Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 215 of 290
Found at i:69869411 original size:19 final size:18
Alignment explanation
Indices: 69869383--69869420 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
69869373 GAGGCCACCA
*
69869383 TGGGCGTTCTCATGGGTT
1 TGGGCGTTCTCATGCGTT
69869401 TGGGCCGTTCTCATGCGTT
1 TGGG-CGTTCTCATGCGTT
69869420 T
1 T
69869421 TAGACGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.05, C:0.21, G:0.34, T:0.39
Consensus pattern (18 bp):
TGGGCGTTCTCATGCGTT
Found at i:69869813 original size:27 final size:27
Alignment explanation
Indices: 69869758--69869839 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 27
69869748 GTATTATACC
* *
69869758 GGTGGCTTCGCCACATATACTATTTCT
1 GGTGGCTTTGCCACATATACTATTACT
*
69869785 GGTGGCTTTGCCACATATACTGTTACT
1 GGTGGCTTTGCCACATATACTATTACT
** * *
69869812 GGCAGCTTTGCTATA-ATACTATTACT
1 GGTGGCTTTGCCACATATACTATTACT
69869838 GG
1 GG
69869840 AAGCTTTGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 12 0.26
27 35 0.74
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
GGTGGCTTTGCCACATATACTATTACT
Found at i:69869837 original size:26 final size:26
Alignment explanation
Indices: 69869774--69869875 Score: 96
Period size: 26 Copynumber: 3.9 Consensus size: 26
69869764 TTCGCCACAT
* * *
69869774 ATACTATTTCTGGTGGCTTTGCCACA
1 ATACTATTACTGGTAGCTTTGCTACA
* * *
69869800 TATACTGTTACTGGCAGCTTTGCTATA
1 -ATACTATTACTGGTAGCTTTGCTACA
* * * *
69869827 ATACTATTACTGGAAGCTTTGTTGCG
1 ATACTATTACTGGTAGCTTTGCTACA
*
69869853 ATACTATTACTGGTAGCCTTGCT
1 ATACTATTACTGGTAGCTTTGCT
69869876 GCGATATTGG
Statistics
Matches: 60, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 40 0.67
27 20 0.33
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (26 bp):
ATACTATTACTGGTAGCTTTGCTACA
Found at i:69869878 original size:26 final size:26
Alignment explanation
Indices: 69869827--69869881 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
69869817 CTTTGCTATA
* *
69869827 ATACTATTACTGGAAGCTTTGTTGCG
1 ATACTATTACTGGAAGCCTTGCTGCG
*
69869853 ATACTATTACTGGTAGCCTTGCTGCG
1 ATACTATTACTGGAAGCCTTGCTGCG
69869879 ATA
1 ATA
69869882 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (26 bp):
ATACTATTACTGGAAGCCTTGCTGCG
Found at i:69870022 original size:33 final size:33
Alignment explanation
Indices: 69869980--69870043 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
69869970 CATTACTGTA
*
69869980 CTGTACTGTTTCTGT-ATTGGGCTAAGGCCCACT
1 CTGTACTGTTTCT-TAATAGGGCTAAGGCCCACT
*
69870013 CTGTACTGTTTCTTAATAGGGCTCAGGCCCA
1 CTGTACTGTTTCTTAATAGGGCTAAGGCCCA
69870044 TACTGTTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (33 bp):
CTGTACTGTTTCTTAATAGGGCTAAGGCCCACT
Found at i:69879927 original size:46 final size:46
Alignment explanation
Indices: 69879860--69880029 Score: 162
Period size: 46 Copynumber: 3.7 Consensus size: 46
69879850 TGTAACCCGC
* *
69879860 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCAGGCGTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGACGTTCACAT
* * * * **
69879906 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGACGTTC-ACAT
* *** * * * * *
69879952 ACATCTCTCGAAATCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCAGACGTTCACAT
69879999 CCATAAGTGAACTCAGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
69880030 TTCGGATGCC
Statistics
Matches: 94, Mismatches: 27, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
45 1 0.01
46 61 0.65
47 31 0.33
48 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGACGTTCACAT
Found at i:69884374 original size:27 final size:26
Alignment explanation
Indices: 69884330--69884381 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69884320 CTCGCTGCAA
*
69884330 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
69884357 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
69884382 GTAGCCTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:69884435 original size:31 final size:32
Alignment explanation
Indices: 69884397--69884458 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
69884387 CTTGTTGCAA
* *
69884397 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCCTAGCCACAATATATATATCTGT
*
69884428 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
69884459 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:69884460 original size:27 final size:26
Alignment explanation
Indices: 69884420--69884479 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
69884410 CCACATATAT
* *
69884420 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
69884446 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
69884473 ATATCTA
1 ATATCTA
69884480 GCAGCTTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:69886135 original size:46 final size:46
Alignment explanation
Indices: 69886083--69886172 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
69886073 TGGGGTTACA
69886083 AGGCATTACCGATTCTAACCCAATTCAGAACAGATATTTTTTTTCG
1 AGGCATTACCGATTCTAACCCAATTCAGAACAGATATTTTTTTTCG
69886129 AGGCATTACCGATTCTAACCCAATTCAGAACAGATATTTTTTTT
1 AGGCATTACCGATTCTAACCCAATTCAGAACAGATATTTTTTTT
69886173 TACACTTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (46 bp):
AGGCATTACCGATTCTAACCCAATTCAGAACAGATATTTTTTTTCG
Found at i:69896922 original size:54 final size:54
Alignment explanation
Indices: 69896839--69896984 Score: 195
Period size: 54 Copynumber: 2.7 Consensus size: 54
69896829 GGATAAGTTT
* * *
69896839 TAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATATCCCTATAGGA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
* * *
69896893 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
* * *
69896947 TTGAATTACCGAGATACCCTTGTGGGGTA-AAGTTACCA
1 TAGAATTACCGAAATACCCTTGTAGGGTAGAA-TTACCA
69896985 TTTTGCCCCT
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 79 0.98
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
TAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGA
Found at i:69896974 original size:27 final size:27
Alignment explanation
Indices: 69896839--69896983 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
69896829 GGATAAGTTT
*
69896839 TAGAATTACCGAAATACCCTTGTAAGG
1 TAGAATTACCGAAATACCCTTGTAGGG
* *
69896866 TAGAATTACCGAAATATCCC-TATAGGA
1 TAGAATTACCGAAATA-CCCTTGTAGGG
69896893 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGG
* * *
69896920 TAGAAATACCAAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCTTGTAGGG
* * *
69896947 TTGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCTTGTAGGG
69896974 TA-AAGTTACC
1 TAGAA-TTACC
69896984 ATTTTGCCCC
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.05
27 92 0.92
28 3 0.03
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCTTGTAGGG
Found at i:69897722 original size:67 final size:67
Alignment explanation
Indices: 69897614--69897789 Score: 266
Period size: 67 Copynumber: 2.6 Consensus size: 67
69897604 GAGGAAGCAT
69897614 TCTGGCAGA-CTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCCTCACA
1 TCTGGCA-ACCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCCTCACA
69897678 ATA
65 ATA
* *
69897681 TCTGGCAACCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCCTCACAA
69897746 TA
66 TA
* * * *
69897748 TCTGGCAGCCTCGCTGTAAT-TCGGTGGCTTCACCACATATAT
1 TCTGGCAACCTCGCTGCAATCT-GGTGGCCTCGCCACATATAT
69897790 ATATCTAAAT
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
66 2 0.02
67 99 0.98
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (67 bp):
TCTGGCAACCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTATTCTGGTGACTTCCTCACAA
TA
Found at i:69897744 original size:27 final size:26
Alignment explanation
Indices: 69897700--69897751 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
69897690 CTCGCTGCAA
*
69897700 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
69897727 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
69897752 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:69901124 original size:29 final size:29
Alignment explanation
Indices: 69901069--69901152 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 29
69901059 GTGAGCATGA
* * *
69901069 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
69901097 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
69901126 ATATACAGGTGATTTGGGCCTAATGGG
1 ATATAAATGTGATTTGGGCCTAATGGG
69901153 AAATATGAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 11 0.22
29 39 0.78
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:69904031 original size:15 final size:15
Alignment explanation
Indices: 69903999--69904027 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69903989 ATATTTTGTG
69903999 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
69904014 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
69904028 ATTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:69912309 original size:14 final size:16
Alignment explanation
Indices: 69912284--69912316 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
69912274 GTATTTTGTG
69912284 TTTATCATGTGTG-AA
1 TTTATCATGTGTGCAA
69912299 TTTAT-ATGTGTGCAA
1 TTTATCATGTGTGCAA
69912314 TTT
1 TTT
69912317 TTGTAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.24, C:0.06, G:0.18, T:0.52
Consensus pattern (16 bp):
TTTATCATGTGTGCAA
Found at i:69916134 original size:33 final size:33
Alignment explanation
Indices: 69916092--69916168 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
69916082 TGCATTTTGC
69916092 ACTGTACTGATACTAAATAGGGCTTTGGCCCAG
1 ACTGTACTGATACTAAATAGGGCTTTGGCCCAG
* * *
69916125 ACTGTACTGATACTGACTAGGGCTTTTGCCCAG
1 ACTGTACTGATACTAAATAGGGCTTTGGCCCAG
69916158 ACTGTACTGAT
1 ACTGTACTGAT
69916169 GCTGTGTTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (33 bp):
ACTGTACTGATACTAAATAGGGCTTTGGCCCAG
Found at i:69916472 original size:17 final size:18
Alignment explanation
Indices: 69916432--69916480 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
69916422 AGTCTAGGAA
*
69916432 AACACGAGTTTTCAAAAT
1 AACACGAGTTTTCAAAAG
* *
69916450 AGCACGA-TTTTCTAAAG
1 AACACGAGTTTTCAAAAG
*
69916467 AACACGAGCTTTCA
1 AACACGAGTTTTCA
69916481 GCAACAAAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (18 bp):
AACACGAGTTTTCAAAAG
Found at i:69923921 original size:32 final size:33
Alignment explanation
Indices: 69923885--69923956 Score: 119
Period size: 32 Copynumber: 2.2 Consensus size: 33
69923875 TTTTGCACTA
* *
69923885 TACTGTTACTGAATAGGGCTTTGGTCCAGACT-
1 TACTGATACTGAATAGGGCTTTGGCCCAGACTG
69923917 TACTGATACTGAATAGGGCTTTGGCCCAGACTG
1 TACTGATACTGAATAGGGCTTTGGCCCAGACTG
69923950 TACTGAT
1 TACTGAT
69923957 GTTGTGTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
32 30 0.81
33 7 0.19
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (33 bp):
TACTGATACTGAATAGGGCTTTGGCCCAGACTG
Found at i:69924260 original size:17 final size:18
Alignment explanation
Indices: 69924220--69924268 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
69924210 AGTCTAGGAA
*
69924220 AACACGAGTTTTCAAAAT
1 AACACGAGTTTTCAAAAG
* *
69924238 AGCACGA-TTTTCTAAAG
1 AACACGAGTTTTCAAAAG
*
69924255 AACACGAGCTTTCA
1 AACACGAGTTTTCA
69924269 GCAATAAAGT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (18 bp):
AACACGAGTTTTCAAAAG
Found at i:69928261 original size:40 final size:40
Alignment explanation
Indices: 69928224--69928408 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
69928214 GCTACTCGTT
*
69928224 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * * **
69928264 CAATTGCCTTCGGGACTTAACCCGGATTTATTAACTCGGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
69928304 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
69928343 CAAATGCTTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69928384 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69928409 CATCATTCAA
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 73 0.62
41 13 0.11
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69943812 original size:31 final size:31
Alignment explanation
Indices: 69943769--69943852 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
69943759 TTAGTCTTGA
69943769 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
69943799 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
69943830 CATATCACTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
69943853 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:69943923 original size:42 final size:42
Alignment explanation
Indices: 69943876--69943967 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
69943866 TGGCCCTTAG
* * *
69943876 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAACGAATGTATGCAA
*
69943918 GCCCATTTCAATATCACATGTAATTTCAACGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAACGAATGTATGCAA
69943960 GCCCATTT
1 GCCCATTT
69943968 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAACGAATGTATGCAA
Found at i:69944140 original size:24 final size:24
Alignment explanation
Indices: 69944102--69944159 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
69944092 CTAGAGGCCT
*
69944102 AGCCTCTTTTAATAA-CTGGGGCAA
1 AGCC-CTTTTAATAAGCTAGGGCAA
*
69944126 AGTCCTTTCTAATAAGCTAGGGCAA
1 AGCCCTTT-TAATAAGCTAGGGCAA
69944151 AGCCCTTTT
1 AGCCCTTTT
69944160 CGGTAAACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 4 0.14
24 10 0.34
25 15 0.52
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAAGCTAGGGCAA
Found at i:69944150 original size:25 final size:23
Alignment explanation
Indices: 69944088--69944159 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
69944078 GCTTTATCAT
**
69944088 ATAACTAGAGGCCTAGCCTCTTTTA
1 ATAACTAG-GGCAAAGCC-CTTTTA
* *
69944113 ATAACTGGGGCAAAGTCCTTTCTA
1 ATAACTAGGGCAAAGCCCTTT-TA
69944137 ATAAGCTAGGGCAAAGCCCTTTT
1 ATAA-CTAGGGCAAAGCCCTTTT
69944160 CGGTAAACTG
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 4 0.10
24 13 0.33
25 22 0.56
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (23 bp):
ATAACTAGGGCAAAGCCCTTTTA
Found at i:69945025 original size:27 final size:27
Alignment explanation
Indices: 69944995--69945059 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
69944985 GGGCATATTC
69944995 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
69945022 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
69945049 GTCTTTTTACC
1 GTCATTTTACC
69945060 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:69945272 original size:110 final size:108
Alignment explanation
Indices: 69945093--69945290 Score: 254
Period size: 110 Copynumber: 1.8 Consensus size: 108
69945083 CATCCTACAA
* ***
69945093 GGGTGTTTTGGTAAATCTACAAACCGAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA
1 GGGTATTTTGGTAAATCTACAAACCGAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCTA
* *
69945158 TAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAG
66 TAA-TTTTACAAACT-AAGGGTATTTCTGTAATTTTGTAAATTAG
* * ** *
69945203 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCATTGGTATTT-TG
1 GGGTATTTTGGTAAATCTACAAACCGAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCT-
*
69945267 GTAATTTTACAAACTAAGGGTATT
65 ATAATTTTACAAACTAAGGGTATT
69945291 GTGGTAATTC
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
108 9 0.12
109 10 0.13
110 56 0.75
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (108 bp):
GGGTATTTTGGTAAATCTACAAACCGAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCTA
TAATTTTACAAACTAAGGGTATTTCTGTAATTTTGTAAATTAG
Found at i:69945295 original size:27 final size:27
Alignment explanation
Indices: 69945091--69945299 Score: 125
Period size: 27 Copynumber: 7.7 Consensus size: 27
69945081 TTCATCCTAC
* * * *
69945091 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* ** ** *
69945118 GAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
69945145 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
** *
69945173 CAAGGGTATTTCT-GTAATTTTGTAAATT
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* *
69945201 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* ** * *
69945228 GAGGGTATTTCAGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
**
69945255 ATTGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
69945282 AAGGGTATTGTGGTAATT
1 AAGGGTATTTTGGTAATT
69945300 CTATCCTACA
Statistics
Matches: 137, Mismatches: 41, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
26 1 0.01
27 107 0.78
28 15 0.11
29 14 0.10
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:69945296 original size:81 final size:81
Alignment explanation
Indices: 69945177--69945332 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
69945167 GAAAGTCAAG
** * * * * **
69945177 GGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCAG
1 GGTATTTCTGTAATTTTACAAACTAAGGGTATTGTGGTAATTCTATCAAACAG-GGGTATTTCAG
69945241 TAATTTCACAAACCATT
65 TAATTTCACAAACCATT
**
69945258 GGTATTT-TGGTAATTTTACAAACTAAGGGTATTGTGGTAATTCTATCCTACAGGGGTATTTCAG
1 GGTATTTCT-GTAATTTTACAAACTAAGGGTATTGTGGTAATTCTATCAAACAGGGGTATTTCAG
69945322 TAATTTCACAA
65 TAATTTCACAA
69945333 TCAAGGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 1 0.02
81 59 0.94
82 3 0.05
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (81 bp):
GGTATTTCTGTAATTTTACAAACTAAGGGTATTGTGGTAATTCTATCAAACAGGGGTATTTCAGT
AATTTCACAAACCATT
Found at i:69945318 original size:54 final size:54
Alignment explanation
Indices: 69945093--69945290 Score: 155
Period size: 54 Copynumber: 3.6 Consensus size: 54
69945083 CATCCTACAA
* * * ** *** *
69945093 GGGTGTTTTGGTAAATCTACAAACCGAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAG
* * * * * *** **
69945147 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCAGTAATTTCACAAACCAG
* * *
69945203 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAG
*
69945257 TGGTATTTTGGTAATTTTACAAACTAAGGGTATT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATT
69945291 GTGGTAATTC
Statistics
Matches: 112, Mismatches: 28, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
54 61 0.54
55 17 0.15
56 34 0.30
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAG
Found at i:69945448 original size:81 final size:81
Alignment explanation
Indices: 69945331--69945528 Score: 274
Period size: 81 Copynumber: 2.4 Consensus size: 81
69945321 GTAATTTCAC
* * * *
69945331 AATCAAGGGTAAAACGGTAAATT-TGTAAA-CTAAGGGTAAAATGGTAATTTTGTAAATCGAGGG
1 AATCAAGGGTAAAATGGT-AATTCTATAAATC-GAGGGTAAAATAGTAATTTTGTAAATCGAGGG
*
69945394 TAAAATGGTAATTCTGTA
64 TAAAACGGTAATTCTGTA
* *
69945412 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATTGAGGGTG
1 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
*
69945477 AAACGGTAATTTTGTA
66 AAACGGTAATTCTGTA
* *
69945493 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGG
69945529 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
80 4 0.04
81 100 0.95
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:69945513 original size:27 final size:27
Alignment explanation
Indices: 69945331--69945528 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
69945321 GTAATTTCAC
* * *
69945331 AATCAAGGGTAAAACGGTAAATTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
69945358 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
*
69945385 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
69945412 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
69945439 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
69945466 AATTGAGGGTGAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
69945493 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
69945520 AATCGAGGG
1 AATCGAGGG
69945529 CATTTCAGTA
Statistics
Matches: 149, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:69947575 original size:41 final size:41
Alignment explanation
Indices: 69947483--69947633 Score: 151
Period size: 41 Copynumber: 3.5 Consensus size: 41
69947473 AATGCCAACA
* * * *
69947483 TCCCAGACGTGGTGTTACATGTAATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACG-AATCAAATATCGATGCCA-TG
*
69947526 TCCCAGACAAGGTCTTACACGAATCAAATA-CGATGCCGATG
1 TCCCAGACATGGTCTTACACGAATCAAATATCGATGCC-ATG
* * *
69947567 TCCTAGACATGGTCTTACACGTAACCACATATATCGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AATCA-A-ATATCGATGCC-ATG
*
69947612 TCCCAGACTTGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGA
69947634 GAACACATAT
Statistics
Matches: 91, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 28 0.31
42 13 0.14
43 18 0.20
44 4 0.04
45 28 0.31
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAATCAAATATCGATGCCATG
Found at i:69947641 original size:45 final size:43
Alignment explanation
Indices: 69947511--69947644 Score: 148
Period size: 45 Copynumber: 3.1 Consensus size: 43
69947501 ATGTAATCAC
* *
69947511 ATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAATCA-A-
1 ATATCGATGCCAC-GTCCCAGACATGGTCTTACACGAAACACAT
* * *
69947553 ATA-CGATGCCGATGTCCTAGACATGGTCTTACACGTAACCACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACG-AAACACAT
*
69947597 ATATCGATGCCAACGTCCCAGACTTGGTCTTACACGAGAACACAT
1 ATATCGATGCC-ACGTCCCAGACATGGTCTTACACGA-AACACAT
69947642 ATA
1 ATA
69947645 AAAAATCATA
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
41 27 0.35
42 8 0.10
43 1 0.01
44 4 0.05
45 37 0.48
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
ATATCGATGCCACGTCCCAGACATGGTCTTACACGAAACACAT
Found at i:69955777 original size:20 final size:20
Alignment explanation
Indices: 69955731--69955777 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
69955721 AGCTCGTTTG
*
69955731 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
69955751 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
69955771 CAGCTCA
1 CAGCTCA
69955778 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:69957300 original size:12 final size:13
Alignment explanation
Indices: 69957276--69957303 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
69957266 AAAAGAGAAG
69957276 AAATTCAAAAAAA
1 AAATTCAAAAAAA
69957289 AAATTCAAAAAAA
1 AAATTCAAAAAAA
69957302 AA
1 AA
69957304 GGAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATTCAAAAAAA
Found at i:69964439 original size:27 final size:27
Alignment explanation
Indices: 69964404--69964594 Score: 144
Period size: 27 Copynumber: 7.1 Consensus size: 27
69964394 GTTAAGACTC
69964404 CTGACTTGTAAAATTACTGAAATATCCT
1 CTGACTTGTAAAATTACTGAAATA-CCT
* *
69964432 CTG-GTTGTAAAATTACTGAAACACC-
1 CTGACTTGTAAAATTACTGAAATACCT
* * *
69964457 CTTAATTTGTGAAATTACTGAAATACC-
1 C-TGACTTGTAAAATTACTGAAATACCT
* * *
69964484 CTCGATTTGTGAAATTACCGAAATACC-
1 CT-GACTTGTAAAATTACTGAAATACCT
* * *
69964511 CTTGACTTGTAAATTTATTGAAATACCC
1 C-TGACTTGTAAAATTACTGAAATACCT
* *
69964539 CTGACTTGTAAAATGACCGAAATACC-
1 CTGACTTGTAAAATTACTGAAATACCT
*
69964565 CTTGTA-GTGTAAAATTA-TCGAAATACCT
1 C-TG-ACTTGTAAAATTACT-GAAATACCT
69964593 CT
1 CT
69964595 TAAGGTAAAA
Statistics
Matches: 134, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.01
26 5 0.04
27 121 0.90
28 7 0.05
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (27 bp):
CTGACTTGTAAAATTACTGAAATACCT
Found at i:69964561 original size:81 final size:81
Alignment explanation
Indices: 69964409--69964591 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 81
69964399 GACTCCTGAC
* * * * * * *
69964409 TTGTAAAATTACTGAAATATCCTCTGGTTGTAAAATTACTGAAACACCCTTAATTTGTGAAATTA
1 TTGTAAAATTACCGAAATACCCTCTGCTTGTAAAATTACTGAAACACCCCTAACTTGTAAAATGA
*
69964474 CTGAAATACCCTCGAT
66 CCGAAATACCCTCGAT
* * * * *
69964490 TTGTGAAATTACCGAAATACCCT-TGACTTGTAAATTTATTGAAATACCCCTGACTTGTAAAATG
1 TTGTAAAATTACCGAAATACCCTCTG-CTTGTAAAATTACTGAAACACCCCTAACTTGTAAAATG
*
69964554 ACCGAAATACCCTTG-T
65 ACCGAAATACCCTCGAT
* *
69964570 AGTGTAAAATTATCGAAATACC
1 -TTGTAAAATTACCGAAATACC
69964592 TCTTAAGGTA
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 3 0.04
81 80 0.96
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACCGAAATACCCTCTGCTTGTAAAATTACTGAAACACCCCTAACTTGTAAAATGA
CCGAAATACCCTCGAT
Found at i:69964568 original size:54 final size:54
Alignment explanation
Indices: 69964405--69964591 Score: 193
Period size: 54 Copynumber: 3.5 Consensus size: 54
69964395 TTAAGACTCC
* * * *
69964405 TGACTTGTAAAATTACTGAAATATCCTCTG-GTTGTAAAATTACTGAAACACCCT
1 TGACTTGTAAAATTACTGAAATA-CCCCTGACTTGTAAAATTACCGAAATACCCT
* * * * *
69964459 TAATTTGTGAAATTACTGAAATA-CCCTCGATTTGTGAAATTACCGAAATACCCT
1 TGACTTGTAAAATTACTGAAATACCCCT-GACTTGTAAAATTACCGAAATACCCT
* * *
69964513 TGACTTGTAAATTTATTGAAATACCCCTGACTTGTAAAATGACCGAAATACCCT
1 TGACTTGTAAAATTACTGAAATACCCCTGACTTGTAAAATTACCGAAATACCCT
*
69964567 TGTA-GTGTAAAATTA-TCGAAATACC
1 TG-ACTTGTAAAATTACT-GAAATACC
69964592 TCTTAAGGTA
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 3 0.03
53 2 0.02
54 100 0.91
55 5 0.05
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (54 bp):
TGACTTGTAAAATTACTGAAATACCCCTGACTTGTAAAATTACCGAAATACCCT
Found at i:69967481 original size:40 final size:40
Alignment explanation
Indices: 69967416--69967491 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
69967406 TATACATATA
**
69967416 TAGCAGAAGCTATCTCCAATTGCACACCAAGTGCCACATT
1 TAGCAGAAGCTATCTCCAACCGCACACCAAGTGCCACATT
* * *
69967456 TAGCAGAAGCTATTTCGAACCGCACACTAAGTGCCA
1 TAGCAGAAGCTATCTCCAACCGCACACCAAGTGCCA
69967492 TTTTTTTAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (40 bp):
TAGCAGAAGCTATCTCCAACCGCACACCAAGTGCCACATT
Found at i:69971097 original size:42 final size:41
Alignment explanation
Indices: 69971012--69971350 Score: 245
Period size: 42 Copynumber: 7.7 Consensus size: 41
69971002 TCGTTTACTT
* *
69971012 GATGCCATAGT-CCA-ACTATGGTCTTACATAAAGTCTCACATC
1 GATGCCAT-GTCCCAGA-TATGGTCTTACACAAA-TCTCATATC
* * *
69971054 GATGCCATGTCCCAGACATGGTCTTATACGAAATCACATATC
1 GATGCCATGTCCCAGATATGGTCTTACAC-AAATCTCATATC
* * * *
69971096 GATG-CA-GCATCCCAAACACGGTCTTACACAAAATCTCATACC
1 GATGCCATG--TCCCAGATATGGTCTTACAC-AAATCTCATATC
* * *
69971138 GAAGCCATATCCCAGATATGGTCTTACACGTAATCTCATATC
1 GATGCCATGTCCCAGATATGGTCTTACAC-AAATCTCATATC
69971180 GATGCCGATGTCATTCCCAGATATGGTCTTACACAAGATCTCATATCGATGC
1 GATGCC-ATG----TCCCAGATATGGTCTTACACAA-ATCTC--AT--AT-C
*
69971232 TGATGCCATATCCCAGATATGGTCTTACACAAGATCTCATATC
1 -GATGCCATGTCCCAGATATGGTCTTACACAA-ATCTCATATC
* * *
69971275 GATGTTGATGCCATATCCTAGATATGGTCTTACACAGGATCTCATATC
1 ------GATGCCATGTCCCAGATATGGTCTTACACA-AATCTCATATC
*
69971323 GATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCATGTCCCAGATATGGTCTTACA
69971351 TGTCATCACG
Statistics
Matches: 244, Mismatches: 28, Indels: 50
0.76 0.09 0.16
Matches are distributed among these distances:
40 1 0.00
41 4 0.02
42 119 0.49
43 9 0.04
44 2 0.01
46 3 0.01
47 25 0.10
48 68 0.28
49 2 0.01
51 2 0.01
52 3 0.01
53 6 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
GATGCCATGTCCCAGATATGGTCTTACACAAATCTCATATC
Found at i:69971153 original size:84 final size:89
Alignment explanation
Indices: 69971031--69971350 Score: 292
Period size: 84 Copynumber: 3.6 Consensus size: 89
69971021 GTCCAACTAT
* * * * * * * *
69971031 GGTCTTACATAAAGTCTCACATCGATGCCATGTCCCAGACATGGTCTTATACGAAATCACATATC
1 GGTCTTACACAAAATCTCATACCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
69971096 GATG-C-A-G-CA-TCCCAAACAC
66 GATGCCGATGTCATTCCCAAACAC
* *
69971115 GGTCTTACACAAAATCTCATACCGAAGCCATATCCCAGATATGGTCTTACACGTAATCTCATATC
1 GGTCTTACACAAAATCTCATACCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
* * *
69971180 GATGCCGATGTCATTCCCAGATAT
66 GATGCCGATGTCATTCCCAAACAC
*
69971204 GGTCTTACACAAGATCTCATATCGATGCTGATGCCATATCCCAGATATGGTCTTACAC-AAGATC
1 GGTCTTACACAAAATCTCATA-C----C-GATGCCATATCCCAGATATGGTCTTACACGAA-ATC
** * * * * *
69971268 TCATATCGATGTTGATGCCATATCCTAGATAT
59 TCATATCGATGCCGATGTCAT-TCCCAAACAC
** * * *
69971300 GGTCTTACACAGGATCTCATATCGATGCCATGTCCCAGACATGGTCTTACA
1 GGTCTTACACAAAATCTCATACCGATGCCATATCCCAGATATGGTCTTACA
69971351 TGTCATCACG
Statistics
Matches: 199, Mismatches: 24, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
84 59 0.30
85 1 0.01
86 1 0.01
87 1 0.01
88 2 0.01
89 27 0.14
90 27 0.14
91 1 0.01
94 2 0.01
95 49 0.25
96 29 0.15
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (89 bp):
GGTCTTACACAAAATCTCATACCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATC
GATGCCGATGTCATTCCCAAACAC
Found at i:69971260 original size:48 final size:48
Alignment explanation
Indices: 69971141--69971327 Score: 297
Period size: 48 Copynumber: 3.9 Consensus size: 48
69971131 TCATACCGAA
* *
69971141 GCCATATCCCAGATATGGTCTTACACGTA-ATCTCATATCGATGCCGAT
1 GCCATATCCCAGATATGGTCTTACAC-AAGATCTCATATCGATGCTGAT
*
69971189 GTCAT-TCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGAT
*
69971236 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGTTGAT
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGAT
* *
69971284 GCCATATCCTAGATATGGTCTTACACAGGATCTCATATCGATGC
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGC
69971328 CATGTCCCAG
Statistics
Matches: 129, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.01
47 42 0.33
48 86 0.67
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTGAT
Found at i:69971381 original size:37 final size:37
Alignment explanation
Indices: 69971322--69971424 Score: 165
Period size: 37 Copynumber: 2.8 Consensus size: 37
69971312 GATCTCATAT
69971322 CGATGCCAT-GTCCCAGAC-ATGGTCTTACATGTCATCA
1 CGATGCCATAG-CCCA-ACTATGGTCTTACATGTCATCA
69971359 CGATGCCATAGCCCAACTATGGTCTTACATGTCATCA
1 CGATGCCATAGCCCAACTATGGTCTTACATGTCATCA
*
69971396 CGATGCCATAGCCCAGCTATGGTCTTACA
1 CGATGCCATAGCCCAACTATGGTCTTACA
69971425 CTTACCACAT
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
36 2 0.03
37 60 0.95
38 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (37 bp):
CGATGCCATAGCCCAACTATGGTCTTACATGTCATCA
Found at i:69972813 original size:27 final size:27
Alignment explanation
Indices: 69972783--69972976 Score: 253
Period size: 27 Copynumber: 7.2 Consensus size: 27
69972773 TACTGAAATG
**
69972783 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* * * *
69972810 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTACAGAATTACCATTTTA
* **
69972837 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
69972864 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
69972891 TCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
69972918 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
* *
69972945 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCATTTTA
*
69972972 ACCTC
1 CCCTC
69972977 AATTATGAAA
Statistics
Matches: 148, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACCATTTTA
Found at i:69972898 original size:81 final size:81
Alignment explanation
Indices: 69972783--69972976 Score: 280
Period size: 81 Copynumber: 2.4 Consensus size: 81
69972773 TACTGAAATG
* * * * *
69972783 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTAACCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
**
69972848 CAAAATTACTGTTTTA
66 CAAAATTACCATTTTA
* *
69972864 CCCTCGATTTATAGAATTACCATTTTATCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTAACCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
69972929 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
69972945 CCCTCAATTTACAAAATTACCATTTTAACCTC
1 CCCTCGATTTATAGAATTACCATTTTAACCTC
69972977 AATTATGAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 101 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTAACCTCGATTTACAGAATTACCATTTCACCCTCGATTTA
CAAAATTACCATTTTA
Found at i:69973042 original size:27 final size:27
Alignment explanation
Indices: 69973012--69973189 Score: 139
Period size: 27 Copynumber: 6.6 Consensus size: 27
69973002 TGTAAGATAG
*
69973012 AATTACCACAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
69973039 AATTACCAAAATATCTCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
69973066 AATTTCCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** *
69973093 AATTACGGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
69973120 AGTTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* *
69973147 AATTA-CAGAAATA-CCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTAG-TTTGTAA
* *
69973174 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
69973190 TTGGAGGATG
Statistics
Matches: 117, Mismatches: 27, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
26 9 0.08
27 100 0.85
28 8 0.07
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:69973079 original size:54 final size:54
Alignment explanation
Indices: 69973012--69973189 Score: 155
Period size: 54 Copynumber: 3.3 Consensus size: 54
69973002 TGTAAGATAG
* * *
69973012 AATTACCACAATACCCCTAGTTTGTAAAATTACCAAAATA-TCTCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTC-AATTTGTAA
* * * * **
69973066 AATTTCCAAAATACCACTGGTTTGTGAAATTACGGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
* ** ** *
69973120 AGTTACCAAAATACCCCT-GATTTACAAAATTA-CAGAAATACCCTTGATTTGTAG
1 AATTACCAAAATACCCCTAG-TTTGTAAAATTACCA-AAATACCCTCAATTTGTAA
* *
69973174 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
69973190 TTGGAGGATG
Statistics
Matches: 99, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
53 1 0.01
54 95 0.96
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:69974016 original size:20 final size:20
Alignment explanation
Indices: 69973991--69974071 Score: 128
Period size: 20 Copynumber: 4.0 Consensus size: 20
69973981 GGATATGATT
*
69973991 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
69974011 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
69974031 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
69974051 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
69974071 A
1 A
69974072 TTGGGTTGGG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
20 55 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:69974135 original size:26 final size:26
Alignment explanation
Indices: 69974106--69974241 Score: 165
Period size: 25 Copynumber: 5.3 Consensus size: 26
69974096 GAGGAAGTGC
69974106 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
69974132 AAAAGGGCTCATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
69974158 -AAAGGGCTTATGCCCCAGTTTATTAA
1 AAAAGGGCTTATGCCCCAGTTTATT-G
*
69974184 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
69974209 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
69974232 AAAAGAGGCT
1 AAAAG-GGCT
69974242 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 38 0.40
26 35 0.37
27 9 0.09
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:69974198 original size:51 final size:53
Alignment explanation
Indices: 69974106--69974235 Score: 189
Period size: 51 Copynumber: 2.5 Consensus size: 53
69974096 GAGGAAGTGC
* *
69974106 AAAAGGGCTTATGCCCCAGTTTATT-GAAAAGGGCTCATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTAAAAAAGGGCTCATGCCCCAGTTTACCG
* *
69974158 -AAAGGGCTTATGCCCCAGTTTATTAAAAAAGGGCT-TTGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTAAAAAAGGGCTCATGCCCCAGTTTACCG
69974209 AAAAGGGCTT-TGCCCCAG-TTATTAAAA
1 AAAAGGGCTTATGCCCCAGTTTATTAAAA
69974236 GAGGCTAGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
50 9 0.12
51 45 0.62
52 18 0.25
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (53 bp):
AAAAGGGCTTATGCCCCAGTTTATTAAAAAAGGGCTCATGCCCCAGTTTACCG
Found at i:69977610 original size:48 final size:48
Alignment explanation
Indices: 69977312--69977609 Score: 506
Period size: 48 Copynumber: 6.2 Consensus size: 48
69977302 TACAAGACAA
* *
69977312 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69977360 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69977408 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69977456 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69977504 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
69977552 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
69977600 ATGTGTATAT
1 ATATGTATAT
69977610 TGCGGCCGAA
Statistics
Matches: 241, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 241 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:69978719 original size:31 final size:31
Alignment explanation
Indices: 69978684--69978798 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
69978674 CGTTTACACT
*
69978684 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69978715 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
69978746 AAAGGCTTCGGCCCAATGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69978777 AAAGTCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
69978799 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:69983288 original size:28 final size:28
Alignment explanation
Indices: 69983257--69983327 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
69983247 AATGTCTCAT
**
69983257 ACACTAAGTGTTATACTCAATATCTCGC
1 ACACTAAGTGCCATACTCAATATCTCGC
* * * * *
69983285 ACACCAAGTGCCATTCTTAATATTTTGC
1 ACACTAAGTGCCATACTCAATATCTCGC
69983313 ACACTAAGTGCCATA
1 ACACTAAGTGCCATA
69983328 TACATATATA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.31
Consensus pattern (28 bp):
ACACTAAGTGCCATACTCAATATCTCGC
Found at i:69986867 original size:43 final size:44
Alignment explanation
Indices: 69986782--69986900 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 44
69986772 ACATAGGATT
* *
69986782 TCGATATGTGATTT-CATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATCTGATTTACATGTAAGACCACGTCTGGGACGATGGCA
* * * *
69986825 TCGATTTCTGATTTACGTGTAAGACCATGTTTGGGAC-ATGGCA
1 TCGATATCTGATTTACATGTAAGACCACGTCTGGGACGATGGCA
*
69986868 TCGATATGTGA-TTACATGTAAGACCACGTCTGG
1 TCGATATCTGATTTACATGTAAGACCACGTCTGG
69986901 AACATTGGCG
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 19 0.30
43 26 0.41
44 19 0.30
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (44 bp):
TCGATATCTGATTTACATGTAAGACCACGTCTGGGACGATGGCA
Found at i:69987757 original size:13 final size:13
Alignment explanation
Indices: 69987741--69987766 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69987731 ATATGTTTCA
69987741 TGATTGTTTTGGT
1 TGATTGTTTTGGT
69987754 TGATTGTTTTGGT
1 TGATTGTTTTGGT
69987767 ACTGATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:69989473 original size:27 final size:27
Alignment explanation
Indices: 69989442--69989495 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
69989432 TCATTCATCT
*
69989442 CATAGGGGCATACTAGTCATTTTATCA
1 CATAGGGGCATAATAGTCATTTTATCA
69989469 CATAGGGGCATAATAGTCATTTTATCA
1 CATAGGGGCATAATAGTCATTTTATCA
69989496 ATTGGGAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (27 bp):
CATAGGGGCATAATAGTCATTTTATCA
Found at i:70009243 original size:28 final size:28
Alignment explanation
Indices: 70009204--70009262 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
70009194 GATTTTTTAC
*
70009204 AAAATGTCAATT-AGGGATTAAATTGAG
1 AAAATGTAAATTGAGGGATTAAATTGAG
* *
70009231 AAAAGTGTAAATTGAGGGGTTAAATTGTG
1 AAAA-TGTAAATTGAGGGATTAAATTGAG
70009260 AAA
1 AAA
70009263 TAAGTGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 4 0.15
28 7 0.26
29 16 0.59
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.29
Consensus pattern (28 bp):
AAAATGTAAATTGAGGGATTAAATTGAG
Found at i:70009841 original size:43 final size:43
Alignment explanation
Indices: 70009745--70009846 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 43
70009735 TACCGAGAGT
* * * * * *
70009745 GATTACATATAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTAGAACATTGGCATTGTAATCA
*
70009788 GATTATGTGTAAGACCATGTCTAGAACATTGGCATCAT-TAATCA
1 GATTACGTGTAAGACCATGTCTAGAACATTGGCAT--TGTAATCA
70009832 -ATTACGTGTAAGACC
1 GATTACGTGTAAGACC
70009847 CTGTTTGGGA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
43 44 0.90
44 4 0.08
45 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTAGAACATTGGCATTGTAATCA
Found at i:70010128 original size:123 final size:123
Alignment explanation
Indices: 70009909--70010160 Score: 450
Period size: 123 Copynumber: 2.0 Consensus size: 123
70009899 ATATGGCATT
*
70009909 GTACGAGCTTATGTGATTTCTAAGTATCCTTAATTATTCCAAATGGTTCAACGGGAAAATTCAAG
1 GTACGAGCTTATGTGATTTCTAAGTATCCTTAATGATTCCAAATGGTTCAACGGGAAAATTCAAG
*
70009974 TCAAGAAAGAATATGTGAATGAGCTAAATGACTCAGGTACGTATGAAATTCATACGAG
66 TCAAGAAAGAATATGTGAATGAGCTAAATGACTCAGGTACGTACGAAATTCATACGAG
*
70010032 GTACGAGCTTATGTGATTTCTAAGTATCCTTAATGATTCCAAATGGTTCAACGGGCAAATTCAAG
1 GTACGAGCTTATGTGATTTCTAAGTATCCTTAATGATTCCAAATGGTTCAACGGGAAAATTCAAG
* *
70010097 TCGAGAAAGAATATGTGAATGAGCTAAATGACTCAGGTACGTACGAAATTCATATGAG
66 TCAAGAAAGAATATGTGAATGAGCTAAATGACTCAGGTACGTACGAAATTCATACGAG
*
70010155 GCACGA
1 GTACGA
70010161 AATTCATATG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 123 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (123 bp):
GTACGAGCTTATGTGATTTCTAAGTATCCTTAATGATTCCAAATGGTTCAACGGGAAAATTCAAG
TCAAGAAAGAATATGTGAATGAGCTAAATGACTCAGGTACGTACGAAATTCATACGAG
Found at i:70013355 original size:24 final size:24
Alignment explanation
Indices: 70013328--70013376 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70013318 ACACTACCGA
70013328 AAATCTGCCATTGAAGGGGGTTTG
1 AAATCTGCCATTGAAGGGGGTTTG
70013352 AAATCTGCCATTGAAGGGGGTTTG
1 AAATCTGCCATTGAAGGGGGTTTG
70013376 A
1 A
70013377 GAGAATTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.29
Consensus pattern (24 bp):
AAATCTGCCATTGAAGGGGGTTTG
Found at i:70018950 original size:51 final size:49
Alignment explanation
Indices: 70018774--70018964 Score: 177
Period size: 50 Copynumber: 3.8 Consensus size: 49
70018764 TAGCCAAAGC
* * * * *
70018774 TATCTGGTACGCATAGTAGCCTGCACATAATACTACACATGCGACCA-AT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CATAT
* * * * *
70018823 TATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACAT-AT
* * * * *
70018873 CATCTGATACACGTAGTATCCTGCACTTAGTACTACACATGTGATCATAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CATA-T
* * *
70018924 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATG
70018965 CAACCTCACA
Statistics
Matches: 113, Mismatches: 25, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
48 1 0.01
49 36 0.32
50 40 0.35
51 36 0.32
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACATAT
Found at i:70025112 original size:46 final size:45
Alignment explanation
Indices: 70024976--70025195 Score: 203
Period size: 46 Copynumber: 4.7 Consensus size: 45
70024966 TTTGTTTGTG
* ** *
70024976 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGTTATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
* * * *
70025021 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGA
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
** *
70025069 CAGCTAGCATAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
*
70025116 AGCCT-GTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGA
1 AG-CTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
*
70025161 TAG-TCAGTGTAAGACCATGTTTGGGACATGGCATC
1 -AGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
70025196 AGCACCTTAC
Statistics
Matches: 143, Mismatches: 21, Indels: 18
0.79 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 71 0.50
47 41 0.29
48 27 0.19
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:70025195 original size:94 final size:94
Alignment explanation
Indices: 70024976--70025195 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 94
70024966 TTTGTTTGTG
** *
70024976 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGTTATGAGAGCCAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGAGAGCCAGTGTAAGACCATGT
* *
70025041 TTGGGACATGGCATCGGCATTGAGACGAC
66 CTGGGACATGGCATCGGCATCGAGACGAC
** * * *
70025070 AGCTAGCATAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTA-AGCCTGTGTAAGA-CATG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACG-AGAGCCAGTGTAAGACCATG
* *
70025133 TCTGGGACAT-GCATCGGC-TACGAGATGAT
65 TCTGGGACATGGCATCGGCAT-CGAGACGAC
*
70025162 AG-TCAGTGTAAGACCATGTTTGGGACATGGCATC
1 AGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
70025196 AGCACCTTAC
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
91 2 0.02
92 23 0.22
93 25 0.24
94 54 0.51
95 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATCGAGACGAC
Found at i:70029197 original size:40 final size:40
Alignment explanation
Indices: 70029138--70029349 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
70029128 CATTTGAATG
* *
70029138 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
70029178 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
70029218 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
70029258 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
70029298 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
70029338 ATATCC-GGCTAA
1 ATATCCGGGCTAA
70029350 ATTCCGAAGA
Statistics
Matches: 140, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 8 0.06
40 130 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:70029278 original size:80 final size:79
Alignment explanation
Indices: 70029142--70029358 Score: 310
Period size: 80 Copynumber: 2.7 Consensus size: 79
70029132 TGAATGATAT
* *
70029142 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
70029207 TGCGAGTTGCTATAC
65 TGCGAGTTACTAAAC
*
70029222 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
*
70029287 TGCGAGTTACTAAAT
65 TGCGAGTTACTAAAC
* * * *
70029302 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
70029359 AAACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.10
80 110 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAAC
Found at i:70031486 original size:75 final size:74
Alignment explanation
Indices: 70031391--70031540 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 74
70031381 CTACTCACTC
70031391 TTATATTTGTATGGAATTGATACCTCGTATGAGTATGCTAGTAGATTCCACTAAGTTTGTAATAA
1 TTATATTTGTATGGAATTGATACCTCGTATGAGTATGCTAGTAGATTCCACTAAGTTTGTAAT-A
70031456 AAGTGTCCAA
65 AAGTGTCCAA
* * *
70031466 TTATCTTTGTATGGATTTGATACCTCGTATGAGTATGCTAGTAGATTCCACTGAGTTTGTAATAA
1 TTATATTTGTATGGAATTGATACCTCGTATGAGTATGCTAGTAGATTCCACTAAGTTTGTAATAA
70031531 AGTGTCCAA
66 AGTGTCCAA
70031540 T
1 T
70031541 CCTCGAGGTA
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 12 0.17
75 60 0.83
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (74 bp):
TTATATTTGTATGGAATTGATACCTCGTATGAGTATGCTAGTAGATTCCACTAAGTTTGTAATAA
AGTGTCCAA
Found at i:70036196 original size:46 final size:47
Alignment explanation
Indices: 70036041--70036201 Score: 161
Period size: 46 Copynumber: 3.4 Consensus size: 47
70036031 AAGATAAGAT
* * * * * *
70036041 CATGTCTGTGACATGGCATCAACTTTGAGATGA-GAGCTAGCGTAGGA
1 CATGTCTGGGACATGGCATCGAC-TTGAGATGATGAGCCAGTGTAAGC
* * *
70036088 CATGTCTGGGACAT-GCATC-AGCTACGAGATGAT-AGTCAGTATAAGAC
1 CATGTCTGGGACATGGCATCGA-CT-TGAGATGATGAGCCAGTGTAAG-C
70036135 CATGTCTGGGACATGGCATCGACTTGAGAT-ATGAGCCAGTGTAAGC
1 CATGTCTGGGACATGGCATCGACTTGAGATGATGAGCCAGTGTAAGC
*
70036181 CATGTCTTGGACATGGCATCG
1 CATGTCTGGGACATGGCATCG
70036202 GCACCTTACC
Statistics
Matches: 95, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
45 2 0.02
46 43 0.45
47 42 0.44
48 7 0.07
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
CATGTCTGGGACATGGCATCGACTTGAGATGATGAGCCAGTGTAAGC
Found at i:70041640 original size:42 final size:42
Alignment explanation
Indices: 70041522--70041642 Score: 122
Period size: 42 Copynumber: 2.8 Consensus size: 42
70041512 AACATATACC
*
70041522 ATGCCAAC-ATCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACTATCCCAGACATGGTCTTA-ATGAAATCAAACATCG
* * * *
70041565 ATGCCACTATCCCAGACAGGGTCTTAACCGAAATCAGATAT-G
1 ATGCCACTATCCCAGACATGGTCTTAA-TGAAATCAAACATCG
*
70041607 ATGCCGA-TGTCCCAGACATGGTCTTAGATGAAATCA
1 ATGCC-ACTATCCCAGACATGGTCTTA-ATGAAATCA
70041643 CATAACGAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCACTATCCCAGACATGGTCTTAATGAAATCAAACATCG
Found at i:70047776 original size:47 final size:47
Alignment explanation
Indices: 70047718--70047847 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
70047708 GTGCGAATAA
* ** * ** *
70047718 TACCTTAATTTGGCTACGGGCCATGACATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAGAAGT
* *
70047765 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAGAAGT
*
70047812 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
70047848 TATCGATTGT
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:70051312 original size:40 final size:39
Alignment explanation
Indices: 70051254--70051415 Score: 155
Period size: 40 Copynumber: 4.1 Consensus size: 39
70051244 ATACTATTTG
* * * * *
70051254 ATTCAGGGTTACCAAAGTATAAACAAGGGCATGCATGTGC
1 ATTCAGGG-TATCGAAGTACAAACAAGGGCACGTATGTGC
* * *
70051294 ATTCATGGATATCGAAGTACAATCAAGGGCATGTATGTGC
1 ATTCA-GGGTATCGAAGTACAAACAAGGGCACGTATGTGC
* * * *
70051334 ATTCAGGGGTA-CTGAAGTATAATCAAGGGCACGTGTGTAC
1 ATTCA-GGGTATC-GAAGTACAAACAAGGGCACGTATGTGC
*
70051374 ATTCAGAGGTATCGAAGTACAAACAGGGGCACGTATGTGC
1 ATTCAG-GGTATCGAAGTACAAACAAGGGCACGTATGTGC
70051414 AT
1 AT
70051416 CTAGACAATA
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 2 0.02
40 96 0.95
41 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (39 bp):
ATTCAGGGTATCGAAGTACAAACAAGGGCACGTATGTGC
Found at i:70051387 original size:80 final size:80
Alignment explanation
Indices: 70051254--70051415 Score: 200
Period size: 80 Copynumber: 2.0 Consensus size: 80
70051244 ATACTATTTG
* * * *
70051254 ATTCAGGGTTACCAAAGTATAAACAAGGGCATGCATGTGCATTCATGGATATCGAAGTACAATCA
1 ATTCAGGGGTACCAAAGTATAAACAAGGGCACGCATGTACATTCATGGATATCGAAGTACAAACA
*
70051319 AGGGCATGTATGTGC
66 AGGGCACGTATGTGC
** * ** *
70051334 ATTCAGGGGTACTGAAGTATAATCAAGGGCACGTGTGTACATTCA-GAGGTATCGAAGTACAAAC
1 ATTCAGGGGTACCAAAGTATAAACAAGGGCACGCATGTACATTCATG-GATATCGAAGTACAAAC
*
70051398 AGGGGCACGTATGTGC
65 AAGGGCACGTATGTGC
70051414 AT
1 AT
70051416 CTAGACAATA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
79 1 0.01
80 68 0.99
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (80 bp):
ATTCAGGGGTACCAAAGTATAAACAAGGGCACGCATGTACATTCATGGATATCGAAGTACAAACA
AGGGCACGTATGTGC
Found at i:70059761 original size:58 final size:58
Alignment explanation
Indices: 70059699--70059816 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
70059689 TGACTTTTTA
* *
70059699 ATCTAGAGTTTAAGTTTGGTTATATATAAATCATGTTTAAATTTCTACATTCAATTAT
1 ATCTAGAGATTAAGCTTGGTTATATATAAATCATGTTTAAATTTCTACATTCAATTAT
70059757 ATCTAGAGATTAAGCTTGGTTATATATAAATCATGTTTAAATTTCTACATTCAATTAT
1 ATCTAGAGATTAAGCTTGGTTATATATAAATCATGTTTAAATTTCTACATTCAATTAT
70059815 AT
1 AT
70059817 TTTGAATTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.45
Consensus pattern (58 bp):
ATCTAGAGATTAAGCTTGGTTATATATAAATCATGTTTAAATTTCTACATTCAATTAT
Found at i:70060935 original size:22 final size:23
Alignment explanation
Indices: 70060893--70060941 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
70060883 ATTTAAATCC
*
70060893 TAATCTAAACCCCTTAATCAAAT
1 TAATCTAAAACCCTTAATCAAAT
* *
70060916 TAATCTAAAATCC-TAATCAATT
1 TAATCTAAAACCCTTAATCAAAT
70060938 TAAT
1 TAAT
70060942 TCAAAAAGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (23 bp):
TAATCTAAAACCCTTAATCAAAT
Found at i:70063279 original size:20 final size:20
Alignment explanation
Indices: 70063254--70063302 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
70063244 TCATTTTTCA
* *
70063254 ATAAAAATACGTA-AAAGTTT
1 ATAAAAATACATACAAA-ATT
70063274 ATAAAAATACATACAAAATT
1 ATAAAAATACATACAAAATT
70063294 ATAAAAATA
1 ATAAAAATA
70063303 TTTATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (20 bp):
ATAAAAATACATACAAAATT
Found at i:70064194 original size:3 final size:3
Alignment explanation
Indices: 70064186--70064220 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
70064176 AAATAGTGAA
70064186 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
70064221 AATAGCAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:70066264 original size:40 final size:40
Alignment explanation
Indices: 70066209--70066422 Score: 308
Period size: 40 Copynumber: 5.4 Consensus size: 40
70066199 TGATAACCGG
* *
70066209 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
*
70066249 GCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
* *
70066289 GCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
70066329 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-A
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
* * *
70066368 GGCTAAGTCCCGAAGGCATTTGAGCG-GGTAGCTATGTCCG-
1 -GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGA
*
70066408 GCTAATTCCCGAAGG
1 GCTAAGTCCCGAAGG
70066423 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGA
Found at i:70067934 original size:19 final size:20
Alignment explanation
Indices: 70067898--70067940 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
70067888 TTTGTACGAA
70067898 TTTATTTTAAAAAATATT-T
1 TTTATTTTAAAAAATATTAT
*
70067917 TTTA-TTTATAAAAGTATTAT
1 TTTATTTTA-AAAAATATTAT
70067937 TTTA
1 TTTA
70067941 ATAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 12 0.57
20 5 0.24
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TTTATTTTAAAAAATATTAT
Found at i:70068053 original size:24 final size:23
Alignment explanation
Indices: 70068021--70068066 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
70068011 ATTTTTTAAA
70068021 TAATTTTTAGTTTTAAAGTTTTTT
1 TAATTTTTAGTTTTAAA-TTTTTT
* *
70068045 TAATTTTTATTTTTGAATTTTT
1 TAATTTTTAGTTTTAAATTTTT
70068067 AAGAAGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (23 bp):
TAATTTTTAGTTTTAAATTTTTT
Found at i:70068470 original size:121 final size:122
Alignment explanation
Indices: 70068338--70068581 Score: 393
Period size: 121 Copynumber: 2.0 Consensus size: 122
70068328 ATAATTTATC
** *
70068338 TTTTTTTAAAATAGATTTAATTGTTTGACTAACGGAGGTAAC-AACTAGGGCAAAAAAGGTATTA
1 TTTTTTTAAAATAGATTTAATTGTTTGACTAACGGAGGT-ACTAACTAAAGCAAAAAAGGTATCA
*
70068402 CTTGTGAC-AAAAAACAATTAAGTACCAAGATGAGAAAAATGGTATAGTTAATACATA
65 CTTGTGACAAAAAAACAATTAAGTACCAAGATAAGAAAAATGGTATAGTTAATACATA
*
70068459 TTTTTTTAAAATAGATTTAATTGTTTGACTAACGGAGGTACTAACTAAAGCAAAAAGGGTATCAC
1 TTTTTTTAAAATAGATTTAATTGTTTGACTAACGGAGGTACTAACTAAAGCAAAAAAGGTATCAC
70068524 TTGTGACAAAAAAAAAACAATTAAGTACCAAGATAAGAAAAATGGTATAGTTAATACA
66 TTGTGAC---AAAAAAACAATTAAGTACCAAGATAAGAAAAATGGTATAGTTAATACA
70068582 AGTAGTACGG
Statistics
Matches: 113, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
120 2 0.02
121 65 0.58
125 46 0.41
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.29
Consensus pattern (122 bp):
TTTTTTTAAAATAGATTTAATTGTTTGACTAACGGAGGTACTAACTAAAGCAAAAAAGGTATCAC
TTGTGACAAAAAAACAATTAAGTACCAAGATAAGAAAAATGGTATAGTTAATACATA
Found at i:70078760 original size:11 final size:11
Alignment explanation
Indices: 70078744--70078768 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70078734 CATGTCTGAG
70078744 AAAGGGTAGGA
1 AAAGGGTAGGA
70078755 AAAGGGTAGGA
1 AAAGGGTAGGA
70078766 AAA
1 AAA
70078769 AATTATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.40, T:0.08
Consensus pattern (11 bp):
AAAGGGTAGGA
Found at i:70092380 original size:28 final size:29
Alignment explanation
Indices: 70092348--70092417 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
70092338 TAACATTTTC
* *
70092348 TTTTCAAAATATTGTGACTTTTA-AAA-TA
1 TTTTCAAAATATAGTG-CCTTTAGAAATTA
70092376 TTTTCTAAAATA-AGTGCCTTTAGAAATTA
1 TTTTC-AAAATATAGTGCCTTTAGAAATTA
70092405 TTTCTCAAAATAT
1 TTT-TCAAAATAT
70092418 GAATTTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
27 5 0.14
28 11 0.31
29 17 0.49
30 2 0.06
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (29 bp):
TTTTCAAAATATAGTGCCTTTAGAAATTA
Found at i:70094199 original size:16 final size:18
Alignment explanation
Indices: 70094172--70094204 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
70094162 TAGAATTGAC
70094172 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
70094189 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
70094205 GTTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:70102669 original size:19 final size:18
Alignment explanation
Indices: 70102632--70102675 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
70102622 ATACATATAG
70102632 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
70102649 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
70102668 TACTAATT
1 TAATAATT
70102676 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:70104617 original size:20 final size:20
Alignment explanation
Indices: 70104592--70104632 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
70104582 CCTCTATGGG
70104592 ATGTATTGTATGCAATGGTC
1 ATGTATTGTATGCAATGGTC
70104612 ATGTATTGTATGCAATGGTC
1 ATGTATTGTATGCAATGGTC
70104632 A
1 A
70104633 CGTGCTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (20 bp):
ATGTATTGTATGCAATGGTC
Found at i:70106212 original size:29 final size:29
Alignment explanation
Indices: 70106178--70106253 Score: 116
Period size: 29 Copynumber: 2.6 Consensus size: 29
70106168 GGCGTATCTG
*
70106178 AAAGGAAAGGCTTTATGGAAAACCTCTAT
1 AAAGGAAAGCCTTTATGGAAAACCTCTAT
* *
70106207 AAAGGAGAGCCTTTATGGCAAACCTCTAT
1 AAAGGAAAGCCTTTATGGAAAACCTCTAT
*
70106236 AAAGAAAAGCCTTTATGG
1 AAAGGAAAGCCTTTATGG
70106254 TGAGCCTCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (29 bp):
AAAGGAAAGCCTTTATGGAAAACCTCTAT
Found at i:70106271 original size:29 final size:28
Alignment explanation
Indices: 70106174--70106291 Score: 103
Period size: 29 Copynumber: 4.2 Consensus size: 28
70106164 TTGTGGCGTA
*
70106174 TCTGAAAGGAAAGGCTTTATGGAAAACC
1 TCTGAAAGGAAAGCCTTTATGGAAAACC
* * *
70106202 TCTATAAAGGAGAGCCTTTATGGCAAACC
1 TCT-GAAAGGAAAGCCTTTATGGAAAACC
* * ** *
70106231 TCTATAAAGAAAAGCCTTTATGGTGAGCC
1 TCT-GAAAGGAAAGCCTTTATGGAAAACC
* * *
70106260 TCTGAAAGGAAAGTCTTTGTGG-CAACC
1 TCTGAAAGGAAAGCCTTTATGGAAAACC
70106287 TCTGA
1 TCTGA
70106292 TAAAAGAAGC
Statistics
Matches: 74, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
27 8 0.11
28 18 0.24
29 48 0.65
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
TCTGAAAGGAAAGCCTTTATGGAAAACC
Found at i:70106353 original size:27 final size:26
Alignment explanation
Indices: 70106323--70106553 Score: 121
Period size: 27 Copynumber: 8.5 Consensus size: 26
70106313 TTTTAGATTT
70106323 AAAAGCCTTTGTGGCAATTCATGAAAG
1 AAAAGCCTTTGTGGCAATTC-TGAAAG
*
70106350 AAAAGCCCTAATG-GCGCAA-TCT-AAATG
1 AAAAG-CCT-TTGTG-GCAATTCTGAAA-G
*
70106377 AAAAGCCTTTATGGCAATTCATGAAAG
1 AAAAGCCTTTGTGGCAATTC-TGAAAG
* * ** *
70106404 GAAAGCCCTAATGACGCAA-TCTGAATG
1 AAAAG-CCT-TTGTGGCAATTCTGAAAG
*
70106431 AAAAGCCTTTGTGGTAATTCATGAAAG
1 AAAAGCCTTTGTGGCAATTC-TGAAAG
* ** *
70106458 TAAATGCCCCTGTGACGTAATT-TGAAAG
1 -AAAAGCCTTTGTG--GCAATTCTGAAAG
* * *
70106486 AAAAGTCTTGGTGGAAATTCTGAAAAG
1 AAAAGCCTTTGTGGCAATTCTG-AAAG
* * *
70106513 AAATGCCTTTGTGGCATAATGTGAAAG
1 AAAAGCCTTTGTGGCA-ATTCTGAAAG
* *
70106540 GAAAGCCTCTGTGG
1 AAAAGCCTTTGTGG
70106554 TGTATCATAA
Statistics
Matches: 153, Mismatches: 33, Indels: 36
0.69 0.15 0.16
Matches are distributed among these distances:
25 15 0.10
26 16 0.10
27 71 0.46
28 34 0.22
29 11 0.07
30 6 0.04
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGCCTTTGTGGCAATTCTGAAAG
Found at i:70106382 original size:54 final size:54
Alignment explanation
Indices: 70106323--70106466 Score: 225
Period size: 54 Copynumber: 2.6 Consensus size: 54
70106313 TTTTAGATTT
*
70106323 AAAAGCCTTTGTGGCAATTCATGAAAGAAAAGCCCTAATGGCGCAATCTAAATG
1 AAAAGCCTTTGTGGCAATTCATGAAAGAAAAGCCCTAATGACGCAATCTAAATG
* * *
70106377 AAAAGCCTTTATGGCAATTCATGAAAGGAAAGCCCTAATGACGCAATCTGAATG
1 AAAAGCCTTTGTGGCAATTCATGAAAGAAAAGCCCTAATGACGCAATCTAAATG
* *
70106431 AAAAGCCTTTGTGGTAATTCATGAAAGTAAATGCCC
1 AAAAGCCTTTGTGGCAATTCATGAAAG-AAAAGCCC
70106467 CTGTGACGTA
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 75 0.93
55 6 0.07
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (54 bp):
AAAAGCCTTTGTGGCAATTCATGAAAGAAAAGCCCTAATGACGCAATCTAAATG
Found at i:70106505 original size:55 final size:55
Alignment explanation
Indices: 70106323--70106519 Score: 190
Period size: 54 Copynumber: 3.6 Consensus size: 55
70106313 TTTTAGATTT
* * * *
70106323 AAAAGCCTTTGTGGCAATTCATGAAAGAAAAG-CCCTAATGGCGCAATCT-AAATG
1 AAAAGCCTTGGTGGAAATTCATGAAAGAAATGCCCCTAATGACGCAATCTGAAA-G
** * *
70106377 AAAAGCCTTTATGGCAATTCATGAAAGGAAA-G-CCCTAATGACGCAATCTGAATG
1 AAAAGCCTTGGTGGAAATTCATGAAA-GAAATGCCCCTAATGACGCAATCTGAAAG
* * * * *
70106431 AAAAGCCTTTGTGGTAATTCATGAAAGTAAATGCCCCT-GTGACGTAATTTGAAAG
1 AAAAGCCTTGGTGGAAATTCATGAAAG-AAATGCCCCTAATGACGCAATCTGAAAG
*
70106486 AAAAGTCTTGGTGGAAATTC-TGAAAAGAAATGCC
1 AAAAGCCTTGGTGGAAATTCATG-AAAGAAATGCC
70106520 TTTGTGGCAT
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
53 1 0.01
54 79 0.63
55 41 0.33
56 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (55 bp):
AAAAGCCTTGGTGGAAATTCATGAAAGAAATGCCCCTAATGACGCAATCTGAAAG
Found at i:70106538 original size:54 final size:55
Alignment explanation
Indices: 70106376--70106547 Score: 136
Period size: 54 Copynumber: 3.2 Consensus size: 55
70106366 CAATCTAAAT
** * * * ** * *
70106376 GAAAAGCCTTTATGGCAATTCATGAAAGGAAA-G-CCCTAATGACGCAATCTGAAT
1 GAAAAGCCTTGGTGGAAATTCATGAAAGTAAATGCCCCT-GTGACATAATGTGAAA
* * * *
70106430 GAAAAGCCTTTGTGGTAATTCATGAAAGTAAATGCCCCTGTGACGTAATTTGAAA
1 GAAAAGCCTTGGTGGAAATTCATGAAAGTAAATGCCCCTGTGACATAATGTGAAA
* ** *
70106485 GAAAAGTCTTGGTGGAAATTC-TGAAAAG-AAATGCCTTTGTGGCATAATGTGAAA
1 GAAAAGCCTTGGTGGAAATTCATG-AAAGTAAATGCCCCTGTGACATAATGTGAAA
*
70106539 GGAAAGCCT
1 GAAAAGCCT
70106548 CTGTGGTGTA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 59 0.60
55 35 0.36
56 4 0.04
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (55 bp):
GAAAAGCCTTGGTGGAAATTCATGAAAGTAAATGCCCCTGTGACATAATGTGAAA
Found at i:70118226 original size:42 final size:42
Alignment explanation
Indices: 70118118--70118239 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 42
70118108 TACCGTACCA
* * * * *
70118118 ATGCCATATCCCAAATATGGTCTTACCTGTAATCTCGTATTG
1 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCG
*
70118160 ATGCCAATATCCTAGCTATGGTCTTACATG-AAGTCTCATATCG
1 ATGCC-ATATCCTAGATATGGTCTTACATGTAA-TCTCATATCG
* * **
70118203 ATGTCATATCCTAGATATAGTCTTACACATAATCTCA
1 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCA
70118240 AATAACCCTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCG
Found at i:70120812 original size:137 final size:138
Alignment explanation
Indices: 70120574--70120831 Score: 358
Period size: 137 Copynumber: 1.9 Consensus size: 138
70120564 AAGGTTTCCA
** * *
70120574 GTTTTGGGTGCTAGTCTTGAAATGTCCTACCGATGGCTGAGCTTTGACTTTAGTTGCAGATACTT
1 GTTTTGGGTGCTAGTCTTGAAATGTCCTACCGATGGCTGAGCTCCGACATTAGTTGCAGATACTC
* * * * * *
70120639 GACAGCTTGTGTGAGTAGCACCGTGTACCTATGTTCCGACCCATAGCTTGTGTGAGCAAACCTAG
66 GACAGCTTGTGTGAGCAGCACCGTATAACTACGTTCCGACCCACAACTTGTGTGAGCAAACCTAG
70120704 GTTACTAT
131 GTTACTAT
* * *
70120712 GTTTTGGGTGTTGGTCTTG-AATGTCCTACCGATGGCTGAGGTCCGACATTAGTTGC-GAATACT
1 GTTTTGGGTGCTAGTCTTGAAATGTCCTACCGATGGCTGAGCTCCGACATTAGTTGCAG-ATACT
* *
70120775 CGACAGCTTGTGTGAGCAGCATCGTATAACTACGTTCCGACCGACAACTTGTGTGAG
65 CGACAGCTTGTGTGAGCAGCACCGTATAACTACGTTCCGACCCACAACTTGTGTGAG
70120832 TAGGCCTATT
Statistics
Matches: 104, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
136 1 0.01
137 86 0.83
138 17 0.16
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (138 bp):
GTTTTGGGTGCTAGTCTTGAAATGTCCTACCGATGGCTGAGCTCCGACATTAGTTGCAGATACTC
GACAGCTTGTGTGAGCAGCACCGTATAACTACGTTCCGACCCACAACTTGTGTGAGCAAACCTAG
GTTACTAT
Found at i:70124382 original size:27 final size:23
Alignment explanation
Indices: 70124330--70124378 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
70124320 GATGAAAATA
70124330 AATAGTTCATAAACAAATATGTT
1 AATAGTTCATAAACAAATATGTT
70124353 AATAGTTCATAAACAAATATGTT
1 AATAGTTCATAAACAAATATGTT
70124376 AAT
1 AAT
70124379 TAATAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (23 bp):
AATAGTTCATAAACAAATATGTT
Found at i:70125394 original size:20 final size:20
Alignment explanation
Indices: 70125369--70125406 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70125359 AGGGACTAAA
*
70125369 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
70125389 ATGAAAAATTATGAAATT
1 ATGAAAAATTATAAAATT
70125407 CAATGAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:70125412 original size:20 final size:20
Alignment explanation
Indices: 70125368--70125413 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
70125358 TAGGGACTAA
* *
70125368 AATGAAAAGTTATAAAATTT
1 AATGAAAAATTATAAAATTC
* *
70125388 GATGAAAAATTATGAAATTC
1 AATGAAAAATTATAAAATTC
70125408 AATGAA
1 AATGAA
70125414 TACATGTGCT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.13, T:0.30
Consensus pattern (20 bp):
AATGAAAAATTATAAAATTC
Found at i:70126920 original size:42 final size:42
Alignment explanation
Indices: 70126861--70126981 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 42
70126851 TTAGGGTTAT
* *
70126861 TGAGATTACGTGTAAGACCATACCTGGGATATGGCATCGGTA
1 TGAGATTACGTGTAAGACCATACCTAGGATATGGCATCGATA
* ** *
70126903 TGAGATTTCGTGTAAGACCATAGTTAGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATACCTAGGATA-TGGCATCGATA
* * *
70126946 CGAGATTACATGTAAGACCATATCTAGGATATGGCA
1 TGAGATTACGTGTAAGACCATACCTAGGATATGGCA
70126982 CTGGTACGGT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATACCTAGGATATGGCATCGATA
Found at i:70134709 original size:40 final size:40
Alignment explanation
Indices: 70134665--70134835 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
70134655 ACGTTTATAT
* *
70134665 AAAAATGCCATTATAGATCGAGCATTAGCGGCGCTTTCTG
1 AAAAATGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
* * **
70134705 AAAAATGCCACTATAGATTGAGCATTAGCGGCTCTTTTCA
1 AAAAATGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * *
70134745 AAAAATGCCGCTATAGATTGAGCATTAGTGGTGCTTTTTG
1 AAAAATGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
* *
70134785 AAAAACGCCACTATAGGTCGAGCATTAGCGGCGCTTTTTG
1 AAAAATGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
*
70134825 AAAAACGCCAC
1 AAAAATGCCAC
70134836 AAAAAAATAA
Statistics
Matches: 113, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (40 bp):
AAAAATGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:70135149 original size:7 final size:7
Alignment explanation
Indices: 70135139--70135306 Score: 110
Period size: 7 Copynumber: 23.4 Consensus size: 7
70135129 CTTAAATACA
70135139 AAATCCT
1 AAATCCT
70135146 AAATCCT
1 AAATCCT
*
70135153 AAAACTCT
1 AAATC-CT
70135161 AAA-CCTT
1 AAATCC-T
*
70135168 AAACCCT
1 AAATCCT
70135175 AAA-CCT
1 AAATCCT
70135181 AAATCACT
1 AAATC-CT
*
70135189 AAACCCT
1 AAATCCT
* *
70135196 TAAGCCTTT
1 AAATCC--T
* *
70135205 AAATACA
1 AAATCCT
70135212 AAATCCT
1 AAATCCT
70135219 AAATCCT
1 AAATCCT
70135226 AAATCCT
1 AAATCCT
70135233 AAATCCT
1 AAATCCT
70135240 AAATCCT
1 AAATCCT
*
70135247 AAA-ACT
1 AAATCCT
*
70135253 ATAAACCTT
1 A-AATCC-T
*
70135262 AAACCCT
1 AAATCCT
* *
70135269 AAAGCCC
1 AAATCCT
*
70135276 AAACCCT
1 AAATCCT
70135283 AAATCCT
1 AAATCCT
70135290 AAA-CCAT
1 AAATCC-T
*
70135297 AAACCCT
1 AAATCCT
70135304 AAA
1 AAA
70135307 CTATAGACAT
Statistics
Matches: 131, Mismatches: 18, Indels: 24
0.76 0.10 0.14
Matches are distributed among these distances:
6 12 0.09
7 93 0.71
8 20 0.15
9 6 0.05
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.23
Consensus pattern (7 bp):
AAATCCT
Found at i:70135265 original size:73 final size:73
Alignment explanation
Indices: 70135121--70135275 Score: 199
Period size: 73 Copynumber: 2.1 Consensus size: 73
70135111 TAAACAGTCA
* * *
70135121 CTTAAACCCTTAAATACAAAATCCTAAATCCTAAAACTCTAAACCTTAAACCCTAAACCTAAATC
1 CTTAAGCCCTTAAATACAAAATCCTAAATCCTAAAACTCTAAACCTTAAACCCTAAAACTAAAAC
70135186 ACTAAACC
66 ACTAAACC
* * *
70135194 CTTAAGCCTTTAAATACAAAATCCTAAATCCTAAATC-CTAAATCC-TAAATCCTAAAACTATAA
1 CTTAAGCCCTTAAATACAAAATCCTAAATCCTAAAACTCTAAA-CCTTAAACCCTAAAACTA-AA
70135257 AC-CTTAAACC
64 ACAC-TAAACC
*
70135267 CTAAAGCCC
1 CTTAAGCCC
70135276 AAACCCTAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
72 19 0.27
73 52 0.73
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (73 bp):
CTTAAGCCCTTAAATACAAAATCCTAAATCCTAAAACTCTAAACCTTAAACCCTAAAACTAAAAC
ACTAAACC
Found at i:70135443 original size:21 final size:22
Alignment explanation
Indices: 70135405--70135460 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
70135395 ATACAAACTC
*
70135405 TAAACCCTAAACTTTAAACC-T
1 TAAACCCTAAACTCTAAACCAT
70135426 TAAACCCTAAA-TCCTAAACCAT
1 TAAACCCTAAACT-CTAAACCAT
*
70135448 AAAACCCTAAACT
1 TAAACCCTAAACT
70135461 ATAGAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 17 0.57
22 11 0.37
23 1 0.03
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.23
Consensus pattern (22 bp):
TAAACCCTAAACTCTAAACCAT
Found at i:70135458 original size:8 final size:7
Alignment explanation
Indices: 70135399--70135459 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
70135389 CATTAAATAC
*
70135399 AAACTCT
1 AAACCCT
70135406 AAACCCT
1 AAACCCT
**
70135413 AAACTTT
1 AAACCCT
*
70135420 AAACCTT
1 AAACCCT
70135427 AAACCCT
1 AAACCCT
*
70135434 AAATCCT
1 AAACCCT
*
70135441 AAACCAT
1 AAACCCT
70135448 AAAACCCT
1 -AAACCCT
70135456 AAAC
1 AAAC
70135460 TATAGAAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
AAACCCT
Found at i:70137731 original size:47 final size:48
Alignment explanation
Indices: 70137657--70137833 Score: 184
Period size: 49 Copynumber: 3.6 Consensus size: 48
70137647 GTATAATGCC
70137657 GATGCCATGTCCCAGACATGG-CTTTACACTGGCTCATC-CAT-CAAGTT
1 GATGCCATGTCCCAGACATGGTC-TTACACTGGCTCATCACATAC-AGTT
* * * * *
70137704 AATGCCATGTCTCAGACATGGTCTTACACTGGCT-ATCAAAATAGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-ACATACA-GTT
* * *
70137753 GACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCGTGT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATA-CAGT-T
70137802 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 -GATGCCATGTCCCAGACATGGTCTTACACTG
70137834 ACACATCTCG
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
46 3 0.03
47 30 0.28
48 9 0.08
49 35 0.33
50 29 0.27
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACATACAGTT
Found at i:70137886 original size:46 final size:47
Alignment explanation
Indices: 70137758--70137972 Score: 203
Period size: 46 Copynumber: 4.6 Consensus size: 47
70137748 AGGCTGACGC
* * *
70137758 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GTCGATG
1 CATGTCCCAGACATGGTCTTACACTAGGT-T-ACATCT-CGTAGCCGATG
**
70137807 CCATGTCCCAGACATGGTCTTACACT--GACACATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGGTTACATCTCGTAGCCGATG
* *
70137853 CATGTCCTAGACGT-GTCTTACACTAGGTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGGTTACATCTCGTA-GCCGATG
** * *
70137899 CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAG-GTTACATCTCGTA-GCCGATG
70137945 CCATGTCCCAGACATGGTCTTACACTAG
1 -CATGTCCCAGACATGGTCTTACACTAG
70137973 CTCACAATAA
Statistics
Matches: 142, Mismatches: 15, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 64 0.45
47 15 0.11
48 12 0.08
50 25 0.18
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTAGGTTACATCTCGTAGCCGATG
Found at i:70139139 original size:22 final size:22
Alignment explanation
Indices: 70139111--70139153 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
70139101 TATTACCATG
70139111 TAATGTTTTAATCAAAAAGTTT
1 TAATGTTTTAATCAAAAAGTTT
70139133 TAATGTTTTAATCAAAAAGTT
1 TAATGTTTTAATCAAAAAGTT
70139154 AATAATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (22 bp):
TAATGTTTTAATCAAAAAGTTT
Found at i:70139164 original size:21 final size:21
Alignment explanation
Indices: 70139118--70139164 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
70139108 ATGTAATGTT
* *
70139118 TTAATCAAAAAGTTTTAATGTT
1 TTAATCAAAAAG-TTTAATATA
70139140 TTAATCAAAAAG-TTAATAATA
1 TTAATCAAAAAGTTTAAT-ATA
70139161 TTAA
1 TTAA
70139165 CTATTTGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 5 0.23
22 12 0.55
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.40
Consensus pattern (21 bp):
TTAATCAAAAAGTTTAATATA
Found at i:70139615 original size:113 final size:114
Alignment explanation
Indices: 70139398--70139727 Score: 317
Period size: 113 Copynumber: 2.9 Consensus size: 114
70139388 AGCCCATTTG
* * ** * * *
70139398 TAGCTTTGTTATTAGTGGCGCTTTTTAAAAAACGTTGCTAAAGGTATGTATTACGGGCGTTTACA
1 TAGCCTTGTTATTAGTGGCGC-TTTT-ATAAACGTCACAAAAGGTATGAATTACCGGCGTTTACA
* * *
70139463 CCGAAAATGCCACAAAAAAACTATTAAGAGATTGTAAAACGGCGTCGTTTA
64 CCGAAAATGCCACAAAAAAACTATTAACAGATTGCAAAACGGCATCGTTTA
* * *
70139514 TAGCCTTGTTATTAGTGGCGCTTTTATAAA-GTCACAAAAGGTGTGAATTGCCGGCGTTTGCACC
1 TAGCCTTGTTATTAGTGGCGCTTTTATAAACGTCACAAAAGGTATGAATTACCGGCGTTTACACC
* * * *
70139578 AGAAAATGCCAC-AAATATCTTTTAACAGATTGCAAAACGGCATCGTTTG
66 -GAAAATGCCACAAAAAAACTATTAACAGATTGCAAAACGGCATCGTTTA
* ** * * * * * *
70139627 TAGCCTTGTTATTAGTGGCGCTTTATAAAAACACCGCAGAAGATATGAATTACCGTCGTTTTCAT
1 TAGCCTTGTTATTAGTGGCGCTTT-TATAAACGTCACAAAAGGTATGAATTACCGGCGTTTACAC
** * * *
70139692 AAAAAATGCCAC-AAACATCTATTAATAGATTG-AAAA
65 CGAAAATGCCACAAAAAAACTATTAACAGATTGCAAAA
70139728 TAGTGCCGTT
Statistics
Matches: 178, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
113 84 0.47
114 47 0.26
115 27 0.15
116 20 0.11
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (114 bp):
TAGCCTTGTTATTAGTGGCGCTTTTATAAACGTCACAAAAGGTATGAATTACCGGCGTTTACACC
GAAAATGCCACAAAAAAACTATTAACAGATTGCAAAACGGCATCGTTTA
Found at i:70149569 original size:46 final size:46
Alignment explanation
Indices: 70149502--70149671 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
70149492 TGTAACCCGC
*
70149502 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
70149548 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACG--T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTT-CGCAT
* * * * *
70149598 -C-TCA-CGAACTTGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
70149641 CCATAAGTGAACTCGGACTCAAATCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
70149672 TTCAGATGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 22
0.73 0.10 0.16
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 1 0.01
44 2 0.02
45 2 0.02
46 54 0.55
47 25 0.25
48 3 0.03
49 2 0.02
50 1 0.01
51 3 0.03
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:70149627 original size:93 final size:93
Alignment explanation
Indices: 70149510--70149681 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
70149500 GCCCATAAGT
* * * *
70149510 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
*
70149575 CAAGTTCGGATGCCTAGTTACGTCTCAC
66 CAAGTTCAGATGCCTAGTTACGTCTCAC
*
70149603 GAACTTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
*
70149668 CGAGTTCAGATGCC
66 CAAGTTCAGATGCC
70149682 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAATCAA
CAAGTTCAGATGCCTAGTTACGTCTCAC
Found at i:70151250 original size:14 final size:14
Alignment explanation
Indices: 70151233--70151271 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
70151223 TTAAAATAAG
70151233 AATTAAGAACATAT
1 AATTAAGAACATAT
70151247 AATTAAGAACATAT
1 AATTAAGAACATAT
70151261 AATTAAGAACA
1 AATTAAGAACA
70151272 AATCAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.26
Consensus pattern (14 bp):
AATTAAGAACATAT
Found at i:70162066 original size:47 final size:47
Alignment explanation
Indices: 70161997--70162329 Score: 533
Period size: 47 Copynumber: 7.1 Consensus size: 47
70161987 GAAATGATAG
*
70161997 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70162044 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
70162091 GATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
1 TA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70162139 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
70162186 T-AGGCATAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70162232 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
70162279 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
70162326 TAAG
1 TAAG
70162330 TCCCGAAGGG
Statistics
Matches: 267, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
46 45 0.17
47 176 0.66
48 46 0.17
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:70162206 original size:93 final size:93
Alignment explanation
Indices: 70161999--70162329 Score: 520
Period size: 93 Copynumber: 3.5 Consensus size: 93
70161989 AATGATAGTA
70161999 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGA-GATAAGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-ATGATAAGGCCTAATGGCCGATG
*
70162063 TGATGAATGTGAAAGTGTATATATATGAGAT
65 TGATGAATGTGAAAGTG--TATATATGTGAT
70162094 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGT
70162159 GATGAATGTGAAAGTGTATATATGTGAT
66 GATGAATGTGAAAGTGTATATATGTGAT
* *
70162187 AGGCATAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGT
*
70162252 GATGAATGTGAAAGTGTATATATGTGAC
66 GATGAATGTGAAAGTGTATATATGTGAT
* * * * * * *
70162280 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 A-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAG
70162330 TCCCGAAGGG
Statistics
Matches: 223, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
93 102 0.46
94 42 0.19
95 79 0.35
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (93 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGAT
Found at i:70162503 original size:37 final size:37
Alignment explanation
Indices: 70162447--70162525 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70162437 CCGAGCTCTA
* * *
70162447 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70162484 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70162521 AAGAC
1 AAGAC
70162526 TTGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70164512 original size:39 final size:39
Alignment explanation
Indices: 70164401--70164565 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 39
70164391 GGACTAAGAT
*
70164401 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGAT-
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGG-GTAAG-TC
*
70164441 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTAAGTC
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGGGTAAGTC
* *
70164480 CCGAAGGCATTTGT-CGAGTTACTATAAACCGGGCTATGTC
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGG-TAAGTC
* * * * *
70164520 CCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATT
1 CCGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTAAGTC
70164559 CCGAAGG
1 CCGAAGG
70164566 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
38 11 0.10
39 35 0.32
40 56 0.51
41 7 0.06
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGGTAAGTC
Found at i:70164524 original size:79 final size:81
Alignment explanation
Indices: 70164349--70164532 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
70164339 TGAATGATGT
* * *
70164349 CCGGGCTAAGTCCTGAAGGC-TTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
70164413 GTACGAGTTACTAAAT
66 GTACGAGTTACTAAAA
* * * *
70164429 CCGGACTAAGAT-CCGAAGGCATTTGTGCGA-GTTACTAAATCCGG-GTAAG-TCCCGAAGGCAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
70164490 TTGT-CGAGTTACTATAAA
64 TTGTACGAGTTACTA-AAA
*
70164508 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70164533 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
78 12 0.13
79 41 0.46
80 27 0.30
81 9 0.10
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAAA
Found at i:70164532 original size:40 final size:40
Alignment explanation
Indices: 70164348--70164539 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
70164338 TTGAATGATG
* * * * * *
70164348 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGA-GTTACTAAA
*
70164388 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
70164428 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
70164468 TCCGGG-TAAGTCCCGAAGGCATTTGT-CGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* * *
70164507 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
70164540 AGCTATATCC
Statistics
Matches: 134, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
38 11 0.08
39 25 0.19
40 85 0.63
41 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:70164539 original size:79 final size:79
Alignment explanation
Indices: 70164401--70164565 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70164391 GGACTAAGAT
* **
70164401 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTACGAGTTACTAAAACCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
70164465 AAATCCGGGTAAGTC
65 AAATCCGGGTAAATC
* *
70164480 CCGAAGGCATTTGT-CGAGTTACTATAAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTACGAGTTACTA-AAACCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* * *
70164543 TATATCCGGTTAAATT
64 TAAATCCGGGTAAATC
70164559 CCGAAGG
1 CCGAAGG
70164566 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 13 0.18
79 61 0.82
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAAAACCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGGTAAATC
Found at i:70172505 original size:40 final size:40
Alignment explanation
Indices: 70172274--70172498 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
70172264 TTGAATGATG
* * * *
70172274 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
70172314 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70172353 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70172393 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70172433 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70172474 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70172499 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 37 0.22
40 120 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70172520 original size:119 final size:119
Alignment explanation
Indices: 70172274--70172531 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
70172264 TTGAATGATG
* * *
70172274 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
70172339 GTACGAGTTACTAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTACGAGTTACTAAACCAGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* * **
70172393 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
70172456 TTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTACGAGTTACTA-AACCAGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTAAA
* *
70172513 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70172532 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 1 0.01
119 76 0.65
120 40 0.34
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAACCAGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Done.