Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 214 of 290
Found at i:69539583 original size:80 final size:80
Alignment explanation
Indices: 69539431--69539609 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
69539421 TTGAATGATG
* * *
69539431 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
69539496 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
69539511 TCCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
69539574 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
69539591 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69539610 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.72
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:69546967 original size:27 final size:28
Alignment explanation
Indices: 69546930--69547042 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 28
69546920 AGCATGGCTG
* *
69546930 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
69546956 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* * *
69546983 CCAGAAACAGATATTTATGGCTGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* * *
69547011 CCAGAT-CATATATTTGTGGCAAAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
69547038 CCAGA
1 CCAGA
69547043 ACGCTTTCTC
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.07
27 52 0.70
28 17 0.23
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.21
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:69549186 original size:21 final size:21
Alignment explanation
Indices: 69549143--69549186 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
69549133 CTAAACCGAG
***
69549143 AACTTTGAAAACTTTTGGGAA
1 AACTTTGAAAACTTTTCCAAA
*
69549164 AACTTTGAAAATTTTTCCAAA
1 AACTTTGAAAACTTTTCCAAA
69549185 AA
1 AA
69549187 ATAGGGTCAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (21 bp):
AACTTTGAAAACTTTTCCAAA
Found at i:69552492 original size:114 final size:114
Alignment explanation
Indices: 69552368--69552593 Score: 452
Period size: 114 Copynumber: 2.0 Consensus size: 114
69552358 TGGGTAGTAA
69552368 AAAAAAACTTTTGGCCTTTAGGCAATTTAGTCCTTTTTTTTGTAATTAAGCTCACAAACGCTAAA
1 AAAAAAACTTTTGGCCTTTAGGCAATTTAGTCCTTTTTTTTGTAATTAAGCTCACAAACGCTAAA
69552433 ATTAAGTTACCAAAATTTTATGCACTTGTATAATCATGCTATAACACAC
66 ATTAAGTTACCAAAATTTTATGCACTTGTATAATCATGCTATAACACAC
69552482 AAAAAAACTTTTGGCCTTTAGGCAATTTAGTCCTTTTTTTTGTAATTAAGCTCACAAACGCTAAA
1 AAAAAAACTTTTGGCCTTTAGGCAATTTAGTCCTTTTTTTTGTAATTAAGCTCACAAACGCTAAA
69552547 ATTAAGTTACCAAAATTTTATGCACTTGTATAATCATGCTATAACAC
66 ATTAAGTTACCAAAATTTTATGCACTTGTATAATCATGCTATAACAC
69552594 GCTAAAATTA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (114 bp):
AAAAAAACTTTTGGCCTTTAGGCAATTTAGTCCTTTTTTTTGTAATTAAGCTCACAAACGCTAAA
ATTAAGTTACCAAAATTTTATGCACTTGTATAATCATGCTATAACACAC
Found at i:69556451 original size:13 final size:13
Alignment explanation
Indices: 69556428--69556461 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
69556418 AATGATGTCG
*
69556428 CACGGCCAAGTCA
1 CACGCCCAAGTCA
*
69556441 CATGCCCAAGTCA
1 CACGCCCAAGTCA
69556454 CACGCCCA
1 CACGCCCA
69556462 TGTGCTAGGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.44, G:0.18, T:0.09
Consensus pattern (13 bp):
CACGCCCAAGTCA
Found at i:69557894 original size:45 final size:45
Alignment explanation
Indices: 69557806--69557901 Score: 165
Period size: 45 Copynumber: 2.1 Consensus size: 45
69557796 TTATACAAAA
* * *
69557806 TGACTAAAGATCTATGACAAGCCACTCGTTTGGCCCAATACAATG
1 TGACTAAAGAGCTAAGACAAGCCACTCGTTTGGCCCAAAACAATG
69557851 TGACTAAAGAGCTAAGACAAGCCACTCGTTTGGCCCAAAACAATG
1 TGACTAAAGAGCTAAGACAAGCCACTCGTTTGGCCCAAAACAATG
69557896 TGACTA
1 TGACTA
69557902 TTATAAATGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (45 bp):
TGACTAAAGAGCTAAGACAAGCCACTCGTTTGGCCCAAAACAATG
Found at i:69558576 original size:49 final size:49
Alignment explanation
Indices: 69558477--69558601 Score: 142
Period size: 49 Copynumber: 2.6 Consensus size: 49
69558467 CATTAAAATT
* * * *
69558477 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTTATATATTGAGGTC
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGTC
* * * * * *
69558526 GATGTCGTGTCCCAGATAAGTCTTACACTGGCTCTCATCTATCGATGTC
1 GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGTC
* *
69558575 GATGCCATATCCAAGATAGGTCTTACA
1 GATGCCATGTCCCAGATAGGTCTTACA
69558602 ATGAAACACA
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
49 61 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (49 bp):
GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAGGTC
Found at i:69558765 original size:48 final size:48
Alignment explanation
Indices: 69558624--69558833 Score: 200
Period size: 46 Copynumber: 4.5 Consensus size: 48
69558614 AAGCTGACAC
* * * *
69558624 CATGTCCCAGACAGGT-TCTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCT-TACACTGGATTGTATATCTCAAGGCCGATG
* * * * * * * *
69558672 CACGTCCTAGATATGTCTTACACT-AACTCTA-GTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGATTGTATATCTCAAGGCCGATG
69558718 CATGTCCCAGACATGTCTTACACTGGATTGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGATTGTATATCTCAAGGCCGATG
* * * *
69558766 CATGTCCCAAACATGTCTTACACTGGCTCT-CATAATGT---GGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGAT-TGTAT-ATCTCAAGGCCGATG
69558812 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
69558834 TTAGCACACA
Statistics
Matches: 133, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
46 62 0.47
47 7 0.05
48 59 0.44
49 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGATTGTATATCTCAAGGCCGATG
Found at i:69558809 original size:94 final size:92
Alignment explanation
Indices: 69558624--69558833 Score: 246
Period size: 94 Copynumber: 2.2 Consensus size: 92
69558614 AAGCTGACAC
* * * * * *
69558624 CATGTCCCAGACAGGT-TCTACACTAGCTTGTATATCTCGAGGCCGATGCACGTCCTAGATATGT
1 CATGTCCCAGACATGTCT-TACACTAGATTGTATATCTCAAGGCCGATGCACGTCCCAAACATGT
69558688 CTTACACTAACTCTAGTCTCAATGCCGATG
65 CTTACACTAACTCTA--CTCAATGCCGATG
* *
69558718 CATGTCCCAGACATGTCTTACACTGGATTGTATATCTCAAGGCCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGATTGTATATCTCAAGGCCGATGCACGTCCCAAACATGTC
**
69558783 TTACACTGGCTCT-CAT-AATGTGGCCGATG
66 TTACACTAACTCTAC-TCAA--T-GCCGATG
69558812 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
69558834 TTAGCACACA
Statistics
Matches: 101, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
91 3 0.03
92 1 0.01
93 1 0.01
94 95 0.94
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGATTGTATATCTCAAGGCCGATGCACGTCCCAAACATGTC
TTACACTAACTCTACTCAATGCCGATG
Found at i:69563904 original size:45 final size:45
Alignment explanation
Indices: 69563853--69563979 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 45
69563843 TGGTTGAGCA
*
69563853 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
* *
69563898 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACG
* * * *
69563944 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
69563980 GGCGGGTTAC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 35 0.48
46 38 0.52
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
Found at i:69569447 original size:45 final size:44
Alignment explanation
Indices: 69569287--69569457 Score: 204
Period size: 45 Copynumber: 3.8 Consensus size: 44
69569277 GGTTGAGCAT
*
69569287 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAACG
* * * *
69569332 TCCGAACTCGTTGAGTTGAGTCGAGTTC-GTGA--GATGTAACTAGG
1 -CCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAA--ACG
69569376 CATCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACG
1 C--CGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACG
*
69569422 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGG
69569458 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 17
0.81 0.07 0.13
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 22 0.20
45 48 0.44
46 25 0.23
48 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (44 bp):
CCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACG
Found at i:69572701 original size:27 final size:27
Alignment explanation
Indices: 69572671--69572848 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69572661 ATATTGAGTC
* * * *
69572671 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69572698 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69572725 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69572753 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69572780 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69572807 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69572834 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69572849 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69572810 original size:82 final size:81
Alignment explanation
Indices: 69572692--69572847 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69572682 TGCTATATAA
* *
69572692 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69572757 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69572774 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69572838 CACTTAGTGC
65 CACTTAGTGC
69572848 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69580721 original size:27 final size:27
Alignment explanation
Indices: 69580691--69580868 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69580681 ATATTGAGTC
* * * *
69580691 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69580718 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69580745 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69580773 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69580800 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69580827 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69580854 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69580869 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69580830 original size:82 final size:81
Alignment explanation
Indices: 69580712--69580867 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69580702 TGCTATATAA
* *
69580712 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69580777 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69580794 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69580858 CACTTAGTGC
65 CACTTAGTGC
69580868 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69599784 original size:43 final size:43
Alignment explanation
Indices: 69599723--69599863 Score: 210
Period size: 43 Copynumber: 3.3 Consensus size: 43
69599713 CTATTTGGGC
* * *
69599723 CTTCGAGCTTAGCAGGCTATAATGCCGGTGAGTTAATATTGGG
1 CTTCGAGCCTAGTAGGCTATAATGCCGGTGAGTTAATATCGGG
* **
69599766 CTTCAAGCCTAGTAGGCTATAATGTTGGTGAGTTAATATCGGG
1 CTTCGAGCCTAGTAGGCTATAATGCCGGTGAGTTAATATCGGG
* *
69599809 CTTCGAGCCTAGTAGGCTATAATGCCGGTGAGTTACTATCAGG
1 CTTCGAGCCTAGTAGGCTATAATGCCGGTGAGTTAATATCGGG
69599852 CTTCGAGCCTAG
1 CTTCGAGCCTAG
69599864 CAGACGTAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
CTTCGAGCCTAGTAGGCTATAATGCCGGTGAGTTAATATCGGG
Found at i:69604208 original size:26 final size:26
Alignment explanation
Indices: 69604163--69604243 Score: 92
Period size: 26 Copynumber: 3.1 Consensus size: 26
69604153 AACACACCAA
* * *
69604163 TATCGCAACAAAGCTACCAGTATCAG
1 TATCGCAGCAAAACTGCCAGTATCAG
*
69604189 TAGT-GCAGCAAAACTGCCAGTAACAG
1 TA-TCGCAGCAAAACTGCCAGTATCAG
* *
69604215 TATCGCAGCAAAGCTGCTAGTATCAG
1 TATCGCAGCAAAACTGCCAGTATCAG
69604241 TAT
1 TAT
69604244 ATAGGTGGCC
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.02
26 44 0.96
27 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAAACTGCCAGTATCAG
Found at i:69606454 original size:26 final size:26
Alignment explanation
Indices: 69606374--69606454 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
69606364 AACACACCAA
*
69606374 TATCGCAGCAAAGCTGCTAGTACTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
* * *
69606400 TAGCGCAGCAAAGTTGCCAGTAGTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
*
69606426 TATCGCAGCAAAGCTGCCAGTATTAG
1 TATCGCAGCAAAGCTGCCAGTACTAG
69606452 TAT
1 TAT
69606455 ATATGTGGCC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTACTAG
Found at i:69609032 original size:47 final size:47
Alignment explanation
Indices: 69608978--69609480 Score: 837
Period size: 47 Copynumber: 10.6 Consensus size: 47
69608968 TATTTGAATA
69608978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69609025 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69609072 AATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
*
69609123 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
69609170 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69609217 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69609264 AATGTGAAAGTGTAGATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGT--ATATATGTGATAAGGCCTAATGGCCGATGTGATG
69609313 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69609360 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
69609407 AATGTGAAAGTGTATATATGTGACAGGGCCAAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69609454 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69609481 TCCTGAAGGG
Statistics
Matches: 431, Mismatches: 17, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.00
47 330 0.77
48 2 0.00
49 58 0.13
51 39 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69609394 original size:190 final size:189
Alignment explanation
Indices: 69608978--69609480 Score: 857
Period size: 190 Copynumber: 2.6 Consensus size: 189
69608968 TATTTGAATA
69608978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
69609043 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGTGATAAGGCCTA
66 TGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTA-ATATA--TGTGATAAGGCCTA
69609108 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATG
128 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATG
69609170 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
69609235 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAGATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTA-ATATATGTGATAAGGCCTAAT
*
69609300 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATG
130 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
69609360 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
69609425 TGTGACAGGGCCAAATGGCCAACGTGATGGATGTGAAAGTGT-ATAAATGTGATAAG
66 TGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTAATATATGTGATAAG
69609481 TCCTGAAGGG
Statistics
Matches: 297, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
188 13 0.04
190 172 0.58
191 2 0.01
192 110 0.37
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (189 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTAATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATG
Found at i:69609649 original size:37 final size:37
Alignment explanation
Indices: 69609599--69609741 Score: 232
Period size: 37 Copynumber: 3.9 Consensus size: 37
69609589 CCGAGCTCTA
*
69609599 AAGACCCGATGACTGCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
69609636 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
69609673 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * * *
69609710 AAGACCCGATAACTTCATGTGGAGATTTTGTC
1 AAGACCCGATGACTACGTGTGGAGATTATGTC
69609742 TGAGCTAAAG
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:69625686 original size:43 final size:43
Alignment explanation
Indices: 69625620--69626030 Score: 503
Period size: 43 Copynumber: 9.7 Consensus size: 43
69625610 GTATATGAGA
* * * *
69625620 CATCAATATGTGATTACGTGTAAGACCACGTGTAGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
*
69625663 CATCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
*
69625706 CATCGATATGTGATTACGTGTAAGACCATGTCT-GG--G--GG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
** * *
69625744 CATCGATATGTGATTACGCATAAGACCATGTCTGGGATGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * * * *
69625787 CATCTATATTTAATTACGTGTAAGACCATGTTTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* *
69625830 GATTGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
*
69625873 CATCGATATGTGATTACGTGTAAGACGACGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* *
69625916 CATCGATATGTGATTATGTGTAAGACCAGGTCTGGGACGTTGG
1 CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
* * * * *
69625959 CATTGATATGTGTTTAAGAGTAAGACC-CTTTCTGGGACAG-TGG
1 CATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGAC-GTTGG
* * *
69626002 CATCGATATGAGATTACATGTAATACCAC
1 CATCGATATGTGATTACGTGTAAGACCAC
69626031 ATCAAGGAAG
Statistics
Matches: 321, Mismatches: 39, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
38 33 0.10
39 2 0.01
40 1 0.00
41 1 0.00
42 2 0.01
43 280 0.87
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
CATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGG
Found at i:69634312 original size:25 final size:25
Alignment explanation
Indices: 69634244--69634323 Score: 106
Period size: 26 Copynumber: 3.1 Consensus size: 25
69634234 AACACACCAA
* *
69634244 TATCGCAACAAAGCTACTAGTATCAG
1 TATCGC-ACAAAGCTGCCAGTATCAG
* *
69634270 TAACGCAGCAAAGCTGCCAGTAGCAG
1 TATCGCA-CAAAGCTGCCAGTATCAG
69634296 TATCGCACAAAGCTGCCAGTATCAG
1 TATCGCACAAAGCTGCCAGTATCAG
69634321 TAT
1 TAT
69634324 ATATGTTGGG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 21 0.45
26 26 0.55
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (25 bp):
TATCGCACAAAGCTGCCAGTATCAG
Found at i:69641753 original size:28 final size:28
Alignment explanation
Indices: 69641713--69641815 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
69641703 TGGCCCCTTT
*
69641713 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
69641741 GGGCCCAATCTCATTCATATGACCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
69641769 AGGCCCAATCACTTTCATATGGCTCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
69641797 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
69641816 CTCATGCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:69645928 original size:40 final size:40
Alignment explanation
Indices: 69645756--69645921 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
69645746 AACCCAAGTA
* * * * *
69645756 CCTTCGGAATTTAG-CCGGATCTAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
69645795 CCTTCGGGACTTAGCCCGGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
69645835 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69645875 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
69645915 CCTTCGG
1 CCTTCGG
69645922 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 12 0.10
40 104 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:69653680 original size:40 final size:40
Alignment explanation
Indices: 69653601--69653806 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
69653591 AACCCAAGTA
* * * *
69653601 CCTTCGGAATTTAG-CCGGATATAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
69653640 CCTTCGGGACTTAGCCCGGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
69653680 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69653720 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
69653760 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
69653800 CCTTCGG
1 CCTTCGG
69653807 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.08
40 145 0.92
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:69658135 original size:43 final size:42
Alignment explanation
Indices: 69658071--69658200 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 42
69658061 ACATTAGGTT
* * *
69658071 ATCGAGATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
1 ATCGATATATGATAACATGTAAGACCATGTCTGGGACA-TGGC
* ** * * *
69658114 ATCGTTATATGATTTCGTGTAAGACCCTGTCTAGGACAGTGGC
1 ATCGATATATGATAACATGTAAGACCATGTCTGGGACA-TGGC
* * * *
69658157 ATCGATATGTTATAACATGTAAGACCATATCTGGGATATGGC
1 ATCGATATATGATAACATGTAAGACCATGTCTGGGACATGGC
69658199 AT
1 AT
69658201 TGTACTAGCT
Statistics
Matches: 69, Mismatches: 18, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
42 6 0.09
43 63 0.91
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
ATCGATATATGATAACATGTAAGACCATGTCTGGGACATGGC
Found at i:69667281 original size:17 final size:17
Alignment explanation
Indices: 69667259--69667291 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
69667249 GGATCAGAGA
69667259 TGGGGTAAAATTTTATT
1 TGGGGTAAAATTTTATT
69667276 TGGGGTAAAATTTTAT
1 TGGGGTAAAATTTTAT
69667292 GTAATAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (17 bp):
TGGGGTAAAATTTTATT
Found at i:69678272 original size:48 final size:48
Alignment explanation
Indices: 69678217--69678768 Score: 969
Period size: 48 Copynumber: 11.5 Consensus size: 48
69678207 TTGCTTATAA
69678217 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
69678265 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
69678313 GCTAGTGTGAAATATGTATGAAATATATATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69678361 GCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
69678409 GCGAGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
69678457 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69678505 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAAG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* * * *
69678553 GCTAATGTGAAATATGTATGTGGTATGTATATGTGGTAAAGCCGAACG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69678601 GCTACTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69678649 GCTAGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
69678697 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* * *
69678745 GCTGGTGTTAAATATGTAGGAGAT
1 GCTAGTGTGAAATATGTATGAGAT
69678769 GTGTGTATAT
Statistics
Matches: 479, Mismatches: 25, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 479 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31
Consensus pattern (48 bp):
GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
Found at i:69678959 original size:37 final size:37
Alignment explanation
Indices: 69678909--69679011 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
69678899 GGAAATATAT
69678909 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
69678946 TCCGGCTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69678983 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
69679012 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69680342 original size:40 final size:40
Alignment explanation
Indices: 69680289--69680566 Score: 423
Period size: 40 Copynumber: 7.0 Consensus size: 40
69680279 TTGAGAGTTA
* *
69680289 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
69680329 TATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
69680369 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69680409 TATGTCAGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69680449 TATGTCCGGGCTAATTCCCGAAGAGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
69680489 TATAT-CGGGCTAAGTCCCTAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
69680528 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
69680567 ATGTGCATTC
Statistics
Matches: 218, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 36 0.17
40 182 0.83
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:69683951 original size:48 final size:48
Alignment explanation
Indices: 69683892--69684251 Score: 666
Period size: 48 Copynumber: 7.5 Consensus size: 48
69683882 TTGCTTATAA
*
69683892 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAACG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
69683940 GCTGGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
69683988 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69684036 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69684084 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
69684132 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
69684180 GCTAGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATG
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
69684228 GCTAGTGTGAAATATGTATGAGAT
1 GCTAGTGTGAAATATGTATGAGAT
69684252 TTTCACATAT
Statistics
Matches: 303, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 303 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
Found at i:69684157 original size:144 final size:144
Alignment explanation
Indices: 69683892--69684365 Score: 732
Period size: 144 Copynumber: 3.2 Consensus size: 144
69683882 TTGCTTATAA
* * *
69683892 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAACGGCTGGTGTGAAATATGT
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
*
69683957 ATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
69684022 GGTAAAGCCGAATG
131 GGTAAAGCCGAATG
*
69684036 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
69684101 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
69684166 GGTAAAGCCGAATG
131 GGTAAAGCCGAATG
* *
69684180 GCTAGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-A--T
*
69684245 ATGAGATTTTCACATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
62 AT--G---------TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAT
*
69684310 GAGATATGTATATGTGGTAAAGCCAAATG
116 GAGATATGTATATGTGGTAAAGCCGAATG
69684339 GCTAATGTGAAATATGTATGAGATATG
1 GCTAATGTGAAATATGTATGAGATATG
69684366 AAATATGTAT
Statistics
Matches: 303, Mismatches: 12, Indels: 15
0.92 0.04 0.05
Matches are distributed among these distances:
144 193 0.64
145 2 0.01
146 1 0.00
148 3 0.01
150 1 0.00
159 103 0.34
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (144 bp):
GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGT
GGTAAAGCCGAATG
Found at i:69684325 original size:48 final size:48
Alignment explanation
Indices: 69684259--69684365 Score: 205
Period size: 48 Copynumber: 2.2 Consensus size: 48
69684249 GATTTTCACA
*
69684259 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATG
69684307 TATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATG
69684355 TATGAGATATG
1 TATGAGATATG
69684366 AAATATGTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATG
Found at i:69684369 original size:18 final size:18
Alignment explanation
Indices: 69684346--69684383 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
69684336 ATGGCTAATG
69684346 TGAAATATGTATGAGATA
1 TGAAATATGTATGAGATA
69684364 TGAAATATGTATGAGATA
1 TGAAATATGTATGAGATA
69684382 TG
1 TG
69684384 TATATGTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.34
Consensus pattern (18 bp):
TGAAATATGTATGAGATA
Found at i:69684380 original size:66 final size:66
Alignment explanation
Indices: 69684298--69684431 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
69684288 ATGGCTAATG
69684298 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAT
69684363 A
66 A
*
69684364 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAT
69684429 A
66 A
69684430 TG
1 TG
69684432 TATATGTGGT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.32
Consensus pattern (66 bp):
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGAT
A
Found at i:69684417 original size:48 final size:48
Alignment explanation
Indices: 69684364--69684524 Score: 286
Period size: 48 Copynumber: 3.4 Consensus size: 48
69684354 GTATGAGATA
69684364 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
69684412 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
69684460 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTACTG
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
69684508 TGAAATATGTAGGAGAT
1 TGAAATATGTATGAGAT
69684525 GTGTGTATAT
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 109 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
Found at i:69684425 original size:114 final size:114
Alignment explanation
Indices: 69684139--69684479 Score: 589
Period size: 114 Copynumber: 3.0 Consensus size: 114
69684129 ATGGCTAGTG
* *
69684139 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGAT
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
69684204 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT-
66 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA
*** *
69684252 TTTCACA--TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* *
69684315 ATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATA
66 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA
69684364 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
69684429 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA
66 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA
69684478 TG
1 TG
69684480 TATATGTGGT
Statistics
Matches: 211, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
111 100 0.47
112 3 0.01
113 3 0.01
114 105 0.50
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (114 bp):
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA
Found at i:69684715 original size:37 final size:37
Alignment explanation
Indices: 69684665--69684767 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
69684655 GGAAATATAT
69684665 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
69684702 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
69684739 TCCGGGTAAGACTCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
69684768 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:69686027 original size:45 final size:45
Alignment explanation
Indices: 69685973--69686084 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 45
69685963 CACAATTGGT
69685973 CATTCGGCCTTATCACATATTCACGAACACATAT-ATCACATTAAC
1 CATTCGGCCTTATCACATATTCACGAACACAT-TCATCACATTAAC
*** **
69686018 CA-TCTGGCCTTATCACATGTATTCACTTCCACATTCATCACATTGGC
1 CATTC-GGCCTTATCACA--TATTCACGAACACATTCATCACATTAAC
69686065 CATTCGGCCTTATCACATAT
1 CATTCGGCCTTATCACATAT
69686085 CATGGCCACA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
44 2 0.04
45 17 0.30
46 1 0.02
47 35 0.61
48 2 0.04
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (45 bp):
CATTCGGCCTTATCACATATTCACGAACACATTCATCACATTAAC
Found at i:69689851 original size:40 final size:40
Alignment explanation
Indices: 69689796--69690073 Score: 484
Period size: 40 Copynumber: 7.0 Consensus size: 40
69689786 GAATACACAT
* * *
69689796 CACCAGCATGAATGCTCTTCGAGACCTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
*
69689836 CACCAGCACGAATGCTCTTCGAGACTTAGCCTGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
69689876 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
*
69689916 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
*
69689956 CACCAGCAGGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
* *
69689996 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
69690036 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
1 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
69690074 CTAACTCTCA
Statistics
Matches: 225, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 225 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
Found at i:69692642 original size:47 final size:47
Alignment explanation
Indices: 69692531--69692653 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 47
69692521 TGCAAACTTT
* *
69692531 TCACAATTGGTCATTCGGCCTTATCACA--TATTCACGTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATGTATGCACGTACACATATA
** * * *
69692577 TCACATTAACCATCCGGCCTTATCACATGTATGCACTTCCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATGTATGCACGTACACATAT-A
69692624 TCACATTGGCCATTCGGCCTTATCACATGT
1 TCACATTGGCCATTCGGCCTTATCACATGT
69692654 CATGGCCACA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 19 0.30
46 5 0.08
47 40 0.62
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATGTATGCACGTACACATATA
Found at i:69704182 original size:17 final size:15
Alignment explanation
Indices: 69704152--69704196 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
69704142 AGTTTGAGAC
69704152 AAAGAAATCCAAGAT
1 AAAGAAATCCAAGAT
69704167 AAAGAAACTCCCAAGAT
1 AAAGAAA-T-CCAAGAT
**
69704184 TCAGAAATCCAAG
1 AAAGAAATCCAAG
69704197 TTACAATACC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 12 0.46
16 2 0.08
17 12 0.46
ACGTcount: A:0.53, C:0.20, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAGAAATCCAAGAT
Found at i:69708746 original size:28 final size:28
Alignment explanation
Indices: 69708686--69708740 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
69708676 ACTGCACTAT
* * *
69708686 ACTGATATTGAATTGGGCTTAGGCCCAC
1 ACTGTTATTGAATAGGGCTAAGGCCCAC
*
69708714 ACTGTTATTGTATAGGGCTAAGGCCCA
1 ACTGTTATTGAATAGGGCTAAGGCCCA
69708741 GGCTGTACTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (28 bp):
ACTGTTATTGAATAGGGCTAAGGCCCAC
Found at i:69710221 original size:22 final size:22
Alignment explanation
Indices: 69710196--69710240 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
69710186 TTTAAGCATA
69710196 TAAATTATAACCCATAATAATT
1 TAAATTATAACCCATAATAATT
69710218 TAAATTATAACCCATAATAATT
1 TAAATTATAACCCATAATAATT
69710240 T
1 T
69710241 TTGTACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAATTATAACCCATAATAATT
Found at i:69715217 original size:40 final size:40
Alignment explanation
Indices: 69715140--69715357 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
69715130 AAACCAAGTA
* * * *
69715140 CCTTCGGGATTTAG-CCGGACATAGCT-ACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
69715179 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69715219 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69715259 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
69715299 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69715339 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
69715358 TTATCATCCG
Statistics
Matches: 171, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.08
40 157 0.92
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69720017 original size:79 final size:80
Alignment explanation
Indices: 69719856--69720080 Score: 296
Period size: 79 Copynumber: 2.8 Consensus size: 80
69719846 TTGAATGATG
* * * * *
69719856 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
69719919 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
69719936 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
69719999 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * * * * *
69720015 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAAGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
69720080 G
66 G
69720081 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
79 73 0.56
80 47 0.36
81 9 0.07
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:69720069 original size:119 final size:120
Alignment explanation
Indices: 69719856--69720080 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
69719846 TTGAATGATG
* *
69719856 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
* *
69719921 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGATACTAAT
* * * **
69719976 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
69720038 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAAGCATTTG
64 TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAAGCATTTG
69720081 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 1 0.01
119 71 0.77
120 20 0.22
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAAGCATTTGTGCGAGATACTAAT
Found at i:69720087 original size:40 final size:40
Alignment explanation
Indices: 69719856--69720080 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
69719846 TTGAATGATG
* * * *
69719856 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
69719896 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
69719936 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
69719976 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69720015 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69720056 -CCGGGCTATGTCCCGAAAGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69720081 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 37 0.23
40 115 0.71
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69726813 original size:37 final size:37
Alignment explanation
Indices: 69726752--69726830 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
69726742 TTATTACGAA
* * * *
69726752 GTCTTACCCAGACATAATCTCCACATGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
69726789 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
69726826 GTCTT
1 GTCTT
69726831 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:69727170 original size:49 final size:49
Alignment explanation
Indices: 69726951--69727476 Score: 761
Period size: 49 Copynumber: 11.0 Consensus size: 49
69726941 CTTCGGGACT
* * * * *
69726951 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * * * *
69726998 TGTCACATATATAT--ACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
69727045 TGTCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
69727092 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
69727139 TATGACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
69727188 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
69727237 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
69727286 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
69727335 TATCTC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
69727382 TATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
69727431 TATCAC--ATATATACACTTTCACGTTCATCACATCGACCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
69727477 TTACTATCAT
Statistics
Matches: 451, Mismatches: 20, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
45 6 0.01
47 207 0.46
48 1 0.00
49 237 0.53
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:69727479 original size:96 final size:95
Alignment explanation
Indices: 69726949--69727476 Score: 763
Period size: 96 Copynumber: 5.5 Consensus size: 95
69726939 CCCTTCGGGA
* * * * * * * *
69726949 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACTATATATACA
* * * * *
69727013 CTTTCACATCCATCACGTTGGCCACTCGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* * * *
69727043 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACTATATATACA
69727107 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* * *
69727137 CCTATGACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCCTATCACATATATAT
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-TATATAT
69727202 ACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
69727235 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-TATATAT
69727300 ACACTTTCACATTCATCACATCGGCCATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69727333 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-TATATATAC
69727398 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
69727429 CTTATCACATATATACACTTTCACGTTCATCACATCGACCATTAGGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
69727477 TTACTATCAT
Statistics
Matches: 397, Mismatches: 31, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
94 81 0.20
96 179 0.45
98 137 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACTATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69730111 original size:40 final size:40
Alignment explanation
Indices: 69730054--69730211 Score: 226
Period size: 40 Copynumber: 3.9 Consensus size: 40
69730044 CGAATACACG
* * *
69730054 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * *
69730094 ACACCAGCACGAATGCTCTTCGGAACATAGCCCTGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCC-GGATACA
*
69730135 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
69730175 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
69730212 TTAGTAACTC
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 72 0.68
41 34 0.32
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:69730157 original size:81 final size:80
Alignment explanation
Indices: 69730054--69730211 Score: 226
Period size: 81 Copynumber: 2.0 Consensus size: 80
69730044 CGAATACACG
* *
69730054 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAA
69730119 CATAGCCCTGGATACA
66 CATAGCCC-GGATACA
* * * * * *
69730135 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAA
*
69730200 CTTAGCCCGGAT
66 CATAGCCCGGAT
69730212 TTAGTAACTC
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 4 0.06
81 64 0.94
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAA
CATAGCCCGGATACA
Found at i:69730231 original size:81 final size:81
Alignment explanation
Indices: 69730067--69730249 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 81
69730057 CCAGCATGAT
* *
69730067 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACATAGCCCTGGAT
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACATAGCCCTGGAT
* **
69730132 ACATCACTAGCATGAA
66 ACATAACTAGCACCAA
* * * * *
69730148 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCC-GGAT
1 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACATAGCCCTGGAT
** *
69730212 TTAGTAACTCGCACCAA
66 ACA-TAACTAGCACCAA
69730229 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
69730250 ATTAGTATCT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 11 0.12
80 12 0.14
81 65 0.74
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (81 bp):
TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAATGCTCTTCGGAACATAGCCCTGGAT
ACATAACTAGCACCAA
Found at i:69730236 original size:40 final size:40
Alignment explanation
Indices: 69730071--69730330 Score: 185
Period size: 40 Copynumber: 6.5 Consensus size: 40
69730061 CATGATTGCT
* * *
69730071 CTTCGGGACCTAGCCCGGATATA--ACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTA-ACTAGCACCAATGC
* * * * **
69730110 TCTTCGGAACATAGCCCTGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCC-GGATATAGTAACTAGCACCAATGC
* * **
69730151 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCACCAATGC
* *
69730191 TCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCACCAATGC
* * *
69730232 CTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACCAATGC
* * * *
69730271 CATTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGC
1 C-TTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCACCAATGC
69730312 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
69730331 AATCATTCGA
Statistics
Matches: 185, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
39 31 0.17
40 82 0.44
41 67 0.36
42 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACCAATGC
Found at i:69730740 original size:43 final size:45
Alignment explanation
Indices: 69730639--69730740 Score: 190
Period size: 45 Copynumber: 2.3 Consensus size: 45
69730629 AAATCAACCA
69730639 CGCACACTTAGTGCCAATCTCTACAACCGTGAACACTTAGTTGCC
1 CGCACACTTAGTGCCAATCTCTACAACCGTGAACACTTAGTTGCC
69730684 CGCACACTTAGTGCCAATCTC-ACAACCGTGAACACTTA-TTGCC
1 CGCACACTTAGTGCCAATCTCTACAACCGTGAACACTTAGTTGCC
69730727 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69730741 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
43 19 0.33
44 17 0.30
45 21 0.37
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (45 bp):
CGCACACTTAGTGCCAATCTCTACAACCGTGAACACTTAGTTGCC
Found at i:69732534 original size:36 final size:37
Alignment explanation
Indices: 69732462--69732539 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
69732452 TTATTACGAA
* * *
69732462 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
69732499 GTCTTACCCAGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
69732535 GTCTT
1 GTCTT
69732540 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 20 0.54
37 17 0.46
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:69732831 original size:49 final size:49
Alignment explanation
Indices: 69732660--69733088 Score: 603
Period size: 49 Copynumber: 9.0 Consensus size: 49
69732650 CTTCGGGACT
* * * * * *
69732660 TATCACAT-T-TAAACACTTTCACATCCATCACGTTGGCCACT-CGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
69732706 TGTCACATATATAT--ACTTTCACATTCATCACATCGGCAATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
69732753 TATCAC--ATATATACACATTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
69732800 TATCACATATATATACACTTTCACATTCATCACATCGGGCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
69732849 TATCACATATATATACACTTTCACATTCATCACATCGGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATC-GGCCATTAGGCCC
* *
69732899 TATCACATATATATTACACTTTCACATTCATCACATCGGCCCTTAGGCCT
1 TATCACATATATA-TACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
69732949 TATCTC--ATATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
69732995 TATCACATATATATACACTTTCACATTCATCA-ATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
69733043 TATCACATATATA-ACACTTTCACGTTCATCACATCGGCCATTAGGC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69733089 TTACTATCAT
Statistics
Matches: 348, Mismatches: 22, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
45 6 0.02
46 66 0.19
47 64 0.18
48 57 0.16
49 91 0.26
50 41 0.12
51 23 0.07
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:69732836 original size:96 final size:96
Alignment explanation
Indices: 69732658--69733088 Score: 638
Period size: 96 Copynumber: 4.5 Consensus size: 96
69732648 CCCTTCGGGA
* * * * * * * *
69732658 CTTATCACATTTAAACACTTTCACATCCATCACGTTGGCCACT-CGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
69732720 ACTTTCACATTCATCACATCGGCAATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
69732751 CTTATCACATATATACACATTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
69732816 ACTTTCACATTCATCACATCGGGCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
69732847 CCTATCACATATATATACACTTTCACATTCATCACATCGGGCCATTAGGCCCTATCACATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATC-GGCCATTAGGCCCTATCACATATATA
*
69732912 TTACACTTTCACATTCATCACATCGGCCCTTAGGC
63 -TACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69732947 CTTATCTCATATATA-ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
69733011 ACTTTCACATTCATCA-ATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
69733041 CTTATCACATATATAACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGC
69733089 TTACTATCAT
Statistics
Matches: 308, Mismatches: 21, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
93 36 0.12
94 43 0.14
95 20 0.06
96 91 0.30
97 20 0.06
98 34 0.11
99 26 0.08
100 38 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69732981 original size:146 final size:146
Alignment explanation
Indices: 69732672--69733088 Score: 609
Period size: 146 Copynumber: 2.9 Consensus size: 146
69732662 TCACATTTAA
* * * * * *
69732672 ACACTTTCACATCCATCACGTTGGCCACT-CGCCCTGTCACATATATAT--ACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
* *
69732734 CACATCGGCAATTAGGCCTTATCAC--ATATATACACATTCACATTCATCACATCGGCCATTAGG
66 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
69732797 CCCTATCACATATATAT
131 CCCTATCACA-ATATAT
*
69732814 ACACTTTCACATTCATCACATCGGGCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
* *
69732879 CACATCGGGCCATTAGGCCCTATCACATATATATTACACTTTCACATTCATCACATCGGCCCTTA
66 CACATC-GGCCATTAGGCCTTATCACATATATA-TACACTTTCACATTCATCACATCGGCCATTA
* *
69732944 GGCCTTATCTC-ATATAT
129 GGCCCTATCACAATATAT
*
69732961 A-ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
1 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
*
69733025 CA-ATCGGCCATTAGGCCTTATCACATATATA-ACACTTTCACGTTCATCACATCGGCCATTAGG
66 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
69733088 C
131 C
69733089 TTACTATCAT
Statistics
Matches: 250, Mismatches: 18, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
142 55 0.22
143 17 0.07
144 25 0.10
145 23 0.09
146 80 0.32
147 7 0.03
148 5 0.02
149 38 0.15
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (146 bp):
ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCCTATCACAATATAT
Found at i:69737461 original size:48 final size:48
Alignment explanation
Indices: 69737401--69737506 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
69737391 CGGCCACAAT
* *
69737401 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
69737449 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
* *
69737497 ACATATATAT
1 ATATACATAT
69737507 ATTTATCTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
Found at i:69740418 original size:39 final size:39
Alignment explanation
Indices: 69740392--69740549 Score: 244
Period size: 39 Copynumber: 4.1 Consensus size: 39
69740382 GTCCAGCACG
* *
69740392 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
* * *
69740431 TAGCCTACGGACATGAAGTCCAGATATAATTCTCGTATA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
* *
69740470 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
*
69740509 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCGTA
1 TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
69740548 TA
1 TA
69740550 TATATTCACA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCAGATATAATTCTCGCATA
Found at i:69749146 original size:85 final size:85
Alignment explanation
Indices: 69749003--69749181 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
69748993 GGCCGGCCAT
*
69749003 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACGTGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
69749068 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
69749088 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
69749153 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
69749173 GGGCATGGG
1 GAGCATGGG
69749182 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:69750522 original size:49 final size:47
Alignment explanation
Indices: 69750447--69750855 Score: 608
Period size: 47 Copynumber: 8.6 Consensus size: 47
69750437 TATTTGAATA
*
69750447 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
69750494 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
69750543 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
69750592 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
69750641 AATGTGAACA-TGCATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** * *
69750688 AATGTGAACA-TGGGTATGTGTGATAAGGACGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
69750735 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
69750782 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
69750829 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69750856 TCCCGAAGGG
Statistics
Matches: 340, Mismatches: 16, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 198 0.58
49 140 0.41
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:69770785 original size:27 final size:27
Alignment explanation
Indices: 69770753--69771201 Score: 132
Period size: 27 Copynumber: 16.7 Consensus size: 27
69770743 TTAGTTTACC
* *
69770753 AAATTACTGAAATGCCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTATA
***
69770780 AAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTATA
** *
69770807 AAATTACC-ATTTTACCCTTGATTTATA
1 AAATTACCGA-AATACCCTCGATTTATA
* ** *
69770834 GAATTACC-ATTTTACCCTCAATTTATA
1 AAATTACCGA-AATACCCTCGATTTATA
* ** ** * *
69770861 GAATTA-TTATTTTACCCCCGATTTACA
1 AAATTACCGA-AATACCCTCGATTTATA
* **
69770888 GAATTACC-ATTTTACCCTCGATTTATA
1 AAATTACCGA-AATACCCTCGATTTATA
* * ** ** *
69770915 AAATT-TCTATTTTACCCTCGAAATACA
1 AAATTACCGA-AATACCCTCGATTTATA
* * ***
69770942 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCGAAATACCCTCGATTTATA
** *
69770969 AAATTACC-ATTTTACCC-CCAGTTTATA
1 AAATTACCGA-AATACCCTCGA-TTTATA
** * *
69770996 AAATTACC-ATTTTACCCTCGA-TTGTG
1 AAATTACCGA-AATACCCTCGATTTATA
** * *
69771022 AAATTACTAAAATACCC-CTAGTTTGTA
1 AAATTACCGAAATACCCTCGA-TTTATA
* * *
69771049 AAATTACCAAAATACCC-CTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTATA
* * **
69771076 AAATTACCAAAATACCC-CTAGTTCGTA
1 AAATTACCGAAATACCCTCGA-TTTATA
* * * *
69771103 AAATTACCAAAATACCACT-GGTTTTTG
1 AAATTACCGAAATACC-CTCGATTTATA
* * *
69771130 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTATA
* * *
69771157 AAATTACCAAAATACCCTTGATTTACA
1 AAATTACCGAAATACCCTCGATTTATA
*
69771184 AAATTACAGAAATACCCT
1 AAATTACCGAAATACCCT
69771202 TGACTTTTTT
Statistics
Matches: 343, Mismatches: 63, Indels: 32
0.78 0.14 0.07
Matches are distributed among these distances:
25 2 0.01
26 21 0.06
27 314 0.92
28 6 0.02
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTATA
Found at i:69770839 original size:54 final size:54
Alignment explanation
Indices: 69770767--69771018 Score: 326
Period size: 54 Copynumber: 4.7 Consensus size: 54
69770757 TACTGAAATG
* *
69770767 CCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTA
* * * **
69770821 CCCTTGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTATTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTA
* * * *
69770875 CCCCCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTTCTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTA
** * * *
69770929 CCCTCGAAATACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTA
* *
69770983 CCC-CCAGTTTATAAAATTACCATTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
69771019 GTGAAATTAC
Statistics
Matches: 169, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 2 0.01
54 167 0.99
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTA
Found at i:69770893 original size:81 final size:81
Alignment explanation
Indices: 69770789--69771016 Score: 316
Period size: 81 Copynumber: 2.8 Consensus size: 81
69770779 AAAATTACCG
* *
69770789 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTATAGAATTACCATTTTACCCTC-
1 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
* * *
69770853 AATTTATAGAATTATTA
66 AA-ATACAGAATTATCA
* * * * *
69770870 TTTTACCCCCGATTTACAGAATTACCATTTTACCCTCGATTTATAAAATTTCTATTTTACCCTCG
1 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
*
69770935 AAATACAGAATTATCG
66 AAATACAGAATTATCA
*
69770951 TTTTACCCTCGATTTATAAAATTACCATTTTACCC-CCAGTTTATAAAATTACCATTTTACCCTC
1 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTTATAAAATTACCATTTTACCCTC
69771015 GA
65 GA
69771017 TTGTGAAATT
Statistics
Matches: 128, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.02
81 124 0.97
82 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCG
AAATACAGAATTATCA
Found at i:69771143 original size:81 final size:81
Alignment explanation
Indices: 69771022--69771173 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 81
69771012 CTCGATTGTG
* *
69771022 AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGTAAAATTACCAA
1 AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAA
69771086 AATACCCCTAGTTCGTA
65 AATACCCCTAGTTCGTA
* * * * *
69771103 AAATTACCAAAATACCACTGGTTTTTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAA
1 AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
69771168 ATACCC
66 ATACCC
69771174 TTGATTTACA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
81 62 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTTCGTA
Found at i:69771197 original size:81 final size:79
Alignment explanation
Indices: 69771022--69771199 Score: 207
Period size: 81 Copynumber: 2.2 Consensus size: 79
69771012 CTCGATTGTG
*
69771022 AAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAA
1 AAATTAC-AAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAA
69771087 ATACCCCTAGTTCGTA
65 ATACCCCTAGTTCG-A
* * * * *
69771103 AAATTACCAAAATACCACTGGTTTTTGAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAA
1 AAATTA-CAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCT-AATTTGTAAAATTACCAA
* *
69771167 AATACCCTTGATTTAC-A
64 AATACCCCT-AGTT-CGA
69771184 AAATTACAGAAATACC
1 AAATTACA-AAATACC
69771200 CTTGACTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
80 6 0.07
81 73 0.87
82 4 0.05
83 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.30
Consensus pattern (79 bp):
AAATTACAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
TACCCCTAGTTCGA
Found at i:69771201 original size:54 final size:53
Alignment explanation
Indices: 69770954--69771200 Score: 221
Period size: 54 Copynumber: 4.6 Consensus size: 53
69770944 ATTATCGTTT
*** * * ***
69770954 TACCCTCGATTTATAAAATTACCATTTTACCCCCAGTTTATAAAATTACCATTT
1 TACCCT-GATTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * *
69771008 TACCCTCGA-TTGTGAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCT-GATTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * *
69771061 TACCCCTAATTTGTAAAATTACCAAAATACCCCTAGTTCGTAAAATTACCAAAA
1 TA-CCCTGATTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * * * * *
69771115 TACCACTGGTTTTTGAAATTATCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTGATTTATAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAA
*
69771169 TACCCTTGATTTACAAAATTA-CAGAAATACCC
1 TACCC-TGATTTATAAAATTACCA-AAATACCC
69771201 TTGACTTTTT
Statistics
Matches: 158, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
53 44 0.28
54 112 0.71
55 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (53 bp):
TACCCTGATTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
Found at i:69771202 original size:27 final size:27
Alignment explanation
Indices: 69771130--69771265 Score: 96
Period size: 27 Copynumber: 4.9 Consensus size: 27
69771120 CTGGTTTTTG
** **
69771130 AAATTATC-GAAATACCCTCAATTTGTA
1 AAATTA-CAGAAATACCCTTGATTTACA
69771157 AAATTACCA-AAATACCCTTGATTTACA
1 AAATTA-CAGAAATACCCTTGATTTACA
**
69771184 AAATTACAGAAATACCCTTGACTTTTTTTA
1 AAATTACAGAAATACCCTTGA---TTTACA
* * * *
69771214 AAATTATAGGAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTGATTTACA
** *
69771241 AAATTATTGAAATACCCTTGGTTTA
1 AAATTACAGAAATACCCTTGATTTA
69771266 TAGATTTACC
Statistics
Matches: 88, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
26 2 0.02
27 65 0.74
30 21 0.24
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTGATTTACA
Found at i:69772118 original size:25 final size:24
Alignment explanation
Indices: 69772084--69772153 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
69772074 AGGAAGTGCT
*
69772084 AAAAGGGCTCTGCCTCAGTTTACC
1 AAAAGGGCTCTGCCCCAGTTTACC
*
69772108 GAAAAGGGCTCTGCCCCAGTTTATC
1 -AAAAGGGCTCTGCCCCAGTTTACC
*
69772133 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTCTGCCCCAGTT
69772154 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTACC
Found at i:69772166 original size:24 final size:23
Alignment explanation
Indices: 69772084--69772180 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
69772074 AGGAAGTGCT
* * *
69772084 AAAAGGGCTCTGCCTCAGTTTACC
1 AAAAGGGCTATGCCCCAG-TTATC
*
69772108 GAAAAGGGCTCTGCCCCAGTTTATC
1 -AAAAGGGCTATGCCCCAG-TTATC
* *
69772133 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTATGCCCCAGTTATC
*
69772157 AAAAGAGGCTAAGCCTCCAGTTAT
1 AAAAG-GGCTATGCC-CCAGTTAT
69772181 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.06
24 13 0.21
25 46 0.73
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTATGCCCCAGTTATC
Found at i:69772360 original size:42 final size:42
Alignment explanation
Indices: 69772301--69772392 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
69772291 TAGTCTCCCC
* ** *
69772301 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
69772343 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
69772385 AAATGGGC
1 AAATGGGC
69772393 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:69774252 original size:27 final size:27
Alignment explanation
Indices: 69774209--69774326 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
69774199 AAAGTTACTA
69774209 AAATA-CCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACCG
* *
69774235 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACCG
*
69774262 AAATACTCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACCG
* * *
69774289 AAATACCCCTGTAGGGTAGGACTACCG
1 AAATACCCCTGTAAGGTAGAATTACCG
**
69774316 ATTTACCCCTG
1 AAATACCCCTG
69774327 GAGAGTAAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 5 0.06
27 75 0.94
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAAGGTAGAATTACCG
Found at i:69774287 original size:54 final size:53
Alignment explanation
Indices: 69774203--69774307 Score: 192
Period size: 54 Copynumber: 2.0 Consensus size: 53
69774193 ATTAGAAAAG
69774203 TTACTAAAATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
1 TTACTAAAATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
*
69774256 TTACTGAAATACTCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 TTACTAAAATAC-CCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
69774308 GACTACCGAT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (53 bp):
TTACTAAAATACCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
Found at i:69774621 original size:27 final size:26
Alignment explanation
Indices: 69774577--69774628 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69774567 CTCGCTGTAA
*
69774577 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
69774604 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
69774629 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:69774666 original size:67 final size:68
Alignment explanation
Indices: 69774558--69774697 Score: 201
Period size: 67 Copynumber: 2.1 Consensus size: 68
69774548 GAGGAAGCGT
* * * *
69774558 TCTGGCAGCCTCGCTGTAATCTGGTGGCCTCGCC-ACATATATCTGTTCTGGTGACTTCGTCACA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAACATATATCTGTTCTGGTGACCTAGCCACA
69774622 ATA
66 ATA
* * *
69774625 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCATATATATATCTGTTCTGGTGGCCTAGCCAC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCA-ACATATATCTGTTCTGGTGACCTAGCCAC
69774690 AATA
65 AATA
69774694 TCTG
1 TCTG
69774698 TATCTGGTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
67 32 0.50
69 32 0.50
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (68 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAACATATATCTGTTCTGGTGACCTAGCCACA
ATA
Found at i:69777929 original size:40 final size:40
Alignment explanation
Indices: 69777869--69778052 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
69777859 TATTCGAATG
*
69777869 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
69777909 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* *
69777949 ATATCCGGGCTAAGA-CCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
* * *
69777989 ATATCCGAGCTAAG-TCCTGAAGGCATTTATGCTAGTGGCC
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
*
69778029 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
69778053 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.02
40 116 0.94
41 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:69778002 original size:80 final size:80
Alignment explanation
Indices: 69777869--69778052 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
69777859 TATTCGAATG
* * *
69777869 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCC-GAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCTGAAGGC
* * *
69777933 ATTTGTGCGAGTTGCT
65 ATTTATGCGAGTGGCC
* *
69777949 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCTAGCGACTATATCC-GAGCTAAGTCCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGA-CTAAGTCCTGAAGGC
*
69778013 ATTTATGCTAGTGGCC
65 ATTTATGCGAGTGGCC
69778029 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
69778053 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 5 0.05
80 87 0.95
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCTGAAGGCA
TTTATGCGAGTGGCC
Found at i:69780353 original size:27 final size:27
Alignment explanation
Indices: 69780323--69780424 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
69780313 CGATTAGCAA
* *
69780323 AATTAATAAAATACCCCTCTAAGGTAG
1 AATTAATGAAATACCCCTGTAAGGTAG
** *
69780350 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTAATGAAATACCCCTGTAAGGTAG
* * * *
69780377 AATTATTGACATACTCTTGTAAGGTAG
1 AATTAATGAAATACCCCTGTAAGGTAG
**
69780404 AATTACCGAAATACCCCTGTA
1 AATTAATGAAATACCCCTGTA
69780425 GGGATGGACT
Statistics
Matches: 59, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (27 bp):
AATTAATGAAATACCCCTGTAAGGTAG
Found at i:69780381 original size:54 final size:54
Alignment explanation
Indices: 69780323--69780427 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
69780313 CGATTAGCAA
69780323 AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
69780377 AATTATTGACATACTCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGG
1 AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTGTAGGG
69780428 ATGGACTACC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:69783000 original size:54 final size:54
Alignment explanation
Indices: 69782942--69783049 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
69782932 CGATTAGCAA
69782942 AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTATAGGGTAG
* * * * * * *
69782996 AATTATTGACATACTCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTATAGGGTAG
69783050 GACTACCGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTAATAAAATACCCCTCTAAGGTAGAATTACCGAAATACCCCTATAGGGTAG
Found at i:69783056 original size:27 final size:27
Alignment explanation
Indices: 69782950--69783075 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 27
69782940 AAAATTAATA
* *
69782950 AAATACCCCTCTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* **
69782977 AAATACCCCTATAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
69783004 ACATACTCTTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
69783031 AAATACCCCTGTAGGGTAGGACTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
69783058 ATTTACCCCTAG-AGGGTA
1 AAATACCCCT-GTAGGGTA
69783076 AAATGACTAT
Statistics
Matches: 79, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
27 78 0.99
28 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:69786001 original size:26 final size:27
Alignment explanation
Indices: 69785958--69786075 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
69785948 AAATTTACTA
69785958 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACCG
* *
69785985 AAATA-CCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACCG
**
69786011 AAATACTTCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACCG
* * *
69786038 AAATACCCCTGTAGGGTAGGACTACCG
1 AAATACCCCTGTAAGGTAGAATTACCG
**
69786065 ATTTACCCCTG
1 AAATACCCCTG
69786076 GAGAGTAAAA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 24 0.31
27 53 0.69
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAAGGTAGAATTACCG
Found at i:69786015 original size:53 final size:54
Alignment explanation
Indices: 69785952--69786056 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 54
69785942 ATTAGCAAAT
69785952 TTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATA-CCCTGTAGGGTAGAA
1 TTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
* **
69786005 TTACTGAAATACTTCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 TTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
69786057 GACTACCGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 35 0.73
54 13 0.27
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
TTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
Found at i:69787898 original size:40 final size:40
Alignment explanation
Indices: 69787854--69787936 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
69787844 ATTTCAACCC
69787854 ACAGAATTTCACCATTTTCATATTTCAACTCTAGTGTTTT
1 ACAGAATTTCACCATTTTCATATTTCAACTCTAGTGTTTT
69787894 ACAGAATTTCACCATTTTCATATTTCAACTCTAGTGTTTT
1 ACAGAATTTCACCATTTTCATATTTCAACTCTAGTGTTTT
69787934 ACA
1 ACA
69787937 ATCTACCTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.43
Consensus pattern (40 bp):
ACAGAATTTCACCATTTTCATATTTCAACTCTAGTGTTTT
Found at i:69791100 original size:79 final size:81
Alignment explanation
Indices: 69790991--69791173 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
69790981 TACTCGTTCA
* *
69790991 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
69791054 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
69791071 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
69791134 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
* *
69791150 AAAGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
69791174 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.67
80 27 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:69791173 original size:40 final size:40
Alignment explanation
Indices: 69790970--69791173 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
69790960 CGGAATTTAA
** *
69790970 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69791010 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69791050 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
69791089 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69791129 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAAC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69791169 CCGGA
1 CCGGA
69791174 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69795625 original size:23 final size:23
Alignment explanation
Indices: 69795595--69795643 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
69795585 GGTCGAGCGA
69795595 AACCTCTATCCGTCAACTCTTGC
1 AACCTCTATCCGTCAACTCTTGC
69795618 AACCTCTATCCGTCAACTCTTGC
1 AACCTCTATCCGTCAACTCTTGC
69795641 AAC
1 AAC
69795644 TGAGCTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.24, C:0.39, G:0.08, T:0.29
Consensus pattern (23 bp):
AACCTCTATCCGTCAACTCTTGC
Found at i:69799118 original size:40 final size:39
Alignment explanation
Indices: 69799059--69799172 Score: 142
Period size: 39 Copynumber: 2.9 Consensus size: 39
69799049 CCTTCGAATT
* **
69799059 TAACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACA
1 TAACCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACA
* *
69799098 TAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACT
1 TA-ACCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACA
69799138 TAACCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAACCGGATTTAGTAACTCGCACAAATGCCTTCGG
69799173 ATCTTAGTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
39 33 0.51
40 32 0.49
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
TAACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACA
Found at i:69799163 original size:39 final size:40
Alignment explanation
Indices: 69799061--69799225 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
69799051 TTCGAATTTA
** *
69799061 ACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAG
1 ACCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAG
* *
69799101 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-
1 ACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG
*
69799140 ACCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAG
1 ACCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAG
* * * *
69799180 TCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAG
1 ACCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAG
*
69799220 CCCGGA
1 ACCGGA
69799226 CATCATTCGA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
38 3 0.03
39 33 0.31
40 59 0.56
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ACCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG
Found at i:69799209 original size:79 final size:79
Alignment explanation
Indices: 69799058--69799218 Score: 193
Period size: 79 Copynumber: 2.0 Consensus size: 79
69799048 ACCTTCGAAT
** * *
69799058 TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTAGCACA
69799123 AATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* * * * *
69799137 TTAACCGGATTTAG-TAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGC
1 TTAACCGGATATAGCT-ACTCGCACAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TAGC
69799200 ACAAA-GCCTTCGGGAC
63 ACAAATGCCTTCGGGAC
69799216 TTA
1 TTA
69799219 GCCCGGACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 4 0.06
79 58 0.83
80 8 0.11
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTAGCACA
AATGCCTTCGGGAC
Found at i:69831739 original size:23 final size:23
Alignment explanation
Indices: 69831710--69831758 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
69831700 TGAAAGCTCA
69831710 GTTGCAAGAGTTGACGGATAGAG
1 GTTGCAAGAGTTGACGGATAGAG
69831733 GTTGCAAGAGTTGACGGATAGAG
1 GTTGCAAGAGTTGACGGATAGAG
69831756 GTT
1 GTT
69831759 TCGCTCGACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.08, G:0.39, T:0.24
Consensus pattern (23 bp):
GTTGCAAGAGTTGACGGATAGAG
Found at i:69834793 original size:11 final size:11
Alignment explanation
Indices: 69834777--69834805 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69834767 GTGATGGGCA
69834777 AGACATGTCAT
1 AGACATGTCAT
69834788 AGACATGTCAT
1 AGACATGTCAT
69834799 -GACATGT
1 AGACATGT
69834806 TGTGTGGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (11 bp):
AGACATGTCAT
Found at i:69836177 original size:39 final size:40
Alignment explanation
Indices: 69836055--69836247 Score: 211
Period size: 39 Copynumber: 5.0 Consensus size: 40
69836045 TTGAATGATG
* * * * *
69836055 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
69836094 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69836134 TCCGGGTTAAGTCCCGAAGGCATTTG-GCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
69836173 TCCGGGCTAAG-ACCGAAGGCATTTGTGTGAG-TACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
69836211 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
69836248 TAACCGGCTA
Statistics
Matches: 131, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 37 0.28
39 52 0.40
40 35 0.27
41 7 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69836208 original size:38 final size:39
Alignment explanation
Indices: 69836055--69836272 Score: 198
Period size: 39 Copynumber: 5.6 Consensus size: 39
69836045 TTGAATGATG
* * * * * *
69836055 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGACCGAAGGCATTTGTGC-GAGTTACTAAA
*
69836094 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
69836134 TCCGGGTTAAGTCCCGAAGGCATTTG-GCGAGATACTAAT
1 TCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTACTAAA
*
69836173 TCCGGGCTAAGACCGAAGGCATTTGTGTGAG-TACTAAA
1 TCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTACTAAA
* *
69836211 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69836251 -CC-GGCTATGTCCGAA-GCATTTG
1 TCCGGGCTAAGACCGAAGGCATTTG
69836273 AACGAGTAGC
Statistics
Matches: 149, Mismatches: 22, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
36 3 0.02
37 8 0.05
38 42 0.28
39 51 0.34
40 38 0.26
41 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69836222 original size:77 final size:79
Alignment explanation
Indices: 69836094--69836247 Score: 251
Period size: 77 Copynumber: 2.0 Consensus size: 79
69836084 AGTGACCATA
69836094 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT-
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
69836158 TGGCGAGATACTAAT
66 T-GCGAGATACTAAT
* *
69836173 TCCGGGCTAAGA-CCGAAGGCATTTGTGTGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATTG
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
*
69836236 TGCGAGTTACTA
66 TGCGAGATACTA
69836248 TAACCGGCTA
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
77 41 0.58
78 19 0.27
79 11 0.15
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGATACTAAT
Found at i:69839153 original size:84 final size:85
Alignment explanation
Indices: 69839041--69839244 Score: 302
Period size: 84 Copynumber: 2.4 Consensus size: 85
69839031 GTCAGAGACA
* *
69839041 TCGTGTAAGACCGTGTCTAGGACACAGGCCTTGATTGAGATTTACGTATAAGACCATGT-TGGGA
1 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGATATACGTATAAGACCATGTCTGGGA
*
69839105 CATCGGCATCGTATCTGATT
66 CATCGACATCGTATCTGATT
*
69839125 TCGTGTAAGACCGTGTTTAGGACACAGGCCTCGATTGAGATATACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGATATACGTATAAGACCATGTCTGGGA
*
69839190 CATCGACATCGTATCTGGTT
66 CATCGACATCGTATCTGATT
* * * * * *
69839210 TCATGTAAAACCCTGTCTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGAT
69839245 ATTGAATTAC
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 56 0.52
85 51 0.48
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGATATACGTATAAGACCATGTCTGGGA
CATCGACATCGTATCTGATT
Found at i:69839178 original size:43 final size:42
Alignment explanation
Indices: 69839046--69839179 Score: 132
Period size: 42 Copynumber: 3.2 Consensus size: 42
69839036 AGACATCGTG
* *
69839046 TAAGACCGTGTCTAGGACACAGGCCTTGATTGAGATTTACGTA
1 TAAGACCGTGTTTAGGACACAGGCCTCGATTGAGA-TTACGTA
* * * * *
69839089 TAAGACCATG-TTGGGACATC-GGCATCGTATCT--GATTTCGTG
1 TAAGACCGTGTTTAGGACA-CAGGCCTCG-AT-TGAGATTACGTA
69839130 TAAGACCGTGTTTAGGACACAGGCCTCGATTGAGATATACGTA
1 TAAGACCGTGTTTAGGACACAGGCCTCGATTGAGAT-TACGTA
69839173 TAAGACC
1 TAAGACC
69839180 ATGTCTGGGA
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
40 1 0.01
41 17 0.24
42 29 0.41
43 23 0.32
44 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCGTGTTTAGGACACAGGCCTCGATTGAGATTACGTA
Found at i:69839191 original size:43 final size:42
Alignment explanation
Indices: 69839046--69839191 Score: 138
Period size: 43 Copynumber: 3.5 Consensus size: 42
69839036 AGACATCGTG
* *
69839046 TAAGACCGTGTCTAGGACACAGGCCTTGATTGAGATTTACGTA
1 TAAGACCATGTCTAGGACACAGGCCTCGATTGAGA-TTACGTA
* * * *
69839089 TAAGACCATGT-TGGGACATC-GGCATCGTATCT--GATTTCGTG
1 TAAGACCATGTCTAGGACA-CAGGCCTCG-AT-TGAGATTACGTA
* *
69839130 TAAGACCGTGTTTAGGACACAGGCCTCGATTGAGATATACGTA
1 TAAGACCATGTCTAGGACACAGGCCTCGATTGAGAT-TACGTA
*
69839173 TAAGACCATGTCTGGGACA
1 TAAGACCATGTCTAGGACA
69839192 TCGACATCGT
Statistics
Matches: 81, Mismatches: 14, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
40 1 0.01
41 18 0.22
42 28 0.35
43 33 0.41
44 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (42 bp):
TAAGACCATGTCTAGGACACAGGCCTCGATTGAGATTACGTA
Found at i:69839262 original size:85 final size:84
Alignment explanation
Indices: 69839044--69839283 Score: 250
Period size: 85 Copynumber: 2.8 Consensus size: 84
69839034 AGAGACATCG
* * * * * *
69839044 TGTAAGACCGTGTCTAGGACACAGGCCTTGATTGAGATTTACGTATAAGACCATGTTGGGACATC
1 TGTAAAACCCTGTCTAGGACACAGGCATCGATTGAGATATACATATAAGACCATGTTGGGACATC
* *
69839109 GGCATCGTATCTGATTTCG
66 GACATCGTATCTGATTTCA
* * * * *
69839128 TGTAAGACCGTGTTTAGGACACAGGCCTCGATTGAGATATACGTATAAGACCATGTCTGGGACAT
1 TGTAAAACCCTGTCTAGGACACAGGCATCGATTGAGATATACATATAAGACCATGT-TGGGACAT
*
69839193 CGACATCGTATCTGGTTTCA
65 CGACATCGTATCTGATTTCA
* * * **
69839213 TGTAAAACCCTGTCTGGGACAGAGGCATCGATATTGA-AT-TACATGTAAGACCACATTCGGGAC
1 TGTAAAACCCTGTCTAGGACACAGGCATCG--ATTGAGATATACATATAAGACCATGTT-GGGAC
*
69839276 GTCGACAT
63 ATCGACAT
69839284 TATACTTGTT
Statistics
Matches: 135, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
84 54 0.40
85 74 0.55
86 2 0.01
87 5 0.04
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (84 bp):
TGTAAAACCCTGTCTAGGACACAGGCATCGATTGAGATATACATATAAGACCATGTTGGGACATC
GACATCGTATCTGATTTCA
Found at i:69851746 original size:24 final size:25
Alignment explanation
Indices: 69851719--69851769 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
69851709 GCCTAGCCTC
*
69851719 TTTTAAT-AACTGGAGTAAAGCCCT
1 TTTTAATAAACTGGAGCAAAGCCCT
* *
69851743 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGAGCAAAGCCCT
69851768 TT
1 TT
69851770 CGGTAAACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGAGCAAAGCCCT
Found at i:69851781 original size:24 final size:24
Alignment explanation
Indices: 69851726--69851793 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
69851716 CTCTTTTAAT
* * *
69851726 AACTGGAGTAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCC-TTTCGATA
*
69851751 AACTGGGGCAAAGCCCTTTCGGTA
1 AACTGGGGCAAAGCCCTTTCGATA
69851775 AACTGGGGCATAA-CCCTTT
1 AACTGGGGCA-AAGCCCTTT
69851794 TAGCACTTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 22 0.58
25 16 0.42
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTCGATA
Found at i:69852051 original size:27 final size:27
Alignment explanation
Indices: 69852009--69852238 Score: 264
Period size: 27 Copynumber: 8.5 Consensus size: 27
69851999 TAATTTTACC
*
69852009 CAAGGGTATCTCGGTAATTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTA
* *
69852036 CAAGGGTATTTTGGTACTTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTA
*
69852063 CAAGGGTATTTCGATAATTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTA
* ** * * *
69852090 CAGGGGTATTTCAATATTTTTACCCAA
1 CAAGGGTATTTCGGTAATTCTACCCTA
* *
69852117 TAGGGGTATTTCGGTAATTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTA
*
69852144 C-AGGGTTATTTCAGTAATTCTACCCTA
1 CAAGGG-TATTTCGGTAATTCTACCCTA
* *
69852171 TAGGGGTATTTCGGTAATTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTA
* * * *
69852198 TAGGGGTATTTTGGTAATTCTATCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTA
69852225 CAAGGGGTATTTCG
1 CAA-GGGTATTTCG
69852239 ATATTTTACA
Statistics
Matches: 172, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 157 0.91
28 12 0.07
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTCTACCCTA
Found at i:69852297 original size:27 final size:27
Alignment explanation
Indices: 69852201--69852448 Score: 187
Period size: 27 Copynumber: 9.2 Consensus size: 27
69852191 TACCCTATAG
* **
69852201 GGGTATTTTGGTAATTCTATCCTA-CAA
1 GGGTATTTTGGTAATTTTA-CAAATCAA
* * *
69852228 GGGGTATTTCGAT-ATTTTACAAATTAA
1 -GGGTATTTTGGTAATTTTACAAATCAA
* ** *
69852255 GAGTATTTTGACAATTTCACAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
69852282 GGGTATTTTGGTAATTTTAC-AAGCTAG
1 GGGTATTTTGGTAATTTTACAAATC-AA
* *
69852309 GGGTATTTTGGTAATTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* * *
69852336 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
** *
69852363 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
** *
69852390 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
** * ** *
69852417 AAGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
69852444 GGGTA
1 GGGTA
69852449 AAATAGTAAT
Statistics
Matches: 175, Mismatches: 41, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
26 14 0.08
27 149 0.85
28 12 0.07
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:69852394 original size:81 final size:80
Alignment explanation
Indices: 69852199--69852407 Score: 235
Period size: 81 Copynumber: 2.6 Consensus size: 80
69852189 TCTACCCTAT
* * *
69852199 AGGGGTATTTTGGTAATTCTATCCTACAAGGGGTATTTCGAT-ATTTTACAAATTAAGAGTATTT
1 AGGGGTATTTTGGTAATT-T-TACTACAAGGGGTATTTTGGTAATTTTACAAATTAAGAGTATTT
*
69852263 TGACAATTTCACAAATC
64 TGACAATTTCACAAACC
* * * * *
69852280 AAGGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACTA-CAAGGGGTATTTTGGTAATTTTACAAATTAAGAGTATTTT
* *
69852345 -AGTAATTTTACAAACC
65 GA-CAATTTCACAAACC
*
69852361 AGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTTACT-A-CAAGGGGTATTTTGGTAATTTT
69852408 GTAAACCAAA
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.03
80 15 0.14
81 88 0.81
82 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACTACAAGGGGTATTTTGGTAATTTTACAAATTAAGAGTATTTTG
ACAATTTCACAAACC
Found at i:69852448 original size:81 final size:81
Alignment explanation
Indices: 69852201--69852448 Score: 207
Period size: 81 Copynumber: 3.1 Consensus size: 81
69852191 TACCCTATAG
* * * * * ** *
69852201 GGGTATTTTGGTAATTCTATCCTA-CAAGGGGTATTTCGAT-ATTTTACAAATTAAGAGTATTTT
1 GGGTATTTTGGTAATT-T-TACAAGCGAGGGGTATTTTGGTAATTTTACAAACCAAAAGTATTTT
* *
69852264 -GACAATTTCACAAATCAA
64 AG-TAATTTTACAAATCAA
* ** ***
69852282 GGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAGCGAGGGGTATTTTGGTAATTTTACAAACCAAAAGTATTTTAG
* *
69852347 TAATTTTACAAACCAG
66 TAATTTTACAAATCAA
* * **
69852363 GGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAAAGTATTTTA
1 GGGTATTTTGGTAATTTTAC-AAGCGAGGGGTATTTTGGTAATTTTACAAACCAAAAGTATTTTA
** *
69852427 GTAATTTTGTAAATCGA
65 GTAATTTTACAAATCAA
69852444 GGGTA
1 GGGTA
69852449 AAATAGTAAT
Statistics
Matches: 137, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
79 3 0.02
80 14 0.10
81 116 0.85
82 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAGCGAGGGGTATTTTGGTAATTTTACAAACCAAAAGTATTTTAG
TAATTTTACAAATCAA
Found at i:69852455 original size:27 final size:27
Alignment explanation
Indices: 69852425--69852813 Score: 431
Period size: 27 Copynumber: 14.0 Consensus size: 27
69852415 AAAAGTATTT
* *
69852425 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
69852452 TAGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
69852479 -CGATAATTCTATAAATCGAGGGTAAAA
1 TAG-TAATTCTATAAATCGAGGGTAAAA
* * ***
69852506 CAATAATTCTATAAATCGACTATAAATCGA
1 TAGTAATTCTATAAATCGAGGGTAAA---A
69852536 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA
1 ---T-----AGTAATTCTATAAATCGAGGGTAAAA
69852571 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
69852598 TAGTAATTCTATAAATTGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
* **
69852625 TGGTAATTCTATAAATTAAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
69852652 -CGCTAATTCTATAAATCGAGGGTAAAA
1 TAG-TAATTCTATAAATCGAGGGTAAAA
* *
69852679 TGGTAATGCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
**
69852706 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
* *
69852733 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
* *
69852760 TGGTAATTCTATAAATAGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
**
69852787 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
69852814 CGGTAGTTTT
Statistics
Matches: 318, Mismatches: 29, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.01
27 291 0.92
28 1 0.00
30 1 0.00
32 1 0.00
35 1 0.00
38 21 0.07
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTATAAATCGAGGGTAAAA
Found at i:69852504 original size:38 final size:38
Alignment explanation
Indices: 69852489--69852562 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
69852479 CGATAATTCT
* *
69852489 ATAAATCGAGGGTAAAACAATAATTCTATAAATCGACT
1 ATAAATCGAGGGTAAAACAGTAATTCTATAAATCGACG
69852527 ATAAATCGAGGGTAAAACAGTAATTCTATAAATCGA
1 ATAAATCGAGGGTAAAACAGTAATTCTATAAATCGA
69852563 GGGTAAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (38 bp):
ATAAATCGAGGGTAAAACAGTAATTCTATAAATCGACG
Found at i:69852513 original size:81 final size:81
Alignment explanation
Indices: 69852425--69852815 Score: 478
Period size: 81 Copynumber: 4.7 Consensus size: 81
69852415 AAAAGTATTT
* * ** *
69852425 TAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
1 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
69852490 TAAATCGAGGGTAAAACAA
66 TAAATCGAGGGT--AA-AA
* * * *
69852509 TAATTCTATAAATCGACTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAA-TA
1 T-A----GT-AAT--TCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA
69852573 GTAATTCTATAAATCGAGGGTAAAA
58 -TAATTCTATAAATCGAGGGTAAAA
* * ** *
69852598 TAGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATTAAGGGTAAAACGCTAATTCTA
1 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
69852663 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * *
69852679 TGGTAATGCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTG
1 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
69852744 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* *
69852760 TGGTAATTCTATAAATAGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACG
69852816 GTAGTTTTAC
Statistics
Matches: 269, Mismatches: 28, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
81 190 0.71
83 3 0.01
84 2 0.01
85 1 0.00
88 1 0.00
89 4 0.01
90 5 0.02
91 1 0.00
92 62 0.23
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.28
Consensus pattern (81 bp):
TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
TAAATCGAGGGTAAAA
Found at i:69852539 original size:65 final size:65
Alignment explanation
Indices: 69852463--69852589 Score: 220
Period size: 65 Copynumber: 2.0 Consensus size: 65
69852453 AGTAATTCTG
69852463 TAAATCGAGGGTAAAAC-GATAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGACT
1 TAAATCGAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGACT
69852527 A
65 A
* *
69852528 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGA
1 TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGA
69852590 GGGTAAAATA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 58 0.98
66 1 0.02
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.27
Consensus pattern (65 bp):
TAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAATAATTCTATAAATCGACTA
Found at i:69852835 original size:27 final size:27
Alignment explanation
Indices: 69852525--69852818 Score: 453
Period size: 27 Copynumber: 10.9 Consensus size: 27
69852515 TATAAATCGA
**
69852525 CTATAAATCGAGGGTAAAACAGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852552 CTATAAATCGAGGGTAAAATAGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852579 CTATAAATCGAGGGTAAAATAGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852606 CTATAAATTGAGGGTAAAATGGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
** * *
69852633 CTATAAATTAAGGGTAAAACGCTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852660 CTATAAATCGAGGGTAAAATGGTAATG
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852687 CTATAAATCGAGGGTAAAACGGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
69852714 CTATAAATCGAGGGTAAAATGGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852741 CTGTAAATCGAGGGTAAAATGGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
* *
69852768 CTATAAATAGAGGGTAAAACGGTAATT
1 CTATAAATCGAGGGTAAAATGGTAATT
*
69852795 CTATAAATCGAGGGTAAAACGGTA
1 CTATAAATCGAGGGTAAAATGGTA
69852819 GTTTTACAAA
Statistics
Matches: 248, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 248 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
CTATAAATCGAGGGTAAAATGGTAATT
Found at i:69861286 original size:21 final size:20
Alignment explanation
Indices: 69861262--69861305 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
69861252 ATAATCCAAG
* *
69861262 ACAAGGGAATTACAATCAACT
1 ACAAGAGAACTACAATCAA-T
*
69861283 ACAATAGAACTACAATCAAT
1 ACAAGAGAACTACAATCAAT
69861303 ACA
1 ACA
69861306 CTCAAACGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.52, C:0.20, G:0.09, T:0.18
Consensus pattern (20 bp):
ACAAGAGAACTACAATCAAT
Found at i:69865994 original size:23 final size:23
Alignment explanation
Indices: 69865964--69866130 Score: 244
Period size: 23 Copynumber: 7.1 Consensus size: 23
69865954 CCTAGCCTCT
69865964 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
69865987 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
69866010 TTTTGATAACTGGGGCATAAGCCAT
1 -TTTAATAACTGGGGCATAAGCC-C
* *
69866035 TTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
69866058 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
69866081 TTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
69866105 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
69866128 TTT
1 TTT
69866131 TTCACTTACT
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
23 67 0.52
24 62 0.48
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:69866023 original size:24 final size:24
Alignment explanation
Indices: 69865957--69866131 Score: 257
Period size: 24 Copynumber: 7.4 Consensus size: 24
69865947 TTGGAGGCCT
69865957 AGCCTCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATA
*
69865982 AGCCC-TTTAATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
*
69866005 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
69866029 AGCCATTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69866053 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
69866076 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69866100 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
69866123 AGCCCTTTT
1 AGCCCTTTT
69866132 TCACTTACTC
Statistics
Matches: 135, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
23 64 0.47
24 67 0.50
25 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:69866131 original size:47 final size:47
Alignment explanation
Indices: 69865964--69866131 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
69865954 CCTAGCCTCT
* * *
69865964 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
* *
69866010 TTTTGATAACTGGGGCATAAGCCATTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
69866058 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
69866105 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
69866132 TCACTTACTC
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
47 93 0.82
48 20 0.18
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC
Found at i:69866207 original size:20 final size:20
Alignment explanation
Indices: 69866182--69866220 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69866172 TATGAATACA
69866182 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
69866202 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
69866221 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:69866226 original size:20 final size:20
Alignment explanation
Indices: 69866183--69866227 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
69866173 ATGAATACAT
**
69866183 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
69866203 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
69866223 CATGT
1 CATGT
69866228 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Done.