65
Consensus pattern (38 bp):
ATTTATAATAATTTATATTTTTTTCATATTTTTATAAT
Found at i:7019798 original size:19 final size:19
Alignment explanation
Indices: 7019755--7019818 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
7019745 TGTTTTTTGT
*
7019755 ATTTTATAA-TATTT-ATA
1 ATTTTATAATTTTTTAATA
* *
7019772 AGTGTTTATATTTTTTTCATA
1 A-T-TTTATAATTTTTTAATA
*
7019793 TTTTTATAATTTTTTAATA
1 ATTTTATAATTTTTTAATA
7019812 ATTTTAT
1 ATTTTAT
7019819 GATAAAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.03
18 1 0.03
19 27 0.73
20 5 0.14
21 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (19 bp):
ATTTTATAATTTTTTAATA
Found at i:7023780 original size:36 final size:36
Alignment explanation
Indices: 7023728--7023801 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
7023718 GAAAGAAAGC
*
7023728 AGAGAAAGACTTATCTTAATTTGAGCTTGGGTTAGA
1 AGAGAAAGACTCATCTTAATTTGAGCTTGGGTTAGA
7023764 AGAGAAAGACTCATCTTAATTTGAGCTTGGGTTAGA
1 AGAGAAAGACTCATCTTAATTTGAGCTTGGGTTAGA
7023800 AG
1 AG
7023802 CTTTAAGTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (36 bp):
AGAGAAAGACTCATCTTAATTTGAGCTTGGGTTAGA
Found at i:7025635 original size:32 final size:32
Alignment explanation
Indices: 7025599--7025664 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
7025589 TTAATTAACC
*
7025599 AATGAATTATCAAATTAAATTAATCAATTTAT
1 AATGAATTATCAAATTAAAGTAATCAATTTAT
* * * *
7025631 AATGAGTTATTAAGTTCAAGTAATCAATTTAT
1 AATGAATTATCAAATTAAAGTAATCAATTTAT
7025663 AA
1 AA
7025665 GTTTATGATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (32 bp):
AATGAATTATCAAATTAAAGTAATCAATTTAT
Found at i:7026206 original size:30 final size:30
Alignment explanation
Indices: 7026170--7026233 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
7026160 AATTAGTGGT
*
7026170 GATTCTTTATTGATGAAAAGGATATGATAA
1 GATTCTTTATTGATGAAAAGGATATGACAA
7026200 GATTCTTTATTGATGAAAAGGATATGACAA
1 GATTCTTTATTGATGAAAAGGATATGACAA
7026230 GATT
1 GATT
7026234 GGAAAAGGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (30 bp):
GATTCTTTATTGATGAAAAGGATATGACAA
Found at i:7033174 original size:254 final size:249
Alignment explanation
Indices: 7032824--7033535 Score: 872
Period size: 254 Copynumber: 2.8 Consensus size: 249
7032814 AACCATGTTT
*
7032824 AATTGGAATAAACAATTAATTAAAGAAATCTCGAGTAGCAGTGAAAAAAAACTTCAAAAGCAACG
1 AATTGGAATAAACAATTAA-TAAAGAAATCTCGATTAGCAGT---AAAAAACTTCAAAAGCAACG
* *
7032889 GAGAGAAACCAATAAAATGCAATACAATCTCGTCAACTAAGTATTACACTGTTTTTGACTGAACT
62 GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGA-TGAACT
* *
7032954 ATGTTCAACTTGAATAAACAGCTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAGAATCAAA
126 ATGTTCAA-TTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAA-AAAAAAAATCAAA
* * * *
7033019 AGCAAAATGCAAT-TAATCACATCTGACTAAGTATTACACTGTTTTCTGTTGAACTAAGGTA
189 AGCAAAATGCAATAAAATCACATC-GACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
* *
7033080 AATTGGAATTAACAATTAACTGAAGAAATCTCGATTAGCAGTAAAAGAACTTCAAAAGCAACGGA
1 AATTGGAATAAACAATTAA-TAAAGAAATCTCGATTAGCAGTAAAA-AACTTCAAAAGCAACGGA
7033145 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGGATGAACTAT
64 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTT-GATGAACTAT
*
7033210 GTTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAAAAAAAAAAACCAAAA
128 GTTCAA-TTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTG--AAAAAAAAAATCAAAA
* * *
7033275 GCAAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCTGATGAAATAAGTTC
190 GCAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
* * * * *
7033335 AATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATT
1 AATTGGAATAAACAATTAAT-AAAGAAATC-TCGATTAGCAGTAAAAAAC-TTCAAAAGC-AA--
* * * * * * * ** * *
7033400 AGAAAAAAAAAACAGTAAAATACAATACAATCACAACGACTAAGTATTACACTGTTATCTGATGG
60 CG-GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTT-TTTGATGA
* * * *
7033465 ACTAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTG--AAAAACAATC
123 ACTATGTTCAATT-GAATAAACAACTAATTAAAGAAATCTT-GATTAGCAGTGAAAAAAAAAATC
7033528 AAAAGCAA
186 AAAAGCAA
7033536 TTAGAAAAAG
Statistics
Matches: 401, Mismatches: 40, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
253 4 0.01
254 124 0.31
255 85 0.21
256 70 0.17
257 18 0.04
259 3 0.01
260 85 0.21
261 12 0.03
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (249 bp):
AATTGGAATAAACAATTAATAAAGAAATCTCGATTAGCAGTAAAAAACTTCAAAAGCAACGGAGA
GAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGATGAACTATGTT
CAATTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAAAAAAAAATCAAAAGCAAAA
TGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
Found at i:7033426 original size:139 final size:139
Alignment explanation
Indices: 7033277--7033706 Score: 641
Period size: 139 Copynumber: 3.1 Consensus size: 139
7033267 AACCAAAAGC
* * *
7033277 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCTGATGAAATAAGTTCAATTGGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
7033342 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
7033407 AAAAACAGT
131 AAAAACAGT
* * *
7033416 AAAATACAATACAATCACAACGACTAAGTATTACACTGTTATCTGATGGACTAAGTTCAATTGGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
7033481 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGC-AATTAGAAAAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
7033545 GAAAAACAGT
131 -AAAAACAGT
* *
7033555 AAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTCGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
* * * * * * * * * *
7033620 ATAAACAATTAATTAAACAAATCTT-GAGTAGCAGTTTAAAAAAAATTAAAAGCAACTGAG-AAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAG-TGAAAAACAATCAAAAGCAAATTAGAAAA
*
7033683 ACAAAACAGT
130 AAAAAACAGT
*
7033693 AGAATACAATAAAA
1 AAAATACAATAAAA
7033707 ACTCGTCAAC
Statistics
Matches: 266, Mismatches: 22, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
138 38 0.14
139 224 0.84
140 4 0.02
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.23
Consensus pattern (139 bp):
AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
AAAAACAGT
Found at i:7034380 original size:14 final size:13
Alignment explanation
Indices: 7034356--7034396 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
7034346 TTGGGCTCGG
7034356 TTCCATTTTTTAT
1 TTCCATTTTTTAT
7034369 TTCCATTTTTTTAT
1 TTCCA-TTTTTTAT
7034383 ATT--ATTTTTTAT
1 -TTCCATTTTTTAT
7034395 TT
1 TT
7034397 AGAATTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 8 0.31
13 6 0.23
14 8 0.31
15 2 0.08
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (13 bp):
TTCCATTTTTTAT
Found at i:7036371 original size:17 final size:15
Alignment explanation
Indices: 7036325--7036377 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
7036315 AACAAAGTAA
*
7036325 AAAGAAAAAGA-ATAG
1 AAAGAAACAGAGA-AG
7036340 AAAGAAACAGAGAAG
1 AAAGAAACAGAGAAG
*
7036355 AAACGAAACAAGGGAAG
1 AAA-GAAAC-AGAGAAG
7036372 AAAGAA
1 AAAGAA
7036378 GGAGAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 15 0.45
16 9 0.27
17 9 0.27
ACGTcount: A:0.68, C:0.06, G:0.25, T:0.02
Consensus pattern (15 bp):
AAAGAAACAGAGAAG
Found at i:7037215 original size:18 final size:18
Alignment explanation
Indices: 7037183--7037232 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
7037173 GACTGTCTAC
* *
7037183 TACTAAATAATTGACTGT
1 TACTAAATAAATGACTGA
7037201 TAC-AGAATAAATGACTGA
1 TACTA-AATAAATGACTGA
7037219 TACTAAATAAATGA
1 TACTAAATAAATGA
7037233 ATATTACTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (18 bp):
TACTAAATAAATGACTGA
Found at i:7037240 original size:18 final size:18
Alignment explanation
Indices: 7037183--7037240 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
7037173 GACTGTCTAC
* *
7037183 TACTAAATAATTGACTGT
1 TACTAAATAAATGACTAT
7037201 TAC-AGAATAAATGACTGA-
1 TACTA-AATAAATGACT-AT
*
7037219 TACTAAATAAATGAATAT
1 TACTAAATAAATGACTAT
7037237 TACT
1 TACT
7037241 GATTAACCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
17 2 0.06
18 30 0.91
19 1 0.03
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (18 bp):
TACTAAATAAATGACTAT
Found at i:7039072 original size:40 final size:40
Alignment explanation
Indices: 7039032--7039159 Score: 120
Period size: 41 Copynumber: 3.2 Consensus size: 40
7039022 TGGCATCCAG
*
7039032 TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAG
1 TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAA
* * * ** *
7039072 TGTCTCATCTGCTAAACCGAAGT-A-AA-TTGACACCCAA
1 TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAA
* *
7039109 TGCCTCATCGAATTAATCTGAAA-TAATAATTTGACACCCAA
1 TGCCTCATCGGA-TAAT-TCAAAGTAATAATTTGACACCCAA
*
7039150 TGTCTCATCG
1 TGCCTCATCG
7039160 ATTTAAGTTC
Statistics
Matches: 67, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
37 18 0.27
38 6 0.09
39 4 0.06
40 19 0.28
41 20 0.30
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (40 bp):
TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAA
Found at i:7040830 original size:9 final size:9
Alignment explanation
Indices: 7040805--7040844 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
7040795 GCTTATTATG
7040805 TTAATTAAGT
1 TTAATTAA-T
*
7040815 TTGATTAAT
1 TTAATTAAT
7040824 TTAATTAAT
1 TTAATTAAT
7040833 TTAATTAAT
1 TTAATTAAT
7040842 TTA
1 TTA
7040845 GGTTAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (9 bp):
TTAATTAAT
Found at i:7048286 original size:20 final size:21
Alignment explanation
Indices: 7048246--7048295 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
7048236 TATCTAGAAG
* *
7048246 TGAAATCAAGTTGAGTTGAGT
1 TGAATTCAAGTTGAGTCGAGT
7048267 TGAATTCAAG-TGAGTCGAGT
1 TGAATTCAAGTTGAGTCGAGT
7048287 TGAATTCAA
1 TGAATTCAA
7048296 ATATTTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (21 bp):
TGAATTCAAGTTGAGTCGAGT
Found at i:7049028 original size:24 final size:24
Alignment explanation
Indices: 7049001--7049052 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7048991 TTAGTAAGTC
*
7049001 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7049025 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7049049 AAAT
1 AAAT
7049053 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7060907 original size:26 final size:27
Alignment explanation
Indices: 7060844--7060907 Score: 67
Period size: 31 Copynumber: 2.3 Consensus size: 27
7060834 ATTTGGTCGT
**
7060844 TTCACTATTTTAAAGTTTTTATTTAAG
1 TTCACTATTCAAAAGTTTTTATTTAAG
7060871 TTACTGGACTATTCAAAAGTTTTTATTTAAG
1 TT-C---ACTATTCAAAAGTTTTTATTTAAG
7060902 -TCACTA
1 TTCACTA
7060908 GGCTATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
26 4 0.13
27 2 0.06
28 1 0.03
29 1 0.03
30 1 0.03
31 22 0.71
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.48
Consensus pattern (27 bp):
TTCACTATTCAAAAGTTTTTATTTAAG
Found at i:7060925 original size:31 final size:31
Alignment explanation
Indices: 7060855--7060917 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
7060845 TCACTATTTT
*
7060855 AAAGTTTTTATTTAAGTTACTGGACTATTCA
1 AAAGTTTTTATTTAAGTCACTGGACTATTCA
7060886 AAAGTTTTTATTTAAGTCACTAGG-CTATTCA
1 AAAGTTTTTATTTAAGTCACT-GGACTATTCA
7060917 A
1 A
7060918 TTTTTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (31 bp):
AAAGTTTTTATTTAAGTCACTGGACTATTCA
Found at i:7061716 original size:33 final size:33
Alignment explanation
Indices: 7061669--7061733 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
7061659 TAAGATTTAC
* *
7061669 TAAGAATCGAGTTGGACGATGATGCTTGAATGT
1 TAAGAATCGAGTTGGACAATGATGCTCGAATGT
* *
7061702 TAAGAATTGGGTTGGACAATGATGCTCGAATG
1 TAAGAATCGAGTTGGACAATGATGCTCGAATG
7061734 GTCAACTACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (33 bp):
TAAGAATCGAGTTGGACAATGATGCTCGAATGT
Found at i:7062300 original size:34 final size:34
Alignment explanation
Indices: 7062232--7062307 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
7062222 TCTTTTTTCC
* * *
7062232 TTTTTTTAATTTTTTTTAAAATGTTTTTACTTTA
1 TTTTTTTAATTTTTTTTAAAATATTATTAATTTA
*
7062266 TTTTTTT-ATATTTTTTTAAATTATTATTAATTTA
1 TTTTTTTAAT-TTTTTTTAAAATATTATTAATTTA
7062300 TATTTTTT
1 T-TTTTTT
7062308 TTAAAATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 2 0.06
34 28 0.78
35 6 0.17
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (34 bp):
TTTTTTTAATTTTTTTTAAAATATTATTAATTTA
Found at i:7070846 original size:45 final size:45
Alignment explanation
Indices: 7070796--7070883 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
7070786 GTTTCGTCAT
7070796 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAAAA
1 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAAAA
*
7070841 AAAAACATAAAAATAAATGACTAAATTATACTCAATGACTAAA
1 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAA
7070884 TATTAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (45 bp):
AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAAAA
Found at i:7076107 original size:32 final size:33
Alignment explanation
Indices: 7076066--7076127 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
7076056 CACTAAATCA
*
7076066 TAAATAAAATTTCGTTTT-ATTTATTAAATTACT
1 TAAATAAAATTTC-TTTTAAGTTATTAAATTACT
7076099 TAAA-AAAATTTCTTTTAAGTTATTAAATT
1 TAAATAAAATTTCTTTTAAGTTATTAAATT
7076128 GTTAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.15
32 19 0.70
33 4 0.15
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (33 bp):
TAAATAAAATTTCTTTTAAGTTATTAAATTACT
Found at i:7084066 original size:88 final size:86
Alignment explanation
Indices: 7083968--7084135 Score: 241
Period size: 88 Copynumber: 1.9 Consensus size: 86
7083958 TATGAGCTGT
* *
7083968 AAAAAGAAATGGAACCTTTTAAGACCCACCATAGCAGGTAGGTTGATATTTTTTCTTTTATGTT-
1 AAAAAGAAATGGAACCTTTTAAGACCCACCATAGAAGATAGGTTGATA-TTTTTC---TATGTTA
*
7084032 AGAGCATGAAATGAAGGTGACTACC
62 AAAGCATGAAATGAAGGTGACTACC
* *
7084057 AAAAA-AAATGGAATCTTTTAAGACCCACCATAGAATATAGGTTGATATTTTTCTATGTTAAAAG
1 AAAAAGAAATGGAACCTTTTAAGACCCACCATAGAAGATAGGTTGATATTTTTCTATGTTAAAAG
7084121 CATGAAATGAAGGTG
66 CATGAAATGAAGGTG
7084136 TGACTAGGTG
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
84 6 0.08
85 18 0.25
87 6 0.08
88 38 0.52
89 5 0.07
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.30
Consensus pattern (86 bp):
AAAAAGAAATGGAACCTTTTAAGACCCACCATAGAAGATAGGTTGATATTTTTCTATGTTAAAAG
CATGAAATGAAGGTGACTACC
Found at i:7086627 original size:64 final size:65
Alignment explanation
Indices: 7086507--7086637 Score: 176
Period size: 64 Copynumber: 2.0 Consensus size: 65
7086497 CGGAAAATAT
* * *
7086507 TTTAATAATTTCTTAAAGAAAAGGATGAAATAAAGGACGTATAATTTTGCTAATTAGATTCAAAG
1 TTTAATAATTTCTAAAAGAAAAGGA-GAAATAAACGACGTATAATTTTACTAATTAGATTCAAAG
7086572 G
65 G
* * *
7086573 TTTAATAATTTCCTAAAAGAAAA-GA-AAGTAAACGAGGTATAATTTTACTGATTAGATTCAAAG
1 TTTAATAATTT-CTAAAAGAAAAGGAGAAATAAACGACGTATAATTTTACTAATTAGATTCAAAG
7086636 G
65 G
7086637 T
1 T
7086638 GATTTTTAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
64 35 0.60
66 13 0.22
67 10 0.17
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (65 bp):
TTTAATAATTTCTAAAAGAAAAGGAGAAATAAACGACGTATAATTTTACTAATTAGATTCAAAGG
Found at i:7088272 original size:6 final size:6
Alignment explanation
Indices: 7088263--7088305 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
7088253 TCTTATGGTC
* *
7088263 AAATTT AAATTT AAATTCA AATATTT ACATTT AAATTT AAATT
1 AAATTT AAATTT AAATT-T AA-ATTT AAATTT AAATTT AAATT
7088306 GAGATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
6 25 0.81
7 3 0.10
8 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (6 bp):
AAATTT
Found at i:7088294 original size:20 final size:20
Alignment explanation
Indices: 7088265--7088304 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7088255 TTATGGTCAA
7088265 ATTTAAATTTAAATTCAAAT
1 ATTTAAATTTAAATTCAAAT
* *
7088285 ATTTACATTTAAATTTAAAT
1 ATTTAAATTTAAATTCAAAT
7088305 TGAGATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAAATTTAAATTCAAAT
Found at i:7089311 original size:8 final size:8
Alignment explanation
Indices: 7089298--7089323 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7089288 TAACGAATTC
7089298 ATATTTAA
1 ATATTTAA
7089306 ATATTTAA
1 ATATTTAA
7089314 ATATTTAA
1 ATATTTAA
7089322 AT
1 AT
7089324 TCAATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:7092715 original size:12 final size:12
Alignment explanation
Indices: 7092698--7092723 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7092688 AAAATAGGGC
7092698 TTTAGCGGCGTT
1 TTTAGCGGCGTT
7092710 TTTAGCGGCGTT
1 TTTAGCGGCGTT
7092722 TT
1 TT
7092724 ATCAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:7092813 original size:30 final size:31
Alignment explanation
Indices: 7092778--7092836 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
7092768 CGTTTTAACA
*
7092778 AAAACGCCACT-AAAACCAGTGCAATAGCAC
1 AAAACGCCACTAAAAACCAGAGCAATAGCAC
* *
7092808 AAAACGCCGCTAAAAACCAGAGCATTAGC
1 AAAACGCCACTAAAAACCAGAGCAATAGC
7092837 GACGCTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.46, C:0.29, G:0.15, T:0.10
Consensus pattern (31 bp):
AAAACGCCACTAAAAACCAGAGCAATAGCAC
Found at i:7093052 original size:21 final size:21
Alignment explanation
Indices: 7093028--7093179 Score: 142
Period size: 21 Copynumber: 6.9 Consensus size: 21
7093018 CATTATAGTT
*
7093028 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* * *
7093049 TATGGTTTGGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
7093070 TATGAGTTAATTATGGTTTAAGATA
1 TATG-G-T--TTAGGGTTTAAGATA
*
7093095 TATGGTTTAAGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* * *
7093116 TATGGTTTAGGGTTTATGGTT
1 TATGGTTTAGGGTTTAAGATA
*
7093137 TATGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
7093162 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
7093180 GTTTAAGAGT
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
21 66 0.63
22 4 0.04
23 2 0.02
24 4 0.04
25 29 0.28
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:7093102 original size:67 final size:67
Alignment explanation
Indices: 7093028--7093179 Score: 259
Period size: 67 Copynumber: 2.3 Consensus size: 67
7093018 CATTATAGTT
* * *
7093028 TATGGTTTATGGTTTAAGATATATGGTTTGGGGTTTAAGGTTTATGAGTTAATTATGGTTTAAGA
1 TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATGGTTTAAGA
7093093 TA
66 TA
*
7093095 TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTATGGTTTATGAGTTAACTATGGTTTAAGA
1 TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATGGTTTAAGA
7093160 TA
66 TA
*
7093162 TATGGTTTAGGGTTTAAG
1 TATGGTTTAAGGTTTAAG
7093180 GTTTAAGAGT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 80 1.00
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (67 bp):
TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATGGTTTAAGA
TA
Found at i:7093155 original size:46 final size:46
Alignment explanation
Indices: 7093105--7093194 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
7093095 TATGGTTTAA
* *
7093105 GGTTTAAGATATATGGTTTAGGGTTTATGGTTTATGAGTTAACTAT
1 GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACTAT
7093151 GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACT
1 GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACT
7093195 CGTATTTGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.43
Consensus pattern (46 bp):
GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACTAT
Found at i:7093186 original size:7 final size:7
Alignment explanation
Indices: 7093020--7093184 Score: 78
Period size: 7 Copynumber: 22.4 Consensus size: 7
7093010 TTAATTATCA
*
7093020 TTATAGT
1 TTATGGT
7093027 TTATGGT
1 TTATGGT
7093034 TTATGGT
1 TTATGGT
* *
7093041 TTAAGAT
1 TTATGGT
*
7093048 ATATGGT
1 TTATGGT
**
7093055 TTGGGGT
1 TTATGGT
*
7093062 TTAAGGT
1 TTATGGT
7093069 TTATGAGTT
1 TTATG-G-T
7093078 AATTATGGT
1 --TTATGGT
* *
7093087 TTAAGAT
1 TTATGGT
*
7093094 ATATGGT
1 TTATGGT
*
7093101 TTAAGGT
1 TTATGGT
* *
7093108 TTAAGAT
1 TTATGGT
*
7093115 ATATGGT
1 TTATGGT
*
7093122 TTAGGGT
1 TTATGGT
7093129 TTATGGT
1 TTATGGT
7093136 TTATGAGT
1 TTATG-GT
7093144 TAACTATGGT
1 T---TATGGT
* *
7093154 TTAAGAT
1 TTATGGT
*
7093161 ATATGGT
1 TTATGGT
*
7093168 TTAGGGT
1 TTATGGT
*
7093175 TTAAGGT
1 TTATGGT
7093182 TTA
1 TTA
7093185 AGAGTTAACT
Statistics
Matches: 116, Mismatches: 34, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
7 97 0.84
8 4 0.03
9 2 0.02
10 4 0.03
11 9 0.08
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:7093612 original size:74 final size:74
Alignment explanation
Indices: 7093524--7093896 Score: 633
Period size: 74 Copynumber: 5.0 Consensus size: 74
7093514 TGGCTTCCAA
*
7093524 ATTATATCAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
*
7093589 AAAAACTCT
66 AAAAACACT
* ***
7093598 ATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCGTTTTAAAAAAAACGCCACA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
7093663 AAAAACACT
66 AAAAACACT
7093672 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCG-TTTTTTAAAAGACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAA-ACGCCAC
7093736 -AAAAACACT
65 AAAAAACACT
* *
7093745 ATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCATTTTTTTAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTT-AAAAACGCCAC
7093810 AAAAAACACT
65 AAAAAACACT
7093820 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAATCGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAA-CGCCAC
7093885 AAAAAACACT
65 AAAAAACACT
7093895 AT
1 AT
7093897 GAAAACGGCG
Statistics
Matches: 280, Mismatches: 14, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
73 60 0.21
74 138 0.49
75 82 0.29
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.27
Consensus pattern (74 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCGTTTTTTTAAAAACGCCACA
AAAAACACT
Found at i:7094049 original size:18 final size:18
Alignment explanation
Indices: 7094026--7094069 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7094016 CCCAAAACAG
* *
7094026 ATTTCCCC-AATTCTCTAC
1 ATTTCCCCTAA-TCCCTAA
7094044 ATTTCCCCTAATCCCTAA
1 ATTTCCCCTAATCCCTAA
7094062 ATTTCCCC
1 ATTTCCCC
7094070 CAAAATCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.23, C:0.41, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTTCCCCTAATCCCTAA
Found at i:7098290 original size:43 final size:43
Alignment explanation
Indices: 7098194--7098343 Score: 139
Period size: 42 Copynumber: 3.6 Consensus size: 43
7098184 GAAATATATA
* **** * *
7098194 TGGTCTTTAGTGGCGTTTTTGGGGAAAGCGTCGCTAAAGATCA
1 TGGTCTTTAGCGGCGTTTTTTAAAAAAGCGTCGCTAAAGGTCC
* *
7098237 T-GTCGTTAGCGGCGTTTTTTAAAAAAGCGTCACTAAAGGTCC
1 TGGTCTTTAGCGGCGTTTTTTAAAAAAGCGTCGCTAAAGGTCC
* * *
7098279 TGGTCTTTAGCGGCG-CTTTTAAAAAAGCGCCGTTAAAGGTCC
1 TGGTCTTTAGCGGCGTTTTTTAAAAAAGCGTCGCTAAAGGTCC
* *
7098321 TGTTCTTT---GGCGTTTCTTAAAAA
1 TGGTCTTTAGCGGCGTTTTTTAAAAA
7098344 TGCCACTAAT
Statistics
Matches: 88, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 4 0.05
40 8 0.09
42 63 0.72
43 13 0.15
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TGGTCTTTAGCGGCGTTTTTTAAAAAAGCGTCGCTAAAGGTCC
Found at i:7107950 original size:42 final size:42
Alignment explanation
Indices: 7107889--7107976 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
7107879 AGTTGATAGA
*
7107889 ATAATTAGACAGCAACGTGCCACTTATAACTCAAGCTAACGT
1 ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
* *
7107931 ATAATTAGACAGCAGCGTGCCACGTATAGCTCAAGCTAACGT
1 ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
7107973 ATAA
1 ATAA
7107977 AGACCTACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
Found at i:7108308 original size:14 final size:15
Alignment explanation
Indices: 7108278--7108308 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7108268 TAATATTTTA
7108278 AAATTTATTTAACTT
1 AAATTTATTTAACTT
7108293 AAATTTATTT-ACTT
1 AAATTTATTTAACTT
7108307 AA
1 AA
7108309 TATATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATTTATTTAACTT
Found at i:7108546 original size:84 final size:84
Alignment explanation
Indices: 7108429--7108597 Score: 311
Period size: 84 Copynumber: 2.0 Consensus size: 84
7108419 ACAGAGTATC
* * *
7108429 AATAAGAGTAGAGAAAGGGTCGTATAGAAGAAGGCTGATTCATCAACAACGGGGTCGAGAGTTGA
1 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACCGGGTCGAGAGTTGA
7108494 AAAACTGAGAATGGAGAGG
66 AAAACTGAGAATGGAGAGG
7108513 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACCGGGTCGAGAGTTGA
1 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACCGGGTCGAGAGTTGA
7108578 AAAACTGAGAATGGAGAGG
66 AAAACTGAGAATGGAGAGG
7108597 A
1 A
7108598 CTTAGCCTCT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (84 bp):
AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACCGGGTCGAGAGTTGA
AAAACTGAGAATGGAGAGG
Found at i:7120345 original size:18 final size:18
Alignment explanation
Indices: 7120317--7120360 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
7120307 GTTTTACCGA
7120317 AGATCAAATTCAT-AGTTTG
1 AGAT-AAATTCATCA-TTTG
7120336 AGATAAATTCATCATTTG
1 AGATAAATTCATCATTTG
7120354 AGATAAA
1 AGATAAA
7120361 AGTTACCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (18 bp):
AGATAAATTCATCATTTG
Found at i:7121187 original size:30 final size:31
Alignment explanation
Indices: 7121163--7121221 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7121153 GTAAATACTC
* **
7121163 AAAATTTGAGGGGTTAA-AGTGTAAATATGA
1 AAAATTTGAAGGGCCAATAGTGTAAATATGA
7121193 AAAATTTGAAGGGCCAATAGTGTAAATAT
1 AAAATTTGAAGGGCCAATAGTGTAAATAT
7121222 TTTAAGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGGCCAATAGTGTAAATATGA
Found at i:7121459 original size:20 final size:21
Alignment explanation
Indices: 7121425--7121478 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
7121415 TGATGATCTT
*
7121425 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
7121446 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
7121466 TTTTATTATTTTA
1 TTATATTATTTTA
7121479 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:7121482 original size:3 final size:3
Alignment explanation
Indices: 7121464--7121512 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
7121454 TTTAATGAGA
*
7121464 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
7121509 TAT T
1 TAT T
7121513 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:7121484 original size:11 final size:11
Alignment explanation
Indices: 7121468--7121506 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
7121458 ATGAGATATT
7121468 TTATTATTTTA
1 TTATTATTTTA
*
7121479 TTATTATTTCA
1 TTATTATTTTA
7121490 TTATTATTTTA
1 TTATTATTTTA
7121501 TTATTA
1 TTATTA
7121507 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:7121492 original size:19 final size:19
Alignment explanation
Indices: 7121464--7121505 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7121454 TTTAATGAGA
*
7121464 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
7121483 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
7121502 TATT
1 TATT
7121506 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:7126033 original size:30 final size:29
Alignment explanation
Indices: 7125997--7126084 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 29
7125987 CTTGGGGGTC
7125997 TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCT-GGTTTCTCCCTGG
7126027 TATCAGTGCTTTTCCTTGGTTTCTCCCTGG
1 TATCAGTGCTTTTCC-TGGTTTCTCCCTGG
* * *
7126057 TATCGGTGCTTCTTCGTGGTTTGTCCCT
1 TATCAGTGCTT-TTCCTGGTTTCTCCCT
7126085 TTGATCCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 49 0.92
31 4 0.08
ACGTcount: A:0.06, C:0.27, G:0.22, T:0.45
Consensus pattern (29 bp):
TATCAGTGCTTTTCCTGGTTTCTCCCTGG
Found at i:7127089 original size:20 final size:20
Alignment explanation
Indices: 7127064--7127104 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7127054 AAGAATACAG
7127064 TGTCTATAAATATATGTATT
1 TGTCTATAAATATATGTATT
7127084 TGTCTATAAATATATGTATT
1 TGTCTATAAATATATGTATT
7127104 T
1 T
7127105 ATTCACATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (20 bp):
TGTCTATAAATATATGTATT
Found at i:7127123 original size:106 final size:106
Alignment explanation
Indices: 7126998--7127190 Score: 377
Period size: 106 Copynumber: 1.8 Consensus size: 106
7126988 TGTATATACA
7126998 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
7127063 GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
66 GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
*
7127104 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAGTACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
7127169 GTGTCTATAAATATATGTATTT
66 GTGTCTATAAATATATGTATTT
7127191 ATTCACATTT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 86 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (106 bp):
TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
Found at i:7130340 original size:43 final size:44
Alignment explanation
Indices: 7130292--7130379 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 44
7130282 TCTAATTTGA
* *
7130292 TACCTAAATTTGACACTTTTTCT-TAAGTTGGTACTTAATATTT
1 TACCTAAACTTGACACTTTTTCTCTAAGTTGGTACCTAATATTT
* * * *
7130335 TACCTAAACTTGACTCTTTTTTTCTAATTTGGTACCTAATCTTT
1 TACCTAAACTTGACACTTTTTCTCTAAGTTGGTACCTAATATTT
7130379 T
1 T
7130380 TTTTTGTTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
43 20 0.53
44 18 0.47
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (44 bp):
TACCTAAACTTGACACTTTTTCTCTAAGTTGGTACCTAATATTT
Found at i:7137291 original size:16 final size:16
Alignment explanation
Indices: 7137270--7137300 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7137260 AAATATTTCT
7137270 AAAAAAACAATAATTA
1 AAAAAAACAATAATTA
7137286 AAAAAAACAATAATT
1 AAAAAAACAATAATT
7137301 TTTGGAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAAACAATAATTA
Found at i:7141356 original size:26 final size:26
Alignment explanation
Indices: 7141325--7141380 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
7141315 TGAAATGCCC
7141325 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
7141351 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
7141377 ATCA
1 ATCA
7141381 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:7142847 original size:40 final size:40
Alignment explanation
Indices: 7142700--7142846 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
7142690 CCAACCCAAT
* * *
7142700 TGCCTTCGAGATTTAGCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
* *
7142740 TGCCTTCGGGGCTTATCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
7142780 TGCCTTCGGGACTTAACCCGGATATAATAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
7142820 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
7142847 TCCTTAATTG
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:7148670 original size:25 final size:25
Alignment explanation
Indices: 7148641--7148691 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7148631 AAGATAATTT
7148641 CATTATAGGTTAAAGTGAATGGAAG
1 CATTATAGGTTAAAGTGAATGGAAG
7148666 CATTATAGGTTAAAGTGAATGGAAG
1 CATTATAGGTTAAAGTGAATGGAAG
7148691 C
1 C
7148692 TGTGCACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.27
Consensus pattern (25 bp):
CATTATAGGTTAAAGTGAATGGAAG
Found at i:7148858 original size:70 final size:70
Alignment explanation
Indices: 7148745--7148885 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
7148735 GGACTACTTA
7148745 AGTACCAAGCTCCCTTCGGATCTAATCCTAGACATGCACACCGCCATTGCCACACCTTAACGTCA
1 AGTACCAAGCTCCCTTCGGATCTAATCCTAGACATGCACACCGCCATTGCCACACCTTAACGTCA
7148810 TGTAT
66 TGTAT
*
7148815 AGTACCAAGCTCCCTTCGGATCTAATCCTAGACATGCATACCGCCATTGCCACACCTTAACGTCA
1 AGTACCAAGCTCCCTTCGGATCTAATCCTAGACATGCACACCGCCATTGCCACACCTTAACGTCA
7148880 TGTAT
66 TGTAT
7148885 A
1 A
7148886 TTTCTAGGAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (70 bp):
AGTACCAAGCTCCCTTCGGATCTAATCCTAGACATGCACACCGCCATTGCCACACCTTAACGTCA
TGTAT
Found at i:7151298 original size:26 final size:26
Alignment explanation
Indices: 7151267--7151322 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
7151257 TGAAATGCCC
7151267 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
7151293 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
7151319 ATCA
1 ATCA
7151323 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:7161772 original size:26 final size:25
Alignment explanation
Indices: 7161726--7161796 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
7161716 CTCAAATTGT
*
7161726 ATTTCTCATTTTATCTT-ATAATATCA
1 ATTTCTCATTTCAT-TTAATAAT-TCA
* *
7161752 CTTTCTCATTTCATTTAATAATTTA
1 ATTTCTCATTTCATTTAATAATTCA
*
7161777 ATTTATCAATTTCATTTAAT
1 ATTTCTC-ATTTCATTTAAT
7161797 TTTTTCTCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 9 0.24
26 29 0.76
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (25 bp):
ATTTCTCATTTCATTTAATAATTCA
Found at i:7161780 original size:13 final size:14
Alignment explanation
Indices: 7161759--7161796 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
7161749 TCACTTTCTC
7161759 ATTTCATTTAAT-A
1 ATTTCATTTAATCA
*
7161772 ATTTAATTT-ATCA
1 ATTTCATTTAATCA
7161785 ATTTCATTTAAT
1 ATTTCATTTAAT
7161797 TTTTTCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 2 0.10
13 17 0.81
14 2 0.10
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTCATTTAATCA
Found at i:7162819 original size:19 final size:19
Alignment explanation
Indices: 7162795--7162831 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7162785 AATCATATCT
*
7162795 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
7162814 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
7162832 TGAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7162839 original size:17 final size:19
Alignment explanation
Indices: 7162798--7162839 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7162788 CATATCTTCT
* *
7162798 AAGATTGTATATCATATCT
1 AAGATTGCATATCATATCG
7162817 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
7162834 AAGATT
1 AAGATT
7162840 ATATTTCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 1 0.05
19 14 0.67
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:7163235 original size:45 final size:45
Alignment explanation
Indices: 7163180--7163377 Score: 263
Period size: 45 Copynumber: 4.4 Consensus size: 45
7163170 GGAAGGCGAT
* *
7163180 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
7163225 ATCTGTTATCTTCGATCTGCTCACCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * *
7163270 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
7163314 ATCTGTTATCTCCGATTTGCTCTCCGTCTGATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
7163359 ATCTGTCATCTTGGATCTG
1 ATCTGTTATCTTCGATCTG
7163378 TTTCGATGTA
Statistics
Matches: 133, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
44 39 0.29
45 94 0.71
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:7163301 original size:89 final size:90
Alignment explanation
Indices: 7163180--7163363 Score: 280
Period size: 89 Copynumber: 2.1 Consensus size: 90
7163170 GGAAGGCGAT
** *
7163180 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
7163245 TCACCGTCTAATACAGAGACGCCAA
66 TCACCGTCTAATACAGAGACGCCAA
* * *
7163270 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
* * *
7163334 TCTCCGTCTGATACAGAGATGCCAA
66 TCACCGTCTAATACAGAGACGCCAA
7163359 ATCTG
1 ATCTG
7163364 TCATCTTGGA
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
89 78 0.92
90 7 0.08
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCACCGTCTAATACAGAGACGCCAA
Found at i:7163522 original size:78 final size:78
Alignment explanation
Indices: 7163393--7163687 Score: 484
Period size: 78 Copynumber: 3.8 Consensus size: 78
7163383 ATGTAAACAC
*
7163393 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
7163458 TGGATCTGCTTTA
66 TGGATCTGCTTTA
* * * *
7163471 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTACTTCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
*
7163535 TTGGATCTGCTTCA
65 TTGGATCTGCTTTA
*
7163549 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
7163614 TGGATCTGCTTTA
66 TGGATCTGCTTTA
* * *
7163627 ATAAAGGTCAGATTTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
7163688 TGTTTCTTCG
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 2 0.01
78 195 0.98
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTTA
Found at i:7174291 original size:18 final size:19
Alignment explanation
Indices: 7174255--7174301 Score: 87
Period size: 18 Copynumber: 2.5 Consensus size: 19
7174245 AATCATATCT
7174255 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7174274 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
7174292 TCTAAGATTG
1 TCTAAGATTG
7174302 TATCATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7175062 original size:20 final size:22
Alignment explanation
Indices: 7175016--7175062 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
7175006 TCATTTCTTA
*
7175016 CTAATTACTTCTAATTAAAAAT
1 CTAATTACTCCTAATTAAAAAT
*
7175038 -AAATT-CTCCTAATT-AAAAT
1 CTAATTACTCCTAATTAAAAAT
7175057 CTAATT
1 CTAATT
7175063 TAACTCACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.24
20 12 0.57
21 4 0.19
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (22 bp):
CTAATTACTCCTAATTAAAAAT
Found at i:7182059 original size:26 final size:26
Alignment explanation
Indices: 7182030--7182082 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
7182020 CAAACTTGAA
* *
7182030 TTTCTCGTTTTTCT-TTTCTTTTCTTC
1 TTTCTC-TCTTTCTATTTCGTTTCTTC
7182056 TTTCTCTCTTTCTATTTCGTTTCTTC
1 TTTCTCTCTTTCTATTTCGTTTCTTC
7182082 T
1 T
7182083 CTGTAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.02, C:0.25, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTCTCTCTTTCTATTTCGTTTCTTC
Found at i:7183517 original size:20 final size:20
Alignment explanation
Indices: 7183492--7183533 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7183482 TACAACACAA
*
7183492 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
**
7183512 TTCAATTTTTTATTCAATAT
1 TTCAATTTCATATTCAATAT
7183532 TT
1 TT
7183534 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:7183983 original size:20 final size:20
Alignment explanation
Indices: 7183942--7183988 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7183932 CTGTGAGTTC
**
7183942 TTCTTTCTTTCTATTTTTTT
1 TTCTTTCTTTCTATTTCGTT
*
7183962 TTCTTTCTTTCTGTTTCGTT
1 TTCTTTCTTTCTATTTCGTT
7183982 TTGCTTT
1 TT-CTTT
7183989 TGTCTCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.02, C:0.17, G:0.06, T:0.74
Consensus pattern (20 bp):
TTCTTTCTTTCTATTTCGTT
Found at i:7184102 original size:26 final size:25
Alignment explanation
Indices: 7184052--7184108 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 25
7184042 TAAGTAAAAC
7184052 ATATTATTATATATATTAACTTTAA
1 ATATTATTATATATATTAACTTTAA
7184077 ATTATTATTATA-ATATATATAC-TTAA
1 A-TATTATTATATATAT-TA-ACTTTAA
7184103 ATATTA
1 ATATTA
7184109 AGTAAACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
25 10 0.34
26 17 0.59
27 2 0.07
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
ATATTATTATATATATTAACTTTAA
Found at i:7185852 original size:6 final size:6
Alignment explanation
Indices: 7185843--7185882 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
7185833 TCATCTTCAG
7185843 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATC
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATC
7185883 TTCATCTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (6 bp):
CATCAC
Found at i:7188367 original size:118 final size:118
Alignment explanation
Indices: 7188159--7188395 Score: 447
Period size: 118 Copynumber: 2.0 Consensus size: 118
7188149 GATGCTCAGT
7188159 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
1 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
* *
7188224 GCCGATAATTCTTGAACCCTGTACTGTACAGAATATCCTAGTTCTTTATCGCA
66 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
7188277 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
1 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
*
7188342 GCCGATTATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
66 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
7188395 T
1 T
7188396 TTTCCTTCTT
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 116 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (118 bp):
TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
Found at i:7190483 original size:36 final size:36
Alignment explanation
Indices: 7190429--7190523 Score: 172
Period size: 36 Copynumber: 2.6 Consensus size: 36
7190419 TCAGTCATTC
* *
7190429 TACACTACTAACAGGCAATTCCTGCAATGCCCCTTG
1 TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
7190465 TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
1 TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
7190501 TACACTACTAGCATGCAATTCCT
1 TACACTACTAGCATGCAATTCCT
7190524 ACTATCTAGG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (36 bp):
TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
Found at i:7195156 original size:31 final size:31
Alignment explanation
Indices: 7195082--7195169 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 31
7195072 ACGGTCACAA
* * *
7195082 AACTATTCGAAAATTTTCATTTAAATTACTG
1 AACTATTCGAAAGTTTTCATTTAAGTAACTG
*
7195113 AATTATTCGAAAGTTTTCATTTAAGTAACTG
1 AACTATTCGAAAGTTTTCATTTAAGTAACTG
* * *
7195144 AACTGTTTGAAAGGTTAT-ATTTAAGT
1 AACTATTCGAAA-GTTTTCATTTAAGT
7195170 CACTTAGTTG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
31 44 0.92
32 4 0.08
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (31 bp):
AACTATTCGAAAGTTTTCATTTAAGTAACTG
Found at i:7195973 original size:23 final size:23
Alignment explanation
Indices: 7195923--7195973 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
7195913 AAATAAATAT
7195923 ATAAAAATACATAAATATTTTCAA
1 ATAAAAATACATAAATATTTT-AA
*
7195947 A-AAATATACA-ATAA-ATTTTAA
1 ATAAAAATACATA-AATATTTTAA
7195968 ATAAAA
1 ATAAAA
7195974 GATGGTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
21 3 0.13
22 9 0.39
23 10 0.43
24 1 0.04
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (23 bp):
ATAAAAATACATAAATATTTTAA
Found at i:7199859 original size:16 final size:16
Alignment explanation
Indices: 7199838--7199871 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7199828 CCTTTCAAAT
*
7199838 TTGAATTAATTTTGAG
1 TTGAATCAATTTTGAG
7199854 TTGAATCAATTTTGAG
1 TTGAATCAATTTTGAG
7199870 TT
1 TT
7199872 TAAATGGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.50
Consensus pattern (16 bp):
TTGAATCAATTTTGAG
Found at i:7202247 original size:43 final size:43
Alignment explanation
Indices: 7202151--7202330 Score: 218
Period size: 43 Copynumber: 4.2 Consensus size: 43
7202141 AAAAAAACGT
* ** ***
7202151 CGCTAAAAGCCATGACTTTTAGCGGCGTTTG-TAAAAAAGCGC
1 CGCTAAAAGTCATGGTTTTTAGCGGCGTTTGTTGGGAAAGCGC
* * **
7202193 AGCTAATAGTCATGGTTTTTAGCGATGTTTGTTGGGAAAGCGC
1 CGCTAAAAGTCATGGTTTTTAGCGGCGTTTGTTGGGAAAGCGC
* *
7202236 CTCTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAGCGC
1 CGCTAAAAGTCATGGTTTTTAGCGGCGTTTGTTGGGAAAGCGC
* *
7202279 CGCTAAAAGTTATGGTTTTTAGCGGCGTTTGTTGGGAAAGTGC
1 CGCTAAAAGTCATGGTTTTTAGCGGCGTTTGTTGGGAAAGCGC
*
7202322 CTCTAAAAG
1 CGCTAAAAG
7202331 CTAATTTTGA
Statistics
Matches: 116, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 24 0.21
43 92 0.79
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
CGCTAAAAGTCATGGTTTTTAGCGGCGTTTGTTGGGAAAGCGC
Found at i:7202259 original size:85 final size:86
Alignment explanation
Indices: 7202153--7202331 Score: 252
Period size: 86 Copynumber: 2.1 Consensus size: 86
7202143 AAAAACGTCG
*
7202153 CTAAAAGCCATGACTTTTAGCGGCGTTTG-TAAAAAAGCGCAGCTAATAGTCATGGTTTTTAGCG
1 CTAAAAGCCATGACTTTTAGCGGCGTTTGTTAAAAAAGCGCAGCTAAAAGTCATGGTTTTTAGCG
*
7202217 ATGTTTGTTGGGAAAGCGCCT
66 ACGTTTGTTGGGAAAGCGCCT
* * *** * *
7202238 CTAAAAGTCATGGCTTTTAGCGGCGTTTGTTGGGAAAGCGCCGCTAAAAGTTATGGTTTTTAGCG
1 CTAAAAGCCATGACTTTTAGCGGCGTTTGTTAAAAAAGCGCAGCTAAAAGTCATGGTTTTTAGCG
* *
7202303 GCGTTTGTTGGGAAAGTGCCT
66 ACGTTTGTTGGGAAAGCGCCT
7202324 CTAAAAGC
1 CTAAAAGC
7202332 TAATTTTGAC
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 27 0.33
86 54 0.67
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (86 bp):
CTAAAAGCCATGACTTTTAGCGGCGTTTGTTAAAAAAGCGCAGCTAAAAGTCATGGTTTTTAGCG
ACGTTTGTTGGGAAAGCGCCT
Found at i:7202423 original size:31 final size:31
Alignment explanation
Indices: 7202388--7202469 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
7202378 ATTCCTGCAT
* * *
7202388 TAAAATCCAACCAAATATAACACATATAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* * *
7202419 TAAAATGCAGCCAAAAACAACAAATTTAGCA
1 TAAAATCCAACCAAAAACAACAAATATAGCA
* *
7202450 TAAAAATACAACAAAAAACA
1 T-AAAATCCAACCAAAAACA
7202470 TTAATTCTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 26 0.63
32 15 0.37
ACGTcount: A:0.60, C:0.20, G:0.05, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAGCA
Found at i:7202726 original size:21 final size:21
Alignment explanation
Indices: 7202701--7202755 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
7202691 TTTGCTGCCA
*
7202701 TCGCTGCTGCCTCTGCCTTCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
7202722 TCGCTACTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
7202743 TCTCTGTTGCCTC
1 TCGCTGCTGCCTC
7202756 CGCTCTAAGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.47, G:0.18, T:0.33
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:7203195 original size:13 final size:14
Alignment explanation
Indices: 7203170--7203198 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7203160 TGATGAATTG
7203170 AATTAAACAATTAT
1 AATTAAACAATTAT
7203184 AATTAAAC-ATTAT
1 AATTAAACAATTAT
7203197 AA
1 AA
7203199 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:7207746 original size:18 final size:18
Alignment explanation
Indices: 7207723--7207759 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7207713 TATAGAACTT
7207723 CGCCGCTTCTTCATTTGC
1 CGCCGCTTCTTCATTTGC
7207741 CGCCGCTTCTTCATTTGC
1 CGCCGCTTCTTCATTTGC
7207759 C
1 C
7207760 TCCTCATCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.05, C:0.41, G:0.16, T:0.38
Consensus pattern (18 bp):
CGCCGCTTCTTCATTTGC
Found at i:7208374 original size:27 final size:27
Alignment explanation
Indices: 7208344--7208483 Score: 171
Period size: 27 Copynumber: 5.1 Consensus size: 27
7208334 GCTTAGCAAG
7208344 TTATGTAAGTTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
*
7208371 TTATGTAAGCTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
*
7208398 TTATGTAAGCTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
*
7208425 TTATG-ATA-TATATT-TATGTATTATTTAAGT
1 TTATGTA-AGT-TATTATATG-A-TATAT-A-T
7208455 TT-TGTAAGTTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
7208481 TTA
1 TTA
7208484 ACATTAAGAT
Statistics
Matches: 99, Mismatches: 4, Indels: 20
0.80 0.03 0.16
Matches are distributed among these distances:
26 8 0.08
27 65 0.66
28 8 0.08
29 9 0.09
30 9 0.09
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.52
Consensus pattern (27 bp):
TTATGTAAGTTATTATATGATATATAT
Found at i:7208384 original size:13 final size:14
Alignment explanation
Indices: 7208345--7208416 Score: 57
Period size: 14 Copynumber: 5.3 Consensus size: 14
7208335 CTTAGCAAGT
*
7208345 TATGTAAGTTATTA
1 TATGTAAGCTATTA
7208359 TATGATATA--TATT-
1 TATG-TA-AGCTATTA
7208372 TATGTAAGCTATTA
1 TATGTAAGCTATTA
7208386 TATGATATA--TATT-
1 TATG-TA-AGCTATTA
7208399 TATGTAAGCTATTA
1 TATGTAAGCTATTA
7208413 TATG
1 TATG
7208417 ATATATATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 20
0.71 0.00 0.29
Matches are distributed among these distances:
11 2 0.04
12 4 0.08
13 16 0.33
14 20 0.42
15 4 0.08
16 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.49
Consensus pattern (14 bp):
TATGTAAGCTATTA
Found at i:7208429 original size:13 final size:13
Alignment explanation
Indices: 7208354--7208451 Score: 91
Period size: 13 Copynumber: 7.5 Consensus size: 13
7208344 TTATGTAAGT
7208354 TATTATATGATATA
1 TATT-TATGATATA
7208368 TATTTATG-TA-A
1 TATTTATGATATA
7208379 GCTATTATATGATATA
1 --TATT-TATGATATA
7208395 TATTTATG-TA-A
1 TATTTATGATATA
7208406 GCTATTATATGATATA
1 --TATT-TATGATATA
7208422 TATTTATGATATA
1 TATTTATGATATA
7208435 TATTTATG-TAT-
1 TATTTATGATATA
7208446 TATTTA
1 TATTTA
7208452 AGTTTTGTAA
Statistics
Matches: 74, Mismatches: 0, Indels: 23
0.76 0.00 0.24
Matches are distributed among these distances:
11 8 0.11
12 7 0.09
13 33 0.45
14 20 0.27
15 4 0.05
16 2 0.03
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (13 bp):
TATTTATGATATA
Found at i:7209246 original size:88 final size:88
Alignment explanation
Indices: 7209065--7209255 Score: 222
Period size: 88 Copynumber: 2.2 Consensus size: 88
7209055 GGGCTTAATT
* ** * * * * *
7209065 TTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGA
1 TTTTTTTGAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
* * * **
7209130 AAAAAATAGGGGTTTAATTACTT
66 AAAAAAAAGGAGCTTAATTACAA
*
7209153 TTTTTTTTAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
1 TTTTTTTGAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
*
7209218 AAAAGAACAAGGAGCTTAGTTA-AA
66 AAAA-AA-AAGGAGCTTAATTACAA
7209242 TTTTTTTGAAAAAA
1 TTTTTTTGAAAAAA
7209256 ATTAAGGGTT
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
88 60 0.71
89 15 0.18
90 10 0.12
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (88 bp):
TTTTTTTGAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATAA
AAAAAAAAGGAGCTTAATTACAA
Found at i:7209632 original size:5 final size:5
Alignment explanation
Indices: 7209606--7209663 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
7209596 ATGTGTTAAA
* *
7209606 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
7209655 ATATT ATAT
1 ATATT ATAT
7209664 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:7209642 original size:10 final size:9
Alignment explanation
Indices: 7209607--7209664 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
7209597 TGTGTTAAAA
7209607 TATATATAT
1 TATATATAT
*
7209616 TAAAT-TAT
1 TATATATAT
7209624 TAT-TATAT
1 TATATATAT
7209632 TATAGTATAT
1 TATA-TATAT
7209642 TATAT-TA-
1 TATATATAT
7209649 TATATTATAT
1 TATA-TATAT
7209659 TATATA
1 TATATA
7209665 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:7209654 original size:12 final size:12
Alignment explanation
Indices: 7209609--7209664 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
7209599 TGTTAAAATA
*
7209609 TATATATTAAAT
1 TATATATTATAT
7209621 TAT-TATTATATT
1 TATATATTATA-T
7209633 ATAGTATATTATAT
1 -TA-TATATTATAT
7209647 TATATATTATAT
1 TATATATTATAT
7209659 TATATA
1 TATATA
7209665 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:7210038 original size:18 final size:19
Alignment explanation
Indices: 7210015--7210053 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
7210005 ATATATAGAT
7210015 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
7210033 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
7210052 AT
1 AT
7210054 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:7210570 original size:18 final size:19
Alignment explanation
Indices: 7210549--7210589 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7210539 AATGAAATGA
7210549 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
7210567 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
7210586 GAAA
1 GAAA
7210590 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:7213380 original size:41 final size:42
Alignment explanation
Indices: 7213324--7213591 Score: 225
Period size: 41 Copynumber: 6.5 Consensus size: 42
7213314 GCAAAAATTG
* * * *
7213324 TAAAACACATAGCAATAGCGGCG-TTTTACCAAAAAAGGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTAGCAAAAAACGCCGC
* *
7213366 TAAAAACAGAGCAATAACGGCG-TTTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGCAAAAAACGCCGC
* *
7213407 GAAAAACAGAG-AATTAGCGGCGCTTTTGGC--AAAACGCCGC
1 TAAAAACAGAGCAA-TAGCGGCGCTTTTAGCAAAAAACGCCGC
* *
7213447 TAAAAACCAGAGCATTAGCGGCGCTTTT-G-GAAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAAACGCCGC
* * *
7213488 TAAAAACCAGAGCATTAGCTGCGCTTTTGGC--AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAAACGCCGC
* * * * *
7213529 TAAAAACCAGAGTATTAGCGGCGCTATTGGC--AAAATGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTAGCAAAAAACGCCGC
* *
7213570 TAAAAATTAGAGCATTAGCGGC
1 TAAAAA-CAGAGCAATAGCGGC
7213592 CTAAAAGTCA
Statistics
Matches: 198, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
40 18 0.09
41 168 0.85
42 12 0.06
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (42 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTAGCAAAAAACGCCGC
Found at i:7213458 original size:82 final size:82
Alignment explanation
Indices: 7213356--7213591 Score: 262
Period size: 82 Copynumber: 2.9 Consensus size: 82
7213346 GTTTTACCAA
* *
7213356 AAAAGGCCACTAAAAA-CAGAGCAATAACGGCG-TTTTAGTAAAAAACGCCGCGAAAAA-CAGAG
1 AAAACGCCGCTAAAAACCAGAGCAATAACGGCGCTTTT-G-AAAAAACGCCGCGAAAAACCAGAG
7213418 AATTAGCGGCGCTTTTGGC
64 AATTAGCGGCGCTTTTGGC
* * * * *
7213437 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAAACCAGAGCA
1 AAAACGCCGCTAAAAACCAGAGCAATAACGGCGCTTTTGAAAAAACGCCGCGAAAAACCAGAGAA
*
7213502 TTAGCTGCGCTTTTGGC
66 TTAGCGGCGCTTTTGGC
* * * * ** * * ** *
7213519 AAAACGCCGCTAAAAACCAGAGTATTAGCGGCGCTATTGGCAAAATGCCGCTAAAAATTAGAGCA
1 AAAACGCCGCTAAAAACCAGAGCAATAACGGCGCTTTTGAAAAAACGCCGCGAAAAACCAGAGAA
7213584 TTAGCGGC
66 TTAGCGGC
7213592 CTAAAAGTCA
Statistics
Matches: 137, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
81 30 0.22
82 103 0.75
83 4 0.03
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.17
Consensus pattern (82 bp):
AAAACGCCGCTAAAAACCAGAGCAATAACGGCGCTTTTGAAAAAACGCCGCGAAAAACCAGAGAA
TTAGCGGCGCTTTTGGC
Found at i:7213790 original size:21 final size:21
Alignment explanation
Indices: 7213766--7213846 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
7213756 ATAGTTTATG
*
7213766 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
* *
7213787 GTTTAGGGTTTAAGATTTTTGA
1 GTTTAGGGTTTAAGATATAT-A
* *
7213809 GTTAATTGTGGTTTAAGATATATG
1 GTT--TAG-GGTTTAAGATATATA
7213833 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
7213847 GTCTAGGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 25 0.52
22 6 0.12
24 5 0.10
25 12 0.25
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.47
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:7213857 original size:46 final size:46
Alignment explanation
Indices: 7213771--7213861 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
7213761 TTATGGTTTA
* **
7213771 TGGTTTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAATTG
1 TGGTTTAAGATATATAGTTTAGGGTTTAAGATCTAGGAGTTAATTG
* *
7213817 TGGTTTAAGATATATGGTTTAGGGTTTAAGGTCTAGGAGTTAATT
1 TGGTTTAAGATATATAGTTTAGGGTTTAAGATCTAGGAGTTAATT
7213862 AATATTTGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.45
Consensus pattern (46 bp):
TGGTTTAAGATATATAGTTTAGGGTTTAAGATCTAGGAGTTAATTG
Found at i:7213948 original size:21 final size:20
Alignment explanation
Indices: 7213919--7213970 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
7213909 AGGGTTTAGG
*
7213919 GGTT-AGGGTTGGAGTTTAA
1 GGTTAAGGGTTGGAGTTAAA
*
7213938 GGTGTAAGGGTTTGGGGTTAAA
1 GGT-TAAGGG-TTGGAGTTAAA
7213960 GGTTAAGGGTT
1 GGTTAAGGGTT
7213971 TAGAATTTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 3 0.11
20 3 0.11
21 10 0.36
22 12 0.43
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.35
Consensus pattern (20 bp):
GGTTAAGGGTTGGAGTTAAA
Found at i:7213971 original size:21 final size:21
Alignment explanation
Indices: 7213919--7213971 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
7213909 AGGGTTTAGG
*
7213919 GGTT-AGGG-TTGGAGTTTAA
1 GGTTAAGGGTTTGGAGTTAAA
*
7213938 GGTGTAAGGGTTTGGGGTTAAA
1 GGT-TAAGGGTTTGGAGTTAAA
7213960 GGTTAAGGGTTT
1 GGTTAAGGGTTT
7213972 AGAATTTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 1 0.03
21 13 0.45
22 12 0.41
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (21 bp):
GGTTAAGGGTTTGGAGTTAAA
Found at i:7220980 original size:46 final size:43
Alignment explanation
Indices: 7220928--7221161 Score: 226
Period size: 46 Copynumber: 5.6 Consensus size: 43
7220918 TTTGAATACT
7220928 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG---TAGCTACACTTA
**
7220974 TCTGATCAAGAAACAAAGTGATAAGT-G--GT---TACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTAGCTACACTTA
**
7221011 TCTGATCAAGAAACAAAGTGATAA---GT-G--GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTAGCTACACTTA
*
7221048 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--T-AGCTACACTTA
** *
7221094 TCTGATCAAGTGGTAAAGTGATAAGAGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAG--TAGCTACACTTA
7221139 TCTGATCAAG-GAC-AAGTGATAAG
1 TCTGATCAAGTGACAAAGTGATAAG
7221162 AGGTCATATG
Statistics
Matches: 166, Mismatches: 10, Indels: 27
0.82 0.05 0.13
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 61 0.37
40 3 0.02
41 1 0.01
43 11 0.07
44 1 0.01
45 22 0.13
46 65 0.39
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.28
Consensus pattern (43 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGTAGCTACACTTA
Found at i:7221007 original size:37 final size:37
Alignment explanation
Indices: 7220966--7221076 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
7220956 TAGTTTTAGC
7220966 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
*
7221003 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGC
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
** *
7221040 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGT
1 TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
7221077 AGCTTCAGCT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.28
Consensus pattern (37 bp):
TACACTTATCTGATCAAGAAACAAAGTGATAAGTGGT
Found at i:7222902 original size:26 final size:27
Alignment explanation
Indices: 7222859--7222909 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
7222849 TTTCGGAATA
7222859 AAAAAATTATGTATATATAGCATTTGC
1 AAAAAATTATGTATATATAGCATTTGC
*
7222886 AAAAAATTCAT-TA-ATATAGGATTT
1 AAAAAATT-ATGTATATATAGCATTT
7222910 AATTATAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 10 0.45
27 10 0.45
28 2 0.09
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (27 bp):
AAAAAATTATGTATATATAGCATTTGC
Found at i:7222969 original size:15 final size:15
Alignment explanation
Indices: 7222945--7222977 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7222935 TTCATTGTAT
*
7222945 AATATGTTAAAATTA
1 AATATATTAAAATTA
7222960 AATATATTAAAATTA
1 AATATATTAAAATTA
7222975 AAT
1 AAT
7222978 TTACTAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
AATATATTAAAATTA
Found at i:7224134 original size:20 final size:19
Alignment explanation
Indices: 7224109--7224164 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
7224099 CTTCGGATGC
7224109 TTAGGGATTTGGGGGAAAAT
1 TTAGGGA-TTGGGGGAAAAT
*
7224129 TTAGGGATT-AGGGAAAAT
1 TTAGGGATTGGGGGAAAAT
* *
7224147 GTAGTGAATTGGGGGAAA
1 TTAG-GGATTGGGGGAAA
7224165 TCTGTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 11 0.37
19 6 0.20
20 13 0.43
ACGTcount: A:0.34, C:0.00, G:0.39, T:0.27
Consensus pattern (19 bp):
TTAGGGATTGGGGGAAAAT
Found at i:7224762 original size:14 final size:14
Alignment explanation
Indices: 7224723--7224753 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7224713 ATAAACCCTA
*
7224723 AACCCCTAACCCGT
1 AACCCATAACCCGT
7224737 AACCCATAACCCGT
1 AACCCATAACCCGT
7224751 AAC
1 AAC
7224754 TATTAACCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.45, G:0.06, T:0.13
Consensus pattern (14 bp):
AACCCATAACCCGT
Found at i:7224795 original size:7 final size:7
Alignment explanation
Indices: 7224764--7224858 Score: 59
Period size: 7 Copynumber: 13.4 Consensus size: 7
7224754 TATTAACCCC
*
7224764 TAAACCT
1 TAAACCA
7224771 TAAACCA
1 TAAACCA
**
7224778 TAATTCA
1 TAAACCA
*
7224785 TAAACCC
1 TAAACCA
*
7224792 TAAACCCC
1 TAAA-CCA
*
7224800 T-AACCC
1 TAAACCA
*
7224806 TATACCA
1 TAAACCA
7224813 TAAACCA
1 TAAACCA
7224820 TAAAACCA
1 T-AAACCA
*
7224828 TAAACCT
1 TAAACCA
*
7224835 TACA-CA
1 TAAACCA
*
7224841 TAAACCC
1 TAAACCA
7224848 TAAACCCA
1 TAAA-CCA
7224856 TAA
1 TAA
7224859 CACGTAACCT
Statistics
Matches: 68, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
6 8 0.12
7 44 0.65
8 16 0.24
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCA
Done.