Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 213 of 290
Found at i:68940668 original size:47 final size:47
Alignment explanation
Indices: 68940599--68940813 Score: 349
Period size: 47 Copynumber: 4.6 Consensus size: 47
68940589 AAGGGTTGGT
68940599 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68940646 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68940693 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
68940740 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68940787 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
68940814 TCCCGAAGGG
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 156 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:68942912 original size:14 final size:14
Alignment explanation
Indices: 68942883--68942923 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
68942873 GTCCATGCAT
*
68942883 ATATCACAGATCATA
1 ATATCACA-ATTATA
68942898 ATATCACAATTATA
1 ATATCACAATTATA
*
68942912 AAATCACAATTA
1 ATATCACAATTA
68942924 AATGATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (14 bp):
ATATCACAATTATA
Found at i:68945894 original size:27 final size:26
Alignment explanation
Indices: 68945836--68945949 Score: 147
Period size: 27 Copynumber: 4.3 Consensus size: 26
68945826 ATCCCATAAT
* * *
68945836 GTAAAATGATCGAAATACCTCATAGG
1 GTAAAATGACCAAAATACCCCATAGG
* *
68945862 GTAAAATGAGCGAAATACCGCCATAGG
1 GTAAAATGACCAAAATACC-CCATAGG
68945889 GTAAAATGACCAAAATACCCCCATAGG
1 GTAAAATGACCAAAATA-CCCCATAGG
*
68945916 GTAAAATGACCAAAATACCCCTGTAGG
1 GTAAAATGACCAAAATACCCC-ATAGG
68945943 GTAAAAT
1 GTAAAAT
68945950 AACTGTAATA
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 22 0.28
27 56 0.70
28 2 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.18
Consensus pattern (26 bp):
GTAAAATGACCAAAATACCCCATAGG
Found at i:68945933 original size:54 final size:53
Alignment explanation
Indices: 68945836--68946005 Score: 153
Period size: 54 Copynumber: 3.2 Consensus size: 53
68945826 ATCCCATAAT
* * * * *
68945836 GTAAAATGATCGAAATACCTCATAGGGTAAAATGAGCGAAATACCGCC-ATAGG
1 GTAAAATGACCAAAATACCCCATAGGGTAAAATGACCAAAATACC-CCTATAGG
*
68945889 GTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCTGTAGG
1 GTAAAATGACCAAAATA-CCCCATAGGGTAAAATGACCAAAATACCCCTATAGG
* *** ** *** * *
68945943 GTAAAATAACTGTAATACCCTTGTAGGGTAAAATGACTGTAATACCCCTGTAAG
1 GTAAAATGACCAAAATACCC-CATAGGGTAAAATGACCAAAATACCCCTATAGG
68945997 GTAAAATGA
1 GTAAAATGA
68946006 TTGATTTGCC
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
53 20 0.21
54 77 0.79
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.21
Consensus pattern (53 bp):
GTAAAATGACCAAAATACCCCATAGGGTAAAATGACCAAAATACCCCTATAGG
Found at i:68945959 original size:27 final size:27
Alignment explanation
Indices: 68945858--68946005 Score: 147
Period size: 27 Copynumber: 5.5 Consensus size: 27
68945848 AAATACCTCA
* *
68945858 TAGGGTAAAATGAGC-GAAATACCGCC-A
1 TAGGGTAAAATGA-CTGTAATACC-CCTG
*** **
68945885 TAGGGTAAAATGACCAAAATACCCCCA
1 TAGGGTAAAATGACTGTAATACCCCTG
***
68945912 TAGGGTAAAATGACCAAAATACCCCTG
1 TAGGGTAAAATGACTGTAATACCCCTG
* *
68945939 TAGGGTAAAATAACTGTAATACCCTTG
1 TAGGGTAAAATGACTGTAATACCCCTG
68945966 TAGGGTAAAATGACTGTAATACCCCTG
1 TAGGGTAAAATGACTGTAATACCCCTG
*
68945993 TAAGGTAAAATGA
1 TAGGGTAAAATGA
68946006 TTGATTTGCC
Statistics
Matches: 108, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.03
27 105 0.97
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (27 bp):
TAGGGTAAAATGACTGTAATACCCCTG
Found at i:68947468 original size:40 final size:40
Alignment explanation
Indices: 68947354--68947478 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 40
68947344 AGTGCCTTTC
* * *
68947354 ATAGCCAAAGCTATCTCAACCTCGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATCTCAA-ATCGCACACTAAGTGCCAAAT
* *
68947395 ATAGCCGAAGCTAT-TCCAAGTCGCACACTAAGTGTCAAAT
1 ATAGCCGAAGCTATCT-CAAATCGCACACTAAGTGCCAAAT
* * * * * *
68947435 ATTGCCGAAGCTATCTCAAAACGTACACAAAGTGCGAAAC
1 ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCAAAT
68947475 ATAG
1 ATAG
68947479 TCAATTTGTC
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
40 52 0.75
41 17 0.25
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (40 bp):
ATAGCCGAAGCTATCTCAAATCGCACACTAAGTGCCAAAT
Found at i:68948834 original size:48 final size:48
Alignment explanation
Indices: 68948778--68948874 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
68948768 CTCATGAGCT
*
68948778 AAAATCTATATCGGTTCTTCATCATAAGACATATCAGGCTGAATTTCA
1 AAAATCTATATCAGTTCTTCATCATAAGACATATCAGGCTGAATTTCA
*
68948826 AAAATCTATATCAGTTCTTCATCATAAGCCATATCAGGCTGAATTTCA
1 AAAATCTATATCAGTTCTTCATCATAAGACATATCAGGCTGAATTTCA
68948874 A
1 A
68948875 CCTCAGTCGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (48 bp):
AAAATCTATATCAGTTCTTCATCATAAGACATATCAGGCTGAATTTCA
Found at i:68950422 original size:27 final size:27
Alignment explanation
Indices: 68950392--68950522 Score: 181
Period size: 27 Copynumber: 4.9 Consensus size: 27
68950382 TTACCCTATA
*
68950392 GGGGTATTTCGATAATTTTACAAACCG
1 GGGGTATTTCGATAATTTTACAAACTG
* *
68950419 GGGGTATTTCAATAATTTTACAAACTA
1 GGGGTATTTCGATAATTTTACAAACTG
*
68950446 GAGGTATTTCGATAATTTTACAAACTG
1 GGGGTATTTCGATAATTTTACAAACTG
* * * *
68950473 AGGGTATTTTGATAATTTTATAAATTG
1 GGGGTATTTCGATAATTTTACAAACTG
*
68950500 GGGGTATTTCAATAATTTTACAA
1 GGGGTATTTCGATAATTTTACAA
68950523 TTGCACACTC
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGGTATTTCGATAATTTTACAAACTG
Found at i:68956903 original size:41 final size:41
Alignment explanation
Indices: 68956853--68956931 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 41
68956843 ATTATAATCT
* *
68956853 CGCATACTAAGTGCC-TTTCATAGCCGAAGCTATCTCAACCC
1 CGCACACTAAGTGCCATAT-ATAGCCGAAGCTATCTCAACCC
68956894 CGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAA
1 CGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAA
68956932 AATGCACACA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 33 0.94
42 2 0.06
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (41 bp):
CGCACACTAAGTGCCATATATAGCCGAAGCTATCTCAACCC
Found at i:68960865 original size:40 final size:40
Alignment explanation
Indices: 68960793--68961002 Score: 262
Period size: 40 Copynumber: 5.3 Consensus size: 40
68960783 TCTTCGGAAT
* ** *
68960793 TTAG-CCGGATATAACAACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
* * * * *
68960832 TTAACCCGGGTATAGCAACTCGCACGAATGCCTTCAGGTC
1 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
*
68960872 TTAGCCCGGATATATCATCTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
*
68960912 TTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
* * * *
68960952 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
68960992 TTAGCCCGGAT
1 TTAGCCCGGAT
68961003 GTATTCAAAT
Statistics
Matches: 149, Mismatches: 20, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 3 0.02
40 142 0.95
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
Found at i:68961888 original size:21 final size:21
Alignment explanation
Indices: 68961862--68961904 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
68961852 CAGGACAGGA
68961862 ATCTAGTAGTCATTTTGACTC
1 ATCTAGTAGTCATTTTGACTC
68961883 ATCTAGTAGTCATTTTGACTC
1 ATCTAGTAGTCATTTTGACTC
68961904 A
1 A
68961905 GCCCCACAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (21 bp):
ATCTAGTAGTCATTTTGACTC
Found at i:68966943 original size:40 final size:40
Alignment explanation
Indices: 68966869--68967090 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
68966859 AACCCAAGTA
* * *
68966869 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
68966908 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
68966948 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
68966988 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
68967028 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
68967068 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68967091 CATTCGAATA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 152 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:68971023 original size:140 final size:137
Alignment explanation
Indices: 68970773--68971051 Score: 490
Period size: 140 Copynumber: 2.0 Consensus size: 137
68970763 CAAATCTCTT
68970773 TGAGTCATCAAATATTTGAGACTTTGTGATCGAAAATACATGCACTTCTCACCAAATAAATAATG
1 TGAGTCATCAAATATTTGAGACTTTGTGATCGAAAATACATGCACTTCTCACCAAATAAATAA-G
68970838 TGTCTCCATATTTCAAAGCGAAACGATGGCAACTAATTCGAGATCATGGGTTGGATAATTTTTCT
65 TGTCTCCATATTTCAAAGCGAAACGATGGCAACTAATTCGAGATCATGGGTTGGATAATTTTTCT
68970903 CATGTGGC
130 CATGTGGC
68970911 TGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACTTCTCACCAAAT-AATA
1 TGAGTCATCAAATATTTGAGAC-TTTGTGAT-CGAAAATACAT-GCACTTCTCACCAAATAAATA
68970975 A-TGTCTCCATATTTTCAAAGCGAAAACGATGGCAACTAATTCGAGATCATGGGTTGGATAATTT
63 AGTGTCTCCATA-TTTCAAAGCG-AAACGATGGCAACTAATTCGAGATCATGGGTTGGATAATTT
68971039 TTCTCATGTGGC
126 TTCTCATGTGGC
68971051 T
1 T
68971052 TCAATTGCCT
Statistics
Matches: 136, Mismatches: 0, Indels: 8
0.94 0.00 0.06
Matches are distributed among these distances:
138 32 0.24
139 18 0.13
140 70 0.51
141 16 0.12
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (137 bp):
TGAGTCATCAAATATTTGAGACTTTGTGATCGAAAATACATGCACTTCTCACCAAATAAATAAGT
GTCTCCATATTTCAAAGCGAAACGATGGCAACTAATTCGAGATCATGGGTTGGATAATTTTTCTC
ATGTGGC
Found at i:68978786 original size:39 final size:39
Alignment explanation
Indices: 68978732--68978950 Score: 298
Period size: 39 Copynumber: 5.6 Consensus size: 39
68978722 AAACCAAGTA
* *
68978732 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAA-TAGCACAAATG
* *
68978771 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAG-CAATAGCACAAATG
* *
68978811 CCTTCGGGACTTAGCCCGGATATATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAATAGCACAAATG
*
68978850 CCTTCGGGACTTAGCCCGGATATATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAATAGCACAAATG
* * *
68978889 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGCAATAGCACAAATG
*
68978929 CC-TCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68978951 CATTCGAATA
Statistics
Matches: 165, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 104 0.63
40 58 0.35
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCAATAGCACAAATG
Found at i:68978906 original size:78 final size:79
Alignment explanation
Indices: 68978732--68978950 Score: 336
Period size: 79 Copynumber: 2.8 Consensus size: 79
68978722 AAACCAAGTA
* * * *
68978732 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
68978796 TCAATAGCACAAAAG
65 TCAATAGCACAAAAG
68978811 CCTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA-T
1 CCTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
68978875 CAATAGCACAAATG
66 CAATAGCACAAAAG
* *
68978889 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGCC-TCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
68978951 CATTCGAATA
Statistics
Matches: 131, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
78 56 0.43
79 65 0.50
80 10 0.08
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAAAG
Found at i:68987231 original size:40 final size:40
Alignment explanation
Indices: 68987157--68987378 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
68987147 AACCCAAGTA
* * *
68987157 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * * *
68987196 CCTTCGGGTCTTAGCCCAGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
68987236 CCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
68987276 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
68987316 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
68987356 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68987379 CATTCGAATA
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 12 0.07
40 150 0.91
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:68990151 original size:55 final size:55
Alignment explanation
Indices: 68990061--68990173 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 55
68990051 CCCGTGTTAA
* * * *
68990061 TTTAACAGGTTTGACCATGGTTCTTCCACATGGGCGTGTCGAACGCTTGTGCTGT
1 TTTAACAGGTTTCACCAAGGTTCTTCCACACGGGCGTGTCGAACGCCTGTGCTGT
* * *
68990116 TTTAACAGG-TTCACCCAAGGTTCTTCCAGACGGGCGTGTCGCACGCCTGTGTTGT
1 TTTAACAGGTTTCA-CCAAGGTTCTTCCACACGGGCGTGTCGAACGCCTGTGCTGT
68990171 TTT
1 TTT
68990174 GGCAAGCTCG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 3 0.06
55 47 0.94
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.34
Consensus pattern (55 bp):
TTTAACAGGTTTCACCAAGGTTCTTCCACACGGGCGTGTCGAACGCCTGTGCTGT
Found at i:68994628 original size:18 final size:18
Alignment explanation
Indices: 68994605--68994640 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
68994595 TTAGGGTACG
68994605 AACTAGCTAATACTTGAA
1 AACTAGCTAATACTTGAA
68994623 AACTAGCTAATACTTGAA
1 AACTAGCTAATACTTGAA
68994641 GCAACGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (18 bp):
AACTAGCTAATACTTGAA
Found at i:69000641 original size:40 final size:40
Alignment explanation
Indices: 69000519--69000704 Score: 203
Period size: 41 Copynumber: 4.6 Consensus size: 40
69000509 CGAGCTTGGG
*
69000519 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAAT
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAGT
* *
69000560 TACGAAAGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAGT
* *
69000601 TTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAGT
* * * * *** * *
69000641 TCCAAAGGGCCTTCGAGCCAGTGGCCTAATCCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAA-CCGAACTTAGT
*
69000682 CTCGAAGGGC-TTTGAGCCAGTGT
1 TTCGAAGGGCTTTTGAGCCAGTGT
69000705 TAAGAATCGT
Statistics
Matches: 123, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
40 49 0.40
41 74 0.60
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAGT
Found at i:69000687 original size:81 final size:78
Alignment explanation
Indices: 69000505--69000704 Score: 233
Period size: 81 Copynumber: 2.5 Consensus size: 78
69000495 TCGGGGTGTA
*
69000505 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTACGAAAGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAATTACCAAAGGC
* *
69000570 TTTTGAGCCAGTGCT
64 CTTCGAGCCAGTGCT
* * * * *
69000585 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTT-CCAAAGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACCAAA-G
69000649 GCCTTCGAGCCAGTGGCCT
62 GCCTTCGAGCCAGT-G-CT
69000668 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGT
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTGT
69000705 TAAGAATCGT
Statistics
Matches: 103, Mismatches: 11, Indels: 12
0.82 0.09 0.10
Matches are distributed among these distances:
80 22 0.21
81 44 0.43
82 32 0.31
83 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (78 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACCAAAGGCCT
TCGAGCCAGTGCT
Found at i:69000725 original size:81 final size:76
Alignment explanation
Indices: 69000505--69000730 Score: 213
Period size: 81 Copynumber: 2.8 Consensus size: 76
69000495 TCGGGGTGTA
* *
69000505 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTACGAAA-GG
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATT-CCAAAGGG
* *
69000569 CTTTTGAGCCAGTGCT
61 CCTTCGAGCCAGTGCT
* * *
69000585 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCAAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGG-CTTA-TTCCAAAGGG
69000650 CCTTCGAGCCAGTGGCCT
61 CCTTCGAGCCAGT-G-CT
* *
69000668 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGTTAAGAATCGTGCTTGATTCCAAAGGG
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATTCCAAAGGG
69000731 TGGTTGTGCC
Statistics
Matches: 122, Mismatches: 13, Indels: 21
0.78 0.08 0.13
Matches are distributed among these distances:
80 22 0.18
81 61 0.50
82 34 0.28
83 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (76 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGGCTTATTCCAAAGGGCCTTC
GAGCCAGTGCT
Found at i:69002630 original size:30 final size:31
Alignment explanation
Indices: 69002554--69002636 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
69002544 TCAGTCTCGA
*
69002554 CATAT-ACTGGGCCGAAGCCTTTTCATCAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
69002584 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
69002615 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
69002637 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:69002876 original size:24 final size:25
Alignment explanation
Indices: 69002849--69002900 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
69002839 GCCTAGCCTC
69002849 TTTTAAT-AACAGGGGCAAAGCCCT
1 TTTTAATGAACAGGGGCAAAGCCCT
* *
69002873 TTTTGATGAACTGGGGCAAAGCCCT
1 TTTTAATGAACAGGGGCAAAGCCCT
69002898 TTT
1 TTT
69002901 CGGTAAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
TTTTAATGAACAGGGGCAAAGCCCT
Found at i:69002892 original size:25 final size:25
Alignment explanation
Indices: 69002860--69002925 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
69002850 TTTAATAACA
* *
69002860 GGGGCAAAGCCCTTTTTGATGAACT
1 GGGGCAAAGCCCTTTTCGATAAACT
*
69002885 GGGGCAAAGCCCTTTTCGGTAAACT
1 GGGGCAAAGCCCTTTTCGATAAACT
*
69002910 GGGGCATAGCCCTTTT
1 GGGGCAAAGCCCTTTT
69002926 AGTAATTCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (25 bp):
GGGGCAAAGCCCTTTTCGATAAACT
Found at i:69003158 original size:27 final size:27
Alignment explanation
Indices: 69003128--69003299 Score: 161
Period size: 27 Copynumber: 6.4 Consensus size: 27
69003118 GGGGCAAAAT
* *
69003128 GGTAATTTTACCCAACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
69003155 GGTAATTCTT-CCCTACAGGGGTATTTC
1 GGTAATT-TTACCCTACAAGGGTATTTC
*
69003182 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** ** *
69003209 TATAATCCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** * *
69003236 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** *
69003263 GGT-ATTTTA-CAAATCAAGGGTATTTT
1 GGTAATTTTACCCTA-CAAGGGTATTTC
69003289 GGTAATTTTAC
1 GGTAATTTTAC
69003300 AAACCAGGGG
Statistics
Matches: 120, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
25 2 0.02
26 20 0.17
27 96 0.80
28 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:69003385 original size:81 final size:80
Alignment explanation
Indices: 69003252--69003403 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 80
69003242 TCTACCCTAC
*
69003252 AGGGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTA
1 AGGGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
69003317 GTAATTTTACAAACT
66 GTAATTTTACAAACT
* *** * **
69003332 AGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGGTATTTCGGT-ATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT
69003397 AGTAATT
65 AGTAATT
69003404 CTGTAAATCG
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 13 0.21
81 50 0.79
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTCGGTATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
GTAATTTTACAAACT
Found at i:69003417 original size:27 final size:27
Alignment explanation
Indices: 69003254--69003582 Score: 182
Period size: 27 Copynumber: 12.3 Consensus size: 27
69003244 TACCCTACAG
* * * *
69003254 GGGTATTTCGGT-ATTTTACAAATCAA
1 GGGTATTTTGGTAATTCTATAAATCGA
* * *
69003280 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTTGGTAATTCTATAAATCGA
* * * *
69003306 GGGGTATTTTAGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTCTATAAATCGA
* **
69003333 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTTGGTAATTCTATAAATCGA
* * * *
69003361 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTCTATAAATCGA
* *
69003388 GGGTATTTTAGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
* *** *
69003415 GGGCA-AACGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
***
69003441 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
*** * *
69003468 GGGTAAAATGATAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
*** *
69003495 GGGTAAAATGGTAACTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGA
* * * * * *
69003522 GGATATTTGGGTAGTTTTATAAACCGG
1 GGGTATTTTGGTAATTCTATAAATCGA
* * * *
69003549 GGGTACTTTGGTAATTTTACAACT-GA
1 GGGTATTTTGGTAATTCTATAAATCGA
69003575 GGGTATTT
1 GGGTATTT
69003583 CAGTAATTTG
Statistics
Matches: 247, Mismatches: 52, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
26 40 0.16
27 205 0.83
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (27 bp):
GGGTATTTTGGTAATTCTATAAATCGA
Found at i:69016151 original size:17 final size:19
Alignment explanation
Indices: 69016109--69016144 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
69016099 TGACTAAAGA
69016109 AATAATAA--GAAAACAAT
1 AATAATAAGTGAAAACAAT
69016126 AATAATAAGTGAAAA-AAT
1 AATAATAAGTGAAAACAAT
69016144 A
1 A
69016145 TACTAAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.47
18 4 0.24
19 5 0.29
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.19
Consensus pattern (19 bp):
AATAATAAGTGAAAACAAT
Found at i:69019699 original size:18 final size:18
Alignment explanation
Indices: 69019676--69019716 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
69019666 TAGCCATCTA
69019676 TATATTGTAGACTTCACC
1 TATATTGTAGACTTCACC
69019694 TATATTGTAGACTTCACC
1 TATATTGTAGACTTCACC
69019712 T-TATT
1 TATATT
69019717 TCTCTACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (18 bp):
TATATTGTAGACTTCACC
Found at i:69026457 original size:16 final size:16
Alignment explanation
Indices: 69026438--69026472 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
69026428 CCGAAGTAGC
* *
69026438 TTCTTTTATATTATGA
1 TTCTTCTATATAATGA
69026454 TTCTTCTATATAATGA
1 TTCTTCTATATAATGA
69026470 TTC
1 TTC
69026473 CTCCATAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (16 bp):
TTCTTCTATATAATGA
Found at i:69034731 original size:785 final size:779
Alignment explanation
Indices: 69032468--69034774 Score: 3153
Period size: 778 Copynumber: 2.9 Consensus size: 779
69032458 GGTGTTACAA
* * * *
69032468 ACATAATCTGGATTTGGTCAATACCTTCGTAACATAGACACATTGAACACACTGTGAGTCTTCGA
1 ACATTATCTGGATTTGGTCAATACCTTCGTAAAATAGACACA-TGAACACATTGTGAATCTTCGA
** ** *
69032533 TACATCTGGTGGTAATGCCAACTCTTGATGGAAAACATTATCCTTATATACTCATGAAATAGAGA
65 TAGTTCTGGTGGTAATGCCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACAGAGA
** * * *
69032598 CAA-GTTTCAGCAAAAAAAATCAGATAATTCCATTGAA-ACCCTTGATTCCCGTTATTAAACGTA
130 CAAGGTTT-AGTGAAAAAAATCAGATAATTCCATT-AACACCCTTGATTCTCATGATTAAACGTA
* * * * *
69032661 CTTAACATGTTTTAGGTCAAATCATCTACAAAATTCTAGTTTGGTTCTAACTAAGTCTTAATTAA
193 CTTAACAAGTTTTAGGTCAAATCATCTACAGAATTCTAGTTCGGTTCTAACTAAGTCTTCACTAA
** **
69032726 ATCAAAACATTACTTTCTAAGTCAAAAAACACTAAATATAAAACAAGTCTAAAGAAACTGTGAAC
258 ATCAAAACATTACTTTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGAAC
* * *
69032791 TTAACGAGTGGTTTCAAAACAATTAGGCTAGGTGGATACTTAGCTAAAGAGTCTGCCAAACCCTA
323 TTAACGAGTGCTTTCAAAAC-ATTTGGGT-GGT-GATACTTAGCTAAAGAGTCTGCCAAACCCTA
* * * *
69032856 CAGTTCGCTAAAAATTAGAGTTTACAAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAAA
385 GAGTTCGCAAAAAATTGGAG-TTCCAAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAAA
*
69032921 AAATACTTTACTTACTCAATTCTACCCTTGACTTTACCAATTATACGCTAGACAATTA-CTGAAT
449 AAATACTTTACTTACTCAATTCTACCCTTGACTTTACCAATTATACGCCAGACAA-TAGCTGAAT
* * * *
69032985 ACTGGGTCTCTACCGGGCAGATAGTTACAATTCTTCCCCACTTAGAAAATATCATGCTTGATATT
513 AATGGGTCTCTGCCGGGCAGATAGTTACAATTC-TCCCCACTTAGAAAATTTCATCCTTGATATT
* * * *
69033050 TATACTTATGAAAACTTGAGTGAATTGTTCTTTCATTAAACATTCCCTTTCCCAAGTAGCTTCTT
577 TATACTTGTGAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTCTT
* * * *
69033115 CTATATTATGATTCATACATAACACTTTTACTAATGTGATCCTCTTATTTCTTAACTCTTTCAGT
642 CTATATTATGATTCCTCCATAACACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACT
* * * * *
69033180 TTTTTGGCTAAAATGTAAACAGGCTCCTTTTCATAAGATAGATTTGACTCTACTTCTGTGTCTTC
707 TCTTTGGCTAAAATGCAAACAGGCTCCTCTACATAACATAGATTTGACTCTACTTCTGTGTCTTC
*
69033245 AATTTATT
772 AATTTATG
* * * ** *
69033253 ACAAATTATTTGGATTTGATTAATACCTTCGTAACAA-AGACATGTGAAACATATTGTGAATCTT
1 AC--ATTATCTGGATTTGGTCAATACCTTCGTAA-AATAGACACATG-AACACATTGTGAATCTT
* * *
69033317 CAATAGTTCTGGTGGTAATGCCAACTCTTGATGGCCAACAATATCCTTATATACTCACGAAACAG
62 CGATAGTTCTGGTGGTAATGCCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACAG
* * *
69033382 AGACAAGGTTTAGTG-GAAAAATTAGATAATTCCATTGACACCCTTGA-T-TCAGTGATTAAACG
127 AGACAAGGTTTAGTGAAAAAAATCAGATAATTCCATTAACACCCTTGATTCTCA-TGATTAAACG
* * * *
69033444 CACTTAACAAGTTTAAGGTCAAATCATGTACAGAATTCGAGTTCGGTTCTAACTAAGTCTTCACT
191 TACTTAACAAGTTTTAGGTCAAATCATCTACAGAATTCTAGTTCGGTTCTAACTAAGTCTTCACT
* * *
69033509 AAATCAAAACATTACTTTCCAAGTCATCAGACACTAAACATAAAACAAGTCTAATCAAACTGTGA
256 AAATCAAAACATTACTTTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGA
* * * *
69033574 ACTTAACGAGTGCTTTCAAAACATTT--GT-G-GATACCTAGCTAAGGAGTTTGCCCAACCCTAG
321 ACTTAACGAGTGCTTTCAAAACATTTGGGTGGTGATACTTAGCTAAAGAGTCTGCCAAACCCTAG
* *
69033635 AGTTTGCAAAAAATTGGAGTTTCCAAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAACA
386 AGTTCGCAAAAAATTGGAG-TTCCAAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAAAA
* *
69033700 AATACTTTACTTACTCAATTCTACCCTTAATTTTACCAATTATACGCCAGACAATAGCTGAATAA
450 AATACTTTACTTACTCAATTCTACCCTTGACTTTACCAATTATACGCCAGACAATAGCTGAATAA
* * *
69033765 TGGGTCTATGCCGTGCAGATAGTTACAATTCTACCCCACATAGAAAATTTCATCCTTGATATTTA
515 TGGGTCTCTGCCGGGCAGATAGTTACAATTCT-CCCCACTTAGAAAATTTCATCCTTGATATTTA
* * * * * *
69033830 TACTTGTAAAAAGTTGAGTGTATTGTACTTTTATTATACTTTCTCTTTCCCAAGTAGCTACTTCT
579 TACTTGTGAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTCTTCT
* * * *
69033895 ATATTATGATTCCTCCATAATATTTTTACTAATACGATCCTCTTATTTCTTAACTCTTTTACTTC
644 ATATTATGATTCCTCCATAACACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTC
* *
69033960 TTTGGCTAAAATGCAAACAGGCTCCTCTACATAACATAGATTTGGCTCTACTTTTGTGTCTTCAA
709 TTTGGCTAAAATGCAAACAGGCTCCTCTACATAACATAGATTTGACTCTACTTCTGTGTCTTCAA
69034025 TTTGTATG
774 -TT-TATG
* *
69034033 ACATTATCTGGATTTGGTCAATACCTTCTTAAAATAGACACATAGAACACATTGTGAATCTTTGA
1 ACATTATCTGGATTTGGTCAATACCTTCGTAAAATAGACACAT-GAACACATTGTGAATCTTCGA
* *
69034098 TAGTTCTGGAGGTAATGCCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACGGAGA
65 TAGTTCTGGTGGTAATGCCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACAGAGA
*
69034163 CAAGGTTTAGTGAAAAAAATCATATAATTCCATTAACACCCTTGATTCTCATGATTAAACGTACT
130 CAAGGTTTAGTGAAAAAAATCAGATAATTCCATTAACACCCTTGATTCTCATGATTAAACGTACT
* * * *
69034228 TAAAAAGTTTTAGGTCAAATCATCAATAGAATTCTAGTTCGGTTCTAACAAAGTCTTCACTAAAT
195 TAACAAGTTTTAGGTCAAATCATCTACAGAATTCTAGTTCGGTTCTAACTAAGTCTTCACTAAAT
* * * * *
69034293 CCAAACATTACTTTCTAAGTCATCAAACACTAAATAGAAAACAAGTGTAATCAAACTGTTAATTT
260 CAAAACATTACTTTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGAACTT
* * *
69034358 AAAGAGTTCTTTCAGAACATTTGGGGTGGGTGATACTTAGCTAAAGAGTCTGCCAAACCCTAGAG
325 AACGAGTGCTTTCAAAACATTT-GGGT-GGTGATACTTAGCTAAAGAGTCTGCCAAACCCTAGAG
* *
69034423 TTCACCAAAAATTGGAGTTCGCAAAATGGCTAATCCCACAAAGTGCTCTA-TTAGCCAAAAAAAA
388 TTCGCAAAAAATTGGAGTTC-CAAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAAAAAA
** * * *
69034487 TACGGTACTTACTCAATTCTACCCTTGAGTTTACCAATTATACGCCAGACAATAGTTGAATATTG
452 TACTTTACTTACTCAATTCTACCCTTGACTTTACCAATTATACGCCAGACAATAGCTGAATAATG
* * * * * ** * *
69034552 GGTTTCTGCAGGGCAGACAGTTTCAATTCTCCACCATTTAGTTAATTTCAACCTTGTTATTTATA
517 GGTCTCTGCCGGGCAGATAGTTACAATTCTCC-CCACTTAGAAAATTTCATCCTTGATATTTATA
* * * *
69034617 CTTGTGAAAAGTTGAGTGTGTTTTTCTGTCATTAAACTTTCCCTTTCCCAAGTAGCTTTTTCTAT
581 CTTGTGAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTCTTCTAT
*
69034682 ATTATGATTCCTCCATAACACTTTTACTAAGGCGATCCTCTTATTTCTTAACTCTTTCACTTCTT
646 ATTATGATTCCTCCATAACACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTCTT
*
69034747 TGGCTAAATTGCAAACAGGCTCCTCTAC
711 TGGCTAAAATGCAAACAGGCTCCTCTAC
69034775 TTGGATTTGG
Statistics
Matches: 1329, Mismatches: 169, Indels: 48
0.86 0.11 0.03
Matches are distributed among these distances:
777 5 0.00
778 494 0.37
779 31 0.02
780 154 0.12
781 3 0.00
782 1 0.00
783 2 0.00
784 6 0.00
785 416 0.31
786 102 0.08
787 110 0.08
788 5 0.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (779 bp):
ACATTATCTGGATTTGGTCAATACCTTCGTAAAATAGACACATGAACACATTGTGAATCTTCGAT
AGTTCTGGTGGTAATGCCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACAGAGAC
AAGGTTTAGTGAAAAAAATCAGATAATTCCATTAACACCCTTGATTCTCATGATTAAACGTACTT
AACAAGTTTTAGGTCAAATCATCTACAGAATTCTAGTTCGGTTCTAACTAAGTCTTCACTAAATC
AAAACATTACTTTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGAACTTA
ACGAGTGCTTTCAAAACATTTGGGTGGTGATACTTAGCTAAAGAGTCTGCCAAACCCTAGAGTTC
GCAAAAAATTGGAGTTCCAAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAAAAAATACT
TTACTTACTCAATTCTACCCTTGACTTTACCAATTATACGCCAGACAATAGCTGAATAATGGGTC
TCTGCCGGGCAGATAGTTACAATTCTCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGT
GAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTCTTCTATATTAT
GATTCCTCCATAACACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCT
AAAATGCAAACAGGCTCCTCTACATAACATAGATTTGACTCTACTTCTGTGTCTTCAATTTATG
Found at i:69035444 original size:725 final size:721
Alignment explanation
Indices: 69034041--69036265 Score: 2938
Period size: 775 Copynumber: 3.0 Consensus size: 721
69034031 TGACATTATC
* * * * * *
69034041 TGGATTTGGTCAATACCTTCTTAAAATAGACACATAGAACACATTGTGAATCTTTGATAGTTCTG
1 TGGATTTGGTCAATACCTTCGTAACATAGACGCATGGAACACATTGTGAATCTTCGATAGTTCAG
* *
69034106 GAGGTAATGCCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACGGAGACAAGGTTT
66 GTGGTAATG-CAACTCTTGATGGCCAACATTATCCTTATATACTTATGAAACGGAGACAAGGTTT
* *
69034171 AGTGAAAAAAATCATATAATTCCATTAACACCCTTGATTCTCATGATTAAACGTACTTAAAAAGT
130 AGTG--AAAAATCAAATAATTCCATTGACACCCTTGATTCTCATGATTAAACGTACTTAAAAAGT
* *
69034236 TTTAGGTCAAATCATCAATAGAATTCTAGTTCGGTTCTAACAAAGTCTTCACTAAATCCAAACAT
193 TTTAGGTCAAATCATCAACAGAATTCTAGTTCGATTCT-----A------ACTAAATCCAAACAT
* * * *
69034301 TACTTTCTAAGTCATCAAACACTAAATAGAAAACAAGTGTAATCAAACTGTTAATTTAAAGAGTT
247 TACTTTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGAACTTAAAGAGTT
* * *
69034366 CTTTCAGAACATTTGGGGTGGGT-GATACTTAGCTAAAGAGTCTGCCAAACCCTAGAGTTCACCA
312 CTTTCAAAACATTTGGGGTGGGTGGATACTTAGCTAAAGAGTCTGCCAAACCCTAAAGTTCGCCA
* **
69034430 AAAATTGGAGTTCGCAAAATGGCTAATCCCACAAAGTGCTCTA-TTAGCCAAAAAAAATACGGTA
377 AAAATTGGAGTTCCCAAAATGGCTAAT-CCACAAAGTGCTCTATTTAGCC--AAAAAATACAATA
* * * *
69034494 CTTACTCAATTCTACCCTTGAGTTTACCAATTATACGCCAGACAAT-AGTTGAATATTGGGTTTC
439 CTTACTCAATTCTACCCTTGGGTTTACCAATTATACGCCAAACAATAACTT-AATATTGGGTCTC
* * * ** *
69034558 TG-CAGGGCAGACAGTTTCAATTCTCCACCATTTAGTTAATTTCAACCTTGTTATTTATACTTGT
503 TGCCA-GGCAGACAGTTACAATTCTTCGCCATTTAGAAAATTTCAACCTTGATATTTATACTTGT
* * *
69034622 GAAAAGTTGAGTGTGTTTTTCTGTCATTAAACTTTCCCTTTCCCAAGTAGCTTTTTCTATATTAT
567 GAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTTTTCTATATTAT
*
69034687 GATTCCTCCATAACACTTTTACTAAGGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCT
632 GATTCCTCCATAACACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCT
69034752 AAATTGCAAACAGGCTCCTCTAC-T
697 AAATTGCAAACAGGCTCCTCTACAT
*
69034776 TGGATTTGGTCAATACCTTCGTAACATAGACGCATGGAACACATTGTGAATCTTCGATAGTTCGG
1 TGGATTTGGTCAATACCTTCGTAACATAGACGCATGGAACACATTGTGAATCTTCGATAGTTCAG
* * *
69034841 GTGGTAATGCTAACTTTTGATGGCCAACATTATCCTTATATACTTTTGAAATGGAGACAAGGTTT
66 GTGGTAATGC-AACTCTTGATGGCCAACATTATCCTTATATACTTATGAAACGGAGACAAGGTTT
* * *
69034906 AGTGAACAAATCAGATAATTCCATTGACACCCTTGATTCCCATGATTAAACGTACTTTAAAAGTT
130 AGTGAA-AAATCAAATAATTCCATTGACACCCTTGATTCTCATGATTAAACGTACTTAAAAAGTT
69034971 TTAGGTCAAATCATCAACAGAATTCTAGTTCGATTCTAACTAAATCCAAACATTACTTTCTAAGT
194 TTAGGTCAAATCATCAACAGAATTCTAGTTCGATTCTAACTAAATCCAAACATTACTTTCTAAGT
* *
69035036 CATCAAACACTAAATATAAAACAAGTCTATTCAAACTGTGAACTTAACGAGTTCTTTCAAAACAT
259 CATCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGAACTTAAAGAGTTCTTTCAAAACAT
* * *
69035101 TTAGGGTGGGTGGATACTTAGCTAAAGAGTATGCCAAACCCTAAAGTTCGCCAAAAATTAGAGTT
324 TTGGGGTGGGTGGATACTTAGCTAAAGAGTCTGCCAAACCCTAAAGTTCGCCAAAAATTGGAGTT
* * * **
69035166 CCCAAAATTGCTAATCCAACGAAGTGCTTTATTTAGCCAAAACATATACTTTACTTACTCAATTC
389 CCCAAAATGGCTAATCC-ACAAAGTGCTCTATTTAGCCAAAA-A-ATACAATACTTACTCAATTC
69035231 TACCCTTGGGTTTACCAATTATACGCCAAACAATAACTTAATATTGGGTCTCTGCCAGGCAGACA
451 TACCCTTGGGTTTACCAATTATACGCCAAACAATAACTTAATATTGGGTCTCTGCCAGGCAGACA
* *
69035296 ATTACAATTCTTCGCCATTTAGAAAATTTCAACCTTGATATTTATATTTGTGAAAAGTTGAGTGT
516 GTTACAATTCTTCGCCATTTAGAAAATTTCAACCTTGATATTTATACTTGTGAAAAGTTGAGTGT
*
69035361 ATTGTTCTTTCATTAAACTTTCCCTCTCCCAAGTAGCTTTTTCTATATTATGATTCCTCCATAAC
581 ATTGTTCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTTTTCTATATTATGATTCCTCCATAAC
*
69035426 ACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTT-TTTCGGCTAAATTGCAAACAT
646 ACTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTT-GGCTAAATTGCAAACAG
69035490 GCTCCTCTACATAAGATAGATT
710 GCTCCTCTAC---------A-T
* * *
69035512 TGGCTCTAGTTCTATGTCTTCAATTTGTACCACATTATCTGGATTTGGTTAATACCTTCGTAACA
1 TGG----A--T-T-TG--GTCAA----TA-C-C--T-TC--------G-T-A-A-CATAG--AC-
*
69035577 TAGACACGTGGAACACATTGTGAATCTTCAATAGTTCAGGTGGTAATGGCAACTCTTGATGGCCA
32 --G-CA--TGGAACACATTGTGAATCTTCGATAGTTCAGGTGGTAAT-GCAACTCTTGATGGCCA
* *
69035642 ACATTATCCGTATATACTTATGAAACGGAGACAAGGTTTAGTGGAAAAATCAAATAATTCCAATG
91 ACATTATCCTTATATACTTATGAAACGGAGACAAGGTTTAGT-GAAAAATCAAATAATTCCATTG
* * * ** * *
69035707 ACACCCTTGTTTCTCAGGATTAAACGTACTGAAAATTTTTTAGGTCAAATCATCTACTGAATTCT
155 ACACCCTTGATTCTCATGATTAAACGTACTTAAAAAGTTTTAGGTCAAATCATCAACAGAATTCT
* * *
69035772 ATTTCGTTTCTAACTAAATCCAAACATTACCTTCTAAGTCATCAAACACTAAATATAAAACAAGT
220 AGTTCGATTCTAACTAAATCCAAACATTACTTTCTAAGTCATCAAACACTAAATATAAAACAAGT
* *
69035837 CTAATCAAACTGTGAACTTAAGGAGTTCTTTCAAAACATTTGGGGTGGGTGGACACTTAGCTAAA
285 CTAATCAAACTGTGAACTTAAAGAGTTCTTTCAAAACATTTGGGGTGGGTGGATACTTAGCTAAA
* *
69035902 GAGTCTGCCAAACCCTAAAGTTTGCCAAAAATTGGATTTCCCAAAATGGCTAATTCCACAAAGTG
350 GAGTCTGCCAAACCCTAAAGTTCGCCAAAAATTGGAGTTCCCAAAATGGCTAA-TCCACAAAGTG
* * *
69035967 CTCTATTTAG-CAAAAAA-AAAATACTTACTCAATTATACTCTTGGGTTTACCAATTATACGCCA
414 CTCTATTTAGCCAAAAAATACAATACTTACTCAATTCTACCCTTGGGTTTACCAATTATACGCCA
* * *
69036030 AACAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGTTATAATTCTTCGCCATTTAGAAAATT
479 AACAATAACTTAATATTGGGTCTCTGCCAGGCAGACAGTTACAATTCTTCGCCATTTAGAAAATT
69036095 TCAACCTTGATATTTATACTTGTGAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTC
544 TCAACCTTGATATTTATACTTGTGAAAAGTTGAGTGTATTGTTCTTTCATTAAACTTTCCCTTTC
*
69036160 CCAAGTAGC-TTTTCTATATTATGATTCCTCCATAACACTTTTACTAATGCGATCTTCTTATTTC
609 CCAAGTAGCTTTTTCTATATTATGATTCCTCCATAACACTTTTACTAATGCGATCCTCTTATTTC
69036224 TTAACTCTTTCACTTCTTTGGCTAAATTGCAAACAGGCTCCT
674 TTAACTCTTTCACTTCTTTGGCTAAATTGCAAACAGGCTCCT
69036266 TGTAACGCCC
Statistics
Matches: 1326, Mismatches: 100, Indels: 93
0.87 0.07 0.06
Matches are distributed among these distances:
723 101 0.08
724 77 0.06
725 264 0.20
726 5 0.00
729 1 0.00
733 2 0.00
734 90 0.07
735 121 0.09
736 4 0.00
740 1 0.00
742 1 0.00
743 1 0.00
744 2 0.00
746 4 0.00
750 2 0.00
751 1 0.00
752 1 0.00
754 1 0.00
755 2 0.00
763 1 0.00
764 1 0.00
765 1 0.00
766 1 0.00
767 3 0.00
769 2 0.00
770 91 0.07
771 177 0.13
772 2 0.00
773 3 0.00
774 5 0.00
775 350 0.26
776 8 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (721 bp):
TGGATTTGGTCAATACCTTCGTAACATAGACGCATGGAACACATTGTGAATCTTCGATAGTTCAG
GTGGTAATGCAACTCTTGATGGCCAACATTATCCTTATATACTTATGAAACGGAGACAAGGTTTA
GTGAAAAATCAAATAATTCCATTGACACCCTTGATTCTCATGATTAAACGTACTTAAAAAGTTTT
AGGTCAAATCATCAACAGAATTCTAGTTCGATTCTAACTAAATCCAAACATTACTTTCTAAGTCA
TCAAACACTAAATATAAAACAAGTCTAATCAAACTGTGAACTTAAAGAGTTCTTTCAAAACATTT
GGGGTGGGTGGATACTTAGCTAAAGAGTCTGCCAAACCCTAAAGTTCGCCAAAAATTGGAGTTCC
CAAAATGGCTAATCCACAAAGTGCTCTATTTAGCCAAAAAATACAATACTTACTCAATTCTACCC
TTGGGTTTACCAATTATACGCCAAACAATAACTTAATATTGGGTCTCTGCCAGGCAGACAGTTAC
AATTCTTCGCCATTTAGAAAATTTCAACCTTGATATTTATACTTGTGAAAAGTTGAGTGTATTGT
TCTTTCATTAAACTTTCCCTTTCCCAAGTAGCTTTTTCTATATTATGATTCCTCCATAACACTTT
TACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCTAAATTGCAAACAGGCTCCT
CTACAT
Found at i:69039335 original size:27 final size:27
Alignment explanation
Indices: 69039304--69039515 Score: 298
Period size: 27 Copynumber: 7.9 Consensus size: 27
69039294 ACCCTCAAAT
*
69039304 TGGTAAAATGACCGTTTTGCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
*
69039331 TGGTAAAATGACTGTTTTGCCCTTATC
1 TGGTAAAATGACTGTTTTGCCCTTATG
* * *
69039358 TGGTAAAATGATTGTTTTACCCTTATA
1 TGGTAAAATGACTGTTTTGCCCTTATG
* * *
69039385 TGGAAAAATGACTATTTTGTCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
* *
69039412 TGGTAAAATGACTATTTTTCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
* *
69039439 TGGTAAAATGATTGTTTTTCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
* *
69039466 TGGTAAAATGATTGTTTTTCCCTTATG
1 TGGTAAAATGACTGTTTTGCCCTTATG
69039493 TGGTAAAATGACTGTTTTGCCCT
1 TGGTAAAATGACTGTTTTGCCCT
69039516 ATATAATGTA
Statistics
Matches: 167, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 167 1.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTGCCCTTATG
Found at i:69039892 original size:18 final size:18
Alignment explanation
Indices: 69039869--69039946 Score: 86
Period size: 18 Copynumber: 4.3 Consensus size: 18
69039859 TTGCATACTG
*
69039869 TTTACTGACACTGCACTA
1 TTTACTGATACTGCACTA
* *
69039887 TTTACTGATA-TGACATTG
1 TTTACTGATACTG-CACTA
69039905 TTTACTGATACTGCACTA
1 TTTACTGATACTGCACTA
* * *
69039923 TTTATTGTTACTGCACTG
1 TTTACTGATACTGCACTA
69039941 TTTACT
1 TTTACT
69039947 TTTACTTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
17 2 0.04
18 45 0.92
19 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (18 bp):
TTTACTGATACTGCACTA
Found at i:69039943 original size:36 final size:36
Alignment explanation
Indices: 69039865--69039946 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
69039855 GGACTTGCAT
69039865 ACTGTTTACTGACACTGCACTATTTACTGATATGAC
1 ACTGTTTACTGACACTGCACTATTTACTGATATGAC
* * * *
69039901 ATTGTTTACTGATACTGCACTATTTATTGTTACTG-C
1 ACTGTTTACTGACACTGCACTATTTACTGATA-TGAC
69039937 ACTGTTTACT
1 ACTGTTTACT
69039947 TTTACTTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
36 38 0.95
37 2 0.05
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (36 bp):
ACTGTTTACTGACACTGCACTATTTACTGATATGAC
Found at i:69039951 original size:18 final size:18
Alignment explanation
Indices: 69039903--69039952 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
69039893 GATATGACAT
**
69039903 TGTTTACTGATACTGCAC
1 TGTTTACTTTTACTGCAC
*
69039921 TATTTA-TTGTTACTGCAC
1 TGTTTACTT-TTACTGCAC
69039939 TGTTTACTTTTACT
1 TGTTTACTTTTACT
69039953 TAATTGGGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 23 0.88
19 2 0.08
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (18 bp):
TGTTTACTTTTACTGCAC
Found at i:69040934 original size:16 final size:17
Alignment explanation
Indices: 69040908--69040940 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
69040898 TCGGCCGAAA
69040908 TGGGCCGTGTGGGCCCC
1 TGGGCCGTGTGGGCCCC
69040925 TGGG-CGTGTGGGCCCC
1 TGGGCCGTGTGGGCCCC
69040941 ACACAAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.00, C:0.33, G:0.48, T:0.18
Consensus pattern (17 bp):
TGGGCCGTGTGGGCCCC
Found at i:69056253 original size:42 final size:42
Alignment explanation
Indices: 69056172--69056254 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
69056162 GGATCTTACA
* * *
69056172 TCGATGCCATATCCTAGATAAGGTCTTATATGAAATCTCATT
1 TCGATGCCATATCCTAGACAAGGTCTTACACGAAATCTCATT
* ** *
69056214 TCGATGCCATGTCCTAGACGCGGTCTTACACGAATTCTCAT
1 TCGATGCCATATCCTAGACAAGGTCTTACACGAAATCTCAT
69056255 ATCAACGTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.33
Consensus pattern (42 bp):
TCGATGCCATATCCTAGACAAGGTCTTACACGAAATCTCATT
Found at i:69060475 original size:786 final size:782
Alignment explanation
Indices: 69058963--69061511 Score: 3742
Period size: 786 Copynumber: 3.2 Consensus size: 782
69058953 GTGTTGCAGT
* *
69058963 AAAATGGCTAATCCCACAAAGTGCTCTATTTAGGCAAAATAAATACTTTACTTACTCAATTCTAC
1 AAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAACAAATACTTTACTTACTCAATTCTAC
* * * *
69059028 CCTTGACTTTACCAATTATACTCCATACAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGCT
66 CCTTGACTTTACCAATTATACGCCAAAAAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGTT
69059093 ACAATTCTCCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTATT
131 ACAATTCTCCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTATT
* *
69059158 GTTCTTTCATTAAATTGTCCCTTTCCCAAGTAGCTTCTTCTATATTATGATTCCTCCATAACACA
196 GTTCTTTCATTAAATT-TCCCTTTCGCAAGTAGCTTCTTCTATATTATGATTCCTCCATAACACT
* *
69059223 TTTACTAATGG-GATCCTCTTATTTCTTAACTCTTTCACTTCTTTGACTAAAATGCAAACAAGCT
260 TTTACTAA-GGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCTAAAATGCAAACAGGCT
* *
69059287 CCTCTTCATAAGATAGATTTGGCTCTACTTCTGTGTCTTCAATTTGTACCACATTATCTGGATTT
324 CCTCTTCATAAGATAGATTTGGCTCTACTTCTATGTCTTTAATTTGTACCACATTATCTGGATTT
*
69059352 GGTCAATACCTTCGTAACATAGACACGTGGAACACATTGTGAATCTTCGATAGTTT-TGGTGGTA
389 GGTCAATACCTTCGTAACATAGACACGTGGAACACATTGTGAATCTTTGATA-TTTCTGGTGGTA
* * * *
69059416 A-AGCTAACTTTTGATGGCCAACATTATCCTTATATACTCATGAAATGGAGACAAGGTTTAGTGG
453 ATA-CCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACGAAGACAAGGTTTAGTGG
* * *
69059480 AACAATCATAA-AATTCCATTGACACCCTTGATTCCTATGATTAAACG-TACTTAAGAAGTTTTA
517 AAAAATCA-AATAATTCCATTGACACCCTTGATTCC-CT-ATTAAATGCT-CTTAAGAAGTTTTA
* * * * *
69059543 GTTCAAATCATCTACAGAATTCTAGTCTGGTTCTAACTAAGTCTTAACTAAATTCAAACAGTATT
578 GGTCAAATCATCTACAGAATTCTAGTTTGGTTCTAACTAAGTCTTAACTAAATCCAAACATTACT
* * * * *
69059608 TTCTAAGTAATCAAACACTAAATATAAAACAAGTCTATTCAAACTGTAAACATAACGAGTTCTTT
643 TTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAAATGTGAACTTAACGAGTTCTTT
* * * *
69059673 CAAAACATTTGGGGTGGGT-ATCCAGTTAGCTAAATAGTCTGCCAAACCCTAGAGTTCACCAAAA
708 CAAAACATTTGGGGTGGGTGAT--ACTTTGCTAAAGAGTCTGCCAAACCCTAGAGTTCGCCAAAA
* *
69059737 ATTTGAGTTTGC
771 ATTAGAGTTCGC
*
69059749 AAAATGGGTAATCCCACAAAGTGCTCTATTTAGCCAAAGA-AAATACTTTACTTACTCAATTCTA
1 AAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAA-ACAAATACTTTACTTACTCAATTCTA
* * * * *
69059813 CCCTTGACTTTACCAATTGTACGCCAAAAAATAATTGAATATTTGGTCTCTACCAGGCAGACAGT
65 CCCTTGACTTTACCAATTATACGCCAAAAAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGT
* ** * *
69059878 TAAAATTCTCTTCCACTTAGAAAATTTCATTCTTGATATTTATACTTGTGAAAATTTGAGTGTAT
130 TACAATTCTCCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTAT
* * * *
69059943 TTTTCTTTCATTAAACTTTCCCTTTCGCAAGTAGCTTCTTCTATATGATGATTCTTCCATAACAT
195 TGTTCTTTCATTAAA-TTTCCCTTTCGCAAGTAGCTTCTTCTATATTATGATTCCTCCATAACAC
* *
69060008 TTTTACTAAGGCAATCCTCTTATTTCTTAACTCTTCCACTTCTTTGGCTAAAATGCAAACAGGCT
259 TTTTACTAAGGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCTAAAATGCAAACAGGCT
* * * *
69060073 CCTCTACATAAGATAGATTTGGCTTTACTTCTATGTCTTTAATTTGAACCACATTATTTGGATTT
324 CCTCTTCATAAGATAGATTTGGCTCTACTTCTATGTCTTTAATTTGTACCACATTATCTGGATTT
*
69060138 GGTCAATACCTTCGTAACATAGAAACGTGGAACACATTGTGAATCTTTGATATTTCTGGTGGTAA
389 GGTCAATACCTTCGTAACATAGACACGTGGAACACATTGTGAATCTTTGATATTTCTGGTGGTAA
* * * *
69060203 TTCCAACTCTTGATGACCAACATTATCCTTATAAACTCATGAAACGAAGACAAAGTTTAGTGGAA
454 TACCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACGAAGACAAGGTTTAGTGGAA
*
69060268 AAATCAAATAATTCCATTAACACCCTTGATTGCCCTACTTAAATGCTCTTAAGAAGTTTTAGGTC
519 AAATCAAATAATTCCATTGACACCCTTGATT-CCCTA-TTAAATGCTCTTAAGAAGTTTTAGGTC
* *
69060333 AAATCATCTACAGAATTCTAGTTTGATTCTAACTAAGTCTTAACTAAATCCAAAAATTACTTTCT
582 AAATCATCTACAGAATTCTAGTTTGGTTCTAACTAAGTCTTAACTAAATCCAAACATTACTTTCT
* * * * * *
69060398 AAGTCATCAAACACTAAACATAAAACAAGCCTAATCTAATTGTGAACTTAACAAGTTCTTTTAAA
647 AAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAAATGTGAACTTAACGAGTTCTTTCAAA
*
69060463 ACATTTGGGGTGGGTCGATACTTTGCTAAAGAGTCTGCCAAA-CCTAGAGTTCGCCAAAAACTAG
712 ACATTTGGGGTGGGT-GATACTTTGCTAAAGAGTCTGCCAAACCCTAGAGTTCGCCAAAAATTAG
69060527 AGTTCGC
776 AGTTCGC
* *
69060534 AAAATGGCTAATCCCACAAAATGCTCTATTTAGCCAAAA-AAATACTTTACTTACTCAATTCTGC
1 AAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAACAAATACTTTACTTACTCAATTCTAC
* * * *
69060598 CCTTTACTTTACCAATTATATGCCAAACAATAACTGAATATTGGGTCTCTGCCGGGCAGTCAGTT
66 CCTTGACTTTACCAATTATACGCCAAAAAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGTT
* * *
69060663 ACAATTCTCCCCCACTTAAAAAATTTCATCATTTATATTTATACTTGTGAAAAGTTGAGTGTATT
131 ACAATTCTCCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTATT
*
69060728 GTTCTTTCATTAAAATTTCCATTTTCG-AAGTAGCTTCTTCT-TCATTATGATTCCT-CATAACA
196 GTTCTTTCATT-AAATTTCC-CTTTCGCAAGTAGCTTCTTCTAT-ATTATGATTCCTCCATAACA
* *
69060790 CTTTTACTAATGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTAGCTAAAATGCAAACAGGC
258 CTTTTACTAAGGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCTAAAATGCAAACAGGC
69060855 TCCTCTTCATAAGATAGATTTGGCTCTACTTCTATGTCTTCT-ATTTGTACCACATTATCTGGAT
323 TCCTCTTCATAAGATAGATTTGGCTCTACTTCTATGTCTT-TAATTTGTACCACATTATCTGGAT
** * * * * * *
69060919 TTAATCAATACCTTCATGACATAGACATGTGGAACACATTGTGAGT-TTTCGATAGTTCTTGTGG
387 TTGGTCAATACCTTCGTAACATAGACACGTGGAACACATTGTGAATCTTT-GATATTTCTGGTGG
* *
69060983 TAATACCAACTCTTGATGGCCAACATTATCCTTACATACTCATGAAAC-AGAGACAAGGTTTGGT
451 TAATACCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACGA-AGACAAGGTTTAGT
* * * *
69061047 GGAAAAATCAGATAATTCCATTGACACCTTTGATTCCCATGATTAAATGCACTTAACAAGTTTTA
515 GGAAAAATCAAATAATTCCATTGACACCCTTGATTCCC-T-ATTAAATGCTCTTAAGAAGTTTTA
* * *
69061112 GGTCAAATCATCTATAGAATTCTAGCTCGGTTCTAACTAAGTCTTAACTAAATCCAAACATTACT
578 GGTCAAATCATCTACAGAATTCTAGTTTGGTTCTAACTAAGTCTTAACTAAATCCAAACATTACT
69061177 TTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAAATGTGAACTTAACGAGTTCTTT
643 TTCTAAGTCATCAAACACTAAATATAAAACAAGTCTAATCAAAATGTGAACTTAACGAGTTCTTT
* * *
69061242 CAAAACAATTGGGGTGGGTGGATACTTTGCTAAAGAGTCTGCCAAACACTAGAGCTCGCCAAAAA
708 CAAAACATTTGGGGTGGGT-GATACTTTGCTAAAGAGTCTGCCAAACCCTAGAGTTCGCCAAAAA
*
69061307 TTGGAGTTCGC
772 TTAGAGTTCGC
* * * *
69061318 AAAATGGCTAATCCCACAAAGTGCTTTATGTAGCCAAAACAAATACGTTACTTACTCAATTTTAC
1 AAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAACAAATACTTTACTTACTCAATTCTAC
* * * *
69061383 CATTGACTTTACCAATTATACACCAGAAAATAACTGAATATTAGGTCTCTGCCGGGCAGACAGTT
66 CCTTGACTTTACCAATTATACGCCAAAAAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGTT
* *
69061448 ACAATTCTTCCCCACTTAGAAAATTCCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTAT
131 ACAATTCTCCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTAT
69061512 CTTTTGTTCA
Statistics
Matches: 1583, Mismatches: 159, Indels: 43
0.89 0.09 0.02
Matches are distributed among these distances:
782 7 0.00
783 450 0.28
784 240 0.15
785 215 0.14
786 663 0.42
787 6 0.00
788 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (782 bp):
AAAATGGCTAATCCCACAAAGTGCTCTATTTAGCCAAAACAAATACTTTACTTACTCAATTCTAC
CCTTGACTTTACCAATTATACGCCAAAAAATAACTGAATATTGGGTCTCTGCCGGGCAGACAGTT
ACAATTCTCCCCCACTTAGAAAATTTCATCCTTGATATTTATACTTGTGAAAAGTTGAGTGTATT
GTTCTTTCATTAAATTTCCCTTTCGCAAGTAGCTTCTTCTATATTATGATTCCTCCATAACACTT
TTACTAAGGCGATCCTCTTATTTCTTAACTCTTTCACTTCTTTGGCTAAAATGCAAACAGGCTCC
TCTTCATAAGATAGATTTGGCTCTACTTCTATGTCTTTAATTTGTACCACATTATCTGGATTTGG
TCAATACCTTCGTAACATAGACACGTGGAACACATTGTGAATCTTTGATATTTCTGGTGGTAATA
CCAACTCTTGATGGCCAACATTATCCTTATATACTCATGAAACGAAGACAAGGTTTAGTGGAAAA
ATCAAATAATTCCATTGACACCCTTGATTCCCTATTAAATGCTCTTAAGAAGTTTTAGGTCAAAT
CATCTACAGAATTCTAGTTTGGTTCTAACTAAGTCTTAACTAAATCCAAACATTACTTTCTAAGT
CATCAAACACTAAATATAAAACAAGTCTAATCAAAATGTGAACTTAACGAGTTCTTTCAAAACAT
TTGGGGTGGGTGATACTTTGCTAAAGAGTCTGCCAAACCCTAGAGTTCGCCAAAAATTAGAGTTC
GC
Found at i:69060518 original size:16 final size:17
Alignment explanation
Indices: 69060506--69060537 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69060496 TCTGCCAAAC
69060506 CTAGAGTTCGCCAAAAA
1 CTAGAGTTCGCCAAAAA
69060523 CTAGAGTTCG-CAAAA
1 CTAGAGTTCGCCAAAA
69060538 TGGCTAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (17 bp):
CTAGAGTTCGCCAAAAA
Found at i:69063167 original size:77 final size:77
Alignment explanation
Indices: 69063073--69063218 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 77
69063063 GTAACTATAC
* * * * *
69063073 CATGGCCCGAAGCCAAATTAAG-GTAACTTATATCCGAAGTACTGATATCATTGCCCAAAGCCAA
1 CATGGCCCGAAGCCAAA-TAAGTATAACTCATACCCGAAGTACTAATATCATGGCCCAAAGCCAA
69063137 ATCAACCTATATT
65 ATCAACCTATATT
* * * * *
69063150 CATGGCTCGAAGCCAAATCAGTATAACTCATACCCGAAGTGCTAATTTCATGGCCCAAAGCCAAC
1 CATGGCCCGAAGCCAAATAAGTATAACTCATACCCGAAGTACTAATATCATGGCCCAAAGCCAAA
69063215 TCAA
66 TCAA
69063219 TATATCCCCT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
76 3 0.05
77 55 0.95
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.23
Consensus pattern (77 bp):
CATGGCCCGAAGCCAAATAAGTATAACTCATACCCGAAGTACTAATATCATGGCCCAAAGCCAAA
TCAACCTATATT
Found at i:69069436 original size:249 final size:251
Alignment explanation
Indices: 69068976--69069464 Score: 644
Period size: 249 Copynumber: 2.0 Consensus size: 251
69068966 TGTCCCAGCT
* * ** * ** * *
69068976 CGTGTCCAACCCTGTGTAACTCTTTGACTTGGGTCACATGGCCAGCACACATGCCCGTATCGCTA
1 CGTGTCCAACCCTGTATAACTCTCTGACTTGGGTCACACAGCCAACACACACACCCCTATCGCAA
* * * *
69069041 GCCCGTATGCCCTAAAAATGGCCATACACACCCGTGTATCAGGTCGTGTGCTAGGTCGTGCCAAA
66 GCCCGTATGCCCTAAAAATGGCCATACACACCCGTATACCAGGCCGTGTGCTAGGCCGTGCCAAA
69069106 CCTGTAAGGTATACTAACTTATGCCATACGACCAAGTCACACGCCCATGTGTGAGGCCTTGTGGG
131 CCTGTAAGGTATACTAACTTATGCCATACGACCAAGTCACACGCCCATGTGTGAGGCCTTGTGGG
* *
69069171 GCATACTAACTTGATTTTAATTTCAATA-CAGGGGTCAAATGGCCATGTCACTGTC
196 GCATACTAACTTGATTTAAATTTCAATACCAGGGGACAAATGGCCATGTCACTGTC
* *
69069226 CGTGTCCAACCCTGTATAACTCTCTGACTTGGGTCATACAGCCAACACACACACCCCTATGGCAA
1 CGTGTCCAACCCTGTATAACTCTCTGACTTGGGTCACACAGCCAACACACACACCCCTATCGCAA
* * * *
69069291 GCCCGTGTGCCCT-AAAATTGCCATACACGCCCGTATGCCAGGCCGTGTGCTAGGCCGTGCCAAA
66 GCCCGTATGCCCTAAAAATGGCCATACACACCCGTATACCAGGCCGTGTGCTAGGCCGTGCCAAA
* * * * * * *
69069355 CCTGTAGGGTGTACTGAGTTATGCCACT-CGGCCAAGTCACACGCCCGTGTGTGATGCCTTG-GG
131 CCTGTAAGGTATACTAACTTATGCCA-TACGACCAAGTCACACGCCCATGTGTGAGGCCTTGTGG
* * * *
69069418 GAGCATATTGAGTTGATTTAAATTTCAATACCAGGGGACACATGGCC
195 G-GCATACTAACTTGATTTAAATTTCAATACCAGGGGACAAATGGCC
69069465 GTGTAACATA
Statistics
Matches: 204, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
248 3 0.01
249 120 0.59
250 81 0.40
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (251 bp):
CGTGTCCAACCCTGTATAACTCTCTGACTTGGGTCACACAGCCAACACACACACCCCTATCGCAA
GCCCGTATGCCCTAAAAATGGCCATACACACCCGTATACCAGGCCGTGTGCTAGGCCGTGCCAAA
CCTGTAAGGTATACTAACTTATGCCATACGACCAAGTCACACGCCCATGTGTGAGGCCTTGTGGG
GCATACTAACTTGATTTAAATTTCAATACCAGGGGACAAATGGCCATGTCACTGTC
Found at i:69073628 original size:41 final size:41
Alignment explanation
Indices: 69073571--69073713 Score: 207
Period size: 41 Copynumber: 3.5 Consensus size: 41
69073561 AGCTTGGGTT
*
69073571 CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAATTA
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTTA
*
69073612 CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTTA
* ** *
69073653 CGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGTTC
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTTA
* *
69073693 CGAAGGGCCTTCGAGCCAGTG
1 CGAAGGGCTTTTGAGCCAGTG
69073714 GCCTAATCCG
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 34 0.36
41 60 0.64
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGTTA
Found at i:69073691 original size:40 final size:40
Alignment explanation
Indices: 69073569--69073754 Score: 203
Period size: 41 Copynumber: 4.6 Consensus size: 40
69073559 CGAGCTTGGG
*
69073569 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAAT
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCAAACTTAGT
*
69073610 TACGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCAAACTTAGT
* **
69073651 TTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGT
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAACCAAACTTAGT
* * * *** * * *
69073691 TCCGAAGGGCCTTCGAGCCAGTGGCCTAATCCGAGCTTGGT
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAA-CCAAACTTAGT
*
69073732 CTCGAAGGGC-TTTGAGCCAGTGT
1 TTCGAAGGGCTTTTGAGCCAGTGT
69073755 TAAGAATCGT
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 49 0.39
41 77 0.61
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TTCGAAGGGCTTTTGAGCCAGTGTAATAACCAAACTTAGT
Found at i:69073709 original size:81 final size:81
Alignment explanation
Indices: 69073569--69073754 Score: 225
Period size: 81 Copynumber: 2.3 Consensus size: 81
69073559 CGAGCTTGGG
* *
69073569 TTCGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAATTACGAAGGGCTTTTGAGCCAGT-G
1 TTCGAAGGGCTTTTGAGCCAGTG-TAATAACCAAACTTAATTACGAAGGGCCTTCGAGCCAGTGG
69073633 -CTAATAACCAAACTTAGT
65 CCTAAT--CCAAACTTAGT
* ** * *
69073651 TTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGGCCTTCGAGCCAGTGGC
1 TTCGAAGGGCTTTTGAGCCAGTGTAATAACCAAACTTAATTACGAAGGGCCTTCGAGCCAGTGGC
* * *
69073716 CTAATCCGAGCTTGGT
66 CTAATCCAAACTTAGT
*
69073732 CTCGAAGGGC-TTTGAGCCAGTGT
1 TTCGAAGGGCTTTTGAGCCAGTGT
69073755 TAAGAATCGT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
80 13 0.14
81 49 0.54
82 24 0.26
83 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (81 bp):
TTCGAAGGGCTTTTGAGCCAGTGTAATAACCAAACTTAATTACGAAGGGCCTTCGAGCCAGTGGC
CTAATCCAAACTTAGT
Found at i:69073775 original size:81 final size:76
Alignment explanation
Indices: 69073555--69073780 Score: 211
Period size: 81 Copynumber: 2.8 Consensus size: 76
69073545 TCGAGGTGTA
** *
69073555 AATCCGAGCTTGGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCAAACTTAATTACGAAGGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACC-GGCTT-ATTCCGAAGGGC
* *
69073620 TTTTGAGCCAGTGCT
62 CTTCGAGCCAGTGCT
* * * *
69073635 AATAACCAAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGG-CTTA-TTCCGAAGGG
69073700 CCTTCGAGCCAGTGGCCT
61 CCTTCGAGCCAGT-G-CT
* *
69073718 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGTTAAGAATCGTGCTTGATTCCGAAGGG
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATTCCGAAGGG
69073781 TGGTTGTGCC
Statistics
Matches: 120, Mismatches: 16, Indels: 19
0.77 0.10 0.12
Matches are distributed among these distances:
80 18 0.15
81 64 0.53
82 33 0.28
83 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (76 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGGCTTATTCCGAAGGGCCTTC
GAGCCAGTGCT
Found at i:69081161 original size:31 final size:31
Alignment explanation
Indices: 69081112--69081190 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
69081102 GTTTTGGAGA
*
69081112 GTCACACA--CCTGTATGGGTAGGTCGTGTG
1 GTCACACATGCCTGTGTGGGTAGGTCGTGTG
69081141 GTCACACATGCCTGTGTGGGTAGGTCGTGTG
1 GTCACACATGCCTGTGTGGGTAGGTCGTGTG
69081172 GTCACACATGCCTGTGTGG
1 GTCACACATGCCTGTGTGG
69081191 CTTAGGACAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 8 0.17
31 39 0.83
ACGTcount: A:0.15, C:0.22, G:0.35, T:0.28
Consensus pattern (31 bp):
GTCACACATGCCTGTGTGGGTAGGTCGTGTG
Found at i:69086022 original size:12 final size:13
Alignment explanation
Indices: 69085994--69086026 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69085984 TTATTTCTTT
69085994 TTCTCCATCTACC
1 TTCTCCATCTACC
*
69086007 TTCTCC-TCTTCC
1 TTCTCCATCTACC
69086019 TTCTCCAT
1 TTCTCCAT
69086027 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:69087984 original size:40 final size:40
Alignment explanation
Indices: 69087890--69088034 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69087880 TACTCGAATG
*
69087890 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
69087931 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
69087971 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
69088011 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69088035 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:69096038 original size:40 final size:39
Alignment explanation
Indices: 69095954--69096138 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
69095944 TCGAATGATG
* * * *
69095954 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69095994 TCCGGACTAAGATCCGAAGGCATTTTTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69096034 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
69096073 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
* *
69096114 -CCGGGCTATGTCCCGAAAGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
69096139 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69096091 original size:79 final size:81
Alignment explanation
Indices: 69095954--69096136 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
69095944 TCGAATGATG
* *
69095954 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
69096018 TTTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
69096033 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCA
69096095 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
69096113 ACCGGGCTATGTCCCGAAAGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69096137 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.65
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:69096160 original size:79 final size:78
Alignment explanation
Indices: 69095991--69096171 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 78
69095981 CTAAGTGACC
* * * *
69095991 ATATCCGGACTAAGATCCGAAGGCATTTTTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCAT
**
69096056 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* *
69096070 AAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAAG
1 ATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAAG
*
69096133 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
69096150 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
69096172 TACGTGATTC
Statistics
Matches: 85, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
78 4 0.05
79 54 0.64
80 27 0.32
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAAGCATT
GGAACGAGTTACT
Found at i:69099385 original size:16 final size:16
Alignment explanation
Indices: 69099366--69099397 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69099356 AATTGTTTTA
69099366 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
69099382 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
69099398 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:69099672 original size:50 final size:50
Alignment explanation
Indices: 69099597--69099991 Score: 391
Period size: 50 Copynumber: 7.9 Consensus size: 50
69099587 ACTGAAGCTC
* *
69099597 TCTGGTATACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * *
69099647 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * ** *
69099697 TCTGATTCACATAGTAGTCTGCACTTAGTACTACACACGTTATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
** * * *
69099749 -C-GAGTATGCATAGTAGCCTACACTTAGAACTACACATGCGACCTATCAA
1 TCTG-GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** * * *
69099798 TCTGGTACACATAGTAGCTTGCACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * ** *
69099848 TCTGATACACATAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
69099900 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * *
69099949 TCTGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGAC
69099992 TCACAATGAA
Statistics
Matches: 272, Mismatches: 65, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
49 6 0.02
50 195 0.72
51 69 0.25
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:69099880 original size:151 final size:151
Alignment explanation
Indices: 69099601--69099992 Score: 658
Period size: 151 Copynumber: 2.6 Consensus size: 151
69099591 AAGCTCTCTG
*
69099601 GTATACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * * *
69099666 TGCACTTAGTACTACACATGTGACTTAACCATCTGATTCACATAGTAGTCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
*
69099731 ACACGTTATCGAAGTTAACGA
131 ACACGTGATCGAAGTTAACGA
* * * *
69099752 GTATGCATAGTAGCCTACACTTAGAACTACACATGCGACCTATCAATCTGGTACACATAGTAGCT
1 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
*
69099817 TGCACTTAGTACTACACACATGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
*
69099882 ACACGTGATCGAAGTTAACGG
131 ACACGTGATCGAAGTTAACGA
*
69099903 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
*
69099968 TGAACTTAGTACTACACACGTGACT
66 TGCACTTAGTACTACACACGTGACT
69099993 CACAATGAAT
Statistics
Matches: 222, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
151 222 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (151 bp):
GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
ACACGTGATCGAAGTTAACGA
Found at i:69099906 original size:101 final size:100
Alignment explanation
Indices: 69099600--69099991 Score: 335
Period size: 101 Copynumber: 3.9 Consensus size: 100
69099590 GAAGCTCTCT
* ** * * *
69099600 GGTATACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACATAGTAGC
* * * * *
69099665 CTGCACTTAGTACTACACATGTGACTTAA-CCATCT
66 CTACACTTAGTACTACACACGTGAC-CAATCAATCG
* * * *** * * * **
69099700 GATTCACATAGTAGTCTGCACTTAGTACTACACACGTTATCGAAGTTAA-C-GAGTATGCATAGT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAA--CAATCTGA-TACACATAGT
* * * * *
69099763 AGCCTACACTTAGAACTACACATGCGACCTATCAATCT
63 AGCCTACACTTAGTACTACACACGTGACCAATCAATCG
* * * *
69099801 GGTACACATAGTAGCTTGCACTTAGTACTACACACATGACTTAACCATCTGATACACATAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACATAGTAGC
* *
69099866 CTACACTTAGTACTACACACGTGATCGAAGTTAA-CG
66 CTACACTTAGTACTACACACGTGA-CCAA-TCAATCG
* ** * * *
69099902 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACATAGTAGC
69099967 CTGA-ACTTAGTACTACACACGTGAC
66 CT-ACACTTAGTACTACACACGTGAC
69099992 TCACAATGAA
Statistics
Matches: 232, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
99 1 0.00
100 70 0.30
101 155 0.67
102 6 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACATAGTAGC
CTACACTTAGTACTACACACGTGACCAATCAATCG
Found at i:69100368 original size:19 final size:20
Alignment explanation
Indices: 69100340--69100386 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
69100330 AAGAACATGT
69100340 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
69100361 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
69100380 TATATAT
1 TATATAT
69100387 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:69101755 original size:48 final size:48
Alignment explanation
Indices: 69101703--69101838 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
69101693 TCGATATGTG
* * *
69101703 ATCCCATGTAAGTCCATGTCTGGGACATGGCATTGGCATCGACCTACA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACATACA
* * * ***
69101751 ATCCCATGTAAGACCATGTCTGGGACATAGCATTGACATCAATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACATACA
* *
69101799 ATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
69101839 CTACCATGTG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAACATACA
Found at i:69101761 original size:91 final size:95
Alignment explanation
Indices: 69101617--69101838 Score: 265
Period size: 91 Copynumber: 2.4 Consensus size: 95
69101607 ATGCGGTCCT
* * * * ****
69101617 ATGTAAGACCATGTCTGGGACATGCCTTTGGCATCGATATATAATTTTGTGTAAGACCATAG-CT
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATACAATCCCATGTAAGACCAT-GTCT
* *
69101681 GGG-C-TATCA-G-CATCGATATGTGATCCC
65 GGGACATAGCATGACATCAATATGTGATCCC
* *
69101708 ATGTAAGTCCATGTCTGGGACATGGCATTGGCATCGACCTACAATCCCATGTAAGACCATGTCTG
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATACAATCCCATGTAAGACCATGTCTG
69101773 GGACATAGCATTGACATCAATATGTGATCCC
66 GGACATAGCA-TGACATCAATATGTGATCCC
* *
69101804 ATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATC
69101839 CTACCATGTG
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
90 1 0.01
91 55 0.50
92 1 0.01
93 4 0.04
95 1 0.01
96 48 0.44
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (95 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATACAATCCCATGTAAGACCATGTCTG
GGACATAGCATGACATCAATATGTGATCCC
Found at i:69105705 original size:48 final size:48
Alignment explanation
Indices: 69105628--69105728 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 48
69105618 TGGACTATTA
* * *
69105628 GCATCGATATATGATCCCATGAAAGACCATGTCTGGGACATGGTAGTG
1 GCATCGATATATGATCCCATGAAAGACCATATCCGGGACATGGCAGTG
* * *
69105676 GCATCGATATGTGATCCCATGTAAA-ACCATATCCGGGATATGGCATTG
1 GCATCGATATATGATCCCATG-AAAGACCATATCCGGGACATGGCAGTG
69105724 GCATC
1 GCATC
69105729 CTACCATGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 43 0.93
49 3 0.07
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (48 bp):
GCATCGATATATGATCCCATGAAAGACCATATCCGGGACATGGCAGTG
Found at i:69105990 original size:27 final size:28
Alignment explanation
Indices: 69105952--69106011 Score: 113
Period size: 27 Copynumber: 2.2 Consensus size: 28
69105942 TGTAAATGGC
69105952 ATGACTTAAAATGTACCTATGATACTTG
1 ATGACTTAAAATGTACCTATGATACTTG
69105980 ATGAC-TAAAATGTACCTATGATACTTG
1 ATGACTTAAAATGTACCTATGATACTTG
69106007 ATGAC
1 ATGAC
69106012 ATTGTGTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 27 0.84
28 5 0.16
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (28 bp):
ATGACTTAAAATGTACCTATGATACTTG
Found at i:69110560 original size:46 final size:46
Alignment explanation
Indices: 69110510--69110682 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
69110500 TGGTTGAGCA
*
69110510 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
69110556 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
69110603 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
69110649 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69110683 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:69110666 original size:93 final size:93
Alignment explanation
Indices: 69110507--69110677 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69110497 GGATGGTTGA
* * *
69110507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
69110572 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
69110600 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
69110665 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69110678 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69110916 original size:19 final size:20
Alignment explanation
Indices: 69110879--69110916 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69110869 ATAAGGTGGT
69110879 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
69110899 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
69110917 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:69118068 original size:46 final size:46
Alignment explanation
Indices: 69118018--69118190 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
69118008 TGGTTGAGCA
*
69118018 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
69118064 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
69118111 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
69118157 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
69118191 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:69118174 original size:93 final size:93
Alignment explanation
Indices: 69118015--69118185 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
69118005 GGATGGTTGA
* *
69118015 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
69118080 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
69118108 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
69118173 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69118186 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69118449 original size:19 final size:20
Alignment explanation
Indices: 69118412--69118449 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69118402 ATAAGGTGGT
69118412 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
69118432 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
69118450 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:69120972 original size:33 final size:31
Alignment explanation
Indices: 69120890--69120975 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
69120880 ATTGCATGAG
* **
69120890 CACTAAGTGTGCAAGTTTTGATTAGTATACTT
1 CACTAAGTGTGCAAG-TTTGATTAGTAGACGA
*
69120922 C-CTAAGTGTGCAGAGTTTGATTAGTAGAGGA
1 CACTAAGTGTGCA-AGTTTGATTAGTAGACGA
69120953 CACTAAGTTGTGCGAAGTTTGAT
1 CACTAAG-TGTGC-AAGTTTGAT
69120976 ATATAACTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
31 24 0.52
32 8 0.17
33 13 0.28
34 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.35
Consensus pattern (31 bp):
CACTAAGTGTGCAAGTTTGATTAGTAGACGA
Found at i:69123310 original size:40 final size:40
Alignment explanation
Indices: 69123216--69123360 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69123206 TACTCGAATG
*
69123216 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
69123257 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
69123297 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
69123337 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69123361 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:69131121 original size:40 final size:40
Alignment explanation
Indices: 69131027--69131171 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
69131017 TACTCGAATG
*
69131027 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
69131068 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
69131108 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
69131148 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
69131172 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:69133461 original size:28 final size:28
Alignment explanation
Indices: 69133429--69133549 Score: 197
Period size: 28 Copynumber: 4.3 Consensus size: 28
69133419 ATTTACTAGA
69133429 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
69133457 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
69133485 ATACCCTTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
** * *
69133513 ATACCCCTATGCGTGCAAAATAACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
69133541 ATACCCCTA
1 ATACCCCTA
69133550 GGGTTAATTT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:69139301 original size:12 final size:13
Alignment explanation
Indices: 69139273--69139305 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69139263 TTATTTCTTT
69139273 TTCTCCATCTACC
1 TTCTCCATCTACC
*
69139286 TTCTCC-TCTTCC
1 TTCTCCATCTACC
69139298 TTCTCCAT
1 TTCTCCAT
69139306 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:69140394 original size:28 final size:28
Alignment explanation
Indices: 69140362--69140482 Score: 197
Period size: 28 Copynumber: 4.3 Consensus size: 28
69140352 ATTTACTAGA
69140362 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
69140390 ATACCCCTATGTATGTAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
69140418 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
** * *
69140446 ATACCCCTATGCGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATTACCATT
69140474 ATACCCCTA
1 ATACCCCTA
69140483 GGGTTAATTT
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:69140629 original size:28 final size:27
Alignment explanation
Indices: 69140588--69140677 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
69140578 AGGAAGCGTC
69140588 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
69140616 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
69140643 CTGGTGGCACTGCCATAAAATATCTGTAT
1 CTGGTGGCACTGCCA-CAAATATCTGT-T
69140672 CTGGTG
1 CTGGTG
69140678 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:69140696 original size:55 final size:56
Alignment explanation
Indices: 69140588--69140702 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
69140578 AGGAAGCGTC
* * *
69140588 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
69140643 CTGGTGGC-ACTGCCATAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
69140699 CTGG
1 CTGG
69140703 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:69142495 original size:12 final size:13
Alignment explanation
Indices: 69142478--69142507 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
69142468 GACACACGGT
69142478 CATGTTACA-GGC
1 CATGTTACATGGC
69142490 CATGTTACATGGC
1 CATGTTACATGGC
69142503 CATGT
1 CATGT
69142508 GTCCCCAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (13 bp):
CATGTTACATGGC
Found at i:69142708 original size:65 final size:65
Alignment explanation
Indices: 69142639--69142766 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
69142629 CCGTGTGACC
* * *
69142639 CAAGTCAGTAACCTCCCTAAATTTCACACAGCCTGGCACATGGGCGTGTCCT-TGGCCGTGTGGT
1 CAAGTCAGTAACCTCCCTAAATTTCACACAACCTGGCACACGGGCATGT-CTATGGCCGTGTGGT
69142703 A
65 A
69142704 CAAGTCAGTAACCTCCCTAAATTTCACACAACCTGGCACACGGGCATGTCTAGTGGCCGTGTG
1 CAAGTCAGTAACCTCCCTAAATTTCACACAACCTGGCACACGGGCATGTCTA-TGGCCGTGTG
69142767 AGGCACATGG
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
64 2 0.03
65 46 0.79
66 10 0.17
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (65 bp):
CAAGTCAGTAACCTCCCTAAATTTCACACAACCTGGCACACGGGCATGTCTATGGCCGTGTGGTA
Found at i:69150214 original size:68 final size:64
Alignment explanation
Indices: 69150000--69150249 Score: 211
Period size: 68 Copynumber: 3.8 Consensus size: 64
69149990 GAACACTTCG
* * * *
69150000 GCTCTCTTGGACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCA-ATTTA-TCTTGTA
1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGTGACCTAGCTACATATATTCTTGTA
* * * * * * **
69150063 GCTCTCTTGTCCACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATA-TCCC
1 GCTCTCTTGTACACATGGTG---TACA-CTAGTACCACCCATGTGACCTAGCTACATATATTCTT
69150127 GTA
62 GTA
*
69150130 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACAC-TAGTACCACCCATGTGACCTAGCTACAT-AT-AT-TCT
69150194 TGTA
61 TGTA
* * * **
69150198 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTAC
1 GCTCTCTTGTACACATGGTGTACACT-AGTACCACCCATGTGACCTAGCTAC
69150250 CATCTATATT
Statistics
Matches: 148, Mismatches: 26, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
63 19 0.13
64 26 0.18
65 2 0.01
66 24 0.16
67 29 0.20
68 47 0.32
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACTAGTACCACCCATGTGACCTAGCTACATATATTCTTGTA
Found at i:69151944 original size:11 final size:11
Alignment explanation
Indices: 69151928--69151953 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
69151918 TTGTTTGCTC
69151928 ATTTTGAATTT
1 ATTTTGAATTT
69151939 ATTTTGAATTT
1 ATTTTGAATTT
69151950 ATTT
1 ATTT
69151954 CATTTTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTTGAATTT
Found at i:69156296 original size:11 final size:11
Alignment explanation
Indices: 69156280--69156305 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
69156270 TTGTTTGCTC
69156280 ATTTTGAATTT
1 ATTTTGAATTT
69156291 ATTTTGAATTT
1 ATTTTGAATTT
69156302 ATTT
1 ATTT
69156306 CATTTTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTTGAATTT
Found at i:69158146 original size:11 final size:11
Alignment explanation
Indices: 69158130--69158154 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
69158120 AACTAAAATG
69158130 AAATAAATTCA
1 AAATAAATTCA
69158141 AAATAAATTCA
1 AAATAAATTCA
69158152 AAA
1 AAA
69158155 CGAGCAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (11 bp):
AAATAAATTCA
Found at i:69158194 original size:10 final size:11
Alignment explanation
Indices: 69158170--69158198 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
69158160 AAACAAGCTT
69158170 ATTGAGCTGGA
1 ATTGAGCTGGA
69158181 ATTGAGCT-GA
1 ATTGAGCTGGA
69158191 ATTGAGCT
1 ATTGAGCT
69158199 CAACGAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.28, C:0.10, G:0.31, T:0.31
Consensus pattern (11 bp):
ATTGAGCTGGA
Found at i:69159800 original size:43 final size:43
Alignment explanation
Indices: 69159752--69159898 Score: 172
Period size: 43 Copynumber: 3.4 Consensus size: 43
69159742 ATCGAGATGA
*
69159752 GATTACATGTAAGACCATGTCTGGGACATTTGCATTG-TAT-T
1 GATTACATGTAAGACCATGTCTGGGACATTAGCATTGATATAT
* *
69159793 GGGATTACATGTAAGACCATGTCTGGGACATTAGCATCGTTATAT
1 --GATTACATGTAAGACCATGTCTGGGACATTAGCATTGATATAT
*** ** *
69159838 GATTTTGTGTAAGACCATGTCTGGGATGTTGGCATTGATATAT
1 GATTACATGTAAGACCATGTCTGGGACATTAGCATTGATATAT
*
69159881 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
69159899 ATCTAGGTTA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
43 84 0.95
44 3 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTAGCATTGATATAT
Found at i:69163958 original size:93 final size:93
Alignment explanation
Indices: 69163844--69164015 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
69163834 GCCCATAAGA
*
69163844 GAACTTGGACTCAACTCAATGAGCTCAGGA-GTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAATGAGCTCA-GACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
69163908 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
*
69163937 GAACTCGGACTCAACTCAATGAGTTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGCTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
69164002 TGAGTTCGGATGCC
66 CGAGCTCGGATGCC
69164016 CAAATATCCA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGCTCAGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:69164008 original size:46 final size:47
Alignment explanation
Indices: 69163836--69164005 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 47
69163826 TGTAACCCGC
* **
69163836 CCATAAGAGAACTTGGACTCAACTCAATGAGCTCAGGA-GTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCAGGACGTTCGCAT
* *
69163882 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCAGGA---C--GTTCGCAT
* * * *
69163932 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCA-GACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCAGGACGTTCGCAT
69163975 CCATAAGTGAACTCAGACTCAACTCAATGAG
1 CCATAAGTGAACTCAGACTCAACTCAATGAG
69164006 TTCGGATGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 22
0.73 0.10 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 5 0.05
46 52 0.53
47 25 0.25
48 2 0.02
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCAGACTCAACTCAATGAGCTCAGGACGTTCGCAT
Found at i:69171204 original size:40 final size:41
Alignment explanation
Indices: 69171149--69171340 Score: 257
Period size: 40 Copynumber: 4.8 Consensus size: 41
69171139 ATTTGAATGA
* *
69171149 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* *
69171189 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
*
69171229 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
69171270 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
69171310 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
69171341 TGTGGTAATA
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 135 0.96
41 5 0.04
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.26
Consensus pattern (41 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
Found at i:69179541 original size:40 final size:41
Alignment explanation
Indices: 69179486--69179677 Score: 248
Period size: 40 Copynumber: 4.8 Consensus size: 41
69179476 ATTTGAATGA
* *
69179486 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* *
69179526 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
*
69179566 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * * *
69179607 -ATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
69179647 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
69179678 TGTGGTAATA
Statistics
Matches: 138, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
40 133 0.96
41 5 0.04
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (41 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
Found at i:69187011 original size:20 final size:20
Alignment explanation
Indices: 69186986--69187031 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
69186976 ATTGGGCATT
69186986 GCCCATATT-AACACAGTTGG
1 GCCCATATTGAACACAGTT-G
*
69187006 GCCCAT-TTGAATACAGTTG
1 GCCCATATTGAACACAGTTG
69187025 GCCCATA
1 GCCCATA
69187032 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (20 bp):
GCCCATATTGAACACAGTTG
Found at i:69196981 original size:18 final size:18
Alignment explanation
Indices: 69196958--69196996 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
69196948 GAACAGGGAT
69196958 CTAGAAATCGCTCTGGCC
1 CTAGAAATCGCTCTGGCC
69196976 CTAGAAATCGCTCTGGCC
1 CTAGAAATCGCTCTGGCC
69196994 CTA
1 CTA
69196997 TTCACCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (18 bp):
CTAGAAATCGCTCTGGCC
Found at i:69197698 original size:48 final size:49
Alignment explanation
Indices: 69197602--69197700 Score: 182
Period size: 48 Copynumber: 2.0 Consensus size: 49
69197592 CTTACCTGAT
69197602 CTTTCACTATTCATAAATATAATCTACCTTCCATTTTGCTGATAATTCA
1 CTTTCACTATTCATAAATATAATCTACCTTCCATTTTGCTGATAATTCA
*
69197651 CTTTCACTATTCATAAATATAATC-ACCTTCCCTTTTGCTGATAATTCA
1 CTTTCACTATTCATAAATATAATCTACCTTCCATTTTGCTGATAATTCA
69197699 CT
1 CT
69197701 GTAATTTAAC
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 25 0.51
49 24 0.49
ACGTcount: A:0.29, C:0.24, G:0.04, T:0.42
Consensus pattern (49 bp):
CTTTCACTATTCATAAATATAATCTACCTTCCATTTTGCTGATAATTCA
Found at i:69197907 original size:46 final size:49
Alignment explanation
Indices: 69197801--69197922 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
69197791 TGTCTTCGAC
* * * * *
69197801 ATGGACTTACACGAATTATTCTTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCA-ATATATATCTAAT
* *
69197851 ATGGGCTTACATGGATCATTCCTGTCTCCAAAGCC-ATATAT-T-TGAT
1 ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCAATATATATCTAAT
* *
69197897 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGATCATTCCTGTC
69197923 CTGTCCTATC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 26 0.42
47 1 0.02
48 6 0.10
50 29 0.47
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (49 bp):
ATGGACTTACATGGATCATTCCTGTCTCCAAAGCCAATATATATCTAAT
Found at i:69435497 original size:27 final size:28
Alignment explanation
Indices: 69435467--69435530 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
69435457 ATTTACTAGA
*
69435467 ATACCCCTATGTATG-AAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
69435494 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
69435522 ATACCCCTA
1 ATACCCCTA
69435531 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 15 0.45
28 18 0.55
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.33
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:69435665 original size:26 final size:28
Alignment explanation
Indices: 69435636--69435724 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
69435626 AGGAAGCGTC
*
69435636 CTGGTGGCTATG-C-CAAATTATCTATT
1 CTGGTGGCCATGCCACAAATTATCTATT
* *
69435662 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCCATGCCACAAATTATCTATT
* *
69435690 CTGGTGG-CACTGCCACAAAATATCTGTAT
1 CTGGTGGCCA-TGCCACAAATTATCTAT-T
69435719 CTGGTG
1 CTGGTG
69435725 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 10 0.19
27 2 0.04
28 35 0.65
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCCATGCCACAAATTATCTATT
Found at i:69435691 original size:28 final size:28
Alignment explanation
Indices: 69435649--69435724 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
69435639 GTGGCTATGC
* *
69435649 CAAATTATCTATTCTGGTGGCCCTGCCA
1 CAAATTATCTGTTCTGGTGGCACTGCCA
69435677 CAAATTATCTGTTCTGGTGGCACTGCCA
1 CAAATTATCTGTTCTGGTGGCACTGCCA
*
69435705 CAAAATATCTGTATCTGGTG
1 CAAATTATCTGT-TCTGGTG
69435725 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 37 0.84
29 7 0.16
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (28 bp):
CAAATTATCTGTTCTGGTGGCACTGCCA
Found at i:69436210 original size:19 final size:19
Alignment explanation
Indices: 69436186--69436224 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
69436176 TTTTAATTAT
* *
69436186 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
69436205 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
69436224 T
1 T
69436225 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:69436831 original size:11 final size:10
Alignment explanation
Indices: 69436803--69436836 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
69436793 AGCTTGTAAG
69436803 TATTCTGAAT
1 TATTCTGAAT
*
69436813 TTTTCTGAAT
1 TATTCTGAAT
69436823 ATATTCTGAAT
1 -TATTCTGAAT
69436834 TAT
1 TAT
69436837 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:69443354 original size:28 final size:28
Alignment explanation
Indices: 69443322--69443382 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
69443312 ATTTACTAGA
*
69443322 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
69443350 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
69443378 ATACC
1 ATACC
69443383 TCTGGGGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:69443542 original size:28 final size:28
Alignment explanation
Indices: 69443492--69443582 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
69443482 AGGAAGCGTC
*
69443492 CTGGTGGCTA-TGCCACAAGTTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* * *
69443520 CTGGTGGCCCTTCCATAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
69443548 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
69443577 CTGGTG
1 CTGGTG
69443583 ACTGTGTCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 46 0.87
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:69447054 original size:6 final size:6
Alignment explanation
Indices: 69447026--69447122 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
69447016 ACGAAACATT
* * *
69447026 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
69447075 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATGAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
69447123 GTAATAGAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
5 4 0.06
6 58 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:69447078 original size:31 final size:31
Alignment explanation
Indices: 69447035--69447145 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 31
69447025 TATCAGAACT
* *
69447035 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
69447066 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
69447097 AGAATCAAAATGAGAATCAGTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
69447128 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
69447146 GTGAATACAG
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 60 0.86
32 10 0.14
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:69447323 original size:27 final size:26
Alignment explanation
Indices: 69447281--69447374 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 26
69447271 GCTCAGTTAT
* *
69447281 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
69447308 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* * *
69447334 CAAATATTTGTGGCATAGCCAGCAGGAA
1 CAGATA-TTGTGGCAGAGCCACCA-GAA
*
69447362 CAGATAATGTGGC
1 CAGATATTGTGGC
69447375 TAATTCACTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.10
27 44 0.76
28 8 0.14
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:69448088 original size:27 final size:27
Alignment explanation
Indices: 69448032--69448199 Score: 189
Period size: 27 Copynumber: 6.3 Consensus size: 27
69448022 GGGGCAAAAT
* * * *
69448032 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
69448058 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69448085 GGTAATTCTACCCTAAAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69448111 TAGTAATTCTACCTTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
69448139 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
69448166 GAG-ATTTCTACCCTATAAGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
*
69448193 GATAATT
1 GGTAATT
69448200 TTGTAAATTG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
26 18 0.15
27 100 0.82
28 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:69448199 original size:81 final size:81
Alignment explanation
Indices: 69448050--69448199 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
69448040 TACCCCACAA
* *
69448050 GGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTCTAGT
1 GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTCGAGT
69448115 AATTCTACCTTACAGG
66 AATTCTACCTTACAGG
* *
69448131 GGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAG-ATTTCTACCCTATAA-GGGTATTTCG
1 GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCG-GTAATTCTACCCTA-AAGGGGTA-TTCG
69448194 A-TAATT
63 AGTAATT
69448200 TTGTAAATTG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
81 55 0.89
82 7 0.11
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (81 bp):
GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAAAGGGGTATTCGAGT
AATTCTACCTTACAGG
Found at i:69448267 original size:27 final size:26
Alignment explanation
Indices: 69448232--69448628 Score: 217
Period size: 27 Copynumber: 14.7 Consensus size: 26
69448222 TAATTCTGTA
* *
69448232 AATCAAGGGTACTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
***
69448258 AAGTCGAGGGTATTTCAATAATTTTAC
1 AA-TCGAGGGTATTTTGGTAATTTTAC
** * *
69448285 TGGTCGAGGGTATTTTAGTAATTTCAC
1 -AATCGAGGGTATTTTGGTAATTTTAC
*
69448312 AAAT-TAGGGATATTTTGGTAATTTTAC
1 -AATCGAGGG-TATTTTGGTAATTTTAC
* *
69448339 TAA-CTAGGGGTATTTTGATAATTTTAC
1 -AATCGA-GGGTATTTTGGTAATTTTAC
* *
69448366 AAACCAGGGATATTTTGGTAATTTTAC
1 AATCGAGGG-TATTTTGGTAATTTTAC
* * *
69448393 AAACCAGGGGTATTTTGGTAATTTTATT
1 AATCGA-GGGTATTTTGGTAATTTTA-C
* * * **
69448421 AA-CAAAAGGTATTTTAGTAATTTTGT
1 AATC-GAGGGTATTTTGGTAATTTTAC
* * *
69448447 AAACCAGGGGTATTTTGGTAATTTTAT
1 AATCGA-GGGTATTTTGGTAATTTTAC
* * *
69448474 AAACAAAGGGTATTTTAGTAATTTTAC
1 AATC-GAGGGTATTTTGGTAATTTTAC
* *
69448501 AAACCAGGGGTATTTTGGTAATTTTGTA-
1 AATCGA-GGGTATTTTGGTAA-TTT-TAC
* * *
69448529 AACCAATGGTATTTTGGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
* * * *
69448555 AAACCAGGGGTATTTTGGTGATTTTATA
1 AATCGA-GGGTATTTTGGTAATTTTA-C
* * *
69448583 AACCAAGGGTATTTTAGTAATTTTAC
1 AATCGAGGGTATTTTGGTAATTTTAC
* * *
69448609 AAACCAGGGGTTTTTTGGTA
1 AATCGA-GGGTATTTTGGTA
69448629 GTTTGGTAAA
Statistics
Matches: 300, Mismatches: 51, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
25 2 0.01
26 27 0.09
27 248 0.83
28 21 0.07
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
AATCGAGGGTATTTTGGTAATTTTAC
Found at i:69448329 original size:81 final size:81
Alignment explanation
Indices: 69448244--69448617 Score: 281
Period size: 81 Copynumber: 4.6 Consensus size: 81
69448234 TCAAGGGTAC
* * *** *
69448244 TTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACTGGTCGAGGG-TATTTTAGTAAT
1 TTTGGTAATTTTACTAACTAG-GGGTATTTCAATAATTTTAC-AAACCAGGGATATTTTAGTAAT
**
69448307 TTCACAAATTAGGGATAT
64 TTCACAAACCAGGGATAT
** *
69448325 TTTGGTAATTTTACTAACTAGGGGTATTTTGATAATTTTACAAACCAGGGATATTTTGGTAATTT
1 TTTGGTAATTTTACTAACTAGGGGTATTTCAATAATTTTACAAACCAGGGATATTTTAGTAATTT
* *
69448390 TACAAACCAGGGGTAT
66 CACAAACCAGGGATAT
* * ** * * ** * *
69448406 TTTGGTAATTTTATTAACAAAAGGTATTTTAGTAATTTTGTAAACCAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACTAACTAGGGGTATTTCAATAATTTTACAAACCAGGGATATTTTAGTAATTT
* * *
69448471 TATAAACAAAGGG-TAT
66 CACAAAC-CAGGGATAT
* * * *** ** * *
69448487 TTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAATGG-TATTTTGGTAATT
1 TTTGGTAATTTTACTAACTAGGGGTATTTCAATAATTTTACAAACC-AGGGATATTTTAGTAATT
* *
69448551 TTACAAACCAGGGGTAT
65 TCACAAACCAGGGATAT
* * * * *
69448568 TTTGGTGATTTTA-TAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGG
1 TTTGGTAATTTTACT-AACTAGGGGTATTTCAATAATTTTACAAACCAGGG
69448618 GTTTTTTGGT
Statistics
Matches: 245, Mismatches: 42, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
80 12 0.05
81 222 0.91
82 11 0.04
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
TTTGGTAATTTTACTAACTAGGGGTATTTCAATAATTTTACAAACCAGGGATATTTTAGTAATTT
CACAAACCAGGGATAT
Found at i:69448639 original size:27 final size:27
Alignment explanation
Indices: 69448292--69448628 Score: 388
Period size: 27 Copynumber: 12.5 Consensus size: 27
69448282 TACTGGTCGA
* * * **
69448292 GGGTATTTTAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448319 GGATATTTTGGTAATTTTACT-AACTAG
1 GGGTATTTTGGTAATTTTA-TAAACCAG
* *
69448346 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448373 GGATATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
69448400 GGGTATTTTGGTAATTTTATTAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
69448427 AGGTATTTTAGTAATTTTGTAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448454 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448481 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448508 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448535 TGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448562 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
69448589 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
69448616 GGGTTTTTTGGTA
1 GGGTATTTTGGTA
69448629 GTTTGGTAAA
Statistics
Matches: 259, Mismatches: 49, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
27 259 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:69448639 original size:54 final size:54
Alignment explanation
Indices: 69448317--69448628 Score: 446
Period size: 54 Copynumber: 5.8 Consensus size: 54
69448307 TTCACAAATT
* * * * *
69448317 AGGGATATTTTGGTAATTTTACTAACTAGGGGTATTTTGATAATTTTACAAACC-
1 AGGG-TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
69448371 AGGGATATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTAACAA
1 AGGG-TATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* ** *
69448426 AAGGTATTTTAGTAATTTTGTAAACCAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
69448480 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
69448534 ATGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
*
69448588 AGGGTATTTTAGTAATTTTACAAACCAGGGGTTTTTTGGTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTA
69448629 GTTTGGTAAA
Statistics
Matches: 233, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
54 230 0.99
55 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:69451598 original size:26 final size:26
Alignment explanation
Indices: 69451569--69451618 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
69451559 TGAGTAGGCC
69451569 CATTTCACAGCTAATGTGAGCATACT
1 CATTTCACAGCTAATGTGAGCATACT
* * **
69451595 CATTTTAGAGCTCGTGTGAGCATA
1 CATTTCACAGCTAATGTGAGCATA
69451619 AATCTTCAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
CATTTCACAGCTAATGTGAGCATACT
Found at i:69454051 original size:8 final size:8
Alignment explanation
Indices: 69454008--69454054 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
69453998 CACTAGGAAC
69454008 TATGTGAT
1 TATGTGAT
*
69454016 TATGAGAT
1 TATGTGAT
*
69454024 TATGAGAT
1 TATGTGAT
69454032 TATGTG-T
1 TATGTGAT
*
69454039 ATATGTGAC
1 -TATGTGAT
69454048 TATGTGA
1 TATGTGA
69454055 ATCCGGGTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 1 0.03
8 33 0.97
ACGTcount: A:0.30, C:0.02, G:0.26, T:0.43
Consensus pattern (8 bp):
TATGTGAT
Found at i:69458026 original size:42 final size:42
Alignment explanation
Indices: 69457980--69458067 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
69457970 GTCTACGCCA
* *
69457980 TGTGTGACACATGGTCAGCCCCATGGGCATGTCGTTCAGCTG
1 TGTGTGACACACGGTCAGCCCCATAGGCATGTCGTTCAGCTG
* * **
69458022 TGTGTGACACACGGTCAGCCCTATAGGCGTGTCGTTTGGCTG
1 TGTGTGACACACGGTCAGCCCCATAGGCATGTCGTTCAGCTG
69458064 TGTG
1 TGTG
69458068 CCCCCTGCAC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.15, C:0.24, G:0.33, T:0.28
Consensus pattern (42 bp):
TGTGTGACACACGGTCAGCCCCATAGGCATGTCGTTCAGCTG
Found at i:69459663 original size:40 final size:40
Alignment explanation
Indices: 69459586--69459763 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
69459576 AAACCAAGTA
* * * *
69459586 CCTTCGGGATTTAG-CCGGACATAGCT-ACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
69459625 CCTTCGAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69459665 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69459705 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69459745 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69459764 TTATCATCCG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 115 0.90
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69466217 original size:11 final size:12
Alignment explanation
Indices: 69466185--69466224 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
69466175 AGGATCATCA
69466185 AAGTGTAAGCTC
1 AAGTGTAAGCTC
69466197 AAGTGTAAGCTC
1 AAGTGTAAGCTC
69466209 AAG-GTAAGCTC
1 AAGTGTAAGCTC
69466220 AAGTG
1 AAGTG
69466225 CACATTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.23
Consensus pattern (12 bp):
AAGTGTAAGCTC
Found at i:69469568 original size:93 final size:93
Alignment explanation
Indices: 69469409--69469673 Score: 388
Period size: 93 Copynumber: 2.8 Consensus size: 93
69469399 CTGATATTTG
* * **
69469409 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTAAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
69469474 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * *
69469502 GGCATTCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATAGATGCGAACGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
69469567 TTGAGTCTGAGTTCATGAGATGTAATTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * *
69469595 GGCATCCGAGCTCATTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
69469659 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
69469674 GCTTATGGGC
Statistics
Matches: 152, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
92 1 0.01
93 151 0.99
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:69469679 original size:46 final size:47
Alignment explanation
Indices: 69469413--69469681 Score: 223
Period size: 46 Copynumber: 5.8 Consensus size: 47
69469403 TATTTGGGCA
* *
69469413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTAAACG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * *
69469459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* * * * *
69469505 ATTCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATAGATGCGAACG-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
69469552 TCCAAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--GATGTAATTAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* * ** *
69469598 ATCCGAGCTCATTGAGTTGAGTCTAAGTTCACTTATGGATGCGAACGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
69469646 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69469682 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 12 0.07
45 8 0.04
46 88 0.49
47 54 0.30
48 9 0.05
50 10 0.06
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:69495854 original size:39 final size:39
Alignment explanation
Indices: 69495807--69495959 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
69495797 CCAGACATAT
* * *
69495807 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* *
69495846 TTCTAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
* * *
69495885 TTCCAACACATAGCCTGCGAACCCTAACTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
69495924 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
69495960 AACATCACTG
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 102 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:69495861 original size:78 final size:78
Alignment explanation
Indices: 69495779--69495951 Score: 204
Period size: 78 Copynumber: 2.2 Consensus size: 78
69495769 ACCAGCTCGA
* * * * * * * *
69495779 AGCCTGCGGGACTTTAA-CCCAGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTA
1 AGCCTGC-GGACCTTAAGCCCAGACATAATTCCAACACATAGCCTGCGAACCCTAACTCCGGATA
*
69495843 TAATTCTAGCACAT
65 TAATTCCAGCACAT
* * *
69495857 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAACACATAGCCTGCGAACCCTAACTCCGGATAT
1 AGCCTGCGGACCTTAAGCCCAGACATAATTCCAACACATAGCCTGCGAACCCTAACTCCGGATAT
69495922 AATTCCAGCACAT
66 AATTCCAGCACAT
* *
69495935 AGCCTGCAGACCCTAAG
1 AGCCTGCGGACCTTAAG
69495952 TCCGGATAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
77 8 0.10
78 72 0.90
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (78 bp):
AGCCTGCGGACCTTAAGCCCAGACATAATTCCAACACATAGCCTGCGAACCCTAACTCCGGATAT
AATTCCAGCACAT
Found at i:69506423 original size:40 final size:40
Alignment explanation
Indices: 69506361--69506538 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
69506351 AAGCCAAGTA
* * *
69506361 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
69506400 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
69506440 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * * * *
69506480 CCTTCGGGACTTAGCCCGGGA-CTAGTCACTAGCGCAAATA
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACGAATG
69506520 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69506539 TTATCATCCA
Statistics
Matches: 125, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.11
40 108 0.86
41 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:69514717 original size:40 final size:40
Alignment explanation
Indices: 69514546--69514763 Score: 235
Period size: 40 Copynumber: 5.5 Consensus size: 40
69514536 AAGCCAAGTA
* * * *
69514546 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
69514585 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69514625 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69514665 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * * **
69514705 CCTTCGGGACTTAGACCGGGA-CTACTCACTAGCGTAAATG
1 CCTTCGGGACTTAG-CCCGGATATAGTAACTCGCACAAATG
*
69514745 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69514764 TTATCATCCA
Statistics
Matches: 155, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 15 0.10
40 135 0.87
41 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69537594 original size:21 final size:21
Alignment explanation
Indices: 69537570--69537609 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69537560 GGACTAAACT
*
69537570 GAAAACTTTGAAAAATTTTGG
1 GAAAACTTAGAAAAATTTTGG
*
69537591 GAAAACTTAGAAAATTTTT
1 GAAAACTTAGAAAAATTTT
69537610 CCCTAAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (21 bp):
GAAAACTTAGAAAAATTTTGG
Found at i:69539583 original size:40 final size:40
Alignment explanation
Indices: 69539431--69539576 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
69539421 TTGAATGATG
* * * *
69539431 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
69539471 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69539511 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69539552 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69539577 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.