Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 210 of 290
Found at i:68205028 original size:6 final size:6
Alignment explanation
Indices: 68205011--68205191 Score: 142
Period size: 6 Copynumber: 29.8 Consensus size: 6
68205001 AACCAAAATG
* * *
68205011 AGAATC AAAATC AGAATC AGTAA-C AGGATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
68205059 AGTAA-C AGGATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
68205108 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
68205156 AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
68205192 GTGAATGCAA
Statistics
Matches: 139, Mismatches: 20, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
5 9 0.06
6 117 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:68205045 original size:30 final size:30
Alignment explanation
Indices: 68205011--68205166 Score: 182
Period size: 30 Copynumber: 5.4 Consensus size: 30
68205001 AACCAAAATG
*
68205011 AGAATCAAAATCAGAATCAGTAACAGGATC
1 AGAATCAGAATCAGAATCAGTAACAGGATC
*
68205041 AGAATCAGAATCA-ATATTAGTAACAGGATC
1 AGAATCAGAATCAGA-ATCAGTAACAGGATC
*
68205071 AGAATCAGAATCAGAAT---T-A-GGTGA-C
1 AGAATCAGAATCAGAATCAGTAACAG-GATC
*
68205096 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGGATC
* * *
68205126 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGGATC
68205156 AGAATCAGAAT
1 AGAATCAGAAT
68205167 TACGTGACAG
Statistics
Matches: 110, Mismatches: 7, Indels: 18
0.81 0.05 0.13
Matches are distributed among these distances:
25 19 0.17
26 3 0.03
27 1 0.01
28 1 0.01
29 3 0.03
30 82 0.75
31 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGGATC
Found at i:68205106 original size:79 final size:79
Alignment explanation
Indices: 68205019--68205191 Score: 242
Period size: 79 Copynumber: 2.2 Consensus size: 79
68205009 TGAGAATCAA
* * *
68205019 AATCAGAATCAGTAA-CAGGATCAGAATCAGAATCA-ATATTAGTAACAGGATCAGAATCAGAAT
1 AATCAGAATCAG-AATCAGGAACAGAATCAGAATCAGA-ATCAGTAACAGGAACAGAATCAGAAT
*
68205082 CAGAATTAGGTGACAG
64 CAGAATTACGTGACAG
* ** *
68205098 AATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCA
1 AATCAGAATCAGAATCAGGAACAGAATCAGAATCAGAATCAGTAACAGGAACAGAATCAGAATCA
68205163 GAATTACGTGACAG
66 GAATTACGTGACAG
68205177 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
68205192 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 2 0.02
79 81 0.96
80 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.20
Consensus pattern (79 bp):
AATCAGAATCAGAATCAGGAACAGAATCAGAATCAGAATCAGTAACAGGAACAGAATCAGAATCA
GAATTACGTGACAG
Found at i:68205108 original size:85 final size:79
Alignment explanation
Indices: 68205011--68205191 Score: 272
Period size: 85 Copynumber: 2.2 Consensus size: 79
68205001 AACCAAAATG
* *
68205011 AGAATCAAAATCAGAATCAGTAACAGGATCAGAATCAGAATCAATATTAGTAACAGGATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGT---A--A-CAGAAT
*
68205076 CAGAATCAGAATTAGGTGAC
60 CAGAATCAGAATTACGTGAC
*
68205096 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
68205161 CAGAATTACGTGAC
66 CAGAATTACGTGAC
68205175 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
68205192 GTGAATGCAA
Statistics
Matches: 92, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
79 42 0.46
80 1 0.01
82 1 0.01
85 48 0.52
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (79 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATTACGTGAC
Found at i:68205118 original size:55 final size:54
Alignment explanation
Indices: 68205011--68205191 Score: 231
Period size: 55 Copynumber: 3.3 Consensus size: 54
68205001 AACCAAAATG
* * * *
68205011 AGAATCAAAATCAGAATCAGTAA-CAGGATCAGAATCAGAATCA-ATATTAGTAAC
1 AGAATCAGAATCAGAATCAG-AATTAGTAACAGAATCAGAATCAGA-ATTAGTAAC
* * *
68205065 AGGATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGAATTA-GTAACAGAATCAGAATCAGAATTAGTAAC
* *
68205120 AGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATTACGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAATCAGAATTA-GTAAC
68205175 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
68205192 GTGAATGCAA
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
53 2 0.02
54 41 0.37
55 67 0.60
56 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (54 bp):
AGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAATCAGAATTAGTAAC
Found at i:68205389 original size:27 final size:27
Alignment explanation
Indices: 68205333--68205390 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
68205323 GTGACATAGT
* * *
68205333 CACCAGATACAGATATTATGGCAGAGC
1 CACCAGATACAGATAATATGGCAAACC
*
68205360 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATATGGCAAACC
68205387 CACC
1 CACC
68205391 TAAGAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATATGGCAAACC
Found at i:68205595 original size:22 final size:22
Alignment explanation
Indices: 68205547--68205605 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
68205537 GTAAATACGT
*
68205547 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
68205569 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
68205591 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
68205606 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:68205772 original size:27 final size:26
Alignment explanation
Indices: 68205693--68205775 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
68205683 TCTATCGGTC
* * *
68205693 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
68205719 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
68205746 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68205773 AAC
1 AAC
68205776 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68206004 original size:27 final size:27
Alignment explanation
Indices: 68205974--68206121 Score: 109
Period size: 27 Copynumber: 5.5 Consensus size: 27
68205964 GGGGCAAAAT
68205974 GGTAA-TCTTACCCCACAAGGGTATCTC
1 GGTAATTC-TACCCCACAAGGGTATCTC
* * *
68206001 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * *
68206028 GGTATTTCTACCCTACAAGTGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * * *
68206055 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCACAAGGGTATCTC
* * * * * *
68206082 GGTAATTTTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCCACAAGGGTATCTC
*
68206109 AGTAATTCTACCC
1 GGTAATTCTACCC
68206122 TATAGGGGTA
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
27 99 0.98
28 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCCACAAGGGTATCTC
Found at i:68206021 original size:54 final size:53
Alignment explanation
Indices: 68205973--68206160 Score: 173
Period size: 54 Copynumber: 3.5 Consensus size: 53
68205963 AGGGGCAAAA
* * * *
68205973 TGGTAATCTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATT
1 TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGAATT
* * *
68206026 TCGGT-ATTTCTACCCTACAAGTGTATTTCGATAATTCTACCCTACAGGGGTATTT
1 T-GGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGG-AATT
* * ** * *
68206081 TGGTAATTTTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGG-AATT
* * * *
68206135 TAGAAATTCTA-CCTACAGGGGTATTT
1 TGGTAATTTTACCCTACAAGGGTATTT
68206161 TAGTAATTTC
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
53 17 0.15
54 88 0.79
55 7 0.06
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (53 bp):
TGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGAATT
Found at i:68206118 original size:81 final size:81
Alignment explanation
Indices: 68205982--68206169 Score: 209
Period size: 81 Copynumber: 2.3 Consensus size: 81
68205972 ATGGTAATCT
* * * * * * * *
68205982 TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAG
1 TACCCTACAGGGGTATTTTGGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAG
* *
68206047 TGTA-TTTCGATAATTC
66 GGTATTTTAGA-AATTC
* * * * *
68206063 TACCCTACAGGGGTATTTTGGTAATTTTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGG
1 TACCCTACAGGGGTATTTTGGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAG
68206128 GGTATTTTAGAAATTC
66 GGTATTTTAGAAATTC
*
68206144 TA-CCTACAGGGGTATTTTAGTAATTT
1 TACCCTACAGGGGTATTTTGGTAATTT
68206170 CACAATCAAG
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
80 23 0.26
81 62 0.69
82 5 0.06
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (81 bp):
TACCCTACAGGGGTATTTTGGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAG
GGTATTTTAGAAATTC
Found at i:68206149 original size:26 final size:27
Alignment explanation
Indices: 68206002--68206168 Score: 194
Period size: 27 Copynumber: 6.2 Consensus size: 27
68205992 GGGTATCTCG
**
68206002 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * * *
68206029 GTATTTCTACCCTACAAGTGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
*
68206055 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCTACAGGGGTATTTTA
* * * *
68206083 GTAATTTTATCCTATAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
68206110 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
68206137 GAAATTCTA-CCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
68206163 GTAATT
1 GTAATT
68206169 TCACAATCAA
Statistics
Matches: 118, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 24 0.20
27 90 0.76
28 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:68206203 original size:27 final size:27
Alignment explanation
Indices: 68206173--68206555 Score: 421
Period size: 27 Copynumber: 14.2 Consensus size: 27
68206163 GTAATTTCAC
* * * *
68206173 AATCAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
68206200 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
68206227 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * * **
68206254 AATCAAGGATAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
68206281 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
***
68206308 AATCGAGGGTAAAATAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68206335 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
68206362 ATTCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
68206389 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
68206416 AATTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
68206443 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * **
68206470 AATCGAGGGTAAAATAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
68206497 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68206524 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
68206551 AATCG
1 AATCG
68206556 GGAGTACTTT
Statistics
Matches: 303, Mismatches: 47, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.01
27 298 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:68206267 original size:81 final size:81
Alignment explanation
Indices: 68206173--68206555 Score: 466
Period size: 81 Copynumber: 4.7 Consensus size: 81
68206163 GTAATTTCAC
* * *
68206173 AATCAAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGT
* *
68206237 AAACCAGTAATTTTGTA
65 AAAACAGTAATTCTGTA
* * *
68206254 AATCAAGGATAAAATGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
* *
68206319 AAATAATAATTCTGTA
66 AAACAGTAATTCTGTA
* * * * * **
68206335 AA-CTGAGGGTAAAACGATAATTCTGTAATTCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGG
1 AATC-GAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGG
*
68206398 TAAAACGGTAATTCTGTA
64 TAAAACAGTAATTCTGTA
* * *
68206416 AATTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
* * **
68206481 AAATAGTAATTTTAAA
66 AAACAGTAATTCTGTA
* * *
68206497 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
68206556 GGAGTACTTT
Statistics
Matches: 259, Mismatches: 38, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
80 2 0.01
81 255 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:68211125 original size:28 final size:28
Alignment explanation
Indices: 68211092--68211156 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
68211082 TCAGTATACG
* * *
68211092 AAATATTGAGAATGGCATTTAGTGTGCG
1 AAATATTGAGAATGACACTTAGTGTGCA
* *
68211120 AGATATTGATAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
68211148 AAATATTGA
1 AAATATTGA
68211157 ATGATTCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:68216928 original size:27 final size:27
Alignment explanation
Indices: 68216839--68216965 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 27
68216829 GGACATTATC
** *
68216839 TGACCGTAATACCCCAATAGGCTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
**
68216866 TGACCACAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
68216893 TGACCGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * * *
68216920 TGACTGTAATGCCTCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
** *
68216947 TGATTGGAATACCCCTGTA
1 TGACCGTAATACCCCTGTA
68216966 TTGTAATATG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:68216986 original size:54 final size:54
Alignment explanation
Indices: 68216839--68216986 Score: 134
Period size: 54 Copynumber: 2.7 Consensus size: 54
68216829 GGACATTATC
* ** * * * * * *
68216839 TGACCGTAATACCCCAATAGGCTAAAATGACCACAATACCCCTGTAGGGTAAAA
1 TGACCGGAATACCCCTGTAGGGTAAAATGACAATAATGCCTCTATAGGGTAAAA
* **
68216893 TGACCGTAATACCCCTGTAGGGTAAAATGACTGTAATGCCTCTATAGGGTAAAA
1 TGACCGGAATACCCCTGTAGGGTAAAATGACAATAATGCCTCTATAGGGTAAAA
** ** * *
68216947 TGATTGGAATACCCCTGTATTGTAATATGACAATTATGCC
1 TGACCGGAATACCCCTGTAGGGTAAAATGACAATAATGCC
68216987 CTTATGTTTC
Statistics
Matches: 76, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (54 bp):
TGACCGGAATACCCCTGTAGGGTAAAATGACAATAATGCCTCTATAGGGTAAAA
Found at i:68217170 original size:27 final size:27
Alignment explanation
Indices: 68217118--68217196 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
68217108 GGAAGTACTG
* * *
68217118 TACTGGTGACTATGTCAC-ATTCACTAT
1 TACTGGTGGCTATGCCACAATT-ACTAA
*
68217145 TATTGGTGGCTATGCCACAATTACTAA
1 TACTGGTGGCTATGCCACAATTACTAA
* * *
68217172 TACTGGTGGCTTTGCTACATTTACT
1 TACTGGTGGCTATGCCACAATTACT
68217197 GTTCTGGTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 40 0.93
28 3 0.07
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTAA
Found at i:68217424 original size:33 final size:33
Alignment explanation
Indices: 68217386--68217449 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
68217376 CTAAGCCCAC
* * *
68217386 ACTGTTTCTGTATAGGGCTAAGGCCCAGACTAA
1 ACTGTTGCTGAATAGGACTAAGGCCCAGACTAA
**
68217419 ACTGTTGCTGAATAGGACTCTGGCCCAGACT
1 ACTGTTGCTGAATAGGACTAAGGCCCAGACT
68217450 GCTACTGTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (33 bp):
ACTGTTGCTGAATAGGACTAAGGCCCAGACTAA
Found at i:68219932 original size:29 final size:29
Alignment explanation
Indices: 68219893--68219971 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
68219883 CTTAATAATC
*
68219893 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68219923 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68219952 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68219972 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68225526 original size:37 final size:37
Alignment explanation
Indices: 68225476--68225554 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
68225466 TTATTACGAA
* *
68225476 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
68225513 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
68225550 GTCTT
1 GTCTT
68225555 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:68225750 original size:47 final size:47
Alignment explanation
Indices: 68225672--68226118 Score: 705
Period size: 47 Copynumber: 9.5 Consensus size: 47
68225662 CCCTTCGGGA
* * * * * * *
68225672 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68225719 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68225766 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68225813 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68225860 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68225907 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68225954 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68226003 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68226050 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68226097 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
68226119 TTGGCTGAAT
Statistics
Matches: 375, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 331 0.88
49 44 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68226026 original size:190 final size:188
Alignment explanation
Indices: 68225672--68226118 Score: 732
Period size: 190 Copynumber: 2.4 Consensus size: 188
68225662 CCCTTCGGGA
** * * * * * * * *
68225672 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68225737 TTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
68225802 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GACCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
68225860 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
68225925 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCACTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
68225990 TCGACCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 TCGACCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
68226050 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68226115 TTTC
66 TTTC
68226119 TTGGCTGAAT
Statistics
Matches: 239, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
188 88 0.37
190 151 0.63
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCACTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GACCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:68232713 original size:29 final size:29
Alignment explanation
Indices: 68232671--68232749 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
68232661 CTTAATAATC
* *
68232671 AACCACGCATACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
68232701 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
68232730 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
68232750 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:68240940 original size:27 final size:27
Alignment explanation
Indices: 68240905--68241480 Score: 139
Period size: 27 Copynumber: 21.3 Consensus size: 27
68240895 ATACCCCCAG
* *
68240905 TTGTGAAATTA-CCAAAGTACCCCCGAT
1 TTGTAAAATTACCCAAA-TACCCTCGAT
* * *
68240932 TTATAAAATTACCCAAATATCTTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
* * *
68240959 TTGTAAAATTATCGAAATACCCTCAAT
1 TTGTAAAATTACCCAAATACCCTCGAT
* **
68240986 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
*** * *
68241013 TTGTAAAATTATAGAAATGCCCTCGAC
1 TTGTAAAATTACCCAAATACCCTCGAT
* * *
68241040 TTGCAAAATT-TCCAAAGTACCATCGAT
1 TTGTAAAATTACCCAAA-TACCCTCGAT
* * ***** * *
68241067 TTCTAGAATTACTGTTTTACTCTTGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
** * * ** **
68241094 TTACAGAATTA-CTATTTTACTATCGAT
1 TTGTAAAATTACCCA-AATACCCTCGAT
* ****
68241121 TTATAAAATTACCGTTTTACCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
* * ****
68241148 TTATAGAATTACCGTTTTACCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
* * * **
68241175 TTATAGAATTA-TCATTTTACCCTCGAT
1 TTGTAAAATTACCCA-AATACCCTCGAT
** * ****
68241202 TTACAAAATTATCGTTTTACCCTCG-T
1 TTGTAAAATTACCCAAATACCCTCGAT
**
68241228 TT-TACAGAATTA-CCATTTTACCCTCGAT
1 TTGTA-A-AATTACCCA-AATACCCTCGAT
* * ** * *
68241256 TTATAAATTTACTAAAATACCCTTGGT
1 TTGTAAAATTACCCAAATACCCTCGAT
** *
68241283 TTACAAAATTACCAAAATACCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
*** ** *
68241310 CAATAAAATTACTAAAATA-CCTCTGGT
1 TTGTAAAATTACCCAAATACCCTC-GAT
* * *
68241337 TTGTAAAATTACCAAAATACCCTTGGT
1 TTGTAAAATTACCCAAATACCCTCGAT
** *
68241364 TTGTAAAATTACTAAAATACCCT-TAGT
1 TTGTAAAATTACCCAAATACCCTCGA-T
* * **
68241391 TTGTACAATTACCAAAATACCC-CTGGC
1 TTGTAAAATTACCCAAATACCCTC-GAT
*
68241418 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACCCAAATACCCTC-GAT
* * * * * *
68241445 TTGTGAAATTATCGAAATACTCTTGGT
1 TTGTAAAATTACCCAAATACCCTCGAT
68241472 TTGTAAAAT
1 TTGTAAAAT
68241481 ATCGAAATAA
Statistics
Matches: 427, Mismatches: 103, Indels: 38
0.75 0.18 0.07
Matches are distributed among these distances:
25 1 0.00
26 13 0.03
27 397 0.93
28 14 0.03
29 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (27 bp):
TTGTAAAATTACCCAAATACCCTCGAT
Found at i:68241036 original size:54 final size:54
Alignment explanation
Indices: 68240936--68241077 Score: 160
Period size: 54 Copynumber: 2.6 Consensus size: 54
68240926 CCCGATTTAT
* * * *
68240936 AAAATTACCCAAATATCTTCGATTTGTAAAATTATCGAAATACCCTCAATTTGC
1 AAAATTACCCAAATACCCTCGATTTGTAAAATTATAGAAATACCCTCAACTTGC
** * *
68240990 AAAATTACTGAAATACCCTCGATTTGTAAAATTATAGAAATGCCCTCGACTTGC
1 AAAATTACCCAAATACCCTCGATTTGTAAAATTATAGAAATACCCTCAACTTGC
* * * *
68241044 AAAATT-TCCAAAGTACCATCGATTTCTAGAATTA
1 AAAATTACCCAAA-TACCCTCGATTTGTAAAATTA
68241078 CTGTTTTACT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 3 0.04
54 70 0.96
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
AAAATTACCCAAATACCCTCGATTTGTAAAATTATAGAAATACCCTCAACTTGC
Found at i:68241119 original size:54 final size:54
Alignment explanation
Indices: 68241057--68241258 Score: 217
Period size: 54 Copynumber: 3.7 Consensus size: 54
68241047 ATTTCCAAAG
* * * *
68241057 TACCATCGATTTCTAGAATTACTGTTTTACTCTTGATTTACAGAATTACTATTT
1 TACCATCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
* * * * *
68241111 TACTATCGATTTATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCATCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
* * * * *
68241165 TACCCTCGATTTATAGAATTA-TCATTTTACCCTCGATTTACAAAATTATCGTTT
1 TACCATCGATTTATAGAATTACT-GTTTTACCCTCGATTTACAGAATTACCATTT
* * * **
68241219 TACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTA
1 TACCATCGATTTATAGAATTACTGTTTTACCCTCGATTTA
68241259 TAAATTTACT
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.43
Consensus pattern (54 bp):
TACCATCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:68241259 original size:81 final size:81
Alignment explanation
Indices: 68241057--68241269 Score: 270
Period size: 81 Copynumber: 2.6 Consensus size: 81
68241047 ATTTCCAAAG
* * * * * *
68241057 TACCATCGATTT-CTAGAATTACTGTTTTACTCTTGATTTACAGAATTACTATTTTACTATCGAT
1 TACCCTCGATTTAC-AGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGAT
*
68241121 TTATAAAATTACCGTTT
65 TTACAAAATTACCGTTT
* *
68241138 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACT-ATTTTACCATCGAT
*
68241202 TTACAAAATTATCGTTT
65 TTACAAAATTACCGTTT
* *
68241219 TACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTATA-AATTTACTA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAA-TTACTA
68241270 AAATACCCTT
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
80 3 0.03
81 111 0.97
82 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCATCGATT
TACAAAATTACCGTTT
Found at i:68241277 original size:54 final size:54
Alignment explanation
Indices: 68241127--68241386 Score: 195
Period size: 54 Copynumber: 4.8 Consensus size: 54
68241117 CGATTTATAA
* * ***** * *
68241127 AATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTCGTTTTACAG
* * **
68241181 AATTATCATTTTACCCTCGATTTACAAAATTATCGT--TTTACCCTCGTTTTACAG
1 AATTACCATTTTACCCTCGATTTATAAAATTA-C-TAAAATACCCTCGTTTTACAG
* * * *
68241235 AATTACCATTTTACCCTCGATTTATAAATTTACTAAAATACCCTTGGTTTACAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTCGTTTTACAG
*** ** *
68241289 AATTACCAAAATACCCTCGATCAATAAAATTACTAAAATACCTCTGGTTTGTA-A-
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACC-CTCGTTT-TACAG
*** * * *
68241343 AATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCT
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCT
68241387 TAGTTTGTAC
Statistics
Matches: 172, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
53 3 0.02
54 159 0.92
55 7 0.04
56 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTCGTTTTACAG
Found at i:68241277 original size:81 final size:81
Alignment explanation
Indices: 68241116--68241295 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
68241106 TATTTTACTA
* * *
68241116 TCGATTTATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAG
1 TCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
***
68241181 AATTATCATTTTACCC
66 AATTATCAAAATACCC
* *
68241197 TCGATTTACAAAATTATCGTTTTACCCTCGTTTTACAGAATTACCATTTTACCCTCGATTTATA-
1 TCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
68241261 AATT-TACTAAAATACCC
66 AATTAT-C-AAAATACCC
* *
68241278 TTGGTTTACAAAATTACC
1 TCGATTTACAAAATTACC
68241296 AAAATACCCT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 5 0.06
81 80 0.93
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAG
AATTATCAAAATACCC
Found at i:68241304 original size:81 final size:81
Alignment explanation
Indices: 68240922--68241309 Score: 212
Period size: 81 Copynumber: 4.8 Consensus size: 81
68240912 ATTACCAAAG
* * * * * * ** * * *
68240922 TACCCCCGATTTATAAAATTACCCAAATATCTTCGATTTGTAAAATTATCGAAATACCCTCAATT
1 TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* * * **
68240987 TGCAAAATTACTGA-AA
66 TACAGAATTAC-CATTT
* * * * * * * *
68241003 TACCCTCGATTTGTAAAATTAT-AGAAATGCCCTCGACTTGCAAAATTTCCAAAGTACCATCGAT
1 TACCCTCGATTTATAGAATTATCA-AAATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
**
68241067 TT-CTAGAATTACTGTTT
65 TTAC-AGAATTACCATTT
* * * *** ** * ****
68241084 TACTCTTGATTTACAGAATTA-CTATTTTACTATCGATTTATAAAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTATAGAATTATC-AAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
* *
68241148 TTATAGAATTACCGTTT
65 TTACAGAATTACCATTT
*** * **** *
68241165 TACCCTCGATTTATAGAATTATCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGTTT
1 TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
68241230 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* *
68241246 TACCCTCGATTTATA-AATT-TACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA
1 TACCCTCGATTTATAGAATTAT-C-AAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA
68241309 T
64 T
68241310 CAATAAAATT
Statistics
Matches: 235, Mismatches: 63, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
79 1 0.00
80 6 0.03
81 226 0.96
82 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TACAGAATTACCATTT
Found at i:68241320 original size:81 final size:81
Alignment explanation
Indices: 68241249--68241439 Score: 206
Period size: 81 Copynumber: 2.4 Consensus size: 81
68241239 ACCATTTTAC
* *
68241249 CCTC-GATTTATAAATTTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAA
1 CCTCTGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAA
*
68241313 TAAAATTACTAAAATA
66 TAAAATTACCAAAATA
* * ** * * **
68241329 CCTCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCT-TAGTTT
1 CCTCTGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCA
* *
68241393 GTACAATTACCAAAATA
65 ATAAAATTACCAAAATA
* ** *
68241410 CCCCTGGCTTGTAAAATTACCAAAATACCC
1 CCTCTGATTTATAAAATTACCAAAATACCC
68241440 CTGATTTGTG
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 5 0.05
81 89 0.95
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (81 bp):
CCTCTGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAA
TAAAATTACCAAAATA
Found at i:68241393 original size:54 final size:54
Alignment explanation
Indices: 68241259--68241480 Score: 257
Period size: 54 Copynumber: 4.1 Consensus size: 54
68241249 CCTCGATTTA
* ** * * ***
68241259 TAAATTTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAA
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTG
68241313 TAAAATTACTAAAATA-CCTCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTG
1 TAAAATTACTAAAATACCCT-TGGTTTGTAAAATTACCAAAATACCCTTGGTTTG
* * * *
68241367 TAAAATTACTAAAATACCCTTAGTTTGTACAATTACCAAAATACCCCTGGCTTG
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTG
* * * * * * *
68241421 TAAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAATACTCTTGGTTTG
1 TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTG
68241475 TAAAAT
1 TAAAAT
68241481 ATCGAAATAA
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 3 0.02
54 137 0.96
55 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGGTTTG
Found at i:68241602 original size:81 final size:80
Alignment explanation
Indices: 68241476--68241698 Score: 261
Period size: 81 Copynumber: 2.8 Consensus size: 80
68241466 CTTGGTTTGT
* *
68241476 AAAATATCGAAATAACCCTGTAGGGTAGAA-TAATCAAAATACCCCTGTAGGGTAGAATTACTAA
1 AAAATATCGAAAT-ACCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTACTAA
*
68241540 AATAACCC-TGTAGGGTA
64 AAT-ACCCTTATAGGGTA
* * * * *
68241557 GAATTATCGAAATACCCTTGTAAGGTAGAATTACTGAAATACCCCTGTAAGGTAGAAATACTAAA
1 AAAATATCGAAATACCC-TGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAA
68241622 ATACCCTTATAGGGTA
65 ATACCCTTATAGGGTA
* * * * * *
68241638 AAAATACCGAAATACCCCTGTAGGGTAGAATTACGGAGATACCCTTTTAGGGTAAAATTAC
1 AAAATATCGAAATA-CCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
68241699 CATTTTGCCC
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
80 8 0.07
81 105 0.88
82 6 0.05
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (80 bp):
AAAATATCGAAATACCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAA
TACCCTTATAGGGTA
Found at i:68241679 original size:27 final size:27
Alignment explanation
Indices: 68241484--68241698 Score: 218
Period size: 27 Copynumber: 8.0 Consensus size: 27
68241474 GTAAAATATC
* *
68241484 GAAATAACCCTGTAGGGTAGAA-TAAT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
68241510 CAAAATACCCCTGTAGGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
68241538 AAAATAACCCTGTAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
68241564 CGAAATACCCTTGTAAGGTAGAATTACT
1 -GAAATACCCCTGTAGGGTAGAATTACT
* *
68241592 GAAATACCCCTGTAAGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * * * *
68241619 AAAATACCCTTATAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
68241646 GAAATACCCCTGTAGGGTAGAATTACG
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
68241673 GAGATACCCTTTTAGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
68241699 CATTTTGCCC
Statistics
Matches: 159, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 154 0.97
28 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:68241680 original size:54 final size:54
Alignment explanation
Indices: 68241474--68241699 Score: 242
Period size: 54 Copynumber: 4.2 Consensus size: 54
68241464 CTCTTGGTTT
* * *
68241474 GTAAAA-TATCGAAATAACCCTGTAGGGTAGAATAATCAAAATACCCCTGTAGG
1 GTAAAATTACCGAAATAACCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGG
* ** * *
68241527 GTAGAATTACTAAAATAACCCTGTAGGGTAGAATTATCGAAATACCCTTGTAAG
1 GTAAAATTACCGAAATAACCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGG
* * * * * *
68241581 GTAGAATTACTGAAATACCCCTGTAAGGTAGAAATA-CTAAAATACCCTTATAGG
1 GTAAAATTACCGAAATAACCCTGTAGGGTAGAATTATC-AAAATACCCTTGTAGG
* * * * *
68241635 GTAAAAATACCGAAATACCCCTGTAGGGTAGAATTA-CGGAGATACCCTTTTAGG
1 GTAAAATTACCGAAATAACCCTGTAGGGTAGAATTATC-AAAATACCCTTGTAGG
68241689 GTAAAATTACC
1 GTAAAATTACC
68241700 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
53 6 0.04
54 140 0.96
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAAAATTACCGAAATAACCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGG
Found at i:68242139 original size:31 final size:31
Alignment explanation
Indices: 68242101--68242179 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
68242091 TTGCATTCAC
* *
68242101 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTCACCTAATACCG
* *
68242132 ATTCTGATTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTAATACCG
*
68242163 ATTCTGATTATGATTCT
1 ATTCTGATTTTGATTCT
68242180 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTAATACCG
Found at i:68242197 original size:18 final size:18
Alignment explanation
Indices: 68242157--68242209 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
68242147 CTGTCACCTA
* *
68242157 ATTCTGATTCTGATTATG
1 ATTCTTATTCTGATAATG
68242175 ATTC-TAGTTCTGATAATG
1 ATTCTTA-TTCTGATAATG
*
68242193 TTTCTTATTCTG-TAATG
1 ATTCTTATTCTGATAATG
68242210 GGTTAAAGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 6 0.20
18 22 0.73
19 2 0.07
ACGTcount: A:0.23, C:0.11, G:0.15, T:0.51
Consensus pattern (18 bp):
ATTCTTATTCTGATAATG
Found at i:68245617 original size:43 final size:41
Alignment explanation
Indices: 68245569--68245736 Score: 140
Period size: 43 Copynumber: 4.0 Consensus size: 41
68245559 TACAGAGATG
*
68245569 TGATTACATGTAAGACCATGTCTAGGACATTGACATTGTATT
1 TGATTACATGTAAGACCATGTCTAGGA-ATTGGCATTGTATT
** * *
68245611 ATGATTATGTGTAAGACCATGTCTGGGATATTGGCATCGTTATT
1 -TGATTACATGTAAGACCATGTCTAGGA-ATTGGCATTG-TATT
* * * * * *
68245655 CGATTTCGTGTAAGACCCTGTCTAGGATTGTGGCATTGATATG
1 TGATTACATGTAAGACCATGTCTAGGAAT-TGGCATTG-TATT
* * *
68245698 TGATAACATGTAAGACCATATCT-GGGATATGGCATTGTA
1 TGATTACATGTAAGACCATGTCTAGGAAT-TGGCATTGTA
68245737 CGAGCTTTAT
Statistics
Matches: 99, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
41 2 0.02
42 12 0.12
43 81 0.82
44 4 0.04
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (41 bp):
TGATTACATGTAAGACCATGTCTAGGAATTGGCATTGTATT
Found at i:68249531 original size:77 final size:77
Alignment explanation
Indices: 68249398--68249541 Score: 184
Period size: 77 Copynumber: 1.9 Consensus size: 77
68249388 AATGCAAGTC
* * * * *
68249398 TTAAATGATGCTAATGTATTAATGTAAAGCATTAACTAAAGACACATTCAATAAACAAGAA-ACA
1 TTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAA-AACACA
68249462 TAAGGCACATTTT
65 TAAGGCACATTTT
** *
68249475 TTAAAAGATG-TAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACAAAACACA
1 TTAAAAGATGCTA-ATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAAAACACA
68249539 TAA
65 TAA
68249542 TGAAGCAGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
76 4 0.07
77 53 0.93
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.27
Consensus pattern (77 bp):
TTAAAAGATGCTAATGTATTAATGCAAAACATTAAATAAAGACACATTCAACAAACAAAACACAT
AAGGCACATTTT
Found at i:68254787 original size:378 final size:379
Alignment explanation
Indices: 68254053--68254813 Score: 1416
Period size: 378 Copynumber: 2.0 Consensus size: 379
68254043 AGTTGATAGT
* *
68254053 AGAGTATACCTATGTGAAAACGCCTCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
1 AGAGTATACCTACGTGAAAACGCATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
*
68254118 ATAGGGAAAAGTTTCAAGAAACTCTACCCATTTTGCTTGTCGTTTGTTCAACTTATGCTGCCTCT
66 ATAGGGAAAAGTTTCAAGAAACTCTACCCATTTTGCGTGTCGTTTGTTCAACTTATGCTGCCTCT
68254183 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAATTTTTTTTGCCAAAAGTAATGTTGC
131 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAA-TTTTTTTGCCAAAAGTAATGTTGC
68254248 CATGATTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACC
195 CATGATTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACC
68254313 ACCAATCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACT
260 ACCAATCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACT
* *
68254378 GCCGCTGGTGAACCCACTGACCTTTCCTTAGGTCCGATCACTTGTGCATGAGCTA
325 GCCGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
68254433 AGAGTATACCTACGTGAAAACGCATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
1 AGAGTATACCTACGTGAAAACGCATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
68254498 ATAGGGAAAAGTTTCAAGAAACTCTACCCATTTTGCGTGTCGTTTGTTCAACTTATGCTGCCTCT
66 ATAGGGAAAAGTTTCAAGAAACTCTACCCATTTTGCGTGTCGTTTGTTCAACTTATGCTGCCTCT
*
68254563 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAA-TTTTTTGCCAAAGGTAATGTTGCC
131 TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAATTTTTTTGCCAAAAGTAATGTTGCC
*
68254627 ATGTTTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACCA
196 ATGATTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACCA
*
68254692 CCATTCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACTG
261 CCAATCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACTG
* *
68254757 CTGCTGGTGAACCCATTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
326 CCGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
68254811 AGA
1 AGA
68254814 AGTTCAAAGA
Statistics
Matches: 371, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
378 204 0.55
380 167 0.45
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (379 bp):
AGAGTATACCTACGTGAAAACGCATCGGTAATAATGTTTTCTTTACCTTGTTTGTACTTAATGAT
ATAGGGAAAAGTTTCAAGAAACTCTACCCATTTTGCGTGTCGTTTGTTCAACTTATGCTGCCTCT
TCAAATACTTCAATGACTCATGATTAGTGTGAATAACGAATTTTTTTGCCAAAAGTAATGTTGCC
ATGATTCCAAAGCTCTTACTGAGGCATATATTTCTTTTTCATAAGTTGGGTAATTCAAAGTACCA
CCAATCAACTTCTCACTAAATTACACCACAGGACATCCTTCTTGATGCGATCATGCCCAAGACTG
CCGCTGGTGAACCCACTGACCTTCCCTTAGGTCCGATCACTCGTGCATGAGCTA
Found at i:68259140 original size:49 final size:47
Alignment explanation
Indices: 68259080--68259723 Score: 1011
Period size: 47 Copynumber: 13.6 Consensus size: 47
68259070 GATAATTGTG
* *
68259080 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68259127 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68259174 ATGTGAAAGTGTATATATGTGATAAGGCCGAAT-GCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68259220 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68259269 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68259318 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68259365 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68259412 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68259459 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68259508 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68259557 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68259604 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * * *
68259651 ATGTGAAAGCGTATATATGTGACAGGGTCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68259698 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
68259724 TCCCGAAGGG
Statistics
Matches: 557, Mismatches: 35, Indels: 10
0.93 0.06 0.02
Matches are distributed among these distances:
46 23 0.04
47 349 0.63
48 21 0.04
49 164 0.29
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:68259562 original size:239 final size:239
Alignment explanation
Indices: 68259080--68259723 Score: 1150
Period size: 239 Copynumber: 2.7 Consensus size: 239
68259070 GATAATTGTG
* * *
68259080 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
*
68259145 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT-GC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
*
68259209 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTG
68259274 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68259318 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
68259383 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
68259448 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTG
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTG
68259513 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68259557 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
68259622 GTGATGAGGCCTAATGGCCGGTGTGATGAATGTGAAAGCGTATATATGTGACAGGGTCGAGTGGC
66 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
68259687 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
131 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
68259724 TCCCGAAGGG
Statistics
Matches: 392, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
237 10 0.03
238 124 0.32
239 258 0.66
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (239 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTG
AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:68265465 original size:40 final size:40
Alignment explanation
Indices: 68265388--68265562 Score: 239
Period size: 40 Copynumber: 4.4 Consensus size: 40
68265378 CAACCAAGTA
* *
68265388 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
68265427 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68265467 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
68265507 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
68265547 CCTTTGGGACTTAGCC
1 CCTTCGGGACTTAGCC
68265563 TGGTTATCAT
Statistics
Matches: 124, Mismatches: 9, Indels: 5
0.90 0.07 0.04
Matches are distributed among these distances:
39 16 0.13
40 108 0.87
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68270980 original size:43 final size:43
Alignment explanation
Indices: 68270928--68271015 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
68270918 GAAAATGGCT
68270928 TGCTTATTATGCTTAAGTTGGTTTTGCATGTTGTTAAATAAAA
1 TGCTTATTATGCTTAAGTTGGTTTTGCATGTTGTTAAATAAAA
68270971 TGCTTATTATGCTTAAGTTGGTTTTGCATGTTGTTAAATAAAA
1 TGCTTATTATGCTTAAGTTGGTTTTGCATGTTGTTAAATAAAA
68271014 TG
1 TG
68271016 TTTAATGAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.07, G:0.19, T:0.47
Consensus pattern (43 bp):
TGCTTATTATGCTTAAGTTGGTTTTGCATGTTGTTAAATAAAA
Found at i:68271172 original size:13 final size:13
Alignment explanation
Indices: 68271156--68271180 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68271146 ATATGTTTTA
68271156 TGATTGTTTTGGG
1 TGATTGTTTTGGG
68271169 TGATTGTTTTGG
1 TGATTGTTTTGG
68271181 TATGGGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.36, T:0.56
Consensus pattern (13 bp):
TGATTGTTTTGGG
Found at i:68275440 original size:49 final size:49
Alignment explanation
Indices: 68275367--68275554 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
68275357 TAGTTGAAGC
*
68275367 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
68275416 AATCTGGTACACGTAGTAGCCTGCACCTAGTACTACACATGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
68275467 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
68275516 TATCCGGTACACGTAGTAGCCTGCAATTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
68275555 CGTGACCTCA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 76 0.64
50 2 0.02
51 40 0.34
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:68275486 original size:100 final size:100
Alignment explanation
Indices: 68275372--68275559 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
68275362 GAAGCTATCT
*
68275372 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
* *
68275437 TGCACCTAGTACTACACATGTGATCACAGTTTTCG
66 TGCAACTAGTACTACACACGTGATCACAGTTTTCG
*
68275472 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
68275537 TGCAATTAGTACTACACACGTGA
66 TGCAACTAGTACTACACACGTGA
68275560 CCTCACAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
TGCAACTAGTACTACACACGTGATCACAGTTTTCG
Found at i:68280705 original size:77 final size:77
Alignment explanation
Indices: 68280565--68280707 Score: 173
Period size: 77 Copynumber: 1.9 Consensus size: 77
68280555 AATGCAAGTC
* * * * * *
68280565 TTAAATGATGCTAATGTATTAATGTAAAGCATTAACTAAAGACACATTCAATAAATAAGAAACAT
1 TTAAAAGATGCTAATGTATTAATGCAAAACATTAACTAAAGACACATTCAACAAAAAAAAAACAT
68280630 AATGCATATTTT
66 AATGCATATTTT
** *
68280642 TTAAAAGATG-TAGATGTATTAATGCAAAACATTATA-TAAAGATGCATTTAACAAAAAAAAAAC
1 TTAAAAGATGCTA-ATGTATTAATGCAAAACATTA-ACTAAAGACACATTCAACAAAAAAAAAAC
68280705 ATA
64 ATA
68280708 TAATGAAGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
76 2 0.04
77 52 0.95
78 1 0.02
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.30
Consensus pattern (77 bp):
TTAAAAGATGCTAATGTATTAATGCAAAACATTAACTAAAGACACATTCAACAAAAAAAAAACAT
AATGCATATTTT
Found at i:68284220 original size:47 final size:47
Alignment explanation
Indices: 68284022--68284467 Score: 731
Period size: 47 Copynumber: 9.6 Consensus size: 47
68284012 CCCTTCGGGA
* * * * **
68284022 CTTATCACATTTATACACTTTCA-ATCCATCACGTTGGCCA-CCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68284067 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68284114 CTCATCA-ATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68284159 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68284206 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68284253 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68284300 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68284349 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68284395 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68284442 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
68284468 CACAATTATC
Statistics
Matches: 378, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
45 34 0.09
46 119 0.31
47 178 0.47
49 47 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68284398 original size:189 final size:186
Alignment explanation
Indices: 68284022--68284467 Score: 727
Period size: 189 Copynumber: 2.4 Consensus size: 186
68284012 CCCTTCGGGA
* * * * ** * *
68284022 CTTATCACATTTATACACTTTCA-ATCCATCACGTTGGCCA-CCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68284085 TTTCACATTCATCACATCGGCCATTAGGCCTCATCAATATATACACTTTCACATTCATCACATCG
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCAATATATACACTTTCACATTCATCACATCG
68284150 GCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68284206 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
68284271 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTCAT--CA-ATATATACACTTTCACATTCATCACA
*
68284336 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
128 TCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68284395 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
68284460 ATTCACAT
66 TTTCACAT
68284468 CACAATTATC
Statistics
Matches: 244, Mismatches: 12, Indels: 7
0.93 0.05 0.03
Matches are distributed among these distances:
184 22 0.09
185 14 0.06
186 52 0.21
188 2 0.01
189 111 0.45
190 43 0.18
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (186 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCAATATATACACTTTCACATTCATCACATCG
GCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68288413 original size:16 final size:17
Alignment explanation
Indices: 68288384--68288415 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
68288374 TTATAAACAC
68288384 ATATCAATTATTTCATT
1 ATATCAATTATTTCATT
68288401 ATATCAA-TATTTCAT
1 ATATCAATTATTTCAT
68288416 ATACCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATCAATTATTTCATT
Found at i:68290377 original size:30 final size:30
Alignment explanation
Indices: 68290343--68290404 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
68290333 GTCCTTAAAT
68290343 TAAACTTTGGAAAAATTACAATTTTGCCCC
1 TAAACTTTGGAAAAATTACAATTTTGCCCC
* * * * *
68290373 TAAACTTTTGCATATTTACACTTTTGCCCC
1 TAAACTTTGGAAAAATTACAATTTTGCCCC
68290403 TA
1 TA
68290405 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
TAAACTTTGGAAAAATTACAATTTTGCCCC
Found at i:68297263 original size:42 final size:42
Alignment explanation
Indices: 68297216--68297330 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 42
68297206 GGGATCTTAC
*
68297216 ATCGATGCCATATCCTAGATATGGTCTTATACGAAA-TCTCAT
1 ATCGATGCCATATCCTAGATATGGTCTTACAC-AAATTCTCAT
* * * **
68297258 TTCGATGCCATGTCCCAGACGTGGTCTTACACAAATTCTCAT
1 ATCGATGCCATATCCTAGATATGGTCTTACACAAATTCTCAT
*
68297300 ATC-AGCGCCATATCCTAGATATGGTCTTACA
1 ATCGA-TGCCATATCCTAGATATGGTCTTACA
68297331 TGATAACACA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 4 0.07
42 55 0.93
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATCGATGCCATATCCTAGATATGGTCTTACACAAATTCTCAT
Found at i:68309333 original size:40 final size:40
Alignment explanation
Indices: 68309278--68309425 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
68309268 TATATATATA
* *
68309278 TATAACCGGGTTAAGTCCCGAAGGTATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
68309318 TATAACCGGGTTAAGTCCCGAAGGCATTCGGGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
68309358 TATAACCGGGTTAAGTACCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
68309398 TATAACCGGGTTAAGTCCTGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
68309426 TGTACTGGTT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:68309459 original size:80 final size:80
Alignment explanation
Indices: 68309295--68309461 Score: 199
Period size: 80 Copynumber: 2.1 Consensus size: 80
68309285 GGGTTAAGTC
* *
68309295 CCGAAGGTATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGGGCGGGTTATTA
1 CCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGGACGGGTTATTA
* * ** *
68309360 TAACCGGGTTAAGTA
66 CAACCGAGCCAAATA
* * * * * *
68309375 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCTGAAGGCATTTGTACTGGTTGTTA
1 CCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGGACGGGTTATTA
* *
68309440 CATCCGAGCCAAATT
66 CAACCGAGCCAAATA
68309455 CCGAAGG
1 CCGAAGG
68309462 TATTTATGTT
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTCCCGAAGGCATTCGGACGGGTTATTA
CAACCGAGCCAAATA
Found at i:68318273 original size:42 final size:42
Alignment explanation
Indices: 68318205--68318386 Score: 161
Period size: 42 Copynumber: 4.2 Consensus size: 42
68318195 GTTCCAGACG
** * *
68318205 TGGTCTTACATGGGATCTTACATCGATGCCATATCCCAGATA
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
* * * *
68318247 TGGTCTTATACGAAATCTCATTTCGATGCCATGTCCCAGACT-
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGA-TA
* * * *
68318289 TGGTCTTACATGAATTTTCATATCAACGCCATATCCCAGATA
1 TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
*
68318331 TGGTCTTACATGATAA-CACATACCGATGCCGATGCCATATCCCAGATA
1 TGGTCTTACATGA-AATCTCAT----AT--CGATGCCATATCCCAGATA
68318379 TGGTCTTA
1 TGGTCTTA
68318387 TATGGGATAT
Statistics
Matches: 110, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 80 0.73
43 2 0.02
46 2 0.02
48 25 0.23
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
TGGTCTTACATGAAATCTCATATCGATGCCATATCCCAGATA
Found at i:68318358 original size:84 final size:84
Alignment explanation
Indices: 68318191--68318360 Score: 200
Period size: 84 Copynumber: 2.0 Consensus size: 84
68318181 GATGCCAAGA
* * * * *
68318191 CCATGTTCCAGACGTGGTCTTACATGGGATCTTACATCGATGCCATATCCCAGATATGGTCTTAT
1 CCATGTCCCAGACGTGGTCTTACATGGAATCTTACATCAACGCCATATCCCAGATATGGTCTTAC
* **
68318256 ACGAAATCTCATTTCGATG
66 ACGAAATCACATACCGATG
* * *
68318275 CCATGTCCCAGACTTGGTCTTACAT-GAATTTTCATATCAACGCCATATCCCAGATATGGTCTTA
1 CCATGTCCCAGACGTGGTCTTACATGGAATCTT-ACATCAACGCCATATCCCAGATATGGTCTTA
*
68318339 CATGATAA-CACATACCGATG
65 CACGA-AATCACATACCGATG
68318359 CC
1 CC
68318361 GATGCCATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
83 5 0.07
84 65 0.90
85 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (84 bp):
CCATGTCCCAGACGTGGTCTTACATGGAATCTTACATCAACGCCATATCCCAGATATGGTCTTAC
ACGAAATCACATACCGATG
Found at i:68322902 original size:47 final size:47
Alignment explanation
Indices: 68322815--68322991 Score: 198
Period size: 47 Copynumber: 3.8 Consensus size: 47
68322805 ACGACTCTTA
68322815 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGAG
* * * ** * *
68322862 GCCGATGCATGTCTCAAACATATCTTACACTAACACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAG
* ** * *
68322908 ACCGATGCCATGTCCCAGACATGGTCTTACGTTGGCACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGAG
68322956 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
68322992 ACAAAAAATC
Statistics
Matches: 104, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
46 23 0.22
47 60 0.58
48 20 0.19
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAG
Found at i:68322959 original size:94 final size:93
Alignment explanation
Indices: 68322816--68322986 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 93
68322806 CGACTCTTAG
* *
68322816 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCTCAAAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAAAC
68322881 ATATCTTACACTAACACTCATCTCTACA
66 ATATCTTACACTAACACTCATCTCTACA
** *
68322909 CCGATGCCATGTCCCAGACATGGTCTTACGTTGGC-ACTCATAAT-GTGGCCGATGCATGTCCCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGTCCCA
* *
68322972 GACATGTCTTACACT
63 AACATATCTTACACT
68322987 GGCACACAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 6 0.09
94 45 0.66
95 17 0.25
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAAAC
ATATCTTACACTAACACTCATCTCTACA
Found at i:68347452 original size:38 final size:38
Alignment explanation
Indices: 68347409--68347570 Score: 117
Period size: 38 Copynumber: 4.0 Consensus size: 38
68347399 TTTCAAATTA
*
68347409 ACATGTACAACCGTGGCATATCCACTTATCACCACGTT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
** * **
68347447 ACATGTTTAACTGTGTTATATCCACTTAGCACCACGTTAAT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACG-T--T
* * * *
68347488 GAATCAATATATGTAACCGTGTCATATCCACTTAGCACCACATT
1 --A-C-ATGTA--CAACCGTGGCATATCCACTTAGCACCACGTT
** * *
68347532 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
68347570 A
1 A
68347571 ATGAATCAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
38 58 0.59
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 26 0.27
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (38 bp):
ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:68347514 original size:85 final size:85
Alignment explanation
Indices: 68347417--68347605 Score: 315
Period size: 85 Copynumber: 2.2 Consensus size: 85
68347407 TAACATGTAC
* * ** *
68347417 AACCGTGGCATATCCACTTATCACCACGTTACATGTTTAACTGTGTTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
68347482 GTTAATGAATCAATATATGT
66 GTTAATGAATCAATATATGT
*
68347502 AACCGTGTCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
68347567 GTTAATGAATCAATATATGT
66 GTTAATGAATCAATATATGT
*
68347587 AAACGTGGCATATCCACTT
1 AACCGTGGCATATCCACTT
68347606 TGTAACACCC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (85 bp):
AACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
GTTAATGAATCAATATATGT
Found at i:68349070 original size:40 final size:39
Alignment explanation
Indices: 68348983--68349204 Score: 281
Period size: 39 Copynumber: 5.6 Consensus size: 39
68348973 GCTACTCGTT
*
68348983 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACT-GCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
68349021 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
*
68349061 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
68349101 CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
68349140 CAAATGCCTTCGGATCTTAGTCCGGA-TTGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
68349180 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
68349205 CATCATTCAA
Statistics
Matches: 168, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
38 11 0.07
39 80 0.48
40 77 0.46
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:68349125 original size:79 final size:78
Alignment explanation
Indices: 68348983--68349204 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 78
68348973 GCTACTCGTT
* *
68348983 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTGCACAAATGCCTTCGGGACTTAGCCCGGA
68349047 TTTAGTAACTCGCA
65 TTTAGTAACTCGCA
* *
68349061 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTC-GGACTTAGTCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACT-GCACAAATGCCTTCGGGACTTAGCCCGG
*
68349125 ATTTAGTAACTCGTA
64 ATTTAGTAACTCGCA
* * *
68349140 CAAATGCCTTCGGATCTTAGTCCGGA-TTGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-T-GCACAAATGCCTTCGGGACTTAGCCCG
68349203 GA
63 GA
68349205 CATCATTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
78 26 0.20
79 85 0.67
80 16 0.13
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:68357004 original size:40 final size:39
Alignment explanation
Indices: 68356949--68357139 Score: 250
Period size: 40 Copynumber: 4.9 Consensus size: 39
68356939 CTTCGGTAAC
*
68356949 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGATT
68356989 TAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATT
68357027 TAGTAACTCGC-CAAATGCCTTCGG-CTTA--CCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATT
* *
68357062 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAGCCCGGATT
* * *
68357102 TGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGACTTAGCCCGGA
68357140 CATCATTCAA
Statistics
Matches: 138, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
35 18 0.13
36 13 0.09
37 17 0.12
38 27 0.20
39 2 0.01
40 50 0.36
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATT
Found at i:68357071 original size:73 final size:79
Alignment explanation
Indices: 68356949--68357139 Score: 261
Period size: 73 Copynumber: 2.5 Consensus size: 79
68356939 CTTCGGTAAC
68356949 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
68357014 -CTTAGCCCGGATT
66 ACTTAGCCCGGATT
68357027 TAGTAACTCGC-CAAATGCCTTC-GG-CTT-A-CCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
* *
68357087 ATCTTAGTCCGGATA
66 A-CTTAGCCCGGATT
* * * *
68357102 TGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
68357140 CATCATTCAA
Statistics
Matches: 99, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
73 32 0.32
74 1 0.01
75 19 0.19
76 11 0.11
77 17 0.17
78 14 0.14
80 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ACTTAGCCCGGATT
Found at i:68361117 original size:15 final size:15
Alignment explanation
Indices: 68361078--68361119 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
68361068 GAAGCCTAGA
68361078 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
** *
68361093 ATAAACAAATCCATG
1 ATAAGGAAATCCAAG
68361108 ATAAGGAAATCC
1 ATAAGGAAATCC
68361120 CATTTACAGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.52, C:0.17, G:0.14, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:68363462 original size:45 final size:45
Alignment explanation
Indices: 68363406--68363657 Score: 382
Period size: 45 Copynumber: 5.6 Consensus size: 45
68363396 CGATATCATT
* *
68363406 TCATTGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCATCGGCATCATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
68363451 TCATCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCATCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
68363496 TCATCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAGTATT
1 TCATCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
68363541 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCATCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
68363586 TCA-CTGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCATC-GGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
68363631 TCACCGGCATCATAGCCTGCTAGGCTC
1 TCATCGGCATCATAGCCTGCTAGGCTC
68363658 GAAGTCCGAT
Statistics
Matches: 192, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
44 4 0.02
45 187 0.97
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCATCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:68364676 original size:37 final size:37
Alignment explanation
Indices: 68364622--68364722 Score: 193
Period size: 37 Copynumber: 2.7 Consensus size: 37
68364612 GCTCAGACGA
*
68364622 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
68364659 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
68364696 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
68364723 TAGAGCTCGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:68364919 original size:47 final size:47
Alignment explanation
Indices: 68364841--68365349 Score: 838
Period size: 47 Copynumber: 10.7 Consensus size: 47
68364831 CCCTTCGGGA
* * * * * *
68364841 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68364888 CCTGTCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68364935 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68364982 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68365029 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68365076 CTTATCACATATATACACTTTCACATTCATTACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68365123 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68365170 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68365219 CTTATCACTTATATACACTTTCACATTCATCACATCGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68365266 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68365315 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
68365350 AGAATCCTAA
Statistics
Matches: 434, Mismatches: 24, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 346 0.80
49 88 0.20
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68369545 original size:26 final size:27
Alignment explanation
Indices: 68369493--68369545 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68369483 TTGAATTCTG
* *
68369493 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
68369520 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
68369546 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:68372687 original size:47 final size:47
Alignment explanation
Indices: 68372629--68372840 Score: 262
Period size: 47 Copynumber: 4.7 Consensus size: 47
68372619 TTAACATGTA
68372629 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
68372676 TAACCGTGGCATATCCATTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
68372714 TAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
68372761 TAACCATGGCATATCCACTTAGCACCATGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* *
68372809 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
68372841 CACGTATAAC
Statistics
Matches: 139, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
38 26 0.19
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 56 0.40
48 41 0.29
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:68372765 original size:85 final size:85
Alignment explanation
Indices: 68372622--68372799 Score: 302
Period size: 85 Copynumber: 2.1 Consensus size: 85
68372612 TTTCAAATTA
* *
68372622 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
*
68372687 TATCCATTTAGCACCACGTT
66 TATCCACTTAGCACCACGTT
* *
68372707 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
*
68372772 TATCCACTTAGCACCATGTT
66 TATCCACTTAGCACCACGTT
68372792 ACATGTAT
1 ACATGTAT
68372800 CAATATGTGT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATTAATGAATCAATATATGTAACCATGGCA
TATCCACTTAGCACCACGTT
Found at i:68372823 original size:48 final size:48
Alignment explanation
Indices: 68372709--68372847 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
68372699 ACCACGTTAC
* * *
68372709 ATGTTTAACCGTGGTATATCCACTTAGCACCACATTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * * *
68372756 ATATGTAACCATGGCATATCCACTTAGCACCATGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
68372804 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
68372848 AACCGTGGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 31 0.40
48 47 0.60
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:68372834 original size:133 final size:132
Alignment explanation
Indices: 68372629--68372874 Score: 384
Period size: 133 Copynumber: 1.9 Consensus size: 132
68372619 TTAACATGTA
* *
68372629 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAT
1 TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* * *
68372694 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACATTAATGAATCAATATA
66 TTAGCACCACGTTACACGTATAACCGTGGTAAATCCACTTAGCACCACATTAATGAATCAATATA
68372759 TG
131 TG
* * * * *
68372761 TAACCATGGCATATCCACTTAGCACCATGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCATGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
*
68372826 CTTAGCACCACGTTACACGTATAACCGTGGTAAATTCACTTAGCACCAC
65 CTTAGCACCACGTTACACGTATAACCGTGGTAAATCCACTTAGCACCAC
68372875 GTTTTTTCAT
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
132 30 0.29
133 72 0.71
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (132 bp):
TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTTACACGTATAACCGTGGTAAATCCACTTAGCACCACATTAATGAATCAATATA
TG
Found at i:68373847 original size:27 final size:27
Alignment explanation
Indices: 68373807--68373965 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 27
68373797 AGATGTTACA
* *
68373807 TAAAATGACTGTTTTGCCCTTGTGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* *
68373834 TGAAATGATTGTTTTTCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * * *
68373861 TAAAATAAATATTATGCCCTTATGAGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * *
68373888 TAAAATGGTTGTTTTGCCTTTATGTGG
1 TAAAATGATTGTTTTGCCCTTATGAGG
* * * *
68373915 TAAAATGAATATTTTTCCCTT-TTATGG
1 TAAAATGATTGTTTTGCCCTTATGA-GG
* * *
68373942 TAAGATGATTGTTTTACCCCTATG
1 TAAAATGATTGTTTTGCCCTTATG
68373966 TGATGTATGC
Statistics
Matches: 100, Mismatches: 30, Indels: 3
0.75 0.23 0.02
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.42
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATGAGG
Found at i:68373966 original size:54 final size:54
Alignment explanation
Indices: 68373821--68373967 Score: 161
Period size: 54 Copynumber: 2.7 Consensus size: 54
68373811 ATGACTGTTT
* * * *
68373821 TGCCCTTGTGAGGTGAAATGATTGTTTTTCCCTTATGAGGTAAAATAAATATTA
1 TGCCCTTATGAGGTAAAATGATTGTTTTACCCTTATGTGGTAAAATAAATATTA
* * * * *
68373875 TGCCCTTATGAGGTAAAATGGTTGTTTTGCCTTTATGTGGTAAAATGAATATTT
1 TGCCCTTATGAGGTAAAATGATTGTTTTACCCTTATGTGGTAAAATAAATATTA
* * * *
68373929 TTCCCTT-TTATGGTAAGATGATTGTTTTACCCCTATGTG
1 TGCCCTTATGA-GGTAAAATGATTGTTTTACCCTTATGTG
68373968 ATGTATGCTT
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 2 0.03
54 75 0.97
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (54 bp):
TGCCCTTATGAGGTAAAATGATTGTTTTACCCTTATGTGGTAAAATAAATATTA
Found at i:68381035 original size:27 final size:27
Alignment explanation
Indices: 68380993--68381105 Score: 149
Period size: 27 Copynumber: 4.2 Consensus size: 27
68380983 GAGGAAGCGT
68380993 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
* *
68381020 TCTAGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCAC-AATATCTGTA
*
68381048 TCTGGTGGCTCTGCCACAGTATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTGTA
* *
68381075 TCTGGTGACTCTGTCACAATATCTGT-
1 TCTGGTGGCTCTGCCACAATATCTGTA
68381101 TCTGG
1 TCTGG
68381106 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.06
27 56 0.73
28 16 0.21
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATATCTGTA
Found at i:68381087 original size:55 final size:53
Alignment explanation
Indices: 68380991--68381105 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 53
68380981 TGGAGGAAGC
*
68380991 GTTCTGGTGGCTCTGCCACAAATATCTGATCTAGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTGCCAC-AATATCT
* * *
68381045 GTTTCTGGTGGCTCTGCCAC-AGTATCTGTATCTGGTGACTCTGTCACAATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCTG-ATCTAGTGACTCTGCCACAATATCT
68381099 GTTCTGG
1 GTTCTGG
68381106 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 6 0.11
54 16 0.29
55 33 0.60
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTAGTGACTCTGCCACAATATCT
Found at i:68386217 original size:27 final size:27
Alignment explanation
Indices: 68386187--68386365 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
68386177 ATATTGAGTC
* *
68386187 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
68386214 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
68386241 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
68386269 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
68386296 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
68386323 CGCACACTTAGTGCAACAATAGTCAAAT
1 CGCACACTTAGTGCTAC-ATAATCAACT
68386351 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68386366 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
27 84 0.65
28 45 0.35
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:68386279 original size:55 final size:54
Alignment explanation
Indices: 68386187--68386365 Score: 207
Period size: 55 Copynumber: 3.3 Consensus size: 54
68386177 ATATTGAGTC
* * * * *
68386187 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
68386241 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
68386296 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACAATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAAC-ATAGTCAAAT
68386351 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
68386366 GTACAATTTA
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
54 38 0.36
55 67 0.64
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:68386326 original size:82 final size:82
Alignment explanation
Indices: 68386208--68386364 Score: 228
Period size: 82 Copynumber: 1.9 Consensus size: 82
68386198 TGCTATATAA
* *
68386208 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTAC-ATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACAATAGTCAAA-TCGC
68386272 ACACTTAGTGCCGCATGG
65 ACACTTAGTGCCGCATGG
* * **
68386290 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACAATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACAATAGTCAAATCGC
68386354 ACACTTAGTGC
65 ACACTTAGTGC
68386365 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 1 0.01
82 57 0.85
83 9 0.13
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACAATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:68387641 original size:13 final size:13
Alignment explanation
Indices: 68387623--68387647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68387613 GGATGAGCAT
68387623 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
68387636 TTTTTTTTCTTT
1 TTTTTTTTCTTT
68387648 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:68388677 original size:26 final size:27
Alignment explanation
Indices: 68388638--68388699 Score: 108
Period size: 26 Copynumber: 2.3 Consensus size: 27
68388628 CGGATCATAA
68388638 GAGTCTGAAGTACTTGCTAACTCAGAAG
1 GAGT-TGAAGTACTTGCTAACTCAGAAG
68388666 GAGTTGAA-TACTTGCTAACTCAGAAG
1 GAGTTGAAGTACTTGCTAACTCAGAAG
68388692 GAGTTGAA
1 GAGTTGAA
68388700 CCTTAGGCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.76
27 4 0.12
28 4 0.12
ACGTcount: A:0.34, C:0.15, G:0.26, T:0.26
Consensus pattern (27 bp):
GAGTTGAAGTACTTGCTAACTCAGAAG
Found at i:68392212 original size:27 final size:27
Alignment explanation
Indices: 68392171--68392257 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
68392161 GGAAGCGTTT
*
68392171 TGGTGGCTCTACCACAAATATCTGATC
1 TGGTGGCTCTGCCACAAATATCTGATC
68392198 TGGTGGCTCTGCCACAAATATCT-ATTTC
1 TGGTGGCTCTGCCACAAATATCTGA--TC
68392226 TGGTGGCTCTGCCAC-AATATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTG-ATC
68392253 TGGTG
1 TGGTG
68392258 ACTGTCACAA
Statistics
Matches: 55, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
26 1 0.02
27 36 0.65
28 17 0.31
29 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAAATATCTGATC
Found at i:68397855 original size:33 final size:33
Alignment explanation
Indices: 68397797--68397895 Score: 119
Period size: 33 Copynumber: 3.0 Consensus size: 33
68397787 CTAAGCCTAG
* *
68397797 ATCAGTAACAGTCTAGGCCTGAGCCCTAT-TCAGC
1 ATCAGT-ACAGTCTGGGCCTTAGCCCTATAT-AGC
* *
68397831 ATCAGTACAATCTGGGCCTTAGCCCTATATAGT
1 ATCAGTACAGTCTGGGCCTTAGCCCTATATAGC
* *
68397864 ATCAGCATAGTCTGGGCCTTAGCCCTATATAG
1 ATCAGTACAGTCTGGGCCTTAGCCCTATATAG
68397896 TAATAGTGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
33 50 0.88
34 7 0.12
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (33 bp):
ATCAGTACAGTCTGGGCCTTAGCCCTATATAGC
Found at i:68397909 original size:27 final size:29
Alignment explanation
Indices: 68397834--68397924 Score: 91
Period size: 33 Copynumber: 3.1 Consensus size: 29
68397824 ATTCAGCATC
68397834 AGTACA-A-TCTGGGCCTTAGCCCTATAT
1 AGTACATAGTCTGGGCCTTAGCCCTATAT
68397861 AGTATCAGCATAGTCTGGGCCTTAGCCCTATAT
1 AG--T-A-CATAGTCTGGGCCTTAGCCCTATAT
* * *
68397894 AGTA-ATAGTGT-GGCCTAAGCCCAATAT
1 AGTACATAGTCTGGGCCTTAGCCCTATAT
68397921 AGTA
1 AGTA
68397925 TCAGTACAGT
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
27 20 0.36
28 6 0.11
29 1 0.02
30 2 0.04
31 3 0.05
32 1 0.02
33 22 0.40
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (29 bp):
AGTACATAGTCTGGGCCTTAGCCCTATAT
Found at i:68398142 original size:27 final size:26
Alignment explanation
Indices: 68398086--68398162 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
68398076 CTGCCAAAAT
* * *
68398086 AGTAAGTGTGGCAAAGCCACCAGTATC
1 AGTAA-TGTGGCATAGCCACCAGCAAC
68398113 AGTAATTGTGGCATAGCCACCAGCAAC
1 AGTAA-TGTGGCATAGCCACCAGCAAC
* *
68398140 AGTGAATGTGACATAGTCACCAG
1 AGT-AATGTGGCATAGCCACCAG
68398163 TACTGTATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 41 0.95
28 2 0.05
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
AGTAATGTGGCATAGCCACCAGCAAC
Found at i:68398369 original size:27 final size:27
Alignment explanation
Indices: 68398305--68398356 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
68398295 GGCCATAATC
* *
68398305 GTCATTTTACCATACAGAGGTATTACA
1 GTCATTTTACCATACAAAGGCATTACA
*
68398332 GTCATTTTACCCTACAAAGGCATTA
1 GTCATTTTACCATACAAAGGCATTA
68398357 TGGTTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCATACAAAGGCATTACA
Found at i:68403641 original size:13 final size:13
Alignment explanation
Indices: 68403623--68403647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68403613 TCCGAGATAG
68403623 AAAAATATTTTTT
1 AAAAATATTTTTT
68403636 AAAAATATTTTT
1 AAAAATATTTTT
68403648 GGTGTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAAATATTTTTT
Found at i:68404886 original size:43 final size:43
Alignment explanation
Indices: 68404808--68404927 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 43
68404798 ATAGGATTTA
*
68404808 CGATATGTGATTGCGTGTAAGACCATGTCTAGGAC-ATCGACAT
1 CGATATGTGATTACGTGTAAGACCATGTCTAGGACAAT-GACAT
* * * *
68404851 CGTATATGTGATT-CGTGTAAGACCCTGTTTGGGACAATGGCAT
1 CG-ATATGTGATTACGTGTAAGACCATGTCTAGGACAATGACAT
* *
68404894 CGATATGTGATTACATGTAAGACCACGTCTAGGA
1 CGATATGTGATTACGTGTAAGACCATGTCTAGGA
68404928 TGTTGGCATT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 10 0.15
43 43 0.66
44 12 0.18
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCATGTCTAGGACAATGACAT
Found at i:68408706 original size:13 final size:13
Alignment explanation
Indices: 68408683--68408716 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
68408673 AAACATATTA
68408683 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
68408697 TAAAATTTTGTGT
1 TAAAATTTTGTGT
68408710 TAGAAAT
1 TA-AAAT
68408717 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:68415456 original size:40 final size:40
Alignment explanation
Indices: 68415408--68415613 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
68415398 GGACTAAGAT
* *
68415408 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68415448 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
68415488 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
68415528 GCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
68415568 CCGAAGGCATTTGTGTGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
68415607 CCGAAGG
1 CCGAAGG
68415614 TACTTGGGTT
Statistics
Matches: 157, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 15 0.10
40 142 0.90
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:68421851 original size:38 final size:38
Alignment explanation
Indices: 68421808--68422098 Score: 150
Period size: 38 Copynumber: 6.9 Consensus size: 38
68421798 TTTCAAATTA
*
68421808 ACATGTACAACCGTGGCATATCCACTTATCACCACGTT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
** *
68421846 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACG-T--T
* * * *
68421887 GAATCAATATATGTAACCGTGTCATATCCACTTAGCACCACATT
1 --A-C-ATGTA--CAACCGTGGCATATCCACTTAGCACCACGTT
** * *
68421931 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTACAACCGTGGCATATCCACTTAGCACCACG-T--T
* * **
68421972 GAATCAATATATGTAAATGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--CAACCGTGGCATATCCACTTAGCACCACGTT
*
68422016 ACATGTATCAATATGTGTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTA-C---------AACCGTGGCATATCCACTTAGCACCACGTT
* * *
68422064 ACACGTATAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTACAACCGTGGCATATCCACTTAGCACCAC
68422099 ATTTTTTCAT
Statistics
Matches: 197, Mismatches: 29, Indels: 54
0.70 0.10 0.19
Matches are distributed among these distances:
38 84 0.43
39 2 0.01
40 7 0.04
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 2 0.01
47 51 0.26
48 33 0.17
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (38 bp):
ACATGTACAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:68421914 original size:85 final size:85
Alignment explanation
Indices: 68421816--68422021 Score: 358
Period size: 85 Copynumber: 2.4 Consensus size: 85
68421806 TAACATGTAC
* *
68421816 AACCGTGGCATATCCACTTATCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCAC
68421881 GTTAATGAATCAATATATGT
66 GTTAATGAATCAATATATGT
* *
68421901 AACCGTGTCATATCCACTTAGCACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCAC
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCAC
68421966 GTTAATGAATCAATATATGT
66 GTTAATGAATCAATATATGT
**
68421986 AAATGTGGCATATCCACTTAGCACCACGTTACATGT
1 AACCGTGGCATATCCACTTAGCACCACGTTACATGT
68422022 ATCAATATGT
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
AACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCAC
GTTAATGAATCAATATATGT
Found at i:68421922 original size:47 final size:47
Alignment explanation
Indices: 68421853--68422064 Score: 264
Period size: 47 Copynumber: 4.7 Consensus size: 47
68421843 GTTACATGTT
68421853 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
68421900 TAACCGT-GTCATATCCACTTAGCACCAC----AT-TA-C-ATGT-T-
1 TAACCGTGGT-ATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
68421938 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
** * * *
68421985 TAAATGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
68422033 TAACCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGTATATCCACTTAGCACCACGTTA
68422065 CACGTATAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
38 24 0.17
39 3 0.02
40 3 0.02
41 1 0.01
42 3 0.02
43 3 0.02
44 1 0.01
45 3 0.02
46 3 0.02
47 53 0.38
48 42 0.30
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (47 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:68422047 original size:48 final size:48
Alignment explanation
Indices: 68421933--68422071 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
68421923 ACCACATTAC
* * *
68421933 ATGTTTAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* ** *
68421980 ATATGTAAATGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
*
68422028 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
68422072 AACCGTGGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
47 31 0.39
48 48 0.61
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:68422051 original size:133 final size:132
Alignment explanation
Indices: 68421858--68422098 Score: 394
Period size: 133 Copynumber: 1.8 Consensus size: 132
68421848 ATGTTTAACC
*
68421858 GTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGTCATATCCACTTAGC
1 GTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGTCATATCCACTTAGC
* *
68421923 ACCACATTACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAA
66 ACCACATTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAA
68421988 AT
131 AT
* *
68421990 GTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAACCGTGGT-ATATCCACTTA
1 GTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGT-GTCATATCCACTTA
* *
68422054 GCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCAC
64 GCACCACATTACACGTATAACCATGGTATATCCACTTAGCACCAC
68422099 ATTTTTTCAT
Statistics
Matches: 100, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
132 26 0.26
133 72 0.72
134 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (132 bp):
GTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGTCATATCCACTTAGC
ACCACATTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAA
AT
Found at i:68424372 original size:15 final size:15
Alignment explanation
Indices: 68424349--68424390 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
68424339 GAAGCTCAGA
68424349 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
* *
68424364 ATAAAGAAATCCATG
1 ATAAGGAAATCCAAG
68424379 ATAAGGAAATCC
1 ATAAGGAAATCC
68424391 CATTTACAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:68429222 original size:40 final size:40
Alignment explanation
Indices: 68429083--68429207 Score: 155
Period size: 40 Copynumber: 3.1 Consensus size: 40
68429073 TTGAATGATG
* * * * *
68429083 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAA
**
68429123 TCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
68429163 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
68429203 TCCGG
1 TCCGG
68429208 GTTAAGTCCC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
40 68 0.92
41 6 0.08
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
Found at i:68429242 original size:34 final size:34
Alignment explanation
Indices: 68429192--68429256 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
68429182 GCATTTGTGT
*
68429192 GAGTTACTAAATCCGGGTTAAGTCCCGAAGGTAC
1 GAGTTACTAAATCCGGGCTAAGTCCCGAAGGTAC
*
68429226 GAGTTACTATAA-CCGGGCTATGTCCCGAAGG
1 GAGTTACTA-AATCCGGGCTAAGTCCCGAAGG
68429257 CATTTGAACG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (34 bp):
GAGTTACTAAATCCGGGCTAAGTCCCGAAGGTAC
Found at i:68429280 original size:74 final size:73
Alignment explanation
Indices: 68429148--68429299 Score: 175
Period size: 74 Copynumber: 2.1 Consensus size: 73
68429138 GAAGGCATTT
***
68429148 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAA
1 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAA
*
68429213 GTCCCGAAG
65 ATCCCGAAG
* * *
68429222 GTACGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTT
1 GTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTT
*
68429284 AAATTCCGAAG
63 AAATCCCGAAG
68429295 GTACG
1 GTACG
68429300 TGATTTGGGA
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
73 21 0.31
74 44 0.66
75 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (73 bp):
GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAA
TCCCGAAG
Found at i:68431322 original size:40 final size:40
Alignment explanation
Indices: 68431260--68431476 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
68431250 AAGCCAAGTA
* * * *
68431260 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
68431299 CCTTCGGGACATAGCCCGGATATAGTAACTCGTACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68431339 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68431379 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
68431419 CCTTCGGGACTTAGCCCGGGA-CTAGTCACTAGCGC-AATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
68431458 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68431477 TTATCATCCA
Statistics
Matches: 163, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 125 0.77
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68433412 original size:45 final size:45
Alignment explanation
Indices: 68433329--68433516 Score: 288
Period size: 45 Copynumber: 4.2 Consensus size: 45
68433319 GGCTGTCACA
*
68433329 TGCTAGGCTCAAAGGCCCAAATAATATCTCACCT-GCATCATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAATATCTCA-CTGGCATCATAGCC
* * * *
68433374 TACTAGGCTTAAAGGCCCGAATAGTATTTCACTGGCATCATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCC
68433419 TGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCC
* * *
68433464 TGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAGCC
1 TGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCC
68433509 TGCTAGGC
1 TGCTAGGC
68433517 CCGAAGTCCG
Statistics
Matches: 130, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
44 2 0.02
45 128 0.98
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGCTAGGCTCAAAGGCCCGAATAATATCTCACTGGCATCATAGCC
Found at i:68433482 original size:90 final size:90
Alignment explanation
Indices: 68433329--68433516 Score: 324
Period size: 90 Copynumber: 2.1 Consensus size: 90
68433319 GGCTGTCACA
*
68433329 TGCTAGGCTCAAAGGCCCAAATAATATCTCACCTGCATCATAGCCTACTAGGCTTAAAGGCCCGA
1 TGCTAGGCTCAAAGGCCCAAATAATATCTCACCTGCATCATAGCCTACTAGGCTCAAAGGCCCGA
*
68433394 ATAGTATTTCACTGGCATCATAGCC
66 ATAGTATTTCACCGGCATCATAGCC
* *
68433419 TGCTAGGCTCAAAGGCCCGAATAATATCTCA-CTGGCATCATAGCCTGCTAGGCTCAAAGGCCCG
1 TGCTAGGCTCAAAGGCCCAAATAATATCTCACCT-GCATCATAGCCTACTAGGCTCAAAGGCCCG
68433483 AATAGTATTTCACCGGCATCATAGCC
65 AATAGTATTTCACCGGCATCATAGCC
68433509 TGCTAGGC
1 TGCTAGGC
68433517 CCGAAGTCCG
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
89 2 0.02
90 91 0.98
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (90 bp):
TGCTAGGCTCAAAGGCCCAAATAATATCTCACCTGCATCATAGCCTACTAGGCTCAAAGGCCCGA
ATAGTATTTCACCGGCATCATAGCC
Found at i:68438530 original size:47 final size:47
Alignment explanation
Indices: 68438472--68438683 Score: 271
Period size: 47 Copynumber: 4.7 Consensus size: 47
68438462 TTAACATGTA
* *
68438472 TAACCGTGGCATATCCACTTAGCACTACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGTATCAATATATG
*
68438519 TAACCGTGGCATATCCACTTAGCACCACG----T-TA-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGTATCAATATATG
* *
68438557 TAACCATGGTATATCCACTTAGCACCACGTTAATGTATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGTATCAATATATG
* *
68438604 TAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGTATCAATATATG
* *
68438652 TAATCGTGGTATATCCACTTAGCACCACGTTA
1 TAACCGTGGCATATCCACTTAGCACCACGTTA
68438684 CACGTATAAC
Statistics
Matches: 144, Mismatches: 11, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
38 27 0.19
39 1 0.01
40 3 0.02
41 1 0.01
42 2 0.01
43 3 0.02
44 1 0.01
45 3 0.02
46 1 0.01
47 59 0.41
48 43 0.30
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGTATCAATATATG
Found at i:68438571 original size:38 final size:40
Alignment explanation
Indices: 68438515--68438720 Score: 177
Period size: 38 Copynumber: 4.9 Consensus size: 40
68438505 TGAATCAATA
*
68438515 TATGTAACCGTGGCATATCCACTTAGCACCACGTTACATG
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
* *
68438555 T-T-TAACCATGGTATATCCACTTAGCACCACGTTAATGTATCAATA
1 TATGTAACCGTGGTATATCCACTTAGCACCACG----T-TA-C-ATG
* *
68438600 TATGTAACCATGGCATATCCACTTAGCACCACGTTACATG
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
* *
68438640 TATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACACG
1 ------TA--TGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
*
68438688 TA--TAACCGTGGTATATTCACTTAGCACCACGTT
1 TATGTAACCGTGGTATATCCACTTAGCACCACGTT
68438721 TTTTCATTTT
Statistics
Matches: 138, Mismatches: 11, Indels: 36
0.75 0.06 0.19
Matches are distributed among these distances:
38 56 0.41
39 1 0.01
40 3 0.02
41 1 0.01
42 5 0.04
43 3 0.02
44 1 0.01
45 3 0.02
46 3 0.02
47 28 0.20
48 34 0.25
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (40 bp):
TATGTAACCGTGGTATATCCACTTAGCACCACGTTACATG
Found at i:68438608 original size:85 final size:85
Alignment explanation
Indices: 68438465--68438642 Score: 302
Period size: 85 Copynumber: 2.1 Consensus size: 85
68438455 TTTCAAATTA
* * *
68438465 ACATGTATAACCGTGGCATATCCACTTAGCACTACGTTAATGAATCAATATATGTAACCGTGGCA
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
68438530 TATCCACTTAGCACCACGTT
66 TATCCACTTAGCACCACGTT
* * *
68438550 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAATGTATCAATATATGTAACCATGGCA
1 ACATGTATAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
68438615 TATCCACTTAGCACCACGTT
66 TATCCACTTAGCACCACGTT
68438635 ACATGTAT
1 ACATGTAT
68438643 CAATATGTGT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (85 bp):
ACATGTATAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCATGGCA
TATCCACTTAGCACCACGTT
Found at i:68438666 original size:48 final size:48
Alignment explanation
Indices: 68438557--68438690 Score: 216
Period size: 48 Copynumber: 2.8 Consensus size: 48
68438547 GTTACATGTT
68438557 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGTATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
68438604 TAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
68438652 TAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
68438691 AACCGTGGTA
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 31 0.39
48 49 0.61
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (48 bp):
TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:68438677 original size:133 final size:132
Alignment explanation
Indices: 68438472--68438720 Score: 399
Period size: 133 Copynumber: 1.9 Consensus size: 132
68438462 TTAACATGTA
* *
68438472 TAACCGTGGCATATCCACTTAGCACTACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* *
68438537 TTAGCACCACGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAATGTATCAATATA
66 TTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGTATCAATATA
68438602 TG
131 TG
* * * *
68438604 TAACCATGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCATGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
* *
68438669 CTTAGCACCACGTTACACGTATAACCGTGGTATATTCACTTAGCACCACGTT
65 CTTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTT
68438721 TTTTCATTTT
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
132 30 0.28
133 76 0.72
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (132 bp):
TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAGCACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGTATCAATATA
TG
Found at i:68439690 original size:27 final size:27
Alignment explanation
Indices: 68439650--68439808 Score: 140
Period size: 27 Copynumber: 5.9 Consensus size: 27
68439640 AGATGTTACA
*
68439650 TAAAATGACTGTTTTGCCCTTGTGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
68439677 TGAAATGATTGTTTTTCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * * * *
68439704 TAAAATAAATATTCTACCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
** * *
68439731 TAAAATGGTTGTTTTGCCTTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
68439758 TAAAATGACTATTTTGCCCTT-TTATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* * *
68439785 TAAGATGACTGTTTTACCCCTATG
1 TAAAATGACTGTTTTGCCCTTATG
68439809 TGATGTATGT
Statistics
Matches: 101, Mismatches: 29, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:68439787 original size:54 final size:54
Alignment explanation
Indices: 68439650--68439778 Score: 159
Period size: 54 Copynumber: 2.4 Consensus size: 54
68439640 AGATGTTACA
* * * *
68439650 TAAAATGACTGTTTTGCCCTTGTGAGGTGAAATGATTGTTTTTCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGGTAAAATGATTGTTTTGCCCTTATGAGG
* * * * * * *
68439704 TAAAATAAATATTCTACCCTTATGAGGTAAAATGGTTGTTTTGCCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGGTAAAATGATTGTTTTGCCCTTATGAGG
68439758 TAAAATGACTATTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
68439779 TTATGGTAAG
Statistics
Matches: 60, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (54 bp):
TAAAATGACTATTTTGCCCTTATGAGGTAAAATGATTGTTTTGCCCTTATGAGG
Found at i:68440142 original size:17 final size:18
Alignment explanation
Indices: 68440110--68440149 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
68440100 GGACTTTGCA
*
68440110 TACTGTTTATTGTTACTG
1 TACTGTTTACTGTTACTG
68440128 TACTG-TTACTGTTACTG
1 TACTGTTTACTGTTACTG
*
68440145 CACTG
1 TACTG
68440150 GGCCAAGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.47
Consensus pattern (18 bp):
TACTGTTTACTGTTACTG
Found at i:68446936 original size:27 final size:28
Alignment explanation
Indices: 68446898--68447010 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 28
68446888 GAGGAAGCGT
*
68446898 TCTGGTGGCTCTACCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
68446925 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
68446953 TCTAGTGGCTCTGCCA-TAGTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
68446980 TCTGGTGACTCTGTCAC-AATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
68447006 TCTGG
1 TCTGG
68447011 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.73
28 15 0.20
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:68454758 original size:27 final size:28
Alignment explanation
Indices: 68454720--68454829 Score: 142
Period size: 27 Copynumber: 4.1 Consensus size: 28
68454710 GGAAGCATTT
68454720 TGGTGGCTCTGCCACAAATATCTG-ATC
1 TGGTGGCTCTGCCACAAATATCTGTATC
*
68454747 TGGTGGCTCTGCCACAAATATCTGTTTC
1 TGGTGGCTCTGCCACAAATATCTGTATC
*
68454775 TGGTGGCTCTACCAC-AATATCTGTATC
1 TGGTGGCTCTGCCACAAATATCTGTATC
* *
68454802 TGGT-G-ACTGTCAC-AATATCTGT-TC
1 TGGTGGCTCTGCCACAAATATCTGTATC
68454826 TGGT
1 TGGT
68454830 AGCCATGCTG
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
24 6 0.08
25 14 0.18
26 1 0.01
27 39 0.51
28 16 0.21
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATATCTGTATC
Found at i:68454804 original size:55 final size:51
Alignment explanation
Indices: 68454720--68454829 Score: 141
Period size: 55 Copynumber: 2.1 Consensus size: 51
68454710 GGAAGCATTT
* *
68454720 TGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGTTTC
1 TGGTGGCTCTACCACAAATATCTGATCTGGT-G-ACTGCCAC-AATATCTG-TTC
*
68454775 TGGTGGCTCTACCAC-AATATCTGTATCTGGTGACTGTCACAATATCTGTTC
1 TGGTGGCTCTACCACAAATATCTG-ATCTGGTGACTGCCACAATATCTGTTC
68454826 TGGT
1 TGGT
68454830 AGCCATGCTG
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
51 7 0.14
52 8 0.16
53 6 0.12
54 9 0.18
55 21 0.41
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (51 bp):
TGGTGGCTCTACCACAAATATCTGATCTGGTGACTGCCACAATATCTGTTC
Found at i:68460404 original size:33 final size:33
Alignment explanation
Indices: 68460352--68460489 Score: 146
Period size: 33 Copynumber: 4.3 Consensus size: 33
68460342 CTAAGCCTAG
* * *
68460352 ATCAGTAACAGTTTAGGCCTGAGCCCTAT-TCAGT
1 ATCAGT-ACAGTCTGGGCCTTAGCCCTATAT-AGT
68460386 ATCAGTACAGTCTGGGCCTTAGCCCTATATAGT
1 ATCAGTACAGTCTGGGCCTTAGCCCTATATAGT
*
68460419 ATCAGCACAGTCTGGGCCTTAGCCCTATATAGT
1 ATCAGTACAGTCTGGGCCTTAGCCCTATATAGT
* * *
68460452 A--A-T--AGTGT-GGCCTAAGCCCAATATAGT
1 ATCAGTACAGTCTGGGCCTTAGCCCTATATAGT
68460479 ATCAGTACAGT
1 ATCAGTACAGT
68460490 GTAATGCAGT
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
27 18 0.20
28 4 0.04
29 1 0.01
30 1 0.01
31 1 0.01
32 3 0.03
33 55 0.61
34 7 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (33 bp):
ATCAGTACAGTCTGGGCCTTAGCCCTATATAGT
Found at i:68460697 original size:27 final size:26
Alignment explanation
Indices: 68460638--68460717 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 26
68460628 TAGCTGCCAA
* *
68460638 AACAGTAAGTGTGGCAAAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGC
*
68460665 ATCAGTAATTGTGGCATAGCCACCAGC
1 AACAGTAA-TGTGGCATAGCCACCAGC
* *
68460692 AACAGTGAATGTGACATAGTCACCAG
1 AACAGT-AATGTGGCATAGCCACCAG
68460718 TACTGTATTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 43 0.96
28 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGC
Found at i:68460924 original size:27 final size:27
Alignment explanation
Indices: 68460860--68460911 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
68460850 GGCCATAATC
* *
68460860 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCATACAAGGGAATTACA
*
68460887 GTCATTTTACCCTACAAGGGAATTA
1 GTCATTTTACCATACAAGGGAATTA
68460912 TGGTTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGAATTACA
Found at i:68470896 original size:13 final size:13
Alignment explanation
Indices: 68470878--68470902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68470868 TCCGAGATAG
68470878 AAAAATATTTTTT
1 AAAAATATTTTTT
68470891 AAAAATATTTTT
1 AAAAATATTTTT
68470903 GGTGTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAAATATTTTTT
Done.