Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 211 of 290
Found at i:68472191 original size:43 final size:42
Alignment explanation
Indices: 68472065--68472192 Score: 123
Period size: 43 Copynumber: 3.0 Consensus size: 42
68472055 TAGGATTTAG
* * * *
68472065 GATATGTGATTGCGTGTAAGACCATGTCTAGGACATCGACATCA
1 GATATGTGATT-CGTGTAAGACC-CGTCTGGGACATTGGCATCA
* * *
68472109 TATATGTGATTCGTGTAAGACCCTGTTTGGGACAATGGCATC-
1 GATATGTGATTCGTGTAAGACCC-GTCTGGGACATTGGCATCA
* *
68472151 GATATGTGATTACATGTAAGACCGCGTCTGGGACGTTGGCAT
1 GATATGTGATT-CGTGTAAGACC-CGTCTGGGACATTGGCAT
68472193 TGTACGATAT
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
42 10 0.14
43 48 0.70
44 11 0.16
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGATTCGTGTAAGACCCGTCTGGGACATTGGCATCA
Found at i:68479389 original size:27 final size:28
Alignment explanation
Indices: 68479337--68479478 Score: 172
Period size: 27 Copynumber: 5.3 Consensus size: 28
68479327 AGCAGAGCTG
* * *
68479337 CCAGAATAGATA-ATGTGACAG-AGCCA
1 CCAGAACAGATATTTGTGGCAGTAGCCA
68479363 CCAGATACAGATA-TTGTGGCAGT-GCCA
1 CCAGA-ACAGATATTTGTGGCAGTAGCCA
68479390 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATATTTGTGGCAGTAGCCA
* *
68479417 CCAAAATAGATATTTGTGGCA-TAGCCA
1 CCAGAACAGATATTTGTGGCAGTAGCCA
*
68479444 CCAGAACAGATATTTGTAGCA-TAGCCA
1 CCAGAACAGATATTTGTGGCAGTAGCCA
68479471 CCAGAACA
1 CCAGAACA
68479479 CTTCCTCCAT
Statistics
Matches: 103, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
26 14 0.14
27 89 0.86
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (28 bp):
CCAGAACAGATATTTGTGGCAGTAGCCA
Found at i:68480140 original size:22 final size:22
Alignment explanation
Indices: 68480112--68480157 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
68480102 CCAACCGTGT
*
68480112 TAGCCTCCAAAGCCTTTTGCTG
1 TAGCCTCCAAAGCCCTTTGCTG
68480134 TAGCCTCCAAAGCCCTTTGCTG
1 TAGCCTCCAAAGCCCTTTGCTG
68480156 TA
1 TA
68480158 CGTCCCCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.20, C:0.33, G:0.17, T:0.30
Consensus pattern (22 bp):
TAGCCTCCAAAGCCCTTTGCTG
Found at i:68483226 original size:30 final size:29
Alignment explanation
Indices: 68483143--68483226 Score: 70
Period size: 30 Copynumber: 3.0 Consensus size: 29
68483133 TTGAGATGAT
* *
68483143 TGTTTGAATTGGATTGAATATTGAT-T-A
1 TGTTTGAATTGAAATGAATATTGATGTGA
* *
68483170 T-ATTGAATTGATTTATGAATA-T-ATGTGAA
1 TGTTTGAATTGA--AATGAATATTGATGTG-A
68483199 TGTTTGAATTGAAATGAATATTGATGTG
1 TGTTTGAATTGAAATGAATATTGATGTG
68483227 GAAATTGAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
26 10 0.23
27 3 0.07
28 13 0.30
29 3 0.07
30 14 0.33
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.45
Consensus pattern (29 bp):
TGTTTGAATTGAAATGAATATTGATGTGA
Found at i:68483341 original size:21 final size:19
Alignment explanation
Indices: 68483305--68483343 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
68483295 AAAAATATGA
*
68483305 TTATTGTGAAATTGAATAT
1 TTATTGTGAAAGTGAATAT
68483324 TTATTAGTGAAAAGTGAATA
1 TTATT-GTG-AAAGTGAATA
68483344 GAATTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 3 0.18
21 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (19 bp):
TTATTGTGAAAGTGAATAT
Found at i:68483394 original size:16 final size:16
Alignment explanation
Indices: 68483373--68483406 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68483363 ATATATAGTT
68483373 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
68483389 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
68483405 AA
1 AA
68483407 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:68483660 original size:53 final size:53
Alignment explanation
Indices: 68483586--68483689 Score: 163
Period size: 53 Copynumber: 2.0 Consensus size: 53
68483576 TACTGTTACC
* *
68483586 GTTACTGTTACTGTTTCGGATTTATTTCGATGAGGTACTCTGTGTACCGTATT
1 GTTACTGTTACAGTTTCGGATTTATTCCGATGAGGTACTCTGTGTACCGTATT
* * *
68483639 GTTAGTGTTACAGTTTTGGATTTGTTCCGATGAGGTACTCTGTGTACCGTA
1 GTTACTGTTACAGTTTCGGATTTATTCCGATGAGGTACTCTGTGTACCGTA
68483690 CTTCTACTGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.25, T:0.43
Consensus pattern (53 bp):
GTTACTGTTACAGTTTCGGATTTATTCCGATGAGGTACTCTGTGTACCGTATT
Found at i:68483872 original size:18 final size:18
Alignment explanation
Indices: 68483848--68483911 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
68483838 AATTGATTGA
68483848 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
68483866 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTAT
* * *
68483884 TACCGAATAACTAACTAT
1 TACTGAATAACTGATTAT
*
68483902 TACTAAATAA
1 TACTGAATAA
68483912 ATAATTGTTC
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:68483911 original size:36 final size:36
Alignment explanation
Indices: 68483837--68483920 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
68483827 CTGAATAATT
* * * * * *
68483837 TAATTGATTGATACTGAATAACTGATTATTATTGAA
1 TAATTGATTGTTACCGAATAACTAACTATTACTAAA
68483873 TAATTGATTGTTACCGAATAACTAACTATTACTAAA
1 TAATTGATTGTTACCGAATAACTAACTATTACTAAA
* *
68483909 TAAATAATTGTT
1 TAATTGATTGTT
68483921 CAGATTGACT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (36 bp):
TAATTGATTGTTACCGAATAACTAACTATTACTAAA
Found at i:68487276 original size:30 final size:29
Alignment explanation
Indices: 68487231--68487291 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
68487221 TGAAATGAAG
68487231 AAGATGAATCATTTTGCTTAAGTTATTTT
1 AAGATGAATCATTTTGCTTAAGTTATTTT
*
68487260 AAGATGAATGCATTTTGTTTAAGTTATTTT
1 AAGATGAAT-CATTTTGCTTAAGTTATTTT
68487290 AA
1 AA
68487292 CTTTCATTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.48
Consensus pattern (29 bp):
AAGATGAATCATTTTGCTTAAGTTATTTT
Found at i:68490129 original size:30 final size:29
Alignment explanation
Indices: 68490077--68490140 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
68490067 TAAGTAGCCG
*
68490077 AAGCTAGTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
68490106 AAGCTAGTTTAAATCGCAGACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
68490136 AAGCT
1 AAGCT
68490141 TACGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:68497349 original size:29 final size:30
Alignment explanation
Indices: 68497317--68497380 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
68497307 CGAGTAGTCG
68497317 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
68497346 AAGCTAGTTTAAATCGCACTCTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
68497376 AAGCT
1 AAGCT
68497381 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:68511030 original size:18 final size:18
Alignment explanation
Indices: 68510981--68511030 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
68510971 CATTGAAGTG
* *
68510981 TTTCAGCGAAAACCGTGT
1 TTTCATCGAAAACTGTGT
68510999 TTTCATCGAAAACTGTGT
1 TTTCATCGAAAACTGTGT
*
68511017 TTTCATTGAAAACT
1 TTTCATCGAAAACT
68511031 CTTCTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (18 bp):
TTTCATCGAAAACTGTGT
Found at i:68515921 original size:70 final size:70
Alignment explanation
Indices: 68515815--68515949 Score: 243
Period size: 70 Copynumber: 1.9 Consensus size: 70
68515805 ACCATGATAA
* *
68515815 ACATGTGTAATGAGGTCCTGCATGTGTTGAAGAAAGGATTTAGTCTAGACAAGTAATCTGTTGAT
1 ACATGTGTAATGAGGTCCTACATGTGTTGAAGAAAGGATTTAGCCTAGACAAGTAATCTGTTGAT
68515880 GATTG
66 GATTG
*
68515885 ACATGTGTAATGAGGTCCTACATGTGTTGAAGAAAGGATTTAGCCTAGACAGGTAATCTGTTGAT
1 ACATGTGTAATGAGGTCCTACATGTGTTGAAGAAAGGATTTAGCCTAGACAAGTAATCTGTTGAT
68515950 CTCATTTACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (70 bp):
ACATGTGTAATGAGGTCCTACATGTGTTGAAGAAAGGATTTAGCCTAGACAAGTAATCTGTTGAT
GATTG
Found at i:68521581 original size:40 final size:40
Alignment explanation
Indices: 68521522--68521833 Score: 378
Period size: 40 Copynumber: 7.8 Consensus size: 40
68521512 CATTTGAATG
68521522 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* * * * *
68521562 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
* *
68521602 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* * * * *
68521642 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
* * *
68521682 TTATCCGGGCTAAGATCCGAAGGCATTTGTGCGAATTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* * * * *
68521722 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
* *
68521762 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
68521802 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
68521834 TTGTGGTTAT
Statistics
Matches: 224, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.03
40 212 0.95
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:68521656 original size:80 final size:80
Alignment explanation
Indices: 68521523--68521834 Score: 561
Period size: 80 Copynumber: 3.9 Consensus size: 80
68521513 ATTTGAATGA
*
68521523 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68521588 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
68521603 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68521668 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
*
68521683 TATCCGGGCTAAGATCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68521748 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
* * * * *
68521763 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68521828 TTGTGCT
66 TTGTGCT
68521835 TGTGGTTATA
Statistics
Matches: 224, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 224 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
TTGTGCTAGTGATTT
Found at i:68529684 original size:40 final size:40
Alignment explanation
Indices: 68529586--68529907 Score: 323
Period size: 40 Copynumber: 8.3 Consensus size: 40
68529576 CATTTGAATG
* *
68529586 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
68529626 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
68529665 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-TAGTGATT
* * *
68529705 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
68529745 TTATCCGGGCTAAGA-CCGAAGGCATTTG-GCGAATTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-TAGTGATT
* *
68529783 ATA-CC---CGAAGACCCGAAGGCAATTGTGCTAGTG---
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
*
68529816 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
68529856 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
68529896 ATATCC-GGCTAA
1 ATATCCGGGCTAA
68529908 ATTCCGAAGA
Statistics
Matches: 232, Mismatches: 35, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
33 3 0.01
34 7 0.03
35 15 0.06
36 2 0.01
37 25 0.11
38 9 0.04
39 57 0.25
40 111 0.48
41 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:68529751 original size:80 final size:80
Alignment explanation
Indices: 68529587--68529907 Score: 484
Period size: 79 Copynumber: 4.2 Consensus size: 80
68529577 ATTTGAATGA
*
68529587 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-CCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68529651 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
68529666 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68529731 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
68529746 TATCCGGGCTAAGA-CCGAAGGCATTTG-GCGAATTGCTATACCC--G--AAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
68529805 TTGTGCTAGTGA---
66 TTGTGCTAGTGATTT
* * * * *
68529817 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
* * *
68529882 TTGTGCTTGTGGTTA
66 TTGTGCTAGTGATTT
68529897 TATCC-GGCTAA
1 TATCCGGGCTAA
68529908 ATTCCGAAGA
Statistics
Matches: 225, Mismatches: 7, Indels: 20
0.89 0.03 0.08
Matches are distributed among these distances:
71 14 0.06
72 13 0.06
73 13 0.06
74 27 0.12
75 1 0.00
76 1 0.00
77 24 0.11
78 16 0.07
79 60 0.27
80 56 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
TTGTGCTAGTGATTT
Found at i:68529870 original size:151 final size:156
Alignment explanation
Indices: 68529586--68529907 Score: 485
Period size: 151 Copynumber: 2.1 Consensus size: 156
68529576 CATTTGAATG
* *
68529586 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCGCG-TAAGACCCGAAGGCAA
* *
68529651 TTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTT
65 TTGTGCTAGTGA--TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATACCCGGGCT
68529716 AAGACCCGAAGGCAATTGTGCTAGTGATT
128 AAGACCCGAAGGCAATTGTGCTAGTGATT
*
68529745 TTATCCGGGCTAAGA-CCGAAGGCATTTG-GCGAATTGCTATACC-CG-AAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCGCGTAAGACCCGAAGGCAAT
* *
68529806 TGTGCTAGTGA-TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAG
66 TGTGCTAGTGATTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATACCCGGGCTAAG
* * *
68529870 ACCCGAAGGCATTTGTGCTTGTGGTT
131 ACCCGAAGGCAATTGTGCTAGTGATT
68529896 ATATCC-GGCTAA
1 ATATCCGGGCTAA
68529908 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
150 6 0.04
151 77 0.51
154 27 0.18
156 1 0.01
157 14 0.09
158 13 0.09
159 14 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (156 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCGCGTAAGACCCGAAGGCAAT
TGTGCTAGTGATTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATACCCGGGCTAAG
ACCCGAAGGCAATTGTGCTAGTGATT
Found at i:68535504 original size:46 final size:46
Alignment explanation
Indices: 68535454--68535626 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
68535444 TTGAGCATCC
*
68535454 GAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
68535500 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * *
68535547 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
68535593 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68535627 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:68535607 original size:93 final size:93
Alignment explanation
Indices: 68535448--68535619 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
68535438 GGATGGTTGA
* *
68535448 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
68535513 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
68535541 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
68535606 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
68535620 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:68543050 original size:46 final size:46
Alignment explanation
Indices: 68543000--68543175 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
68542990 TGGTTGAGCA
68543000 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
68543046 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
68543091 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
68543139 CCCGAGCTCGTTGAGTTGAGTCCAATTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68543176 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68548095 original size:68 final size:67
Alignment explanation
Indices: 68548023--68548172 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
68548013 CATCATGTGT
* * * *
68548023 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
68548085 ATGTAG
62 ATGTAG
** * *
68548091 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
68548156 AG
66 AG
68548158 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
68548173 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:68548128 original size:64 final size:64
Alignment explanation
Indices: 68548047--68548230 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
68548037 AGACATTATG
* *
68548047 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
68548111 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
68548176 AA
63 AA
* * * *
68548178 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
68548231 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:68552281 original size:13 final size:13
Alignment explanation
Indices: 68552263--68552289 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68552253 ATGGACAAAA
68552263 TTTAGCTTTTAAT
1 TTTAGCTTTTAAT
68552276 TTTAGCTTTTAAT
1 TTTAGCTTTTAAT
68552289 T
1 T
68552290 CATTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTAGCTTTTAAT
Found at i:68555709 original size:6 final size:6
Alignment explanation
Indices: 68555691--68555803 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
68555681 AAGAAACATT
* *
68555691 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
68555740 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCGGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
68555790 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
68555804 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.78
7 9 0.11
8 3 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:68555736 original size:25 final size:25
Alignment explanation
Indices: 68555705--68555800 Score: 106
Period size: 25 Copynumber: 3.8 Consensus size: 25
68555695 GAACTAGAAT
* *
68555705 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
68555730 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
68555755 CAGAATCAAAATCAGAATC-GGTAT
1 CAGAATCAGAATCAGAATCAGGTAA
*
68555779 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAGAATCAG
68555801 AATGTGAATG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.10
25 51 0.85
26 3 0.05
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:68555736 original size:31 final size:29
Alignment explanation
Indices: 68555700--68555803 Score: 108
Period size: 31 Copynumber: 3.6 Consensus size: 29
68555690 TATCAGAACT
* * *
68555700 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATC-G-ATCAGGTAAC
*
68555731 AGAATCAGAATCAG--T--ATCAGGTAAC
1 AGAATCAAAATCAGAATCGATCAGGTAAC
68555756 AGAATCAAAATCAGAATCGGTATCAGGTAAC
1 AGAATCAAAATCAGAATC-G-ATCAGGTAAC
68555787 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
68555804 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
25 21 0.33
27 1 0.02
29 1 0.02
31 41 0.64
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.19
Consensus pattern (29 bp):
AGAATCAAAATCAGAATCGATCAGGTAAC
Found at i:68556233 original size:27 final size:27
Alignment explanation
Indices: 68556203--68556392 Score: 204
Period size: 27 Copynumber: 7.0 Consensus size: 27
68556193 GGGGCAAAAT
* * *
68556203 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
68556230 GGTAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
68556257 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
68556284 AGTAATTCTACCTTAC-AGGAGTATTTT
1 GGTAATTCTACCCTACAAGG-GTATTTC
* * *
68556311 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
68556338 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
68556365 AGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
68556392 G
1 G
68556393 ATATTTTACA
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
26 6 0.04
27 129 0.94
28 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:68556269 original size:54 final size:54
Alignment explanation
Indices: 68556204--68556392 Score: 245
Period size: 54 Copynumber: 3.5 Consensus size: 54
68556194 GGGCAAAATG
* * * * **
68556204 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGCATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* * * *
68556258 GTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCTTACAGGAGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* * *
68556312 GTAATTCTACCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
68556366 GTAATTCTACCCTAC-AGGGTTATTTCG
1 GTAATTCTACCCTACAAGGG-TATTTCG
68556393 ATATTTTACA
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 3 0.03
54 112 0.97
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
Found at i:68556390 original size:81 final size:81
Alignment explanation
Indices: 68556231--68556383 Score: 243
Period size: 81 Copynumber: 1.9 Consensus size: 81
68556221 GGGTATCTCG
* *
68556231 GTAATTCTACCCTACAGGGGCATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
*
68556296 TTACAGGAGTATTTTA
66 CTACAGGAGTATTTTA
* * * *
68556312 GTAATTCTACCTTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACC
1 GTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
68556377 CTACAGG
66 CTACAGG
68556384 GTTATTTCGA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGCATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACC
CTACAGGAGTATTTTA
Found at i:68556441 original size:27 final size:27
Alignment explanation
Indices: 68556411--68556667 Score: 254
Period size: 27 Copynumber: 9.6 Consensus size: 27
68556401 CAAACCGAGA
* * *
68556411 GTATTTCGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* **
68556438 GTATTTTGGTAATTTTATAAGCCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
*
68556465 GTATTTTGGTAATTGTACAAA-CTAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGG
* *
68556492 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
68556519 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGG
* * **
68556546 GTATTTTAGTGATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAATCAG-GG
68556573 GTATTTTGGTAATTTTACAAATC-GAGG
1 GTATTTTGGTAATTTTACAAATCAG-GG
* * *
68556600 ATATTTGGGTAATTTTATAAATCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* * * *
68556627 GTACTTTGGTAATTTCACAACT-GGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
*
68556653 GTATTTTAGTAATTT
1 GTATTTTGGTAATTT
68556668 GGTAAACTAA
Statistics
Matches: 192, Mismatches: 32, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
26 19 0.10
27 170 0.89
28 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCAGGG
Found at i:68556518 original size:81 final size:80
Alignment explanation
Indices: 68556420--68556667 Score: 286
Period size: 81 Copynumber: 3.1 Consensus size: 80
68556410 AGTATTTCGA
* *
68556420 TAATTTCACAAATCAGGGGTATTTTGGTAATTTTATAAGCCAGGGGTATTTTGGTAATTGTACAA
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATT-TACAA
68556485 ACTAGGGGTATTTTAG
65 ACTAGGGGTATTTTAG
* * * * * **
68556501 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTGATTTTACTG
1 TAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGT-AATTTACAA
* *
68556566 A-TCGAGGGTATTTTGG
65 ACTAG-GGGTATTTTAG
* * * *
68556582 TAATTTTACAAATC-GAGGATATTTGGGTAATTTTATAAATCAGGGGTACTTTGGTAATTT-CAC
1 TAATTTTACAAATCAG-GGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTACA-
*
68556645 AACTGGGGGTATTTTAG
64 AACTAGGGGTATTTTAG
68556662 TAATTT
1 TAATTT
68556668 GGTAAACTAA
Statistics
Matches: 138, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
79 1 0.01
80 24 0.17
81 110 0.80
82 3 0.02
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (80 bp):
TAATTTTACAAATCAGGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTACAAA
CTAGGGGTATTTTAG
Found at i:68558664 original size:6 final size:6
Alignment explanation
Indices: 68558646--68558758 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
68558636 AAGAAACATT
* *
68558646 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
68558695 ATCAGT ATCAAGTA A-CAGA ATCAAA ATCAGA ATCGGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
68558745 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
68558759 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
5 6 0.07
6 64 0.78
7 9 0.11
8 3 0.04
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:68558691 original size:25 final size:25
Alignment explanation
Indices: 68558660--68558728 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
68558650 GAACTAGAAT
* * *
68558660 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAAGTAA
*
68558685 CAGAATCAGAATCAGTATCAAGTAA
1 CAGAATCAGAATCAGAATCAAGTAA
*
68558710 CAGAATCAAAATCAGAATC
1 CAGAATCAGAATCAGAATC
68558729 GGTATCAGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAAGTAA
Found at i:68558691 original size:31 final size:28
Alignment explanation
Indices: 68558655--68558758 Score: 97
Period size: 31 Copynumber: 3.6 Consensus size: 28
68558645 TATCAGAACT
* *
68558655 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATC-G-A-TAGGTAAC
* *
68558686 AGAATCAGAATCAGTATC-A-A-GTAAC
1 AGAATCAAAATCAGAATCGATAGGTAAC
68558711 AGAATCAAAATCAGAATCGGTATCAGGTAAC
1 AGAATCAAAATCAGAATC-G-AT-AGGTAAC
68558742 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
68558759 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
25 20 0.32
26 1 0.02
28 2 0.03
30 1 0.02
31 39 0.62
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (28 bp):
AGAATCAAAATCAGAATCGATAGGTAAC
Found at i:68560675 original size:29 final size:29
Alignment explanation
Indices: 68560640--68560713 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
68560630 GTTGTGAGAT
* *
68560640 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
68560669 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
68560698 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68560714 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:68571172 original size:27 final size:27
Alignment explanation
Indices: 68571012--68571175 Score: 170
Period size: 27 Copynumber: 6.1 Consensus size: 27
68571002 GGCAAAATGG
* * * *
68571012 TAATTTTACCCCACAAGGGTATCTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
68571038 GTAATTCTATCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
* * * *
68571066 TATTTCTACCCTATAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
68571093 TAATTCTACCTTACAGGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
*
68571119 GTAATTCTACCTTACAGGGGTATTTCGA
1 -TAATTCTACCCTACAGGGGTATTTCGA
* *
68571147 TTATTCTACCCTACAGGGTTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
68571174 TA
1 TA
68571176 TTTTACAAAC
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 112 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:68571221 original size:27 final size:27
Alignment explanation
Indices: 68571191--68571426 Score: 267
Period size: 27 Copynumber: 8.7 Consensus size: 27
68571181 CAAACCGAGA
* * *
68571191 GTATTTCGATAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
**
68571218 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* *
68571245 GTATTTTGGTAATTGTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* * *
68571272 GTATTTTAGTAATTTTACAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCAGGG
*
68571299 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* ** *
68571326 GTATTTTAGTAATTTTACTGATCAAGG
1 GTATTTTGGTAATTTTACAAATCAGGG
68571353 GTATTTTGGTAATTTTACAAATC-GAGG
1 GTATTTTGGTAATTTTACAAATCAG-GG
* * * *
68571380 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* *
68571407 GTACTTTGGTAATTTCACAA
1 GTATTTTGGTAATTTTACAA
68571427 CTGGGGGTAT
Statistics
Matches: 178, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 177 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCAGGG
Found at i:68571258 original size:54 final size:54
Alignment explanation
Indices: 68571175--68571447 Score: 282
Period size: 54 Copynumber: 5.1 Consensus size: 54
68571165 TTATTTCGAT
* * * * * *
68571175 ATTTTACAAACCGAGAGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
* *
68571229 ATTTTACAAGCCAGGGGTATTTTGGTAATTGT-ACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATT-TCACAAACCAGGGGTATTTTAGTA
*
68571283 ATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
** * * * * **
68571337 ATTTTACTGATCAAGGGTATTTTGGTAATTTTACAAATC-GAGGATATTTGGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAG-GGGTATTTTAGTA
* * ** * ** *
68571391 ATTTTATAAATCGGGGGTACTTTGGTAATTTCAC-AACTGGGGGTATTTCAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
68571444 ATTT
1 ATTT
68571448 GGTAAACTAA
Statistics
Matches: 186, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
53 18 0.10
54 167 0.90
55 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (54 bp):
ATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
Found at i:68583300 original size:27 final size:27
Alignment explanation
Indices: 68583270--68583371 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
68583260 ATTACCAAAG
* *
68583270 TACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
68583297 TACCCTC--TTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
68583322 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
68583349 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
68583372 AAAATACCCT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
25 22 0.33
26 1 0.02
27 43 0.65
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:68583379 original size:27 final size:27
Alignment explanation
Indices: 68583349--68583569 Score: 148
Period size: 27 Copynumber: 8.2 Consensus size: 27
68583339 ATTACTGTTT
*
68583349 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
68583376 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
68583403 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* * ** * *
68583430 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
68583456 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* *** *
68583483 TACCACTAG-TTTGTGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
* ** *
68583510 TACCCTCAATTTGTAAAATTCCCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
68583537 TACCC-CTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
68583564 TACCCT
1 TACCCT
68583570 TGACTTTCTA
Statistics
Matches: 153, Mismatches: 31, Indels: 19
0.75 0.15 0.09
Matches are distributed among these distances:
26 25 0.16
27 127 0.83
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:68583407 original size:54 final size:53
Alignment explanation
Indices: 68583349--68583614 Score: 207
Period size: 54 Copynumber: 4.9 Consensus size: 53
68583339 ATTACTGTTT
* *
68583349 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCC-TGGTTTACAAAATTACCAAAA
* * ** * *
68583403 TACCCTCGA-TCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTGGTTTACAAAATTACCAAAA
* * * *** *
68583456 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACC-CTGGTTTACAAAATTACCAAAA
* * * *
68583510 TACCCTCAATTTGTAAAATTCCCAAAATACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCAAAATA-CCCTGGTTTACAAAATTACCA-AAA
* * * *
68583564 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTAC
1 TACCCTCGA-TTTAT-AAAATTACCA-AAATACC-CTGGTTTACAAAATTAC
68583615 TGGAATACCC
Statistics
Matches: 168, Mismatches: 32, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
52 2 0.01
53 42 0.25
54 88 0.52
55 11 0.07
56 25 0.15
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTGGTTTACAAAATTACCAAAA
Found at i:68583477 original size:80 final size:79
Alignment explanation
Indices: 68583363--68583569 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 79
68583353 CTCGATTTAC
* *
68583363 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCT-GTTTACAAAATTACCAAAATACCCTAG-TCAGTAAAATTACCAA
**
68583428 AATACCCT-GGTCTGT
64 AATACCCTCAATCTGT
* ** ** * *
68583443 AAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGA
1 AAAATTACTAAAATACCCCT-GTTTACAAAATTACCAAAATACC-CTAGTCAGTAAAATTACCAA
*
68583508 AATACCCTCAATTTGT
64 AATACCCTCAATCTGT
* *
68583524 AAAATTCCCAAAATACCCCTGATTTACAAAATTA-CAGAAATACCCT
1 AAAATTACTAAAATACCCCTG-TTTACAAAATTACCA-AAATACCCT
68583570 TGACTTTCTA
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
80 64 0.60
81 42 0.40
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (79 bp):
AAAATTACTAAAATACCCCTGTTTACAAAATTACCAAAATACCCTAGTCAGTAAAATTACCAAAA
TACCCTCAATCTGT
Found at i:68583727 original size:27 final size:27
Alignment explanation
Indices: 68583696--68583754 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
68583686 GTAAAAACAT
*
68583696 CGTAAATCCCCTGCAGGGTAAAGTGAC
1 CGTAAAGCCCCTGCAGGGTAAAGTGAC
* * *
68583723 TGTAAAGCCCTTGTAGGGTAAAGTGAC
1 CGTAAAGCCCCTGCAGGGTAAAGTGAC
68583750 CGTAA
1 CGTAA
68583755 TACCCCTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
CGTAAAGCCCCTGCAGGGTAAAGTGAC
Found at i:68583769 original size:27 final size:27
Alignment explanation
Indices: 68583696--68583776 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
68583686 GTAAAAACAT
* **
68583696 CGTAAATCCCCTGCAGGGTAAAGTGAC
1 CGTAAAGCCCCTATAGGGTAAAGTGAC
* * *
68583723 TGTAAAGCCCTTGTAGGGTAAAGTGAC
1 CGTAAAGCCCCTATAGGGTAAAGTGAC
* *
68583750 CGTAATA-CCCCTATATGGTAAAATGAC
1 CGTAA-AGCCCCTATAGGGTAAAGTGAC
68583777 GAATATGCCC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
CGTAAAGCCCCTATAGGGTAAAGTGAC
Found at i:68584665 original size:24 final size:24
Alignment explanation
Indices: 68584585--68584665 Score: 103
Period size: 24 Copynumber: 3.4 Consensus size: 24
68584575 AGGAAGTGCT
* *
68584585 AAAAGGGCTAT-CCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
68584608 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
68584633 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
68584656 AAAAGAGGCT
1 AAAAG-GGCT
68584666 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 9 0.17
24 32 0.62
25 11 0.21
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:68584907 original size:31 final size:31
Alignment explanation
Indices: 68584871--68585047 Score: 293
Period size: 31 Copynumber: 5.7 Consensus size: 31
68584861 CGTTTACAGT
*
68584871 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68584902 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68584933 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
68584964 TAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68584995 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68585026 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
68585048 CCAAGACTAA
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.04
31 133 0.96
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68588496 original size:40 final size:40
Alignment explanation
Indices: 68588449--68588651 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
68588439 CGAGATTTAA
* * * * *
68588449 CCGGATATAGCT-ACTCACTCGAATACCTTCGGAACATAGC
1 CCGGATATAG-TAACTCACACAAATGCCTTCGGGACTTAGC
68588489 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
*
68588529 CCGGA-ACTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCACACAAATGCCTTCGGGACTTAGC
* * *
68588569 CCGGATATGGTAACTCGCAAAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* **
68588608 CTGGA-ATTAGCCACT-AGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGC
68588648 CCGG
1 CCGG
68588652 TTATCAATCC
Statistics
Matches: 142, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 108 0.76
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
Found at i:68588648 original size:79 final size:80
Alignment explanation
Indices: 68588474--68588651 Score: 259
Period size: 79 Copynumber: 2.2 Consensus size: 80
68588464 CACTCGAATA
* * *
68588474 CCTTCGGAACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATGCCTTCGGGACTTAGCCCGGAACTAG
* *
68588539 TAACTCGCACAAATG
66 CAACTAGCACAAATG
* * * *
68588554 CCTTCGGGACTTAGCCCGGATATGGTAACTCGCAAAAATGCCTTCGGG-CTTAGCCTGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATGCCTTCGGGACTTAGCCCGGAACTAG
*
68588618 CCACTAGCACAAATG
66 CAACTAGCACAAATG
68588633 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68588652 TTATCAATCC
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 45 0.51
80 43 0.49
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACAAAAATGCCTTCGGGACTTAGCCCGGAACTAG
CAACTAGCACAAATG
Found at i:68592247 original size:40 final size:39
Alignment explanation
Indices: 68592189--68592365 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 39
68592179 AAGTATCTTC
68592189 GGGACTTAG-CCGGATATAGCAACTCA-CACAAATGCCTTT
1 GGGACTTAGCCCGGATATAGC-ACT-AGCACAAATGCCTTT
* *
68592228 GGGTCTTAGCCCGGATATAGTCACTAGCATAAATGCCTTT
1 GGGACTTAGCCCGGATATAG-CACTAGCACAAATGCCTTT
* *
68592268 GGGATTTAGCCCGGATATAATCACTAGCACAAATGCCTTT
1 GGGACTTAGCCCGGATAT-AGCACTAGCACAAATGCCTTT
* * * * *
68592308 TGGACTTAGCCCGGGTATAGTAACTTGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAG-CACTAGCACAAATGCCTTT
68592348 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
68592366 CATCCGAATA
Statistics
Matches: 118, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.08
40 106 0.90
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAGCACTAGCACAAATGCCTTT
Found at i:68592342 original size:80 final size:80
Alignment explanation
Indices: 68592185--68592365 Score: 242
Period size: 80 Copynumber: 2.3 Consensus size: 80
68592175 ACCCAAGTAT
* *
68592185 CTTCGGGACTTAG-CCGGATAT-AGCAACTCA-CACAAATGCCTTTGGGTCTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATAATC-ACT-AGCACAAATGCCTTTGGGACTTAGCCCGGATATA
* *
68592247 GTCACTAGCATAAATGC
64 GTAACTAGCACAAATGC
* * * *
68592264 CTTTGGGATTTAGCCCGGATATAATCACTAGCACAAATGCCTTTTGGACTTAGCCCGGGTATAGT
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
*
68592329 AACTTGCACAAATGC
66 AACTAGCACAAATGC
68592344 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
68592366 CATCCGAATA
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
79 12 0.14
80 74 0.84
81 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGC
Found at i:68594939 original size:27 final size:27
Alignment explanation
Indices: 68594772--68595145 Score: 215
Period size: 27 Copynumber: 13.9 Consensus size: 27
68594762 CAATTATTGT
* *
68594772 AATACCCTCGACTTGTAAAATTACCAA
1 AATACCCTCGATTTATAAAATTACCAA
* * * * **
68594799 AGTACCCCCGATTTACATAATTACCGT
1 AATACCCTCGATTTATAAAATTACCAA
** * **
68594826 TTTACCCTCGATTTACAAAATTACCGT
1 AATACCCTCGATTTATAAAATTACCAA
** * *
68594853 TTTACCCTCGATTTATAGAATT-CCTAT
1 AATACCCTCGATTTATAAAATTACC-AA
** * * ***
68594880 TTTACCCTTGATTTATAGAATTACTGT
1 AATACCCTCGATTTATAAAATTACCAA
** * *
68594907 TTTACCCTCGATTTAAAAAATTACTAA
1 AATACCCTCGATTTATAAAATTACCAA
* *
68594934 AATACCCT-TAGTTTACAAAATTACCAA
1 AATACCCTCGA-TTTATAAAATTACCAA
*
68594961 AATACCCTCGA-TCAGTAAAATTACCAA
1 AATACCCTCGATTTA-TAAAATTACCAA
* * *
68594988 AATACCCTAG-TTTGTAAAATTACTAA
1 AATACCCTCGATTTATAAAATTACCAA
* *
68595014 AATACCC-CTAGTTTGTAAAATTACCAA
1 AATACCCTCGA-TTTATAAAATTACCAA
* *
68595041 AATACCC-CTAGTTTGTAAAATTACCAA
1 AATACCCTCGA-TTTATAAAATTACCAA
* * * *
68595068 AATACCACT-GGTTTGTGAAATTACCGA
1 AATACC-CTCGATTTATAAAATTACCAA
*
68595095 AATACCCT-GAATTTGTAAAATTACCAA
1 AATACCCTCG-ATTTATAAAATTACCAA
* *
68595122 AATACCCCTTGATTTACAAAATTA
1 AATA-CCCTCGATTTATAAAATTA
68595146 TAGAAATACC
Statistics
Matches: 287, Mismatches: 47, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
26 26 0.09
27 242 0.84
28 18 0.06
29 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
AATACCCTCGATTTATAAAATTACCAA
Found at i:68594967 original size:54 final size:54
Alignment explanation
Indices: 68594909--68595240 Score: 271
Period size: 54 Copynumber: 6.1 Consensus size: 54
68594899 ATTACTGTTT
* * **
68594909 TACCCTCGATTTAAAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *
68594963 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TAGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * *
68595016 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * * *
68595070 TACCACT-GGTTTGTGAAATTACCGAAATACCCTGAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * * *
68595124 TACCCCTTGATTTACAAAATTA-TAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TA-CCCTCGATTTATAAAATTACCA-AAATACCCTT-AGTTTGT-AAAATTACCA-AAA
* * * * ** * * *
68595181 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
68595235 CACCCT
1 TACCCT
68595241 TGTAGGGTGA
Statistics
Matches: 226, Mismatches: 38, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
52 2 0.01
53 44 0.19
54 107 0.47
55 27 0.12
56 33 0.15
57 13 0.06
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:68595026 original size:80 final size:81
Alignment explanation
Indices: 68594923--68595129 Score: 276
Period size: 80 Copynumber: 2.6 Consensus size: 81
68594913 CTCGATTTAA
* **
68594923 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
68594987 AAATACC-CTAGTTTGT
65 AAATACCACTAGTTTGT
* **
68595003 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
68595068 AATACCACTGGTTTGT
66 AATACCACTAGTTTGT
* ** *
68595084 GAAATTACCGAAATA-CCCTGAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCC
68595130 TTGATTTACA
Statistics
Matches: 113, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
79 2 0.02
80 66 0.58
81 45 0.40
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTAGTTTGT
Found at i:68595200 original size:111 final size:108
Alignment explanation
Indices: 68594918--68595239 Score: 287
Period size: 107 Copynumber: 3.0 Consensus size: 108
68594908 TTACCCTCGA
* * * * * * * *
68594918 TTTAAAAAATTACTAAAATACCCTTAGTTTAC-AAAATTACCAAAATACC-CTCGATCAGTAAAA
1 TTTACAAAATTACCAAAATACCCCTACTTT-CTAAAATTACCAAAATACCACTGGTTTA-CAAAA
* *
68594981 TTACCAAAATACCCT-AGTTTGTAAAATTACTAAAATACCCCTAG
64 TTACCGAAATACCCTGAGTTTGTAAAATTACCAAAATACCCCTAG
** * * ***
68595025 TTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATT
1 TTTACAAAATTACCAAAATACCCCTACTTTCTAAAATTACCAAAATACCACTGGTTTACAAAATT
* *
68595090 ACCGAAATACCCTGAATTTGTAAAATTACCAAAATACCCCTTG
66 ACCGAAATACCCTGAGTTTGTAAAATTACCAAAATACCCCTAG
* * * *
68595133 ATTTACAAAATTA-TAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACA
1 -TTTACAAAATTACCA-AAATACCCCT-ACTTTCT-AAAATTACCA-AAATACCACTGGTTTACA
* * * *
68595196 AAATTACTGAAATACCCTTG-GTTTGTAGATTTACCAAAACACCC
61 AAATTACCGAAATACCC-TGAGTTTGTAAAATTACCAAAATACCC
68595240 TTGTAGGGTG
Statistics
Matches: 176, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
107 61 0.35
108 31 0.18
109 19 0.11
110 6 0.03
111 57 0.32
112 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (108 bp):
TTTACAAAATTACCAAAATACCCCTACTTTCTAAAATTACCAAAATACCACTGGTTTACAAAATT
ACCGAAATACCCTGAGTTTGTAAAATTACCAAAATACCCCTAG
Found at i:68595207 original size:27 final size:27
Alignment explanation
Indices: 68595121--68595219 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 27
68595111 AAAATTACCA
*
68595121 AAATACCCCTTGATTTACAAAATTATAG
1 AAATA-CCCTTGGTTTACAAAATTATAG
*
68595149 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTG-GTTTAC--AAAATTATAG
*
68595178 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGGTTTACAAAATTA-TAG
68595205 AAATACCCTTGGTTT
1 AAATACCCTTGGTTT
68595220 GTAGATTTAC
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
27 29 0.47
28 12 0.19
29 21 0.34
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATACCCTTGGTTTACAAAATTATAG
Found at i:68595303 original size:27 final size:27
Alignment explanation
Indices: 68595273--68595364 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
68595263 ACCCCTATTA
*
68595273 GGTAAAAAGACCGTAAATCCCCTGTAG
1 GGTAAAATGACCGTAAATCCCCTGTAG
* *
68595300 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAATCCCCTGTAG
*
68595327 GGTAAAATGACCGT-AATACCCCTGTAT
1 GGTAAAATGACCGTAAAT-CCCCTGTAG
68595354 GGTAAAATGAC
1 GGTAAAATGAC
68595365 GAATATGCCC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.03
27 56 0.97
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAATCCCCTGTAG
Found at i:68595379 original size:25 final size:27
Alignment explanation
Indices: 68595260--68595364 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
68595250 AAATGACTAA
* *
68595260 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
68595287 AA-ATCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
*
68595314 AA-AGCCCCTGTAGGGTAAAATGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
68595341 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
68595365 GAATATGCCC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.01
27 66 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:68596469 original size:31 final size:31
Alignment explanation
Indices: 68596434--68596574 Score: 237
Period size: 31 Copynumber: 4.5 Consensus size: 31
68596424 CGTTTACAGT
68596434 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
68596465 AAAGGCTTCGGCCCAGAGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68596496 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68596527 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68596558 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
68596575 AACTGTTAAA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68598901 original size:26 final size:27
Alignment explanation
Indices: 68598854--68599071 Score: 92
Period size: 27 Copynumber: 8.2 Consensus size: 27
68598844 ATTATTGAAA
68598854 TACCCTCGACTTGTA-A-AATTACCAAAG
1 TACCCTCGA-TT-TACAGAATTACCAAAG
* ****
68598881 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCAAAG
****
68598907 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCAAAG
* * ***
68598934 TCCCCTCGATTTATAGAATT-CCTATTT
1 TACCCTCGATTTACAGAATTACC-AAAG
* ******
68598961 TACCCTTGATTTACAGAATTAATGTTT
1 TACCCTCGATTTACAGAATTACCAAAG
* * *
68598988 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAGAATTACCAAAG
* * *
68599015 TACCCTTGGTTTACAAAATTACCAAA-
1 TACCCTCGATTTACAGAATTACCAAAG
*
68599041 TACCCTCGATAGTA-A-AATTACCAAA-
1 TACCCTCGAT-TTACAGAATTACCAAAG
68599066 TACCCT
1 TACCCT
68599072 AGTAAAATTG
Statistics
Matches: 158, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.01
25 19 0.12
26 26 0.16
27 111 0.70
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCAAAG
Found at i:68598926 original size:27 final size:27
Alignment explanation
Indices: 68598881--68599009 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
68598871 ATTACCAAAG
*
68598881 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
68598907 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
68598934 TCCCCTCGATTTATAGAATT-CCTATTT
1 TACCCTCGATTTACAGAATTACC-GTTT
* **
68598961 TACCCTTGATTTACAGAATTAATGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
68598988 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
68599010 TAAAATACCC
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.08
27 80 0.92
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:68599019 original size:54 final size:54
Alignment explanation
Indices: 68598907--68599035 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 54
68598897 ATTACCGTTT
* * * * * * ***
68598907 TACCCTCGATTTACAGAATTACCGTTTTCCCCTCGATTTATAGAATTCCTATTT
1 TACCCTTGATTTACAGAATTAACGTTTTACCCTCGATTTACAAAATTACTAAAA
*
68598961 TACCCTTGATTTACAGAATTAATGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTAACGTTTTACCCTCGATTTACAAAATTACTAAAA
* *
68599015 TACCCTTGGTTTACAAAATTA
1 TACCCTTGATTTACAGAATTA
68599036 CCAAATACCC
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTAACGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:68599214 original size:54 final size:55
Alignment explanation
Indices: 68598990--68599309 Score: 208
Period size: 54 Copynumber: 6.0 Consensus size: 55
68598980 TAATGTTTTA
** **
68598990 CCCTCGATTTACAAAATTACTAAAATACCCTTG-GTTTACAAAATTACC-AAATA-
1 CCCT-GATTTACAAAATTACCGAAATACCCTTGAGTTTGTAAAATTACCAAAATAC
* *
68599043 CCCTCGA--TAGTAAAATTACC-AAATACCC-T-A----GTAAAATT-GCAAAATAC
1 CCCT-GATTTA-CAAAATTACCGAAATACCCTTGAGTTTGTAAAATTACCAAAATAC
** * *
68599090 CCCT-AGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATAC
1 CCCTGA-TTTACAAAATTACCGAAATACCCTTGAGTTTGTAAAATTACCAAAATAC
* * *** *
68599144 CACTGGTTTGTGAAATTACCGAAATACCC-TGAATTTGTAAAATTACCAAAATAC
1 CCCTGATTTACAAAATTACCGAAATACCCTTGAGTTTGTAAAATTACCAAAATAC
** * * *
68599198 CCCTGATTTACAAAATTATAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAATAC
1 CCCTGATTTACAAAATTACCGAAATACCCTTGAGTTTGT-AAAATTACCA-AAATAC
** * * * * *
68599254 CATTGGTTTACAAAATTACTGAAATACCCTTG-GTTTGTAGATTTACCAAAACAC
1 CCCTGATTTACAAAATTACCGAAATACCCTTGAGTTTGTAAAATTACCAAAATAC
68599308 CC
1 CC
68599310 TTGTAGGTGA
Statistics
Matches: 213, Mismatches: 34, Indels: 39
0.74 0.12 0.14
Matches are distributed among these distances:
45 2 0.01
46 11 0.05
47 14 0.07
48 9 0.04
49 2 0.01
50 1 0.00
51 10 0.05
52 8 0.04
53 16 0.08
54 87 0.41
55 13 0.06
56 40 0.19
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (55 bp):
CCCTGATTTACAAAATTACCGAAATACCCTTGAGTTTGTAAAATTACCAAAATAC
Found at i:68599286 original size:27 final size:27
Alignment explanation
Indices: 68598988--68599289 Score: 130
Period size: 27 Copynumber: 11.4 Consensus size: 27
68598978 ATTAATGTTT
* *
68598988 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*
68599015 TACCCTTGGTTTACAAAATTAC-CAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * * *
68599041 TACCC-TCG-ATAGTAAAATTAC-CAAA
1 TACCCTTGGTTTA-CAAAATTACTAAAA
* *
68599066 TACCC-TAG--T--AAAATTGC-AAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
68599087 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * ** *
68599114 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** **
68599141 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTACAAAATTACTAAAA
* ** *
68599168 TACCC-TGAATTTGTAAAATTACCAAAA
1 TACCCTTG-GTTTACAAAATTACTAAAA
* *
68599195 TACCCCTGATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
68599222 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
68599251 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
68599278 TACCCTTGGTTT
1 TACCCTTGGTTT
68599290 GTAGATTTAC
Statistics
Matches: 234, Mismatches: 25, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
21 15 0.06
22 3 0.01
24 4 0.02
25 21 0.09
26 19 0.08
27 141 0.60
28 10 0.04
29 21 0.09
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:68599380 original size:23 final size:25
Alignment explanation
Indices: 68599353--68599427 Score: 84
Period size: 23 Copynumber: 3.1 Consensus size: 25
68599343 GTAAAAAGAC
68599353 CGTAA-ACCCTGTAGGGTAAAGTGA
1 CGTAAGACCCTGTAGGGTAAAGTGA
*
68599377 -GTAAGCCCCT-TAGGGTAAAGTGA
1 CGTAAGACCCTGTAGGGTAAAGTGA
* * *
68599400 CCGTAATACCCTGTATGGTAAAATGA
1 -CGTAAGACCCTGTAGGGTAAAGTGA
68599426 CG
1 CG
68599428 AATATGCCCT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
23 17 0.40
24 4 0.10
25 10 0.24
26 11 0.26
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (25 bp):
CGTAAGACCCTGTAGGGTAAAGTGA
Found at i:68600253 original size:25 final size:24
Alignment explanation
Indices: 68600215--68600283 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 24
68600205 AGGAAGTGCT
*
68600215 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
68600239 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
68600264 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
68600284 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 20 0.48
25 22 0.52
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:68600272 original size:24 final size:24
Alignment explanation
Indices: 68600215--68600296 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
68600205 AGGAAGTGCT
* *
68600215 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
68600239 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
68600264 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
68600287 AAAAGAGGCT
1 AAAAG-GGCT
68600297 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 9 0.17
24 22 0.42
25 22 0.42
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:68600536 original size:31 final size:31
Alignment explanation
Indices: 68600501--68600639 Score: 221
Period size: 31 Copynumber: 4.5 Consensus size: 31
68600491 CGTTTACAGT
68600501 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68600532 AAAGGCTTCGG-CCAGAT-ATATGATTTATG-
1 AAAGGCTTCGGCCCAG-TGATATGATTTATGA
*
68600561 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68600592 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68600623 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
68600640 AACCGTTAAA
Statistics
Matches: 101, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
29 11 0.11
30 32 0.32
31 58 0.57
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68600568 original size:60 final size:62
Alignment explanation
Indices: 68600501--68600639 Score: 221
Period size: 60 Copynumber: 2.3 Consensus size: 62
68600491 CGTTTACAGT
68600501 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGG-CCAGAT-ATATGATTTATG-
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAG-TGATATGATTTATGA
* *
68600561 TAAGGCTTCGGCCCAGTGATATGATTTATGATAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68600623 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
68600640 AACCGTTAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
60 41 0.57
61 16 0.22
62 15 0.21
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (62 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68600657 original size:91 final size:90
Alignment explanation
Indices: 68600502--68600673 Score: 224
Period size: 91 Copynumber: 1.9 Consensus size: 90
68600492 GTTTACAGTA
* * * * *
68600502 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGGCCAGATATATGATTTATGTAAGGC
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGCCCAGATATACGATTAACGAAAGGC
*
68600567 TTCGGCCCAGTGATATGATTTATGAT
66 TTCAGCCCAGT-ATATGATTTATGAT
68600593 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGACCCAG-TA-ACCG-TTAAACGAAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCG-CCCAGATATA-CGATT-AACGAAA
*
68600655 GGCTTCAGCCTAGTATATG
63 GGCTTCAGCCCAGTATATG
68600674 CCAAGACGAA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
90 8 0.11
91 59 0.83
92 4 0.06
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (90 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTCGCCCAGATATACGATTAACGAAAGGC
TTCAGCCCAGTATATGATTTATGAT
Found at i:68602962 original size:54 final size:54
Alignment explanation
Indices: 68602904--68603061 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
68602894 ATTACCAAAG
* * * *
68602904 TACCCCCGATTTACATAATTACCGTTTTATCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* * * * * * *
68602958 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* *** * *
68603012 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACC
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACC
68603062 AAAATACCCT
Statistics
Matches: 85, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 85 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
Found at i:68603034 original size:27 final size:27
Alignment explanation
Indices: 68602904--68603034 Score: 163
Period size: 27 Copynumber: 4.9 Consensus size: 27
68602894 ATTACCAAAG
* * *
68602904 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
68602931 TATCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
68602958 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
68602985 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
68603012 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAAAATTACT
68603035 AAAATACCCT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:68603042 original size:27 final size:27
Alignment explanation
Indices: 68602958--68603315 Score: 201
Period size: 27 Copynumber: 13.2 Consensus size: 27
68602948 ATTACCGTTT
* ***
68602958 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ****
68602985 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
68603012 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
68603039 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
68603066 TACCCTTGA-TCAGTAAAATTACAAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * *
68603093 TACCCTAG-TTTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
68603119 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
68603146 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* * * **
68603173 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * *
68603200 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
*
68603227 TACCC-CTGATTTACAAAATTA-TAGAAA
1 TACCCTC-GATTTATAAAATTACTA-AAA
* *
68603254 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAT-AAAATTACTA-AAA
* * * *
68603283 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
68603310 TACCCT
1 TACCCT
68603316 TGGTTTGTAG
Statistics
Matches: 271, Mismatches: 46, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
26 24 0.09
27 218 0.80
28 9 0.03
29 20 0.07
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:68603070 original size:81 final size:81
Alignment explanation
Indices: 68602866--68603317 Score: 216
Period size: 81 Copynumber: 5.6 Consensus size: 81
68602856 TTAGTTTACC
* * ** * * ** * * *
68602866 AATTATTATAATACCCTTGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGATTTATAAAATTACAGTTT
*
68602931 TATCCTCGATTTACAA
66 TACCCTCGATTTACAA
***** * * * * *** * *
68602947 AATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATTACTGTTT
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGATTTATAAAATTACAGTTT
68603012 TACCCTCGATTTACAA
66 TACCCTCGATTTACAA
* * ***
68603028 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGA-TCAGTAAAATTACAAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGATTTA-TAAAATTACAGTT
* * **
68603092 ATACCCTAG-TTTGTAA
65 TTACCCTCGATTTACAA
* * * * * *
68603108 AATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA-A
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGA-TTTATAAAATTA-CAGT
** * ***
68603171 AATACCACT-GGTTTGTGA
64 TTTACC-CTCGATTTACAA
** *** * * * * ***
68603189 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTATAGAAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGATTTATAAAATTACAGTTT
*
68603254 TACCCTTGACTTT-CTAAA
66 TACCCTCGA-TTTAC--AA
* * *
68603272 AATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAATACCCTTG
1 AATTACTA-AAATACCCTTGGTTTATAAAATTACCAAAATACCCTTG
68603318 GTTTGTAGAT
Statistics
Matches: 285, Mismatches: 73, Indels: 24
0.75 0.19 0.06
Matches are distributed among these distances:
79 1 0.00
80 66 0.23
81 178 0.62
82 4 0.01
83 36 0.13
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (81 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTTGATTTATAAAATTACAGTTT
TACCCTCGATTTACAA
Found at i:68603137 original size:80 final size:81
Alignment explanation
Indices: 68603026--68603236 Score: 257
Period size: 80 Copynumber: 2.6 Consensus size: 81
68603016 CTCGATTTAC
* ** *
68603026 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAGTAAAATTACAAA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAAAATTACAAA
68603091 AATACC-CTAGTTTGT
66 AATACCACTAGTTTGT
* ** *
68603106 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGA-TCAGTAAAATTACAA
*
68603170 AAATACCACTGGTTTGT
65 AAATACCACTAGTTTGT
* ** **
68603187 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 AAAATTACTAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCTGAT
68603237 TTACAAAATT
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 1 0.01
80 65 0.58
81 45 0.40
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATCAGTAAAATTACAAA
AATACCACTAGTTTGT
Found at i:68603318 original size:27 final size:27
Alignment explanation
Indices: 68603012--68603344 Score: 235
Period size: 27 Copynumber: 12.3 Consensus size: 27
68603002 ATTACTGTTT
* * * *
68603012 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
68603039 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
68603066 TACCCTT-GATCAGTAAAATTACAAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * * *
68603093 TACCC-TAGTTTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
68603119 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
68603146 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
68603173 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
*** *
68603200 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
68603227 TACCCCTGATTTACAAAATTA-TAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* * *
68603254 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * *
68603283 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
68603310 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
68603337 CACCCTTG
1 TACCCTTG
68603345 TAGGGTGAAA
Statistics
Matches: 252, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
26 23 0.09
27 200 0.79
28 9 0.04
29 20 0.08
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:68603413 original size:27 final size:27
Alignment explanation
Indices: 68603383--68603466 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
68603373 TAGGTAAAAA
68603383 GACCGTAAATCCCCTGTAGGGTAAAGT
1 GACCGTAAATCCCCTGTAGGGTAAAGT
* *
68603410 GACCGTAAAGCCCCTGCAGGGTAAAGT
1 GACCGTAAATCCCCTGTAGGGTAAAGT
* *
68603437 GACCGT-AATACCCCTGTATGGTAAAAT
1 GACCGTAAAT-CCCCTGTAGGGTAAAGT
68603464 GAC
1 GAC
68603467 GAATATGCCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (27 bp):
GACCGTAAATCCCCTGTAGGGTAAAGT
Found at i:68604234 original size:16 final size:16
Alignment explanation
Indices: 68604213--68604243 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68604203 CAAATATGGG
*
68604213 CATGACATTCTGCATA
1 CATGACATGCTGCATA
68604229 CATGACATGCTGCAT
1 CATGACATGCTGCAT
68604244 GGGTTGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (16 bp):
CATGACATGCTGCATA
Found at i:68604349 original size:23 final size:24
Alignment explanation
Indices: 68604284--68604355 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
68604274 AAAAGTGTTA
*
68604284 TGCCCCAGTTTACCGAAAAGGGCTT
1 TGCCCCAGTTTATC-AAAAGGGCTT
68604309 TGCCCCAGTTTATCAAAAGGGCTT
1 TGCCCCAGTTTATCAAAAGGGCTT
*
68604333 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAG-GGCT
68604356 AGGCCTCTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
23 9 0.20
24 22 0.50
25 13 0.30
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
TGCCCCAGTTTATCAAAAGGGCTT
Found at i:68604596 original size:31 final size:31
Alignment explanation
Indices: 68604561--68604734 Score: 260
Period size: 31 Copynumber: 5.6 Consensus size: 31
68604551 AGTTTACAGT
*
68604561 AAAGGCTTTGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
68604592 AAAGGCTTCGGCCCAG-AGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTA-ATATGATTTATGA
* *
68604623 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
* *
68604654 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
* *
68604685 TAAGGCTTTGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTAATATGATTTATGA
*
68604716 AAAGGCTTCGACCCAGTAA
1 AAAGGCTTCGGCCCAGTAA
68604735 CCGTTAAACG
Statistics
Matches: 133, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
30 1 0.01
31 132 0.99
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGATTTATGA
Found at i:68604732 original size:62 final size:62
Alignment explanation
Indices: 68604562--68604732 Score: 297
Period size: 62 Copynumber: 2.8 Consensus size: 62
68604552 GTTTACAGTA
*
68604562 AAGGCTTTGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGAGATATGATTTATGAT
1 AAGGCTTTGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAT
* * *
68604624 AAGGCTTCGGCCCAGTGATATGATTTATGATAAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTTGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAT
*
68604686 AAGGCTTTGGCCCAGTAATATGATTTATGAAAAGGCTTCGACCCAGT
1 AAGGCTTTGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGT
68604733 AACCGTTAAA
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 101 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (62 bp):
AAGGCTTTGGCCCAGTAATATGATTTATGAAAAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:68609578 original size:42 final size:42
Alignment explanation
Indices: 68609471--68609621 Score: 212
Period size: 42 Copynumber: 3.6 Consensus size: 42
68609461 ATACCAATGA
* * * * *
68609471 CATATCTCAAATATGGTCTTACATGAAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGC
* *
68609513 CAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGC
*
68609556 CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGT
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGC
*
68609598 CATATCTCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
68609622 ATAATTTTAG
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 62 0.64
43 35 0.36
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATCGATGC
Found at i:68616426 original size:13 final size:13
Alignment explanation
Indices: 68616410--68616451 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
68616400 GACACGTCTA
*
68616410 TGTGACACACCCG
1 TGTGACCCACCCG
68616423 TGTGACCCACCCG
1 TGTGACCCACCCG
68616436 TGTGACCCACCCG
1 TGTGACCCACCCG
68616449 TGT
1 TGT
68616452 CCTATACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.17, C:0.40, G:0.24, T:0.19
Consensus pattern (13 bp):
TGTGACCCACCCG
Found at i:68620014 original size:29 final size:29
Alignment explanation
Indices: 68619971--68620027 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
68619961 ATTTAATACG
*
68619971 AACTTTGGCAAAATTACATTTTTGCCCCA
1 AACTTTGGCAAAATTACACTTTTGCCCCA
* *
68620000 AACTTTTGCATAATTACACTTTTGCCCC
1 AACTTTGGCAAAATTACACTTTTGCCCC
68620028 TAGGCTCGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTGCCCCA
Found at i:68636490 original size:45 final size:45
Alignment explanation
Indices: 68636426--68636780 Score: 482
Period size: 45 Copynumber: 7.9 Consensus size: 45
68636416 CGTTGATTTG
68636426 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
* *
68636471 ACTATTCGGGCCTTTGAGCCTAGCAGGTTATGATGCCGATGAAAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
* * * *
68636516 ACTATTCAGGCCTTTGAGCCTAGTAGGCTATGATGCTGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
*
68636561 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
*
68636606 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
* * * *
68636651 ATTATTCGGGCCTTTGAGCCTATCAGGCTATAATGCCGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
* * *
68636696 ACTATTCGGG-CTTTCGAGCATAGCAGGCTATAATACCGGTGAAAT
1 ACTATTCGGGCCTTT-GAGCCTAGCAGGCTATGATGCCGGTGAAAT
** * * * * *
68636741 GGTAATCAGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGA
68636781 TTTGAGAAAA
Statistics
Matches: 277, Mismatches: 31, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
43 10 0.04
44 17 0.06
45 249 0.90
46 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
ACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAAT
Found at i:68639277 original size:27 final size:28
Alignment explanation
Indices: 68639193--68639290 Score: 144
Period size: 27 Copynumber: 3.5 Consensus size: 28
68639183 CATGAGATTG
* * *
68639193 GCACTAAGTGTGCGGGTTTAAATTATACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
68639222 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
68639250 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
68639277 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
68639291 GACTTAATAT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 24 0.37
28 23 0.35
29 18 0.28
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:68639301 original size:27 final size:27
Alignment explanation
Indices: 68639193--68639303 Score: 98
Period size: 27 Copynumber: 4.0 Consensus size: 27
68639183 CATGAGATTG
** * *
68639193 GCACTAAGTGTGCGGGTTTAAATTATACA
1 GCACTAAGTGTGC-GACTTGAA-TATATA
* *
68639222 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTGAATATATA
* *
68639250 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTGAATATATA
*
68639277 GCACTGAGTGTGCGGACTT-AATATATA
1 GCACTAAGTGTGC-GACTTGAATATATA
68639304 TTTTTGAATC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 30 0.42
28 25 0.35
29 17 0.24
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGAATATATA
Found at i:68639304 original size:29 final size:27
Alignment explanation
Indices: 68639193--68639304 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
68639183 CATGAGATTG
* *
68639193 GCACTAAGTGTGCGGGTTTAAATTATACA
1 GCACTAAGTGTGC-GATTT-AATTATATA
*
68639222 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-TTTAATTATATA
* *
68639250 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTAATTATATA
* *
68639277 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GATTTAAT-TATAT
68639305 TTTTGAATCA
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
27 23 0.32
28 29 0.40
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTAATTATATA
Found at i:68646377 original size:40 final size:40
Alignment explanation
Indices: 68646294--68646439 Score: 197
Period size: 40 Copynumber: 3.7 Consensus size: 40
68646284 TTCTAGCGCA
* * * *
68646294 AGCCTACGGGTCTTTAA-CCCAGATACCATTCCAACACGA-
1 AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
* *
68646333 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
68646373 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
1 AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
68646413 AGCTTACGGGTCTTTAAGCCCGGATAC
1 AGCCTACGGGTCTTTAAGCCCGGATAC
68646440 CACATCAAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.17
40 80 0.83
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:68647729 original size:21 final size:21
Alignment explanation
Indices: 68647704--68647744 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68647694 CGGCAATTTC
68647704 AATTCATACCT-TTCAACCATG
1 AATTCA-ACCTATTCAACCATG
*
68647725 AATTCAACTTATTCAACCAT
1 AATTCAACCTATTCAACCAT
68647745 CATTTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTATTCAACCATG
Found at i:68647754 original size:21 final size:21
Alignment explanation
Indices: 68647715--68647754 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
68647705 ATTCATACCT
* *
68647715 TTCAACCATGAATTCAACTTA
1 TTCAACCATCAATTAAACTTA
*
68647736 TTCAACCATCATTTAAACT
1 TTCAACCATCAATTAAACT
68647755 ACTTAACATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (21 bp):
TTCAACCATCAATTAAACTTA
Found at i:68654120 original size:40 final size:40
Alignment explanation
Indices: 68654037--68654182 Score: 197
Period size: 40 Copynumber: 3.7 Consensus size: 40
68654027 TTCTAGCGCA
* * * *
68654037 AGCCTACGGGTCTTTAA-CCCAGATACCATTCCAACACGA-
1 AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
* *
68654076 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
68654116 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
1 AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
68654156 AGCTTACGGGTCTTTAAGCCCGGATAC
1 AGCCTACGGGTCTTTAAGCCCGGATAC
68654183 CACATCAAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.17
40 80 0.83
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCCTACGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:68655468 original size:21 final size:21
Alignment explanation
Indices: 68655443--68655483 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68655433 CGGAAATTTC
68655443 AATTCATACTT-GTCAACCATG
1 AATTCA-ACTTAGTCAACCATG
*
68655464 AATTCAACTTATTCAACCAT
1 AATTCAACTTAGTCAACCAT
68655484 CATTTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (21 bp):
AATTCAACTTAGTCAACCATG
Found at i:68657533 original size:26 final size:25
Alignment explanation
Indices: 68657504--68657560 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
68657494 TTATTTTGAG
68657504 TGAATGAATGATTGAATGGTTGAATT
1 TGAATGAATGA-TGAATGGTTGAATT
* *
68657530 TGAATTGTATTATGAATGGTTGAATT
1 TGAA-TGAATGATGAATGGTTGAATT
68657556 TGAAT
1 TGAAT
68657561 TGTATTAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 22 0.79
27 5 0.18
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (25 bp):
TGAATGAATGATGAATGGTTGAATT
Found at i:68657534 original size:14 final size:14
Alignment explanation
Indices: 68657515--68657560 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
68657505 GAATGAATGA
68657515 TTGAATGGTTGAAT
1 TTGAATGGTTGAAT
*
68657529 TTGAA---TTGTAT
1 TTGAATGGTTGAAT
68657540 TATGAATGGTTGAAT
1 T-TGAATGGTTGAAT
68657555 TTGAAT
1 TTGAAT
68657561 TGTATTAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 6 0.23
12 4 0.15
14 10 0.38
15 6 0.23
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (14 bp):
TTGAATGGTTGAAT
Found at i:68657561 original size:26 final size:26
Alignment explanation
Indices: 68657516--68657567 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
68657506 AATGAATGAT
68657516 TGAATGGTTGAATTTGAATTGTATTA
1 TGAATGGTTGAATTTGAATTGTATTA
68657542 TGAATGGTTGAATTTGAATTGTATTA
1 TGAATGGTTGAATTTGAATTGTATTA
68657568 GATCAAGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (26 bp):
TGAATGGTTGAATTTGAATTGTATTA
Found at i:68664017 original size:47 final size:47
Alignment explanation
Indices: 68663963--68664418 Score: 750
Period size: 47 Copynumber: 9.6 Consensus size: 47
68663953 TATTTGAATA
*
68663963 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68664010 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68664057 AATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
68664108 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68664155 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68664202 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
68664251 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68664298 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
68664345 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68664392 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
68664419 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 17, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 289 0.75
49 58 0.15
51 39 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:68664264 original size:143 final size:143
Alignment explanation
Indices: 68663963--68664418 Score: 772
Period size: 143 Copynumber: 3.2 Consensus size: 143
68663953 TATTTGAATA
*
68663963 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
68664028 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGTGATAAGGCCTA
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGTGATAAGGCCTA
68664093 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
68664108 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
68664173 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
68664238 GGCCGATGTGATG
131 GGCCGATGTGATG
68664251 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
68664316 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
* *
68664379 GGCCAACGTGATG
131 GGCCGATGTGATG
* *
68664392 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
68664419 TCCCGAAGGG
Statistics
Matches: 298, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 54 0.18
143 134 0.45
145 110 0.37
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:68664675 original size:37 final size:37
Alignment explanation
Indices: 68664537--68664674 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
68664527 CCGAGCTCTA
68664537 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
68664574 AAGACCCGATGACTACGTGTGGAGATTATGTCCGTGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
68664611 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
68664648 AAGACCCGATAACTTCATGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
68664675 TCGTCTGAGC
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:68666910 original size:50 final size:50
Alignment explanation
Indices: 68666833--68667062 Score: 216
Period size: 50 Copynumber: 4.6 Consensus size: 50
68666823 ATTGTGAGTA
* *
68666833 CACATGTGTAGTACTAAGTGAAGGCTACTACGTGTACCATACTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * * **
68666883 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-T
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGT
* * * *
68666934 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGT
* * * * * *
68666984 CACGTGTGTAGTACTACGTGCAGGCTACTACATGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
* * *
68667033 CGCATGTGTAGTACCAAGTGTAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
68667063 TGCGTATCAG
Statistics
Matches: 148, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 30 0.20
50 74 0.50
51 35 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGT
Found at i:68674370 original size:50 final size:50
Alignment explanation
Indices: 68674297--68674522 Score: 208
Period size: 50 Copynumber: 4.5 Consensus size: 50
68674287 TGAGTACATG
* * *
68674297 TGTGTAGTACTAAGTGAAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** *
68674347 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * *
68674398 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * * * *
68674448 TGTGTAGTACTACGTGCAGGCTACTACATGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* *
68674497 TGTGTAGTACCAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
68674523 TGCGTATCAG
Statistics
Matches: 145, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 30 0.21
50 71 0.49
51 35 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:68684049 original size:55 final size:55
Alignment explanation
Indices: 68683984--68684088 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
68683974 TGACATATCG
68683984 GTGTGCGACACGACTGTGTGACCCTACTCAGAAAGTTACACG-GGTGAGGACACGA
1 GTGTGCGACACGACTGTGTGACCCTACTCAGAAAGTTACACGAGG-GAGGACACGA
* * *
68684039 GTGTGTGACACGTCTGTGTGACCCTACTCAGAGAGTTACACGAGGGAGGA
1 GTGTGCGACACGACTGTGTGACCCTACTCAGAAAGTTACACGAGGGAGGA
68684089 TACGGGCTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
55 44 0.96
56 2 0.04
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (55 bp):
GTGTGCGACACGACTGTGTGACCCTACTCAGAAAGTTACACGAGGGAGGACACGA
Found at i:68687874 original size:18 final size:18
Alignment explanation
Indices: 68687840--68687874 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68687830 GCAAAAGAGT
*
68687840 CAAGAGCAAAGGCAAGGG
1 CAAGAGCAAAGGAAAGGG
*
68687858 CAAGAGCAAGGGAAAGG
1 CAAGAGCAAAGGAAAGG
68687875 ACTCGAGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.40, T:0.00
Consensus pattern (18 bp):
CAAGAGCAAAGGAAAGGG
Found at i:68691784 original size:13 final size:13
Alignment explanation
Indices: 68691766--68691791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68691756 TCCTAAAAAA
68691766 GCTACTTCTATTT
1 GCTACTTCTATTT
68691779 GCTACTTCTATTT
1 GCTACTTCTATTT
68691792 TTATTTATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (13 bp):
GCTACTTCTATTT
Found at i:68695724 original size:3 final size:3
Alignment explanation
Indices: 68695718--68695751 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
68695708 AACAGCAGCT
68695718 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
68695752 AAAATTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:68706327 original size:35 final size:35
Alignment explanation
Indices: 68706281--68706351 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
68706271 TGAAGCGTTC
*
68706281 ATCCTAGACGTATCAAAAAGGTATAATTTTGATTA
1 ATCCTAGACGTATCAAAAAGGTACAATTTTGATTA
68706316 ATCCTAGACGTATCAAAAAGGTACAATTTTGATTA
1 ATCCTAGACGTATCAAAAAGGTACAATTTTGATTA
68706351 A
1 A
68706352 GTGTTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (35 bp):
ATCCTAGACGTATCAAAAAGGTACAATTTTGATTA
Found at i:68713974 original size:39 final size:40
Alignment explanation
Indices: 68713929--68714153 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
68713919 GCTCCTCGTT
* * * *
68713929 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
68713969 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
68714008 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
68714048 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
68714088 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
68714129 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
68714154 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:68714162 original size:41 final size:41
Alignment explanation
Indices: 68714085--68714162 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68714075 CTTGTATCTC
* * *
68714085 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68714126 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68714163 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68721887 original size:39 final size:40
Alignment explanation
Indices: 68721842--68722066 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
68721832 GCTCCTCGTT
* * * *
68721842 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
68721882 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
68721921 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
68721961 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
68722001 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
68722042 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
68722067 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:68722075 original size:41 final size:41
Alignment explanation
Indices: 68721998--68722075 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
68721988 CTTGTATCTC
* * *
68721998 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
68722039 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
68722076 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:68728482 original size:291 final size:288
Alignment explanation
Indices: 68727961--68728540 Score: 1054
Period size: 291 Copynumber: 2.0 Consensus size: 288
68727951 GGGGTTTAAT
68727961 TTTATCTCCATCTTTGTACTCTTCATTTTTTTCGTTATAGTGAAATTATATTTACCCATGGTTTT
1 TTTATCTCCATCTTTGTACTCTTCATTTTTTTCGTTATAGTGAAATTATATTTACCCATGGTTTT
68728026 TATCTTCTTTGAAGATGTTTTTTTCACGTAAAATATTTGTGTTCGATCTTTTCGATTTCTTTATT
66 TATCTTCTTTGAAGATGTTTTTTTCACGTAAAATATTTGTGTTCGATCTTTTCGATTTCTTTATT
** *
68728091 ATTTTACTTATTCGTTATTTAATCGAGTTTATTTCCAACAGGTTAAAAAAATAAAAATTGATTTT
131 ATTTTACTTATTCGTTATTTAATCGAGTTTATCCCCAACAGGTTAAAAAAATAAAAATTAATTTT
68728156 TAAAATATGAAAAATGAAAATATGTGACACTTAAAAAACTAAAACAAATATTGTTTAGTGTTGGT
196 TAAAATATGAAAAATGAAAATATGTGACACTTAAAAAACTAAAACAAATATTGTTTAGTGTTGGT
68728221 GTAACTAGTAGCAAACATCGATTGCCAC
261 GTAACTAGTAGCAAACATCGATTGCCAC
*
68728249 TTTATCTCCATCTTTGTACTCTTCATTTTTTTTTTGTTATAGTGAAATTATATTTACCCATGGTT
1 TTTATCTCCATCTTTGTACTCTTCA--TTTTTTTCGTTATAGTGAAATTATATTTACCCATGG-T
*
68728314 TTTTATCTTCTTTGAAGA-GTTTTTTTTCACGTAAAATATTTGTGTTCGATTTTTTCGATTTCTT
63 TTTTATCTTCTTTGAAGATG-TTTTTTTCACGTAAAATATTTGTGTTCGATCTTTTCGATTTCTT
68728378 TATTATTTTACTTATTCGTTATTTAATCGAGTTTATCCCCAACAGGTTAAAAAAATAAAAATTAA
127 TATTATTTTACTTATTCGTTATTTAATCGAGTTTATCCCCAACAGGTTAAAAAAATAAAAATTAA
*
68728443 TTTTTAAAATATGAAAAATGAAAATATGTGACACTTAAAAAACTAAAACAAATATTGTTTATTGT
192 TTTTTAAAATATGAAAAATGAAAATATGTGACACTTAAAAAACTAAAACAAATATTGTTTAGTGT
*
68728508 TGGTGTAACTAGTCGCAAACATCGATTGCCAC
257 TGGTGTAACTAGTAGCAAACATCGATTGCCAC
68728540 T
1 T
68728541 CATTATAGCA
Statistics
Matches: 281, Mismatches: 7, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
288 25 0.09
290 36 0.13
291 220 0.78
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (288 bp):
TTTATCTCCATCTTTGTACTCTTCATTTTTTTCGTTATAGTGAAATTATATTTACCCATGGTTTT
TATCTTCTTTGAAGATGTTTTTTTCACGTAAAATATTTGTGTTCGATCTTTTCGATTTCTTTATT
ATTTTACTTATTCGTTATTTAATCGAGTTTATCCCCAACAGGTTAAAAAAATAAAAATTAATTTT
TAAAATATGAAAAATGAAAATATGTGACACTTAAAAAACTAAAACAAATATTGTTTAGTGTTGGT
GTAACTAGTAGCAAACATCGATTGCCAC
Found at i:68730280 original size:27 final size:27
Alignment explanation
Indices: 68730232--68730444 Score: 224
Period size: 27 Copynumber: 7.9 Consensus size: 27
68730222 GCGAGGCTGC
* *
68730232 CAGATATTGTGACGA-AGTCACCAGATA
1 CAGATATTGTGGC-ATAGCCACCAGATA
*
68730259 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCATAGCCACCAGATA
* * *
68730285 CAGATATATGTGGCAGAACCACTAGAT-
1 CAGATAT-TGTGGCATAGCCACCAGATA
*
68730312 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCATAGCCACCAGATA
*
68730339 CAGATATATGTGGCATATCCACCAGAT-
1 CAGATAT-TGTGGCATAGCCACCAGATA
*
68730366 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCATAGCCACCAGATA
*
68730393 CAGATATATGTGGCATATCCACCAGAT-
1 CAGATAT-TGTGGCATAGCCACCAGATA
68730420 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCATAGCCACCAG
68730445 GACGCTTCCT
Statistics
Matches: 159, Mismatches: 15, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
26 13 0.08
27 140 0.88
28 6 0.04
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCATAGCCACCAGATA
Found at i:68730332 original size:54 final size:54
Alignment explanation
Indices: 68730250--68730447 Score: 335
Period size: 54 Copynumber: 3.7 Consensus size: 54
68730240 GTGACGAAGT
* * * *
68730250 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAAC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCATATC
*
68730304 CACTAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCATATC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCATATC
68730358 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCATATC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCATATC
68730412 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
68730448 GCTTCCTCCA
Statistics
Matches: 137, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
53 5 0.04
54 132 0.96
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCATATC
Found at i:68732075 original size:26 final size:26
Alignment explanation
Indices: 68732044--68732149 Score: 185
Period size: 26 Copynumber: 4.1 Consensus size: 26
68732034 TGAAATGCCC
*
68732044 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
68732070 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68732096 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68732122 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68732148 AT
1 AT
68732150 TAATTTGTAC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68734794 original size:93 final size:93
Alignment explanation
Indices: 68734682--68734853 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
68734672 GCCCATAAGT
* *
68734682 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68734747 CGAGCCCGGATGCCTAGTTACATCTCTC
66 CGAGCCCGGATGCCTAGTTACATCTCTC
*
68734775 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
68734840 CGAGTTCGGATGCC
66 CGAGCCCGGATGCC
68734854 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCCCGGATGCCTAGTTACATCTCTC
Found at i:68734849 original size:46 final size:46
Alignment explanation
Indices: 68734674--68734849 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
68734664 TGTAACCCGC
*
68734674 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
68734720 CCATAAGTGAACTCGGACTCAACTCAACGAGCCCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
68734766 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68734813 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68734850 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 68 0.63
47 30 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68737270 original size:30 final size:30
Alignment explanation
Indices: 68737226--68737314 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
68737216 CAAAGATAAT
68737226 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
68737255 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
68737285 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
68737315 CGATATTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:68737274 original size:15 final size:15
Alignment explanation
Indices: 68737226--68737305 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
68737216 CAAAGATAAT
*
68737226 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
68737240 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
68737255 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
68737270 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
68737285 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
68737300 AAGAAA
1 AAGAAA
68737306 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:68737314 original size:15 final size:15
Alignment explanation
Indices: 68737237--68737314 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
68737227 AGAAAACCGA
68737237 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
68737252 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
68737266 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
68737281 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
68737297 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
68737312 ATA
1 ATA
68737315 CGATATTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Done.