Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 212 of 290
Found at i:68740196 original size:93 final size:93
Alignment explanation
Indices: 68740037--68740207 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
68740027 CCCATAAGTG
* * * *
68740037 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTTAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
68740102 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
*
68740130 AACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
*
68740195 GAGTTCGGATGCC
66 GAGCTCGGATGCC
68740208 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:68740203 original size:46 final size:46
Alignment explanation
Indices: 68740028--68740203 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
68740018 TGTAACCCGC
* *
68740028 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
68740074 CCATAAGTTAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
68740124 CTC-TCA---AACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68740167 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
68740204 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
46 63 0.57
47 26 0.23
49 1 0.01
50 7 0.06
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68743722 original size:43 final size:44
Alignment explanation
Indices: 68743652--68743780 Score: 129
Period size: 43 Copynumber: 3.0 Consensus size: 44
68743642 CATATAACTC
* * * *
68743652 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACAT
1 ATACAATGCCAATATCCAAGACAGGGTCTTACATGTAATCACAT
* * * * *
68743695 AT-CGATGCCACTATCCAATACAGGGTCTTACACGTAATCTCA-
1 ATACAATGCCAATATCCAAGACAGGGTCTTACATGTAATCACAT
* * *
68743737 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATACAATGCCAATATCCAAGACAGGGTCTTACATGTAATCACAT
68743781 CTCTATAACG
Statistics
Matches: 66, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
42 8 0.12
43 58 0.88
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (44 bp):
ATACAATGCCAATATCCAAGACAGGGTCTTACATGTAATCACAT
Found at i:68752554 original size:46 final size:46
Alignment explanation
Indices: 68752503--68752601 Score: 162
Period size: 46 Copynumber: 2.2 Consensus size: 46
68752493 TCAAAATTAT
*
68752503 AAATTAAGTCAAGCCTTTGTGATAGTTTAATAAATTAATGCAAACA
1 AAATTAAGTCAAGCATTTGTGATAGTTTAATAAATTAATGCAAACA
* * *
68752549 AAATTAAGTCAAGCATTTGTTATAGTTTAATAAATTAATTCAAATA
1 AAATTAAGTCAAGCATTTGTGATAGTTTAATAAATTAATGCAAACA
68752595 AAATTAA
1 AAATTAA
68752602 CACAATCTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.35
Consensus pattern (46 bp):
AAATTAAGTCAAGCATTTGTGATAGTTTAATAAATTAATGCAAACA
Found at i:68761710 original size:46 final size:46
Alignment explanation
Indices: 68761659--68761757 Score: 162
Period size: 46 Copynumber: 2.2 Consensus size: 46
68761649 TCAAAATTTT
*
68761659 AAATTAAGTCAAGCCTTTGTGATAGTTTAATAAATTAATACAAACA
1 AAATTAAGTCAAGCATTTGTGATAGTTTAATAAATTAATACAAACA
* * *
68761705 AAATTAAGTCAAGCATTTGTTATAGTTTAATAAATTAATTCAAATA
1 AAATTAAGTCAAGCATTTGTGATAGTTTAATAAATTAATACAAACA
68761751 AAATTAA
1 AAATTAA
68761758 CACAATCTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.35
Consensus pattern (46 bp):
AAATTAAGTCAAGCATTTGTGATAGTTTAATAAATTAATACAAACA
Found at i:68767232 original size:47 final size:47
Alignment explanation
Indices: 68767181--68767877 Score: 1097
Period size: 47 Copynumber: 14.7 Consensus size: 47
68767171 TTAGGATTCT
* *
68767181 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
68767228 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
68767275 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
68767322 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
68767371 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
68767420 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
68767467 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
68767516 ATGTGATGAATGTGAAAGTGTATATA--T-AT---G--TAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
68767555 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
68767604 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
68767653 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
68767702 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
68767749 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
68767796 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
68767843 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
68767878 TCCCGAAGGG
Statistics
Matches: 618, Mismatches: 17, Indels: 30
0.93 0.03 0.05
Matches are distributed among these distances:
39 29 0.05
41 7 0.01
43 1 0.00
44 4 0.01
45 1 0.00
46 1 0.00
47 308 0.50
49 267 0.43
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:68767444 original size:96 final size:96
Alignment explanation
Indices: 68767202--68767877 Score: 1128
Period size: 96 Copynumber: 7.1 Consensus size: 96
68767192 GTGAACATGC
68767202 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
68767267 AATGGCCGATGTGATGAATGTGAAAGTG--T
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
68767296 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
68767361 CCAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
68767394 ATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
68767459 AATGGCTGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
68767490 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--T-AT---G--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
68767547 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
68767578 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
68767643 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTAT
68767676 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
68767741 AATGGCCGATGTGATGAATGTGAAAGTG--T
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
68767770 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * *
68767835 AGTGGCCAACGTGATGGATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
68767866 A-A-ATGTGATAAG
1 ATATATGTGATAAG
68767878 TCCCGAAGGG
Statistics
Matches: 553, Mismatches: 13, Indels: 32
0.92 0.02 0.05
Matches are distributed among these distances:
88 77 0.14
90 7 0.01
92 1 0.00
93 4 0.01
94 144 0.26
95 1 0.00
96 195 0.35
98 124 0.22
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:68768052 original size:37 final size:37
Alignment explanation
Indices: 68767996--68768074 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68767986 CCGAGCTCTA
* * *
68767996 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
68768033 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68768070 AAGAC
1 AAGAC
68768075 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68770108 original size:26 final size:24
Alignment explanation
Indices: 68770078--68770137 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 24
68770068 ACCAACTTAC
68770078 AAAA-TAGAAAACAAATATTACTAAAA
1 AAAATTAGAAAAC--AT-TTACTAAAA
68770104 AAAATTAG-AAACATTTACTAAAA
1 AAAATTAGAAAACATTTACTAAAA
68770127 AAAATTAGAAA
1 AAAATTAGAAA
68770138 CATACCTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
23 17 0.53
24 4 0.12
26 8 0.25
27 3 0.09
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.22
Consensus pattern (24 bp):
AAAATTAGAAAACATTTACTAAAA
Found at i:68770129 original size:22 final size:23
Alignment explanation
Indices: 68770095--68770140 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
68770085 AAAACAAATA
68770095 TTACTAAAAAAAATTAGAAACAT
1 TTACTAAAAAAAATTAGAAACAT
68770118 TTACTAAAAAAAATTAGAAACAT
1 TTACTAAAAAAAATTAGAAACAT
68770141 ACCTTGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (23 bp):
TTACTAAAAAAAATTAGAAACAT
Found at i:68770782 original size:15 final size:14
Alignment explanation
Indices: 68770764--68770806 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
68770754 TATAGTTTAA
68770764 AGTTTAGGGGTTTTG
1 AGTTTA-GGGTTTTG
*
68770779 AGTTTATGGTTTTG
1 AGTTTAGGGTTTTG
68770793 AGGTTTATGGGTTT
1 A-GTTTA-GGGTTT
68770807 AGAGATTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 8 0.33
15 11 0.46
16 5 0.21
ACGTcount: A:0.14, C:0.00, G:0.35, T:0.51
Consensus pattern (14 bp):
AGTTTAGGGTTTTG
Found at i:68770848 original size:7 final size:7
Alignment explanation
Indices: 68770745--68770900 Score: 84
Period size: 7 Copynumber: 21.9 Consensus size: 7
68770735 ATCTAAGTAT
68770745 TTTAGGG
1 TTTAGGG
**
68770752 TTTATAG
1 TTTAGGG
**
68770759 TTTAAAG
1 TTTAGGG
68770766 TTTAGGGG
1 TTTA-GGG
* *
68770774 TTTTGAG
1 TTTAGGG
*
68770781 TTTATGG
1 TTTAGGG
*
68770788 TTTTGAGG
1 TTTAG-GG
68770796 TTTATGGG
1 TTTA-GGG
*
68770804 TTTAGAG
1 TTTAGGG
*
68770811 ATT-GGG
1 TTTAGGG
68770817 ATTTAGGG
1 -TTTAGGG
68770825 TCTT-GAGG
1 T-TTAG-GG
68770833 TTT-GGG
1 TTTAGGG
68770839 TTTAGGG
1 TTTAGGG
*
68770846 TTTAAGG
1 TTTAGGG
* *
68770853 TTTAAGA
1 TTTAGGG
*
68770860 TTTATGG
1 TTTAGGG
*
68770867 TTTAGAG
1 TTTAGGG
*
68770874 TTTATGG
1 TTTAGGG
*
68770881 TTTAAGG
1 TTTAGGG
68770888 TTTAGGG
1 TTTAGGG
68770895 TTTAGG
1 TTTAGG
68770901 AACGATCAAA
Statistics
Matches: 114, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
6 7 0.06
7 83 0.73
8 23 0.20
9 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:68770869 original size:28 final size:28
Alignment explanation
Indices: 68770836--68770900 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
68770826 CTTGAGGTTT
68770836 GGGTTTAGGGTTTAAGGTTTAAGATTTA
1 GGGTTTAGGGTTTAAGGTTTAAGATTTA
* * * *
68770864 TGGTTTAGAGTTTATGGTTTAAGGTTTA
1 GGGTTTAGGGTTTAAGGTTTAAGATTTA
68770892 GGGTTTAGG
1 GGGTTTAGG
68770901 AACGATCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.45
Consensus pattern (28 bp):
GGGTTTAGGGTTTAAGGTTTAAGATTTA
Found at i:68771266 original size:114 final size:114
Alignment explanation
Indices: 68771076--68771284 Score: 294
Period size: 114 Copynumber: 1.8 Consensus size: 114
68771066 ATCATTATGT
* * *
68771076 TTTAAACAAAACGGTGCCATTTTATTGGATTTTTCAGTGGCATTTTTGGTAAAATGCCGCAATAG
1 TTTAAACAAAACGGTGCCATTTTATTGGATTTTTCAGTGGAATTTTCGGTAAAATGCCGAAATAG
** * *
68771141 GTTAGGATTTAGCGGCGCTAGGGTAAAAACGCCGCTAAATGTTATTTTG
66 GTTACCATTTAGCGACGCTAGGATAAAAACGCCGCTAAATGTTATTTTG
* *
68771190 TTTAAATCAAAACGGTGTCGTTTTATTGGATTTTT-AGTGGAATTTTCGGTAAAATGCCGAAATA
1 TTTAAA-CAAAACGGTGCCATTTTATTGGATTTTTCAGTGGAATTTTCGGTAAAATGCCGAAATA
* * *
68771254 GGTTTCCCTTTAGTGACGCTAGGATAAAAAC
65 GGTTACCATTTAGCGACGCTAGGATAAAAAC
68771285 ACTACAAAGG
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
114 56 0.68
115 26 0.32
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (114 bp):
TTTAAACAAAACGGTGCCATTTTATTGGATTTTTCAGTGGAATTTTCGGTAAAATGCCGAAATAG
GTTACCATTTAGCGACGCTAGGATAAAAACGCCGCTAAATGTTATTTTG
Found at i:68773904 original size:26 final size:26
Alignment explanation
Indices: 68773875--68773927 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
68773865 TCAAACATGC
68773875 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
68773901 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
68773927 A
1 A
68773928 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:68775447 original size:32 final size:32
Alignment explanation
Indices: 68775410--68775474 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
68775400 AATGCTTACC
68775410 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
68775442 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
68775474 A
1 A
68775475 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:68776295 original size:160 final size:160
Alignment explanation
Indices: 68776088--68776514 Score: 709
Period size: 160 Copynumber: 2.7 Consensus size: 160
68776078 TCAATCTTTG
* *
68776088 TTTTTTCATAGAACAAAGTTGACATTTCATCTTATACAGTTTTCAACTGTTTATACACAATTTTT
1 TTTTTTCATGGAACAAAGTTGACATTTCATCTTATACAGTTTTCAACTTTTTATACACAATTTTT
68776153 TAAATTATATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATAA-TTTTTT-CATGTG
66 TAAATTATATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATAATTTTTTTCCATGTG
*
68776216 A-TTTTCTGCATCATCAATTTTTATTTTTAT
131 ATTTTTC-GCATCATCAAATTTTATTTTTAT
* *
68776246 TTTTTTCCATGGATCAAAGTTGACATTTCCATCTTATACGGTTTTCAACTTTTTATACACAATTT
1 TTTTTT-CATGGAACAAAGTTGACATTT-CATCTTATACAGTTTTCAACTTTTTATACACAATTT
*
68776311 TTTAAATTATATAATTTAGATTAATTTATTTAAATATTATTTAATTAAAATAATTTTTTTTCCAT
64 TTTAAATTATATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATAA-TTTTTTTCCAT
**
68776376 GTGATTTTTCGCATTGTCAAATTTTATTTTTAT
128 GTGATTTTTCGCATCATCAAATTTTATTTTTAT
*
68776409 TTTTTT-ATGGAACAAAGTTGACATTTCGTCTTATACAGTTTTCAACTTTTTATACACAATTTTT
1 TTTTTTCATGGAACAAAGTTGACATTTCATCTTATACAGTTTTCAACTTTTTATACACAATTTTT
68776473 TAAATTATATAATTTGGATTAATTTATTTAAATATTATTTAA
66 TAAATTATATAATTTGGATTAATTTATTTAAATATTATTTAA
68776515 ATAATATTTA
Statistics
Matches: 251, Mismatches: 12, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
158 6 0.02
159 19 0.08
160 163 0.65
161 19 0.08
162 6 0.02
163 33 0.13
164 5 0.02
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (160 bp):
TTTTTTCATGGAACAAAGTTGACATTTCATCTTATACAGTTTTCAACTTTTTATACACAATTTTT
TAAATTATATAATTTGGATTAATTTATTTAAATATTATTTAATTAAAATAATTTTTTTCCATGTG
ATTTTTCGCATCATCAAATTTTATTTTTAT
Found at i:68776642 original size:9 final size:9
Alignment explanation
Indices: 68776550--68776638 Score: 76
Period size: 9 Copynumber: 10.1 Consensus size: 9
68776540 TATATCATAT
68776550 CATAACTTA
1 CATAACTTA
68776559 CATAACTTA
1 CATAACTTA
*
68776568 CAAAACTTA
1 CATAACTTA
68776577 CATAA--TA
1 CATAACTTA
*
68776584 CATAA-ATA
1 CATAACTTA
* * *
68776592 TATATCATA
1 CATAACTTA
68776601 TCATAACTTA
1 -CATAACTTA
*
68776611 CAAAACTTA
1 CATAACTTA
*
68776620 CAAAACTTA
1 CATAACTTA
*
68776629 CTTAACTTA
1 CATAACTTA
68776638 C
1 C
68776639 TTAATACATA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
7 7 0.10
8 5 0.07
9 49 0.73
10 6 0.09
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.31
Consensus pattern (9 bp):
CATAACTTA
Found at i:68782464 original size:19 final size:19
Alignment explanation
Indices: 68782428--68782472 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
68782418 TTAGATTTTC
*
68782428 TATTT-TTGGCTGGCTTTG
1 TATTTGTTGGCTGGATTTG
*
68782446 TATTTGTTGGTTGGATTTG
1 TATTTGTTGGCTGGATTTG
68782465 TATTTGTT
1 TATTTGTT
68782473 ATTTTTGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.09, C:0.04, G:0.27, T:0.60
Consensus pattern (19 bp):
TATTTGTTGGCTGGATTTG
Found at i:68782717 original size:43 final size:44
Alignment explanation
Indices: 68782648--68782836 Score: 233
Period size: 43 Copynumber: 4.4 Consensus size: 44
68782638 AAGTGCCACA
* *
68782648 AAAGGTCACGTTCTATAGTAGCGTTTGTAG-GTAAAGCGCCGCT
1 AAAGGTCACGTTCTATAGCAGCGTTTGTAGAGAAAAGCGCCGCT
* * * *
68782691 AAAGGTCATGTTCTATAACAGTGTTTGT-GAGAAAAGCGTCGCT
1 AAAGGTCACGTTCTATAGCAGCGTTTGTAGAGAAAAGCGCCGCT
* * * * *
68782734 AAAGGTCATGTTCTATTGCGGCATTTGT-CAGAAAAGCGCCGCT
1 AAAGGTCACGTTCTATAGCAGCGTTTGTAGAGAAAAGCGCCGCT
* *
68782777 AAAGGTCACGTTCTATAGCAGCGTTAGTAGAG-AAAGTGCCGCT
1 AAAGGTCACGTTCTATAGCAGCGTTTGTAGAGAAAAGCGCCGCT
68782820 AAAGGTCACGTTCTATA
1 AAAGGTCACGTTCTATA
68782837 ATGGCGGTTT
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
42 1 0.01
43 121 0.98
44 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (44 bp):
AAAGGTCACGTTCTATAGCAGCGTTTGTAGAGAAAAGCGCCGCT
Found at i:68783757 original size:12 final size:12
Alignment explanation
Indices: 68783740--68783768 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
68783730 AACTATTACC
68783740 TATGTAAAGCCT
1 TATGTAAAGCCT
68783752 TATGTAAAGCCT
1 TATGTAAAGCCT
68783764 TATGT
1 TATGT
68783769 GAAGGTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (12 bp):
TATGTAAAGCCT
Found at i:68784983 original size:20 final size:21
Alignment explanation
Indices: 68784958--68785000 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
68784948 TCATATCTGA
68784958 AATATATATAA-TTTTTTATT
1 AATATATATAAGTTTTTTATT
* *
68784978 AATATATGTAAGTTTTTTTTT
1 AATATATATAAGTTTTTTATT
68784999 AA
1 AA
68785001 GTTACAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (21 bp):
AATATATATAAGTTTTTTATT
Found at i:68787553 original size:16 final size:16
Alignment explanation
Indices: 68787532--68787563 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
68787522 TAAAAAATCC
68787532 TTAAAAATAATTATTT
1 TTAAAAATAATTATTT
68787548 TTAAAAATAATTATTT
1 TTAAAAATAATTATTT
68787564 AAAAAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAAAATAATTATTT
Found at i:68787569 original size:16 final size:16
Alignment explanation
Indices: 68787534--68787571 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
68787524 AAAAATCCTT
**
68787534 AAAAATAATTATTTTT
1 AAAAATAATTATTTAA
68787550 AAAAATAATTATTTAA
1 AAAAATAATTATTTAA
68787566 AAAAAT
1 AAAAAT
68787572 CACACCTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAAATAATTATTTAA
Found at i:68791385 original size:15 final size:15
Alignment explanation
Indices: 68791365--68791398 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
68791355 ACTATTATTT
*
68791365 TTTTTCTATTAATCC
1 TTTTTCTAGTAATCC
*
68791380 TTTTTCTAGTAATTC
1 TTTTTCTAGTAATCC
68791395 TTTT
1 TTTT
68791399 ATTTGCATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.03, T:0.65
Consensus pattern (15 bp):
TTTTTCTAGTAATCC
Found at i:68798831 original size:40 final size:40
Alignment explanation
Indices: 68798733--68798995 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
68798723 TCCTCGTTCA
* * * * *
68798733 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68798772 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68798812 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68798852 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68798892 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
68798932 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68798972 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68798996 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68806143 original size:40 final size:40
Alignment explanation
Indices: 68806045--68806307 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
68806035 TCCTCGTTCA
* * * * *
68806045 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68806084 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68806124 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
68806164 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68806204 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
68806244 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68806284 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68806308 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68809554 original size:6 final size:6
Alignment explanation
Indices: 68809525--68809640 Score: 58
Period size: 6 Copynumber: 18.8 Consensus size: 6
68809515 TATTAGAACT
* * * * *
68809525 AGAATC AAAATG AGAATT AGAATC AGAATC AG-GTGAC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * * *
68809574 AAAATC AGAATC AAAATT AG-GTGAC AGAATC AAAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC
68809624 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
68809641 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 67 0.82
7 8 0.10
8 3 0.04
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:68809567 original size:19 final size:19
Alignment explanation
Indices: 68809543--68809612 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
68809533 AATGAGAATT
*
68809543 AGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGGTGAC
**
68809562 AGAATCAAAATCA--AAATC
1 AGAATCAAAATCAGGTGA-C
*
68809580 AGAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGGTGAC
68809599 AGAATCAAAATCAG
1 AGAATCAAAATCAG
68809613 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.32
19 26 0.63
20 1 0.02
ACGTcount: A:0.51, C:0.14, G:0.17, T:0.17
Consensus pattern (19 bp):
AGAATCAAAATCAGGTGAC
Found at i:68809618 original size:37 final size:37
Alignment explanation
Indices: 68809525--68809618 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
68809515 TATTAGAACT
* * *
68809525 AGAATCAAAATGAGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAAATCAGGTGAC
* *
68809562 AGAATCAAAATCAAAATCAGAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAAATCAGGTGAC
*
68809599 AGAATCAAAATCAGTATCAG
1 AGAATCAAAATCAGAATCAG
68809619 GTAACAGAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAAAATCAGGTGAC
Found at i:68809637 original size:25 final size:25
Alignment explanation
Indices: 68809576--68809640 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
68809566 TCAAAATCAA
* * *
68809576 AATCAGAATCAAAATTAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
* *
68809601 AATCAAAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
68809626 AATCAGAATCAGAAT
1 AATCAGAATCAGAAT
68809641 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:68809798 original size:27 final size:26
Alignment explanation
Indices: 68809758--68809892 Score: 162
Period size: 27 Copynumber: 5.0 Consensus size: 26
68809748 AGCATGGCTT
* *
68809758 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
68809784 CCAGATACATATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
68809811 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
68809838 CCAGAAACAGATAATGTGGCATAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
* *
68809865 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
68809892 C
1 C
68809893 TTAACAGAAT
Statistics
Matches: 99, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
26 11 0.11
27 80 0.81
28 8 0.08
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:68810077 original size:22 final size:22
Alignment explanation
Indices: 68810049--68810115 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
68810039 AGGCAAATAC
*
68810049 GTTTGGCACATAGCCATAATCA
1 GTTTGGCACAAAGCCATAATCA
* * *
68810071 GTTTGGCATAGAGCCAT-ATGTA
1 GTTTGGCACAAAGCCATAAT-CA
* *
68810093 GGTTGGCGCAAAGCCATAATCA
1 GTTTGGCACAAAGCCATAATCA
68810115 G
1 G
68810116 AATAATTGGC
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (22 bp):
GTTTGGCACAAAGCCATAATCA
Found at i:68810541 original size:27 final size:27
Alignment explanation
Indices: 68810509--68810570 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
68810499 TTACCCCTCA
*
68810509 AAGGGTATCTCAGTAA-TTCTACCCTAC
1 AAGGGTATCTCA-AAATTTCTACCCTAC
* *
68810536 AGGGGTATTTCAAAATTTCTACCCTAC
1 AAGGGTATCTCAAAATTTCTACCCTAC
68810563 AAGGGTAT
1 AAGGGTAT
68810571 TTTGGTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (27 bp):
AAGGGTATCTCAAAATTTCTACCCTAC
Found at i:68810581 original size:28 final size:28
Alignment explanation
Indices: 68810491--68810581 Score: 73
Period size: 27 Copynumber: 3.3 Consensus size: 28
68810481 AGGGGTAAAA
*
68810491 TGGTAATTT-TACCCCT-CAAAGGGTATCT
1 TGGTAATTTCTA-CCCTAC-AAGGGTATTT
** *
68810519 CAGTAA-TTCTACCCTACAGGGGTA-TT
1 TGGTAATTTCTACCCTACAAGGGTATTT
***
68810545 TCAAAATTTCTACCCTACAAGGGTATTT
1 TGGTAATTTCTACCCTACAAGGGTATTT
68810573 TGGTAATTT
1 TGGTAATTT
68810582 TGTAAATTAA
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
26 3 0.06
27 29 0.62
28 15 0.32
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (28 bp):
TGGTAATTTCTACCCTACAAGGGTATTT
Found at i:68810593 original size:27 final size:27
Alignment explanation
Indices: 68810563--68810797 Score: 208
Period size: 27 Copynumber: 8.7 Consensus size: 27
68810553 TCTACCCTAC
** *
68810563 AAGGGTATTTTGGTAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
*** * **
68810590 AAGGGTAAAATGGTAATTCTGTAAA-T
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
68810616 CAGGGTACTTTGGTAATTTTAC-AAGT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * *
68810642 CGAGGGTATTTTAGTAATTTCACAAACT
1 -AAGGGTATTTTGGTAATTTTACAAACT
68810670 -AGGTGTATTTTGGTAATTTTACAAACT
1 AAGG-GTATTTTGGTAATTTTACAAACT
68810697 AAGGGTATTTTGGTAAATTTTACAAACT
1 AAGGGTATTTTGGT-AATTTTACAAACT
* *
68810725 AGGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
68810752 AGGGGTATTTCGGTAATTTTGCTAA-T
1 AAGGGTATTTTGGTAATTTTACAAACT
*
68810778 CGAGGGTATTTTGGTAATTT
1 -AAGGGTATTTTGGTAATTT
68810798 GGTAAACTAA
Statistics
Matches: 174, Mismatches: 27, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
25 2 0.01
26 20 0.11
27 120 0.69
28 32 0.18
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:68810733 original size:82 final size:82
Alignment explanation
Indices: 68810612--68810794 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 82
68810602 GTAATTCTGT
* * * * *
68810612 AAATC-AGGGTACTTTGGT-AATTTTACAAGTCGAGGGTATTTTAGTAATTTCACAAACTAGGTG
1 AAATCAAGGGTATTTTGGTAAATTTTACAACTAGAGGGTATTTTAGTAATTTCACAAACCAGGGG
*
68810675 TATTTTGGTAATTTTAC
66 TATTTCGGTAATTTTAC
* *
68810692 AAA-CTAAGGGTATTTTGGTAAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACCAGG
1 AAATC-AAGGGTATTTTGGTAAATTTTAC-AACTAGAGGGTATTTTAGTAATTTCACAAACCAGG
*
68810755 GGTATTTCGGTAATTTTGC
64 GGTATTTCGGTAATTTTAC
* *
68810774 TAATCGAGGGTATTTTGGTAA
1 AAATCAAGGGTATTTTGGTAA
68810795 TTTGGTAAAC
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.01
80 3 0.03
81 12 0.14
82 66 0.76
83 5 0.06
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (82 bp):
AAATCAAGGGTATTTTGGTAAATTTTACAACTAGAGGGTATTTTAGTAATTTCACAAACCAGGGG
TATTTCGGTAATTTTAC
Found at i:68812055 original size:38 final size:38
Alignment explanation
Indices: 68811964--68812115 Score: 142
Period size: 38 Copynumber: 3.9 Consensus size: 38
68811954 GAATCTAGTC
* * *
68811964 ACCAGCACAAAACCTGTGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGTGGGA-TTTAA-CCCGGATATAAT
* *
68812004 ACCAGTACAAAGCCTGTGGGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGTGGGATTTAACCCGGATATAAT
* **
68812042 ACCAGCACGAAGCCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGTGGGATTTAACCCGGATATAAT
* * * * * *
68812080 TCTAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGTGGG-ATTTAA-CCCGGATA
68812116 CACATCAAAT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
38 56 0.60
39 10 0.11
40 27 0.29
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGTGGGATTTAACCCGGATATAAT
Found at i:68817600 original size:29 final size:29
Alignment explanation
Indices: 68817567--68817626 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
68817557 ATAACCAAAC
*
68817567 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
68817596 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
68817625 CT
1 CT
68817627 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:68817619 original size:15 final size:15
Alignment explanation
Indices: 68817573--68817620 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
68817563 AAACCTACAA
*
68817573 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
68817588 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
68817602 AAACTTCATATCCAT
1 AAACTTCATATCCAT
68817617 AAAC
1 AAAC
68817621 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:68818991 original size:16 final size:17
Alignment explanation
Indices: 68818957--68819001 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
68818947 AAGACAAAGA
*
68818957 AAAAGAGATTGAGAGTG
1 AAAAGAGAATGAGAGTG
*
68818974 AAAAGA-AATGAGATTG
1 AAAAGAGAATGAGAGTG
68818990 AAAAGAGAATGA
1 AAAAGAGAATGA
68819002 AAAGAGTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.16
Consensus pattern (17 bp):
AAAAGAGAATGAGAGTG
Found at i:68821459 original size:14 final size:14
Alignment explanation
Indices: 68821440--68821484 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
68821430 AACTCATCTT
*
68821440 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
68821454 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
68821467 AATTTAATTTAATG
1 AGTTTAATTTAATG
68821481 AGTT
1 AGTT
68821485 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:68822493 original size:29 final size:29
Alignment explanation
Indices: 68822460--68822519 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
68822450 ATAACCAAAC
*
68822460 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
68822489 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
68822518 CT
1 CT
68822520 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:68822512 original size:15 final size:15
Alignment explanation
Indices: 68822466--68822513 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
68822456 AAACCTACAA
*
68822466 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
68822481 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
68822495 AAACTTCATATCCAT
1 AAACTTCATATCCAT
68822510 AAAC
1 AAAC
68822514 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:68825142 original size:38 final size:38
Alignment explanation
Indices: 68825061--68825234 Score: 197
Period size: 38 Copynumber: 4.5 Consensus size: 38
68825051 GAATCTAGTC
* * *
68825061 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* *
68825101 ACCAGCACTAGGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
** *
68825139 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* * *
68825177 GCCAGCACGAAGCCTACGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* *
68825215 TCCAGCA-TATAGCCTGCGGG
1 ACCAGCACGA-AGCCTGCGGG
68825235 TCTTTAAGCC
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 1 0.01
38 93 0.79
39 5 0.04
40 18 0.15
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:68825197 original size:76 final size:78
Alignment explanation
Indices: 68825061--68825241 Score: 222
Period size: 76 Copynumber: 2.3 Consensus size: 78
68825051 GAATCTAGTC
* * * * *
68825061 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTGCGGGACTTTAACCTCAGATATAATACCAGCACGAAGCCTACGGGATTTA
68825126 ACCCAGATATAAT
66 ACCCAGATATAAT
* * * *
68825139 ACCAGCACGAAGCCTGCGGGA-TTTAACCT-GGATATATTGCCAGCACGAAGCCTACGGGATTTA
1 ACCAGCACAAAGCCTGCGGGACTTTAACCTCAGATATAATACCAGCACGAAGCCTACGGGATTTA
*
68825202 ACCCGGATATAAT
66 ACCCAGATATAAT
* * * *
68825215 TCCAGCATATAGCCTGCGGGTCTTTAA
1 ACCAGCACAAAGCCTGCGGGACTTTAA
68825242 GCCCGGATAC
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
76 56 0.64
77 12 0.14
78 19 0.22
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (78 bp):
ACCAGCACAAAGCCTGCGGGACTTTAACCTCAGATATAATACCAGCACGAAGCCTACGGGATTTA
ACCCAGATATAAT
Found at i:68830837 original size:17 final size:18
Alignment explanation
Indices: 68830804--68830838 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
68830794 TGTGTGGACT
68830804 ACCCATGTGGTCCCACAC
1 ACCCATGTGGTCCCACAC
*
68830822 ACCCGTGTGG-CCCACAC
1 ACCCATGTGGTCCCACAC
68830839 GGCCCAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.46, G:0.20, T:0.14
Consensus pattern (18 bp):
ACCCATGTGGTCCCACAC
Found at i:68831253 original size:14 final size:15
Alignment explanation
Indices: 68831221--68831266 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
68831211 TGTATTTACT
*
68831221 TATTATTTA-AGTAAA
1 TATTATTTATA-TTAA
68831236 TATTA-TTATATTAA
1 TATTATTTATATTAA
68831250 TATTATTTTATATTAA
1 TATTA-TTTATATTAA
68831266 T
1 T
68831267 TAAATAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 11 0.41
15 6 0.22
16 10 0.37
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TATTATTTATATTAA
Found at i:68832961 original size:18 final size:18
Alignment explanation
Indices: 68832911--68833023 Score: 93
Period size: 18 Copynumber: 6.3 Consensus size: 18
68832901 ATAAAGGTAT
* * *
68832911 TGAATAACTGACTGCTAT
1 TGAATAAATGACTGTTAC
* *
68832929 TGAATAATTAACTGTTAC
1 TGAATAAATGACTGTTAC
68832947 TGAATAAATGACTGTTAC
1 TGAATAAATGACTGTTAC
* * * * * *
68832965 TAAATGACTAATTATTAC
1 TGAATAAATGACTGTTAC
* *
68832983 TGAATTATTGACTGTTAC
1 TGAATAAATGACTGTTAC
68833001 TGAATAAATGA-TCGTTAC
1 TGAATAAATGACT-GTTAC
68833019 TGAAT
1 TGAAT
68833024 GATATTGTTA
Statistics
Matches: 74, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
17 1 0.01
18 73 0.99
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (18 bp):
TGAATAAATGACTGTTAC
Found at i:68842243 original size:15 final size:15
Alignment explanation
Indices: 68842203--68842243 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
68842193 AATAATAATT
*
68842203 ATAAATAAAAATATA
1 ATAAATAAAAGTATA
68842218 AT-AATATAAAGTATA
1 ATAAATA-AAAGTATA
68842233 ATAAATAAAAG
1 ATAAATAAAAG
68842244 ACAAGTGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
ATAAATAAAAGTATA
Found at i:68842294 original size:19 final size:19
Alignment explanation
Indices: 68842266--68842304 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
68842256 TGTTATATAG
*
68842266 ATACATATGTACT-AATAAT
1 ATACACATGTA-TAAATAAT
68842285 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
68842304 A
1 A
68842305 AATAAGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:68842706 original size:19 final size:19
Alignment explanation
Indices: 68842682--68842719 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68842672 GGTATAAATA
*
68842682 ATTTAT-TGAATTTATGTGG
1 ATTTATGTG-ATTGATGTGG
68842701 ATTTATGTGATTGATGTGG
1 ATTTATGTGATTGATGTGG
68842720 GAATTGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (19 bp):
ATTTATGTGATTGATGTGG
Found at i:68843114 original size:6 final size:6
Alignment explanation
Indices: 68843100--68843144 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
68843090 TGTGTACCGC
* *
68843100 TACTAT TACTGT TACTGT TACTGT TACTGT TACTGT TACCGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
68843145 GGTGTATTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (6 bp):
TACTGT
Found at i:68843276 original size:18 final size:18
Alignment explanation
Indices: 68843253--68843352 Score: 128
Period size: 18 Copynumber: 5.6 Consensus size: 18
68843243 AAAATAAAGG
* *
68843253 TACTGAATAACTGACTGC
1 TACTGAATAAATGACTGT
* *
68843271 TACTGAATAATTAACTGT
1 TACTGAATAAATGACTGT
*
68843289 TACTAAATAAATGACTGT
1 TACTGAATAAATGACTGT
*
68843307 TACTGAATAAATGACTAT
1 TACTGAATAAATGACTGT
*
68843325 TACTGAATAAATGACTAT
1 TACTGAATAAATGACTGT
*
68843343 TACTAAATAA
1 TACTGAATAA
68843353 CTGATTAATA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 73 1.00
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (18 bp):
TACTGAATAAATGACTGT
Found at i:68843346 original size:36 final size:36
Alignment explanation
Indices: 68843253--68843366 Score: 129
Period size: 36 Copynumber: 3.2 Consensus size: 36
68843243 AAAATAAAGG
* * * * *
68843253 TACTGAATAACTGACTGCTACTGAATAATTAACTGT
1 TACTGAATAAATGACTGTTACTGAATAAATGACTAT
*
68843289 TACTAAATAAATGACTGTTACTGAATAAATGACTAT
1 TACTGAATAAATGACTGTTACTGAATAAATGACTAT
* * * * *
68843325 TACTGAATAAATGACTATTACTAAATAACTGATTAA
1 TACTGAATAAATGACTGTTACTGAATAAATGACTAT
68843361 TACTGA
1 TACTGA
68843367 TGACTGACTG
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 66 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (36 bp):
TACTGAATAAATGACTGTTACTGAATAAATGACTAT
Found at i:68843365 original size:54 final size:54
Alignment explanation
Indices: 68843253--68843366 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
68843243 AAAATAAAGG
* * * * **
68843253 TACTGAATAACTGACTGCTACTGAATAATTAACTGTTACTAAATAAATGACTGT
1 TACTGAATAAATGACTACTACTGAATAAATAACTATTACTAAATAAATGACTAA
* * * *
68843307 TACTGAATAAATGACTATTACTGAATAAATGACTATTACTAAATAACTGATTAA
1 TACTGAATAAATGACTACTACTGAATAAATAACTATTACTAAATAAATGACTAA
68843361 TACTGA
1 TACTGA
68843367 TGACTGACTG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (54 bp):
TACTGAATAAATGACTACTACTGAATAAATAACTATTACTAAATAAATGACTAA
Found at i:68844256 original size:22 final size:22
Alignment explanation
Indices: 68844225--68844270 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
68844215 GCGTGTCCCA
*
68844225 AGCCGTACGGACATGTTAAACT
1 AGCCGCACGGACATGTTAAACT
*
68844247 AGCCGCACGGGCATGTTAAACT
1 AGCCGCACGGACATGTTAAACT
68844269 AG
1 AG
68844271 ACACACAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.20
Consensus pattern (22 bp):
AGCCGCACGGACATGTTAAACT
Found at i:68848172 original size:15 final size:15
Alignment explanation
Indices: 68848132--68848172 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
68848122 AATAATAATT
*
68848132 ATAAATAAAAATATA
1 ATAAATAAAAGTATA
68848147 AT-AATATAAAGTATA
1 ATAAATA-AAAGTATA
68848162 ATAAATAAAAG
1 ATAAATAAAAG
68848173 ACAAGTGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
ATAAATAAAAGTATA
Found at i:68848223 original size:19 final size:19
Alignment explanation
Indices: 68848195--68848233 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
68848185 TGATATATGG
*
68848195 ATACATATGTACT-AATAAT
1 ATACACATGTA-TAAATAAT
68848214 ATACACATGTATAAATAAT
1 ATACACATGTATAAATAAT
68848233 A
1 A
68848234 AATAAGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (19 bp):
ATACACATGTATAAATAAT
Found at i:68848273 original size:22 final size:22
Alignment explanation
Indices: 68848207--68848273 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 22
68848197 ACATATGTAC
*
68848207 TAATAATATACACATGTATAA-A-
1 TAATAATATA-ATAT-TATAATAG
*
68848229 TAATAA-ATAAGTATT-TATTTAG
1 TAATAATATAA-TATTATA-ATAG
68848251 TAATAATATAATATTATAATAG
1 TAATAATATAATATTATAATAG
68848273 T
1 T
68848274 TAAAAAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 12
0.71 0.06 0.24
Matches are distributed among these distances:
19 2 0.06
20 2 0.06
21 6 0.17
22 20 0.56
23 6 0.17
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (22 bp):
TAATAATATAATATTATAATAG
Found at i:68848292 original size:9 final size:9
Alignment explanation
Indices: 68848278--68848318 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
68848268 AATAGTTAAA
*
68848278 AAAAGAAAC
1 AAAAGAAAG
68848287 AAAAGAAAG
1 AAAAGAAAG
68848296 AAAAGAAAG
1 AAAAGAAAG
68848305 AAAAAGAATAG
1 -AAAAGAA-AG
68848316 AAA
1 AAA
68848319 GAACAGAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 17 0.59
10 10 0.34
11 2 0.07
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.02
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:68848312 original size:15 final size:15
Alignment explanation
Indices: 68848292--68848321 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68848282 GAAACAAAAG
68848292 AAAGAAAAGAAAGAA
1 AAAGAAAAGAAAGAA
*
68848307 AAAGAATAGAAAGAA
1 AAAGAAAAGAAAGAA
68848322 CAGAACATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAGAAAAGAAAGAA
Found at i:68848632 original size:19 final size:19
Alignment explanation
Indices: 68848608--68848645 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68848598 GGTATGAATA
*
68848608 ATTTAT-TGAATTTATGTGG
1 ATTTATGTG-ATTGATGTGG
68848627 ATTTATGTGATTGATGTGG
1 ATTTATGTGATTGATGTGG
68848646 GAATTGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (19 bp):
ATTTATGTGATTGATGTGG
Found at i:68848802 original size:17 final size:18
Alignment explanation
Indices: 68848780--68848816 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
68848770 TTTGTAAATA
68848780 AATTAA-AAA-TGATACTG
1 AATTAAGAAAGTGA-ACTG
68848797 AATTAAGAAAGTGAACTG
1 AATTAAGAAAGTGAACTG
68848815 AA
1 AA
68848817 AACCCTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 9 0.50
19 3 0.17
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.24
Consensus pattern (18 bp):
AATTAAGAAAGTGAACTG
Found at i:68849010 original size:51 final size:52
Alignment explanation
Indices: 68848926--68849043 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 52
68848916 AAGTGTCGAC
* * *
68848926 TACTGTTACTGTTTCGGATTCGTTCCGAAGAGGTACTC-TGTACCTG-ATTGT
1 TACTGTTACTGTTCCGAATTCGTTCCGAAGAGGTACTCGTGTACC-GCACTGT
* * *
68848977 TACTGTTACTGTTCCGAATTTGTTTCGATGAGGTACTCTGTGTACCGCTACTGT
1 TACTGTTACTGTTCCGAATTCGTTCCGAAGAGGTACTC-GTGTACCGC-ACTGT
68849031 TACTGTTACTGTT
1 TACTGTTACTGTT
68849044 ACCGTTACGG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 33 0.58
52 1 0.02
53 6 0.11
54 17 0.30
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (52 bp):
TACTGTTACTGTTCCGAATTCGTTCCGAAGAGGTACTCGTGTACCGCACTGT
Found at i:68849183 original size:18 final size:18
Alignment explanation
Indices: 68849160--68849255 Score: 111
Period size: 18 Copynumber: 5.3 Consensus size: 18
68849150 AAAATAAAGG
*
68849160 TACTGAATAACTGACTAT
1 TACTGAATAAATGACTAT
* * *
68849178 TACTGAATAATTAACTGT
1 TACTGAATAAATGACTAT
* *
68849196 TACTAAATAAATGACTGT
1 TACTGAATAAATGACTAT
68849214 TACTGAATAAATGACTAT
1 TACTGAATAAATGACTAT
* * *
68849232 TACTGAATAACTGATTAA
1 TACTGAATAAATGACTAT
68849250 TACTGA
1 TACTGA
68849256 TGACTGACCG
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:68849447 original size:28 final size:28
Alignment explanation
Indices: 68849416--68849469 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
68849406 ATTAAAGAAT
* *
68849416 AATTGATTGTTATTGAACGATATTGATA
1 AATTGATTGATATTGAAAGATATTGATA
68849444 AATTGATTGATATTGAAAGATATTGA
1 AATTGATTGATATTGAAAGATATTGA
68849470 CTGATATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.19, T:0.41
Consensus pattern (28 bp):
AATTGATTGATATTGAAAGATATTGATA
Found at i:68853484 original size:25 final size:25
Alignment explanation
Indices: 68853450--68853500 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
68853440 TTCCTTATAA
* **
68853450 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
68853475 ACTTTAAATTAAGAATTAGATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
68853500 A
1 A
68853501 TTTTCCTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTAGATTAGG
Found at i:68858103 original size:25 final size:25
Alignment explanation
Indices: 68858069--68858119 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
68858059 TTCCTTATAA
**
68858069 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
68858094 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
68858119 A
1 A
68858120 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:68858118 original size:12 final size:12
Alignment explanation
Indices: 68858072--68858119 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
68858062 CTTATAAACT
68858072 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
68858084 TTCTATTAGGACT
1 TTAAATTAGGA-A
68858097 TTAAATTAGGAA
1 TTAAATTAGGAA
*
68858109 TTAGATTAGGA
1 TTAAATTAGGA
68858120 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:68863215 original size:9 final size:10
Alignment explanation
Indices: 68863180--68863228 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
68863170 GATACACCCC
*
68863180 ATAATTATTA
1 ATAATTTTTA
*
68863190 GTAATTTTTA
1 ATAATTTTTA
68863200 ATAATTTTTA
1 ATAATTTTTA
*
68863210 AT-ATTTTCTC
1 ATAATTTT-TA
68863220 ATAATTTTT
1 ATAATTTTT
68863229 TTATGCGATC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 5 0.15
10 23 0.70
11 5 0.15
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:68863309 original size:19 final size:21
Alignment explanation
Indices: 68863259--68863310 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
68863249 ATATGATTTG
68863259 AAAATAAAT-TTTTGACTAGA
1 AAAATAAATATTTTGACTAGA
* *
68863279 AAAATCAA-ATTTTGA-TA-T
1 AAAATAAATATTTTGACTAGA
68863297 AAAATAAATATTTT
1 AAAATAAATATTTT
68863311 TGCATATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 7 0.26
19 7 0.26
20 13 0.48
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (21 bp):
AAAATAAATATTTTGACTAGA
Found at i:68863311 original size:20 final size:18
Alignment explanation
Indices: 68863288--68863335 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
68863278 AAAAATCAAA
68863288 TTTTGATATAAAATAAATAT
1 TTTTGATAT-AAATAAA-AT
*
68863308 TTTTGCATATTAATAAAAT
1 TTTTG-ATATAAATAAAAT
*
68863327 TTTTTATAT
1 TTTTGATAT
68863336 CTACAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.16
19 6 0.24
20 11 0.44
21 4 0.16
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (18 bp):
TTTTGATATAAATAAAAT
Found at i:68863365 original size:4 final size:4
Alignment explanation
Indices: 68863356--68863385 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
68863346 AATTTAGAAT
68863356 TAAA TAAA TAAA TAAA TAAA TAAA TCAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T-AAA T
68863386 TTATAAGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:68863956 original size:40 final size:40
Alignment explanation
Indices: 68863861--68863960 Score: 107
Period size: 40 Copynumber: 2.5 Consensus size: 40
68863851 TGGAAGTACT
68863861 AAATGAGAAAATA-CAAAAAATATAAGAAAGTACCAAAAA
1 AAATGAGAAAATACCAAAAAATATAAGAAAGTACCAAAAA
** ** * *
68863900 AAATGACTAACCACCAAAAATTATGAAGGAA-TA-CAAAAA
1 AAATGAGAAAATACCAAAAAATAT-AAGAAAGTACCAAAAA
68863939 GAAATGAGAAAATACCAAAAAA
1 -AAATGAGAAAATACCAAAAAA
68863961 ACCCGAGCAC
Statistics
Matches: 47, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
39 15 0.32
40 27 0.57
41 5 0.11
ACGTcount: A:0.65, C:0.11, G:0.11, T:0.13
Consensus pattern (40 bp):
AAATGAGAAAATACCAAAAAATATAAGAAAGTACCAAAAA
Found at i:68864072 original size:20 final size:21
Alignment explanation
Indices: 68864034--68864075 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
68864024 AAAAGAAAAT
*
68864034 AGGAAATATAAAAATATTATG
1 AGGAAATAGAAAAATATTATG
68864055 AGGAAATAGAAAAA-ATTATG
1 AGGAAATAGAAAAATATTATG
68864075 A
1 A
68864076 TGAAGTGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.24
Consensus pattern (21 bp):
AGGAAATAGAAAAATATTATG
Found at i:68864119 original size:19 final size:19
Alignment explanation
Indices: 68864097--68864146 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
68864087 AAATCGTAGC
68864097 AAGTACTAAAAACATGAGG
1 AAGTACTAAAAACATGAGG
* *
68864116 AAGTACAAAAAAATATGAGG
1 AAGTAC-TAAAAACATGAGG
*
68864136 AATTA-TAAAAA
1 AAGTACTAAAAA
68864147 ATTATAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 5 0.19
19 6 0.23
20 15 0.58
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (19 bp):
AAGTACTAAAAACATGAGG
Found at i:68864147 original size:19 final size:20
Alignment explanation
Indices: 68864104--68864190 Score: 84
Period size: 20 Copynumber: 4.3 Consensus size: 20
68864094 AGCAAGTACT
*
68864104 AAAAACATGAGGAAGTACAA
1 AAAAATATGAGGAAGTACAA
* *
68864124 AAAAATATGAGGAATTATAA
1 AAAAATATGAGGAAGTACAA
* * *
68864144 AAAATTATAAGGAAATACAA
1 AAAAATATGAGGAAGTACAA
* **
68864164 AACAATACAAGGAAGTACCAA
1 AAAAATATGAGGAAGTA-CAA
68864185 AAAAAT
1 AAAAAT
68864191 TTGTAACACC
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
20 46 0.85
21 8 0.15
ACGTcount: A:0.62, C:0.08, G:0.14, T:0.16
Consensus pattern (20 bp):
AAAAATATGAGGAAGTACAA
Found at i:68866021 original size:42 final size:42
Alignment explanation
Indices: 68865962--68866046 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
68865952 TGCCATAGAT
68865962 TCGAAAGTTCACTTATAAAGATACCGAGGACAGTCGATAGTG
1 TCGAAAGTTCACTTATAAAGATACCGAGGACAGTCGATAGTG
68866004 TCGAAAGTTCACTTATAAAGATACCGAGGACAGTCGATAGTG
1 TCGAAAGTTCACTTATAAAGATACCGAGGACAGTCGATAGTG
68866046 T
1 T
68866047 GGTGGACTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (42 bp):
TCGAAAGTTCACTTATAAAGATACCGAGGACAGTCGATAGTG
Found at i:68866441 original size:29 final size:29
Alignment explanation
Indices: 68866405--68866464 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
68866395 ATACACTTAT
* *
68866405 CATATTGCCGACTATACATATTGTTTTAC
1 CATATTGCCGAATATACATATTGCTTTAC
68866434 CATATTGCCGAATATACATATTGCTTTAC
1 CATATTGCCGAATATACATATTGCTTTAC
68866463 CA
1 CA
68866465 AAGTATCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (29 bp):
CATATTGCCGAATATACATATTGCTTTAC
Found at i:68867506 original size:57 final size:57
Alignment explanation
Indices: 68867442--68867558 Score: 234
Period size: 57 Copynumber: 2.1 Consensus size: 57
68867432 TGAATATAAA
68867442 CATTTTAATTACATGCTTATTCATTATCCACTACTATTTGTACCACTCAAAACATCC
1 CATTTTAATTACATGCTTATTCATTATCCACTACTATTTGTACCACTCAAAACATCC
68867499 CATTTTAATTACATGCTTATTCATTATCCACTACTATTTGTACCACTCAAAACATCC
1 CATTTTAATTACATGCTTATTCATTATCCACTACTATTTGTACCACTCAAAACATCC
68867556 CAT
1 CAT
68867559 AAGCACATGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.38
Consensus pattern (57 bp):
CATTTTAATTACATGCTTATTCATTATCCACTACTATTTGTACCACTCAAAACATCC
Found at i:68871678 original size:25 final size:23
Alignment explanation
Indices: 68871641--68871687 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
68871631 TTATTATAAC
*
68871641 ATATATTAACTTATTATTTAATT
1 ATATATTAACTTATTATATAATT
68871664 ATATATTTAACCTTATTATATAAT
1 ATATA-TTAA-CTTATTATATAAT
68871688 ATGATTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 4 0.19
25 12 0.57
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.53
Consensus pattern (23 bp):
ATATATTAACTTATTATATAATT
Found at i:68872138 original size:27 final size:29
Alignment explanation
Indices: 68872107--68872171 Score: 71
Period size: 33 Copynumber: 2.2 Consensus size: 29
68872097 CAACCAACAA
68872107 TTCAAT-CA-CATTGTCTTATTCCCAGAC
1 TTCAATACAGCATTGTCTTATTCCCAGAC
*
68872134 TTCAAAAATAATAGCATTGTCTTATTCCCAGAC
1 TTC---AAT-ACAGCATTGTCTTATTCCCAGAC
68872167 TTCAA
1 TTCAA
68872172 AAATAATAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
27 3 0.10
30 5 0.16
32 1 0.03
33 22 0.71
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (29 bp):
TTCAATACAGCATTGTCTTATTCCCAGAC
Found at i:68872157 original size:33 final size:33
Alignment explanation
Indices: 68872115--68872182 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
68872105 AATTCAATCA
68872115 CATTGTCTTATTCCCAGACTTCAAAAATAATAG
1 CATTGTCTTATTCCCAGACTTCAAAAATAATAG
68872148 CATTGTCTTATTCCCAGACTTCAAAAATAATAG
1 CATTGTCTTATTCCCAGACTTCAAAAATAATAG
68872181 CA
1 CA
68872183 ATAATATCAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (33 bp):
CATTGTCTTATTCCCAGACTTCAAAAATAATAG
Found at i:68874825 original size:713 final size:712
Alignment explanation
Indices: 68872148--68874904 Score: 3285
Period size: 713 Copynumber: 3.9 Consensus size: 712
68872138 AAAATAATAG
* *
68872148 CATTGTCTTATTCCCAGACTTCAAAAATAATAGCAATAATATCACCTACTCAAACACTAAGCCTA
1 CATTGTCTTATTCCCACAGTTCAAAAATAATAGCAATAATATCACCTACTCAAACACTAAGCCTA
* * * * *
68872213 ACTTGGATCACTTCCTTGGAATTCCGCACCGCCTACACCGG-AGCACTTACTATCTACAAAGGTT
66 ACTTGGATCACTTCCTTGGAATTCCACACCGCCCACACCGGAAACACTAACTATCTGCAAAGGTT
* * * *
68872277 TAGAAAAGAGTGTGTGAGTTTAAAAAAGCTCAGTGAATGATC-AGGAAAAAAAATACCAATAAAT
131 TAGAAAAGAGTGTGTGAGCTTAAACAAGCTCAGTGAATGATCGA-G-AAAAAACTACCAATAAAC
* * ** * *
68872341 AAGATAT-AGTACATTAAATGAGAACATCTAAATAGGTATTGATATTTCTTAAAATAGGTATCTA
194 ATGATATCA-TACATTAAATGAGAACATCTAAATGGGTATCAATATTTCTCAAAATAGGTATCGA
* * * * * * * ** *
68872405 TACCGTTTGGAAAATTGGTA-CATTTTAACATTCTGT-TTTTCTTCAAAATTTATAACTTAGCAA
258 TACAGTTTGGAAAATCGATACCTTTTTAACATTTTATCTTTTATTCAAAATCCA-AAC-CA-CAA
* * * * *
68872468 TTTATCGATACAATTCAAAACTATCCATATTTTTACCCTGAGTATCCATACTTGAGAAATGGTAT
320 TTTATCGATACAATTCAAAATTATCTATATTTTTACCC-GAGTATCGATACTCGAGAATTGGTAT
* * * ** * * *
68872533 CAATACCAAAATGAACTATTGTTTCAC-GCA-AATTGGTTTCAACTTAGAAGTATCGATACATAT
384 CAATACCAAAAAGAGCTACTGTTTC-CTGCACAATTCATTTCAACTCAAAAGTATCAATACATAT
* * * * * *
68872596 G-CCTCGATTACCAAAACCTTTGTATAATTCTACAAAAATTCAAGCAAAACAGGGCAATCCGCAT
448 GCCCT-GATTATCAATACCTCTATATAATTCTACAAAAATTCAAGCAAAACAGGGCATTCCACAT
* *
68872660 ACTGAATCACATACCACTTCAACATGCATCCATAACTTCAATATTCAACATCAAAATGTCCATAT
512 ACTCAATCACATAACACTTCAACATGCATCCATAACTTCAATATTCAACATCAAAATGTCCATAT
* * * *
68872725 TTGAAGTCTATAGCAATATGAATAATTTCAACCAAGCAAACCAATAAACTAATAACAACGTCCGC
577 TTGAAGTCCATAGCAATATCAAAAATTTCAACCAAGCAAACCAATAAACTAATAACAACGTCCAC
* * * *
68872790 GAACCTATGAGTATTAAAATCAAAATAATCACTTAAAACATTAAGATAATAATCAACCAACAATT
642 GAACCTAAGAGTATTAAAATCAAAATAATCATTTAAAACATCAAGATAATAATCAACCAAAAATT
*
68872855 CAACCA
707 CTACCA
* * * *
68872861 CATTGTCTTATTCCCAAAGTTCAAAAATAATAGTAATGATATCACCTACTCAAATACTAAGCCTA
1 CATTGTCTTATTCCCACAGTTCAAAAATAATAGCAATAATATCACCTACTCAAACACTAAGCCTA
* **
68872926 ACTTGGATCAGTTCAC-TGGAATTCTGCACCGCCCACACCGGAAACACTAACTATCTGCAAAGGT
66 ACTTGGATCACTTC-CTTGGAATTCCACACCGCCCACACCGGAAACACTAACTATCTGCAAAGGT
* *
68872990 TTAGAAAAGAGTGTGTGAGCTTAAACAAGCTCAGTGAATGATCGA-AAAAAATTACTAATAAACA
130 TTAGAAAAGAGTGTGTGAGCTTAAACAAGCTCAGTGAATGATCGAGAAAAAACTACCAATAAACA
* * * * *
68873054 TGATATCATACATTACATGAGAACAACTAAATGGGTATTAATATTTCTGAAAATAGGTATTGATA
195 TGATATCATACATTAAATGAGAACATCTAAATGGGTATCAATATTTCTCAAAATAGGTATCGATA
** * *
68873119 CCA-TTTGGAAAATAAATACCTTTTTAACA-TTCA-GTTTTATT-----T-C--A--A-AA-TTA
260 -CAGTTTGGAAAATCGATACCTTTTTAACATTTTATCTTTTATTCAAAATCCAAACCACAATTTA
* * *
68873169 TTGATACAATTCAAAATTATCTAAATTTTTAACCTGAGTATCGATACTCGAGAATTGGTATCAAT
324 TCGATACAATTCAAAATTATCTATATTTTT-ACCCGAGTATCGATACTCGAGAATTGGTATCAAT
* * * * * * *
68873234 ACCAAAATA-AGCAACTGTTTCCTACAC-ATTTATTCCAACTCAGAAGTATCGATACATATGCCT
388 ACCAAAA-AGAGCTACTGTTTCCTGCACAATTCATTTCAACTCAAAAGTATCAATACATATGCCC
* * * * **
68873297 TGTTTATCGATAGCTCTATATAATTCTACAAAAATTTAAGCAAAACAGGGCATTCCACCGACTCA
452 TGATTATCAATACCTCTATATAATTCTACAAAAATTCAAGCAAAACAGGGCATTCCACATACTCA
* * * * * *
68873362 ATCATACACCACTTCAAAATGCATCCATAACTTCAATAATCAACATCAAAATTTCCATATTTGCA
517 ATCACATAACACTTCAACATGCATCCATAACTTCAATATTCAACATCAAAATGTCCATATTTG-A
* * * * * * *
68873427 A-TCCATATCAATATTAATAATTTCAACCAAGCAAAACAATAAACTAATAACAACCTCTAGGAAC
581 AGTCCATAGCAATATCAAAAATTTCAACCAAGCAAACCAATAAACTAATAACAACGTCCACGAAC
* * *
68873491 TTAAGAG---TAATATCAAAATAATCATTTAAAACATCATA-ACAATAATCAACCAACAAA-TCT
646 CTAAGAGTATTAAAATCAAAATAATCATTTAAAACATCA-AGATAATAATCAACCAA-AAATTCT
68873551 ACCA
709 ACCA
* *
68873555 TATTGTCTTATTCCTC-CAGTTCAAAAATAATAGCAATAAAATCACCTACTCAAACACTAAGCCT
1 CATTGTCTTATTCC-CACAGTTCAAAAATAATAGCAATAATATCACCTACTCAAACACTAAGCCT
* *
68873619 AACTTGGATCACTTCCTTGGAATTCCTCACCGCCCACACCGGAAACACTAACTATCTGCAAATGT
65 AACTTGGATCACTTCCTTGGAATTCCACACCGCCCACACCGGAAACACTAACTATCTGCAAAGGT
* * * * * *
68873684 TCAAAAAAGAGTTTGTGAGCTTAAACAAGCTCGGTGAATGATCGGGAAAAAACTACCGATAAACA
130 TTAGAAAAGAGTGTGTGAGCTTAAACAAGCTCAGTGAATGATCGAGAAAAAACTACCAATAAACA
* * * * * *
68873749 TAATATCATACATTAAATAAGAACATCTAAATGGGAATCGATATTT-TCCAAAATGGGTATCAAT
195 TGATATCATACATTAAATGAGAACATCTAAATGGGTATCAATATTTCT-CAAAATAGGTATCGAT
* ** * * *
68873813 GCAGTTTCAAAAATCGAAACCTTTTTAACATTCTAATC--TTCTTCAAAATCCAAAACCCAACAA
259 ACAGTTTGGAAAATCGATACCTTTTTAACATT-TTATCTTTTATTCAAAATCC-AAA-CC-ACAA
* * * *
68873876 TTTATCGATACAATTCAAAAGTATGTATATTTTTACCCCGAGTAGCGATACTCGAGAACTGGTAT
320 TTTATCGATACAATTCAAAATTATCTATATTTTTA-CCCGAGTATCGATACTCGAGAATTGGTAT
* * * *
68873941 TAATACCAAAATGAGCTACTATTTCCTGCAC-ATTCATTTTAACTCAAAAGTATCAATACATATG
384 CAATACCAAAAAGAGCTACTGTTTCCTGCACAATTCATTTCAACTCAAAAGTATCAATACATATG
* * * * * * * * * *
68874005 ACGTGATTATCAATACCTTTGTATAATTATGCAAAAATTCCAGCAAAACATGGAATTCCACAAAC
449 CCCTGATTATCAATACCTCTATATAATTCTACAAAAATTCAAGCAAAACAGGGCATTCCACATAC
* * *
68874070 TCAATCACATACCACTTCAATATGCATCCATAACTTCAATATTCAACATCAAAATGTCTATATTT
514 TCAATCACATAACACTTCAACATGCATCCATAACTTCAATATTCAACATCAAAATGTCCATATTT
* * *
68874135 GCAGTCCATAGCAATATCAAAAATTTCAACCAAGCAAACCAATGAACTAATAACAACGTCCATGA
579 GAAGTCCATAGCAATATCAAAAATTTCAACCAAGCAAACCAATAAACTAATAACAACGTCCACGA
* *
68874200 ACCTAAGAGTATTAAAATCAAAATAATTATTTAAAACATCAAGATAATAACCAACCAAAAATTCT
644 ACCTAAGAGTATTAAAATCAAAATAATCATTTAAAACATCAAGATAATAATCAACCAAAAATTCT
68874265 ACCA
709 ACCA
* * * *
68874269 CATTGTCTCATTCCCACAGTTAAAAAATAATAGCAATAATATAACCTACTCAAACACAAAGCCTA
1 CATTGTCTTATTCCCACAGTTCAAAAATAATAGCAATAATATCACCTACTCAAACACTAAGCCTA
* * * * * *
68874334 ACTTGGACCACTTCCTTGGAATTTCACACTGCCCATACTGGAAACACTAACTATATGCAAAGGTT
66 ACTTGGATCACTTCCTTGGAATTCCACACCGCCCACACCGGAAACACTAACTATCTGCAAAGGTT
* *
68874399 TAGAAAAGAGCGTGTAAGCTTTAAACAAGCTCAGTGAATGATCGAGAAAAAACTACCAATAAACA
131 TAGAAAAGAGTGTGTGAGC-TTAAACAAGCTCAGTGAATGATCGAGAAAAAACTACCAATAAACA
** *
68874464 TGATATCATACATTACTTGAGAATATCTAAAT-GGTATCAATATTTCTCAAAATAGGTATCGATA
195 TGATATCATACATTAAATGAGAACATCTAAATGGGTATCAATATTTCTCAAAATAGGTATCGATA
*
68874528 CAGTTTGGAAAATCGATACCTTTTTAA-ATTTTTTCTTTTATTCAAAATCCAAACCCGACAATTT
260 CAGTTTGGAAAATCGATACCTTTTTAACATTTTATCTTTTATTCAAAATCCAAA-CC-ACAATTT
* *
68874592 ATCTATACAATTCAAAATTATCTATATTTTTACCCGAAGTATCGATACTCGAGAATTGGTATCGA
323 ATCGATACAATTCAAAATTATCTATATTTTTACCCG-AGTATCGATACTCGAGAATTGGTATCAA
* * * **
68874657 TA-CAACAAAGAGCTATTGTTTCTTGCACAATT-GTTTCAACTCAAAAGTATCAATATGTATGCC
387 TACCAA-AAAGAGCTACTGTTTCCTGCACAATTCATTTCAACTCAAAAGTATCAATACATATGCC
* *
68874720 CTGATTATCAATACCTCTATATAATTCTACAAAAATTCCAGCAAAACATGGCATTCCACATACTC
451 CTGATTATCAATACCTCTATATAATTCTACAAAAATTCAAGCAAAACAGGGCATTCCACATACTC
* * * * *
68874785 AATCACGTAAAACTTCAACATGCATCCATAACTTCAATATTCAATATCAAAATGGCTATATTTGA
516 AATCACATAACACTTCAACATGCATCCATAACTTCAATATTCAACATCAAAATGTCCATATTTGA
* *
68874850 AGTCCATGGCAATACCAAAAATTTCAACCAAGCAAACCAATAAACTAATAACAAC
581 AGTCCATAGCAATATCAAAAATTTCAACCAAGCAAACCAATAAACTAATAACAAC
68874905 ATGTAACACC
Statistics
Matches: 1742, Mismatches: 248, Indels: 108
0.83 0.12 0.05
Matches are distributed among these distances:
693 1 0.00
694 204 0.12
695 92 0.05
696 6 0.00
697 274 0.16
698 9 0.01
700 1 0.00
701 1 0.00
702 1 0.00
703 1 0.00
705 1 0.00
707 1 0.00
709 1 0.00
710 4 0.00
711 279 0.16
712 100 0.06
713 395 0.23
714 300 0.17
715 71 0.04
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (712 bp):
CATTGTCTTATTCCCACAGTTCAAAAATAATAGCAATAATATCACCTACTCAAACACTAAGCCTA
ACTTGGATCACTTCCTTGGAATTCCACACCGCCCACACCGGAAACACTAACTATCTGCAAAGGTT
TAGAAAAGAGTGTGTGAGCTTAAACAAGCTCAGTGAATGATCGAGAAAAAACTACCAATAAACAT
GATATCATACATTAAATGAGAACATCTAAATGGGTATCAATATTTCTCAAAATAGGTATCGATAC
AGTTTGGAAAATCGATACCTTTTTAACATTTTATCTTTTATTCAAAATCCAAACCACAATTTATC
GATACAATTCAAAATTATCTATATTTTTACCCGAGTATCGATACTCGAGAATTGGTATCAATACC
AAAAAGAGCTACTGTTTCCTGCACAATTCATTTCAACTCAAAAGTATCAATACATATGCCCTGAT
TATCAATACCTCTATATAATTCTACAAAAATTCAAGCAAAACAGGGCATTCCACATACTCAATCA
CATAACACTTCAACATGCATCCATAACTTCAATATTCAACATCAAAATGTCCATATTTGAAGTCC
ATAGCAATATCAAAAATTTCAACCAAGCAAACCAATAAACTAATAACAACGTCCACGAACCTAAG
AGTATTAAAATCAAAATAATCATTTAAAACATCAAGATAATAATCAACCAAAAATTCTACCA
Found at i:68875344 original size:26 final size:26
Alignment explanation
Indices: 68875315--68875422 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
68875305 TGGTACAAAC
68875315 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
68875341 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68875367 TGATAGTGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
68875393 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68875419 TGAT
1 TGAT
68875423 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68876625 original size:16 final size:15
Alignment explanation
Indices: 68876599--68876628 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
68876589 ATTAGATTGG
68876599 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
68876614 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
68876629 TCGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:68876933 original size:26 final size:26
Alignment explanation
Indices: 68876867--68876942 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
68876857 AAAAGTAGCT
* * *
68876867 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
68876895 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
*
68876921 AAATTACCATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
68876943 GTTACTTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:68877086 original size:27 final size:27
Alignment explanation
Indices: 68877046--68877132 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
68877036 AGGAAGCGTC
*
68877046 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
68877073 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
68877100 CTAGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
68877127 CTGGTG
1 CTGGTG
68877133 ACTCCGTTAC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
26 8 0.15
27 43 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:68879776 original size:24 final size:24
Alignment explanation
Indices: 68879749--68879797 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
68879739 TTACACTTGA
68879749 ATACTTAAACCCCTGTATCAATAT
1 ATACTTAAACCCCTGTATCAATAT
68879773 ATACTTAAACCCCTGTATCAATAT
1 ATACTTAAACCCCTGTATCAATAT
68879797 A
1 A
68879798 ATTCATCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (24 bp):
ATACTTAAACCCCTGTATCAATAT
Found at i:68880228 original size:56 final size:56
Alignment explanation
Indices: 68880168--68880375 Score: 238
Period size: 56 Copynumber: 3.7 Consensus size: 56
68880158 CAGATAGGTT
* * *
68880168 CTTACTCGTAAACACATATCAAAATCACATATCGATGCCAACGTATGAAACGTGGA
1 CTTACTCGCAAACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGA
* ** * *
68880224 CTTACTCACACGCATATATCAGAATCACATATTGATGCCAACGTATTAAACGTGGA
1 CTTACTCGCAAACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGA
* ** * *
68880280 CTTACTCGCACAA-GTATATCGGAATCACATATTGATGCCAACGTATTAAACGTGGT
1 CTTACTCGCA-AACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGA
* * ***
68880336 CTTACTCGCACACATATATCGATGCCACATATCGATGCCA
1 CTTACTCGCAAACATATATCAAAATCACATATCGATGCCA
68880376 CATATTCTTC
Statistics
Matches: 129, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
55 1 0.01
56 128 0.99
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.26
Consensus pattern (56 bp):
CTTACTCGCAAACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:68880366 original size:15 final size:15
Alignment explanation
Indices: 68880346--68880380 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
68880336 CTTACTCGCA
68880346 CACATATATCGATGC
1 CACATATATCGATGC
68880361 CAC--ATATCGATGC
1 CACATATATCGATGC
68880374 CACATAT
1 CACATAT
68880381 TCTTCCAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
13 13 0.72
15 5 0.28
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (15 bp):
CACATATATCGATGC
Found at i:68880369 original size:13 final size:13
Alignment explanation
Indices: 68880351--68880380 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
68880341 TCGCACACAT
68880351 ATATCGATGCCAC
1 ATATCGATGCCAC
68880364 ATATCGATGCCAC
1 ATATCGATGCCAC
68880377 ATAT
1 ATAT
68880381 TCTTCCAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (13 bp):
ATATCGATGCCAC
Found at i:68884437 original size:26 final size:26
Alignment explanation
Indices: 68884408--68884460 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
68884398 TCAAACATGC
68884408 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
68884434 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
68884460 A
1 A
68884461 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:68885981 original size:26 final size:26
Alignment explanation
Indices: 68885945--68886054 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
68885935 CATGAAATTC
68885945 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
68885971 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
68885997 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
68886023 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
68886049 TTATCA
1 TTATCA
68886055 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:68892766 original size:712 final size:713
Alignment explanation
Indices: 68891611--68893294 Score: 2054
Period size: 712 Copynumber: 2.4 Consensus size: 713
68891601 TCTAATTGGG
* * * *
68891611 TATCGATACCGTTTGGAAAATTGGAACCTTTTTAACATTATCATTTTTTTCAAAATCCAAAACCC
1 TATCGATACCATTTGGAAAA-TGAAACCTTTTTAACATTCTAATTTTTTTC-AAATCCAAAACCC
* *
68891676 A-ACAATTTATCGATACAATTCAAAAATATCTAAATTTTTTACTCTGAGTATTGATACTCGAGAA
64 AGA-AATTTATCGATACAATTCAAAAATATCTAAATTTTTCACTCTGAGTATCGATACTCGAGAA
* * * ** *
68891740 CTAGTATCGATAACACAATGAGCAACTGTTTCTTGCACATTTGTTTCAACTCAGAAGTATCGATA
128 CTAGTATCGATAACAAAATAAGCAACCGTTTCTTGCACATTCATTTCAACTAAGAAGTATCGATA
* *
68891805 CATATGCCCCGATTATCGATACCTCTGTATAATTTTGCAAAAACTCAAACAAAATAGGGCATTCC
193 CATATGCCCCGATTATCGATACCTCTGTATAATTCTGCAAAAACTCAAACAAAACAGGGCATTCC
* * *
68891870 ACTTACTCAATCACAAACCACTTCAACATGCATCCATAAATTCAATATTAAACATCAAATTGTCT
258 ACATACTCAATCACAAACCACTTCAACATGCATCCATAAATTCAATATTAAACATCAAAATGTCC
* * * * *
68891935 ATATTTGGAGTCCATAGCAATAAAAATAATTTCGACCAGGCAAACCAATAAACTAATAGCAACGT
323 ATATTTGCAGTCCATAGAAATAAAAATAATTTCAACCAAGCAAACCAATAAACTAATAACAACGT
* *
68892000 CCACGAACCTAAGAGTATTAAAATCAAAATAATCATTTAAAAAATCATGATAATAATCAACCAAC
388 CCACGAACCTAAAAGTATTAAAATCAAAATAATCATTTAAAAAATCAAGATAATAATCAACCAAC
* * * *
68892065 AATTCTAGCATATTGTCTTATTCCCATAGTTCAAAAATAATAGAAATAATATCACCTACTCAAAC
453 AATTCTACCACATTATCTTATTCCCACAGTTCAAAAATAATAGAAATAATATCACCTACTCAAAC
*
68892130 ACTAAGCCTAACTTGGATTACTTCCTTAGAATTCTG-CACCGCCCACACTGAAAACACTAACTAT
518 ACTAAGCCTAACTTGGATCACTTCCTTAGAATTC-GACACCGCCCACACTGAAAACACTAACTAT
* * * **
68892194 CTGCAAAGGTTCA-AAAAAAGTGTGTGAGCTTAAACAAGTTCAATGAATGGTTGGGAAAAAACTA
582 CTGCAAAGGTTCAGAAAAAAGTGTGTGACCTTAAACAAGCTCAATGAATGATCAGGAAAAAACTA
*
68892258 ACAACAAACATTG-TATCATACATTAAAAGAAAACATCTAAAT-AGGAAACGATATTTCT-ATAA
647 ACAACAAACA-TGATATCATACATCAAAAGAAAACATCTAAATGA-GAAACGATATTTCTCA-AA
*
68892320 ATGGG
709 ATGGA
* * *
68892325 TA-CTGGTTCCATTTGGAAAACTGAAACCTTTTTAACATTCTAATTTTTTTCACAGTCCAAAACC
1 TATC-GATACCATTTGGAAAA-TGAAACCTTTTTAACATTCTAATTTTTTTCA-AATCCAAAACC
* * *
68892389 CAGAAATGTATCGATACAATTTAAAAGA-ATCTATATTTTTCCAC-C-GAGTATCGATACTCGAG
63 CAGAAATTTATCGATACAATTCAAAA-ATATCTAAATTTTT-CACTCTGAGTATCGATACTCGAG
** * * *
68892451 ATTTGGTATCGATACCAAAATAAGCAACCGTTTAC-TGCACATTCATTTCAACTAAGAAGTTTCG
126 AACTAGTATCGATAACAAAATAAGCAACCGTTT-CTTGCACATTCATTTCAACTAAGAAGTATCG
* * * *
68892515 ATACATATG-CCCGATTATCGATACCTCTGTATAATTCTGCAAAAATTCAAGCTAAACAGGGGAC
190 ATACATATGCCCCGATTATCGATACCTCTGTATAATTCTGCAAAAACTCAAACAAAACAGGGCA-
* * * * * *
68892579 TT-CACATACTCAGTCACATACCATTTCAACATGCATCCATAACTTCAATTTTCAACATCAAAAT
254 TTCCACATACTCAATCACAAACCACTTCAACATGCATCCATAAATTCAATATTAAACATCAAAAT
* *
68892643 GTCCCTATTTGCAGTCCATAGAAATATCAAAA-AA-TTCAACCAAGCAAGCCAATAAACTAATAA
319 GTCCATATTTGCAGTCCATAGAAATA--AAAATAATTTCAACCAAGCAAACCAATAAACTAATAA
* *
68892706 CAACGTCCACGAACCTAAAAGTATTAAAATCAAAATAATTATTTAAAACATCAAGATAATAATCA
382 CAACGTCCACGAACCTAAAAGTATTAAAATCAAAATAATCATTTAAAAAATCAAGATAATAATCA
* * * *
68892771 ACTAACAATTCTACCACATTATCTTATTTCTACAGTTCAAAAATAATAGCAATAATATCACCTAC
447 ACCAACAATTCTACCACATTATCTTATTCCCACAGTTCAAAAATAATAGAAATAATATCACCTAC
* * *
68892836 TCAAACACTAAGCCTAACTTGTATCACTTCCTTAGAATTCGACACCGCCCATACTGGAAACACTA
512 TCAAACACTAAGCCTAACTTGGATCACTTCCTTAGAATTCGACACCGCCCACACTGAAAACACTA
* *
68892901 ACTATCTGTAAAGGTTCAGAAAAAAGTGTGTGACCTTAAACAAGCTCAGTGAATGATCAGGAAAA
577 ACTATCTGCAAAGGTTCAGAAAAAAGTGTGTGACCTTAAACAAGCTCAATGAATGATCAGGAAAA
* * * * *
68892966 AACTACCAATAAACATGATATCATACATCAAATGAGAACATCTAAATGAGAATCGATATTTCTCA
642 AACTAACAACAAACATGATATCATACATCAAAAGAAAACATCTAAATGAGAAACGATATTTCTCA
68893031 AAATGGA
707 AAATGGA
* * * * *
68893038 TATCGATACCATTTGGCAAATCAGTACCTTTTTAACATTCTGATTTTCTTCGAAATCCAAAACCC
1 TATCGATACCATTTGGAAAATGA-AACCTTTTTAACATTCTAATTTTTTTC-AAATCCAAAACCC
* * * * * * * ** * *
68893103 GGAAATTTATCAATAGAA-TAAAAAATATGTATA-TTTT-ACCCTGAGTATTTATACTAGGGAAC
64 AGAAATTTATCGATACAATTCAAAAATATCTAAATTTTTCACTCTGAGTATCGATACTCGAGAAC
* * * * ** * * *** *
68893165 TAGTATCAATACCAAAATGAGCTACTATTGCTTGTACATTTGCTTCAACTTAGAAGTATCGATAC
129 TAGTATCGATAACAAAATAAGCAACCGTTTCTTGCACATTCATTTCAACTAAGAAGTATCGATAC
* ** * * * * ** * *
68893230 ATATGTCGTGGTTATCGATAGCTCTGTATAATTTTGCAAAAATTGTAGCAAAACATGGCATTCCA
194 ATATGCCCCGATTATCGATACCTCTGTATAATTCTGCAAAAACTCAAACAAAACAGGGCATTCCA
68893295 ATTAACACCC
Statistics
Matches: 828, Mismatches: 119, Indels: 48
0.83 0.12 0.05
Matches are distributed among these distances:
709 2 0.00
710 2 0.00
711 77 0.09
712 404 0.49
713 244 0.29
714 95 0.11
715 4 0.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (713 bp):
TATCGATACCATTTGGAAAATGAAACCTTTTTAACATTCTAATTTTTTTCAAATCCAAAACCCAG
AAATTTATCGATACAATTCAAAAATATCTAAATTTTTCACTCTGAGTATCGATACTCGAGAACTA
GTATCGATAACAAAATAAGCAACCGTTTCTTGCACATTCATTTCAACTAAGAAGTATCGATACAT
ATGCCCCGATTATCGATACCTCTGTATAATTCTGCAAAAACTCAAACAAAACAGGGCATTCCACA
TACTCAATCACAAACCACTTCAACATGCATCCATAAATTCAATATTAAACATCAAAATGTCCATA
TTTGCAGTCCATAGAAATAAAAATAATTTCAACCAAGCAAACCAATAAACTAATAACAACGTCCA
CGAACCTAAAAGTATTAAAATCAAAATAATCATTTAAAAAATCAAGATAATAATCAACCAACAAT
TCTACCACATTATCTTATTCCCACAGTTCAAAAATAATAGAAATAATATCACCTACTCAAACACT
AAGCCTAACTTGGATCACTTCCTTAGAATTCGACACCGCCCACACTGAAAACACTAACTATCTGC
AAAGGTTCAGAAAAAAGTGTGTGACCTTAAACAAGCTCAATGAATGATCAGGAAAAAACTAACAA
CAAACATGATATCATACATCAAAAGAAAACATCTAAATGAGAAACGATATTTCTCAAAATGGA
Found at i:68897504 original size:29 final size:29
Alignment explanation
Indices: 68897447--68897517 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
68897437 GTAAGCATGA
*
68897447 ATATGAATGTGA-CTGGGCCTAACGAGCC
1 ATATGAATGTGATTTGGGCCTAACGAGCC
* * *
68897475 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAACGAGCC
*
68897504 ATATGAATATGATT
1 ATATGAATGTGATT
68897518 GGGTTTAAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 11 0.31
29 25 0.69
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAACGAGCC
Found at i:68899457 original size:24 final size:25
Alignment explanation
Indices: 68899425--68899494 Score: 81
Period size: 24 Copynumber: 2.8 Consensus size: 25
68899415 AGTTGAAATT
68899425 GTAAGCTCTGACGAGCTGAGA-ACA-
1 GTAAGCTCT-ACGAGCTGAGATACAG
* *
68899449 GTAAGCTCTTACGAGCTGATATATAG
1 GTAAGCTC-TACGAGCTGAGATACAG
68899475 GTAAGCTCATACGAGCTGAG
1 GTAAGCTC-TACGAGCTGAG
68899495 GTGAGTCCGC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.46
25 3 0.08
26 18 0.46
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (25 bp):
GTAAGCTCTACGAGCTGAGATACAG
Found at i:68901320 original size:40 final size:40
Alignment explanation
Indices: 68901243--68901460 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
68901233 AAACCAAGTA
* * * *
68901243 CCTTCGGGATTTAG-CCGGACATAGCT-ACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
68901282 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68901322 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
68901362 CCTTCGGGACTTAGATCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
68901402 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
68901442 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68901461 TTATCATCCG
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.92
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:68905955 original size:20 final size:20
Alignment explanation
Indices: 68905930--68905970 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
68905920 CATGCTCGTA
68905930 TGGCATGGGACACACCCGTG
1 TGGCATGGGACACACCCGTG
*
68905950 TGGCATGGGACACGCCCGTG
1 TGGCATGGGACACACCCGTG
68905970 T
1 T
68905971 CCTCAGCCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (20 bp):
TGGCATGGGACACACCCGTG
Found at i:68918648 original size:14 final size:14
Alignment explanation
Indices: 68918629--68918656 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68918619 TAATGTATAA
68918629 TATTTATAATCTTT
1 TATTTATAATCTTT
68918643 TATTTATAATCTTT
1 TATTTATAATCTTT
68918657 GCCTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (14 bp):
TATTTATAATCTTT
Found at i:68922256 original size:3 final size:3
Alignment explanation
Indices: 68922248--68922304 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
68922238 TTAATTAATT
* * * *
68922248 TTA TTA TTA TTA TTAA TTA TTA TTA TTA TTA TTG TTA CTA CTA CTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
68922294 TTA TTA TTA TT
1 TTA TTA TTA TT
68922305 GTATCATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:68922265 original size:22 final size:21
Alignment explanation
Indices: 68922223--68922280 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
68922213 CTATTTTAGC
* *
68922223 TATTTTATCATTA-AATTAAT
1 TATTTTATTATTATTATTAAT
68922243 TAATTTTATTATTATTATTAAT
1 T-ATTTTATTATTATTATTAAT
68922265 TATTATTATTATTATT
1 TATT-TTATTATTATT
68922281 GTTACTACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 14 0.42
22 18 0.55
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTATTATTATTATTAAT
Found at i:68927153 original size:8 final size:8
Alignment explanation
Indices: 68927142--68927179 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
68927132 GCCAAAAAAG
68927142 AAAAAATA
1 AAAAAATA
68927150 AAAAAATA
1 AAAAAATA
*
68927158 TAAAAATA
1 AAAAAATA
68927166 AAAAAATA
1 AAAAAATA
68927174 AAAAAA
1 AAAAAA
68927180 AAACACAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAATA
Found at i:68927162 original size:16 final size:15
Alignment explanation
Indices: 68927135--68927182 Score: 71
Period size: 16 Copynumber: 3.2 Consensus size: 15
68927125 AGAGGCAGCC
*
68927135 AAAAAAGAAAAAATA
1 AAAAAATAAAAAATA
68927150 AAAAAATATAAAAATA
1 AAAAAATA-AAAAATA
68927166 AAAAAATAAAAAA-A
1 AAAAAATAAAAAATA
68927180 AAA
1 AAA
68927183 CACAAAAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
14 4 0.13
15 12 0.39
16 15 0.48
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.10
Consensus pattern (15 bp):
AAAAAATAAAAAATA
Found at i:68927750 original size:17 final size:18
Alignment explanation
Indices: 68927719--68927752 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68927709 CCCCCCCCAA
*
68927719 AAAAAAGGAAGAGAAAAG
1 AAAAAAGGAAAAGAAAAG
68927737 AAAAAA-GAAAAGAAAA
1 AAAAAAGGAAAAGAAAA
68927753 AGGAGAGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (18 bp):
AAAAAAGGAAAAGAAAAG
Found at i:68928157 original size:65 final size:65
Alignment explanation
Indices: 68928032--68928159 Score: 168
Period size: 65 Copynumber: 2.0 Consensus size: 65
68928022 TCTTACCCAA
*
68928032 ATTGAATTTGCTATCTTTGATTACTTTATTTGTTTCAAAATATGCTCTCAATAAATTTCCTTCTT
1 ATTGAATTTGCTATCTTTGATTACTTTATTTGTTTCAAAATATGCTCTCAATAAACTTCCTTCTT
* ** ** **
68928097 ATTGCATTTGCTATCTTTGATTAAC-TTATTTGTTTTGAGCTATGCTCTCAATTGACTTCCTTC
1 ATTGAATTTGCTATCTTTGATT-ACTTTATTTGTTTCAAAATATGCTCTCAATAAACTTCCTTC
68928160 CTGTCCATTG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
65 52 0.96
66 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (65 bp):
ATTGAATTTGCTATCTTTGATTACTTTATTTGTTTCAAAATATGCTCTCAATAAACTTCCTTCTT
Found at i:68928697 original size:81 final size:81
Alignment explanation
Indices: 68928573--68928741 Score: 212
Period size: 81 Copynumber: 2.1 Consensus size: 81
68928563 ATTGATTGAA
* * * ** *
68928573 GAAGCTACAAACCCTATACCCCTGAGTTACAGTGGGATGGATTGAAGAAGATACGGATTCTATAC
1 GAAGATACAAACCCTATACCCCTGAGCTACAATGGGATGGATTGAAGAAGATACAAATCCTATAC
68928638 CCCTGAATTGCAGTGG
66 CCCTGAATTGCAGTGG
* * * * * *
68928654 GAAGATACAAATCTTATACCCCTGAGCTGCAATGGGATTGATTGAAGATGGTACAAATCCTATAC
1 GAAGATACAAACCCTATACCCCTGAGCTACAATGGGATGGATTGAAGAAGATACAAATCCTATAC
*
68928719 CCCTGAGTTGCAGTGG
66 CCCTGAATTGCAGTGG
68928735 GATAGAT
1 GA-AGAT
68928742 GGAAGAAACC
Statistics
Matches: 74, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 70 0.95
82 4 0.05
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (81 bp):
GAAGATACAAACCCTATACCCCTGAGCTACAATGGGATGGATTGAAGAAGATACAAATCCTATAC
CCCTGAATTGCAGTGG
Found at i:68928718 original size:46 final size:46
Alignment explanation
Indices: 68928659--68928747 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
68928649 AGTGGGAAGA
* * *
68928659 TACAAATCTTATACCCCTGAGCTGCAATGGGATTGATTGAAGATGG
1 TACAAATCCTATACCCCTGAGCTGCAATGGGATAGATGGAAGATGG
* *
68928705 TACAAATCCTATACCCCTGAGTTGCAGTGGGATAGATGGAAGA
1 TACAAATCCTATACCCCTGAGCTGCAATGGGATAGATGGAAGA
68928748 AACCACAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (46 bp):
TACAAATCCTATACCCCTGAGCTGCAATGGGATAGATGGAAGATGG
Found at i:68930186 original size:46 final size:46
Alignment explanation
Indices: 68930133--68930305 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
68930123 TTGGGCATCC
68930133 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * * *
68930179 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * *
68930226 GAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
68930272 GAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68930306 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 28 0.28
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:68930285 original size:93 final size:93
Alignment explanation
Indices: 68930126--68930298 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
68930116 GGGATATTTG
* * *
68930126 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAACTCGTTGAG
68930191 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
68930219 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAGCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAACTCGTTGAG
68930284 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
68930299 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCTGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:68931924 original size:44 final size:44
Alignment explanation
Indices: 68931875--68932002 Score: 168
Period size: 44 Copynumber: 2.9 Consensus size: 44
68931865 GTGAATCCAC
*
68931875 AAATCTCATCTCTCTGAAGTAGCAGTGGAGCAGATTGAAGTCAT
1 AAATCTCATCTCTCTGAAGTAGTAGTGGAGCAGATTGAAGTCAT
* * *
68931919 AAATCTCATCTCCCTGAAGTAGTAGTGGAGCATATTGAAGTTAT
1 AAATCTCATCTCTCTGAAGTAGTAGTGGAGCAGATTGAAGTCAT
* * * *
68931963 AGATCTTATCTCAT-TGAAGTTGTAGTGGAGCAGATCGAAG
1 AAATCTCATCTC-TCTGAAGTAGTAGTGGAGCAGATTGAAG
68932003 AAAGTGAATC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
44 73 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (44 bp):
AAATCTCATCTCTCTGAAGTAGTAGTGGAGCAGATTGAAGTCAT
Found at i:68932132 original size:44 final size:44
Alignment explanation
Indices: 68932064--68932533 Score: 207
Period size: 44 Copynumber: 10.4 Consensus size: 44
68932054 ATTATGGCGG
* *
68932064 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
* * * *
68932108 ACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGACAGCGA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCA-CCA
* * ** * * * *
68932153 ATCTTA-CTTCCTTGACGTTGTAGTGGAACATATTAAAGCTATAAACTATGGCGA
1 ATCTTATC-TCCCTGAAGTTACAGTGGAGCAGATTGAAGC------C-A---CCA
* * *
68932207 ATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
** * * * * * * **
68932251 GCCTTATCTCCTTGAAGTT-CTAGCGAAGTAGATCGAAGCTAAAA
1 ATCTTATCTCCCTGAAGTTAC-AGTGGAGCAGATTGAAGCCACCA
* * * * * *
68932295 ATC-TATTATCCCTAAAATTACATTGGGGCGGATTGAAGCCACCA
1 ATCTTA-TCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
* * ** * **
68932339 ATCTTATCTCCTTGAAGTTCCAGTGGAGCAGATCAAAGCTATAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
* * * * * *
68932383 ATCTCT-TCTCCCTAAAATTACATTGGAGCGGATTAAATCCACCA
1 ATCT-TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
* * * * * * *
68932427 ACCTTATCTCCTTGAAGTTCCA-TCGGAGTAGATCGAAGCTACAA
1 ATCTTATCTCCCTGAAGTTACAGT-GGAGCAGATTGAAGCCACCA
* * * *
68932471 ATCTCT-TCTCCCTAAAATTACATTGGAGTAGATTGAAGCCA-CA
1 ATCT-TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
*
68932514 ATCCTTATCTCTCTGAAGTT
1 AT-CTTATCTCCCTGAAGTT
68932534 GCAATATAGC
Statistics
Matches: 305, Mismatches: 98, Indels: 46
0.68 0.22 0.10
Matches are distributed among these distances:
43 9 0.03
44 223 0.73
45 35 0.11
47 1 0.00
48 1 0.00
51 1 0.00
52 1 0.00
54 33 0.11
55 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCA
Found at i:68932192 original size:143 final size:143
Alignment explanation
Indices: 68931967--68932269 Score: 430
Period size: 143 Copynumber: 2.1 Consensus size: 143
68931957 AGTTATAGAT
* ** * *
68931967 CTTATCTCATTGAAGTTGTAGTGGAGCAGATCGAAGAAAGTGAATCTTATTTCCTTGGAGTTGCA
1 CTTATCTCCTTGAAGTTACAGTGGAGCAGATCGAAGAAAGCGAATCTTACTTCCTTGGAGTTGCA
* * * *
68932032 GTGGAACAGATTGAAGCTACGAATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAACTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
68932097 TGAAGCCACCAAC
131 TGAAGCCACCAAC
* *
68932110 CTTATCTCCCTGAAGTTACAGTGGAGCAGA-CTGAAGACAGCGAATCTTACTTCCTT-GACGTTG
1 CTTATCTCCTTGAAGTTACAGTGGAGCAGATC-GAAGAAAGCGAATCTTACTTCCTTGGA-GTTG
* * * *
68932173 TAGTGGAACATATTAAAGCTATAAACTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGTAG
64 CAGTGGAACAGATTAAAGCTACAAACTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
*
68932238 ATTGAAGCCACCAGC
129 ATTGAAGCCACCAAC
68932253 CTTATCTCCTTGAAGTT
1 CTTATCTCCTTGAAGTT
68932270 CTAGCGAAGT
Statistics
Matches: 141, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
142 3 0.02
143 138 0.98
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (143 bp):
CTTATCTCCTTGAAGTTACAGTGGAGCAGATCGAAGAAAGCGAATCTTACTTCCTTGGAGTTGCA
GTGGAACAGATTAAAGCTACAAACTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
TGAAGCCACCAAC
Found at i:68932355 original size:88 final size:88
Alignment explanation
Indices: 68932237--68932533 Score: 409
Period size: 88 Copynumber: 3.4 Consensus size: 88
68932227 CAGTGGAGTA
* * * *
68932237 GATTGAAGCCACCAGCCTTATCTCCTTGAAGTTCTAGCGAAGTAGATCGAAGCTAAAAATCTATT
1 GATTGAAGCCACCAACCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTAAAAATCTCTT
* *
68932302 ATCCCTAAAATTACATTGGGGCG
66 CTCCCTAAAATTACATTGGAGCG
* * * * *
68932325 GATTGAAGCCACCAATCTTATCTCCTTGAAGTTCCAGTGGAGCAGATCAAAGCTATAAATCTCTT
1 GATTGAAGCCACCAACCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTAAAAATCTCTT
68932390 CTCCCTAAAATTACATTGGAGCG
66 CTCCCTAAAATTACATTGGAGCG
* * * *
68932413 GATTAAATCCACCAACCTTATCTCCTTGAAGTTCCATCGGAGTAGATCGAAGCTACAAATCTCTT
1 GATTGAAGCCACCAACCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTAAAAATCTCTT
**
68932478 CTCCCTAAAATTACATTGGAGTA
66 CTCCCTAAAATTACATTGGAGCG
68932501 GATTGAAGCCA-CAATCCTTATCT-CTCTGAAGTT
1 GATTGAAGCCACCAA-CCTTATCTCCT-TGAAGTT
68932534 GCAATATAGC
Statistics
Matches: 184, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
87 5 0.03
88 179 0.97
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (88 bp):
GATTGAAGCCACCAACCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTAAAAATCTCTT
CTCCCTAAAATTACATTGGAGCG
Found at i:68934876 original size:7 final size:7
Alignment explanation
Indices: 68934864--68934890 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
68934854 TCTTCCATCC
68934864 TTTTATA
1 TTTTATA
68934871 TTTTATA
1 TTTTATA
68934878 TTTTATA
1 TTTTATA
68934885 TTTTAT
1 TTTTAT
68934891 TTTAACTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTATA
Found at i:68935678 original size:3 final size:3
Alignment explanation
Indices: 68935670--68935751 Score: 69
Period size: 3 Copynumber: 27.3 Consensus size: 3
68935660 TTAATTTTAA
* * * *
68935670 TAT TAT TAT TAAT TAAT T-C TAT TAT TGT TAT TAT TAT TGT TAC TAT
1 TAT TAT TAT T-AT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
68935716 TAT TAT TAT TAT TAT TAT GAT TAA T-T TAG TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
68935752 TTTGTGTGTG
Statistics
Matches: 62, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
2 2 0.03
3 53 0.85
4 7 0.11
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:68940315 original size:40 final size:39
Alignment explanation
Indices: 68940271--68940375 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
68940261 AGTGACCATA
*
68940271 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
68940311 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
68940349 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
68940376 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:68940332 original size:39 final size:40
Alignment explanation
Indices: 68940234--68940375 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
68940224 AATGATGTCT
* * *
68940234 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
68940274 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
68940314 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
68940353 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
68940376 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:68940394 original size:79 final size:80
Alignment explanation
Indices: 68940234--68940381 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
68940224 AATGATGTCT
* **
68940234 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
68940299 CGAGATACTAATTCC
66 CGAGATACTAATTCC
* * * * *
68940314 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
68940376 AACGAG
64 AACGAG
68940382 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAATTCC
Done.