Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 216 of 290
Found at i:70176247 original size:18 final size:18
Alignment explanation
Indices: 70176216--70176252 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70176206 CGATTTTCTA
*
70176216 TAGCCGAACCACTCTTGC
1 TAGCCAAACCACTCTTGC
*
70176234 TAGCCAAACTACTCTTGC
1 TAGCCAAACCACTCTTGC
70176252 T
1 T
70176253 TTCTTCTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (18 bp):
TAGCCAAACCACTCTTGC
Found at i:70177981 original size:22 final size:23
Alignment explanation
Indices: 70177942--70177984 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
70177932 GAAATCCTGC
*
70177942 CCATCCATCCTCTACACTCTACT
1 CCATCCAGCCTCTACACTCTACT
70177965 CCATCCAGCC-CTACACTCTA
1 CCATCCAGCCTCTACACTCTA
70177985 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.49, G:0.02, T:0.26
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCTACT
Found at i:70180906 original size:5 final size:5
Alignment explanation
Indices: 70180896--70180925 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
70180886 TTAGTTAATC
*
70180896 TTTTA TTTTA TTTTA TTTTA TTTTT TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
70180926 CATTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:70181020 original size:33 final size:34
Alignment explanation
Indices: 70180983--70181056 Score: 87
Period size: 37 Copynumber: 2.1 Consensus size: 34
70180973 GGAACATTAA
70180983 TAGATCATGTTTTTAA-CTTATGCTGTTTATCCT
1 TAGATCATGTTTTTAATCTTATGCTGTTTATCCT
* * *
70181016 TAGATTATTTTTTTAATTTGCTTATGTTGTTTATCCT
1 TAGATCATGTTTTTAA--T-CTTATGCTGTTTATCCT
70181053 TAGA
1 TAGA
70181057 GACTTGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 14 0.41
37 20 0.59
ACGTcount: A:0.22, C:0.11, G:0.12, T:0.55
Consensus pattern (34 bp):
TAGATCATGTTTTTAATCTTATGCTGTTTATCCT
Found at i:70182023 original size:29 final size:29
Alignment explanation
Indices: 70181986--70182075 Score: 171
Period size: 29 Copynumber: 3.1 Consensus size: 29
70181976 TAGTTTGGAT
*
70181986 TAATGTATTTAAATATTATTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
70182015 TAATTTATTTAAATATTATTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
70182044 TAATTTATTTAAATATTATTTAATTAAAA
1 TAATTTATTTAAATATTATTTAATTAAAA
70182073 TAA
1 TAA
70182076 AATTTTTCCA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (29 bp):
TAATTTATTTAAATATTATTTAATTAAAA
Found at i:70182041 original size:15 final size:15
Alignment explanation
Indices: 70181994--70182071 Score: 106
Period size: 15 Copynumber: 5.3 Consensus size: 15
70181984 ATTAATGTAT
70181994 TTAAATATTATTTAA
1 TTAAATATTATTTAA
* *
70182009 TTAAA-ATAATTTAT
1 TTAAATATTATTTAA
70182023 TTAAATATTATTTAA
1 TTAAATATTATTTAA
* *
70182038 TTAAA-ATAATTTAT
1 TTAAATATTATTTAA
70182052 TTAAATATTATTTAA
1 TTAAATATTATTTAA
70182067 TTAAA
1 TTAAA
70182072 ATAAAATTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
14 24 0.45
15 29 0.55
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAAATATTATTTAA
Found at i:70182243 original size:29 final size:29
Alignment explanation
Indices: 70182209--70182269 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
70182199 TAATTTGGAT
70182209 TAATTTACTTAAATATTATTTAACTAAAA
1 TAATTTACTTAAATATTATTTAACTAAAA
* * *
70182238 TAATTTATTTATATATTATTTAATTAAAA
1 TAATTTACTTAAATATTATTTAACTAAAA
70182267 TAA
1 TAA
70182270 ATTTTTTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TAATTTACTTAAATATTATTTAACTAAAA
Found at i:70182325 original size:195 final size:194
Alignment explanation
Indices: 70182015--70182387 Score: 647
Period size: 195 Copynumber: 1.9 Consensus size: 194
70182005 TTAATTAAAA
* *
70182015 TAATTTATTTAAATATTATTTAATTAAAATAATTTATTTAAATATTATTTAATTAAAATAAAATT
1 TAATTTACTTAAATATTATTTAACTAAAATAATTTATTTAAATATTATTTAATTAAAATAAAATT
*
70182080 TTTCCATGTGATTTTCCACATAATCAAATTTTATTTTTATTATTTCTTTTTCATGGAACAAAGTT
66 TTTCCATGTGATTTTCCACATAATCAAATTTTATTTTTATTATTTCTTTTTCATAGAACAAAGTT
* *
70182145 GACATTTCATCTTATACGGTTTTCAACTTTTTATAAACAATTTTTTAAATTACATAATTTGGAT
131 GACATTTCATCTTATACGCTTTTCAACTTTTTATAAACAAATTTTTAAATTACATAATTTGGAT
* *
70182209 TAATTTACTTAAATATTATTTAACTAAAATAATTTATTTATATATTATTTAATTAAAATAAATTT
1 TAATTTACTTAAATATTATTTAACTAAAATAATTTATTTAAATATTATTTAATTAAAATAAA-AT
**
70182274 TTTTCCATGTGATTTTCCACATCGTCAAATTTTATTTTTATTATTTCTTTTTCATAGAACAAAGT
65 TTTTCCATGTGATTTTCCACATAATCAAATTTTATTTTTATTATTTCTTTTTCATAGAACAAAGT
*
70182339 TGACATTTCATCTTATACGCTTTTCAACTTTTTATACACAAATTTTTAA
130 TGACATTTCATCTTATACGCTTTTCAACTTTTTATAAACAAATTTTTAA
70182388 TAACTTACAT
Statistics
Matches: 168, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
194 59 0.35
195 109 0.65
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.50
Consensus pattern (194 bp):
TAATTTACTTAAATATTATTTAACTAAAATAATTTATTTAAATATTATTTAATTAAAATAAAATT
TTTCCATGTGATTTTCCACATAATCAAATTTTATTTTTATTATTTCTTTTTCATAGAACAAAGTT
GACATTTCATCTTATACGCTTTTCAACTTTTTATAAACAAATTTTTAAATTACATAATTTGGAT
Found at i:70182401 original size:9 final size:9
Alignment explanation
Indices: 70182387--70182474 Score: 74
Period size: 9 Copynumber: 10.0 Consensus size: 9
70182377 CAAATTTTTA
70182387 ATAACTTAC
1 ATAACTTAC
70182396 ATAACTTAC
1 ATAACTTAC
*
70182405 AAAACTTAC
1 ATAACTTAC
*
70182414 GTAA--TAC
1 ATAACTTAC
* *
70182421 ATAA-ATAT
1 ATAACTTAC
* *
70182429 ATATCATATC
1 ATAACTTA-C
70182439 ATAACTTAC
1 ATAACTTAC
70182448 ATAACTTAC
1 ATAACTTAC
*
70182457 AAAACTTAC
1 ATAACTTAC
*
70182466 TTAACTTAC
1 ATAACTTAC
70182475 GTAATACATA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
7 6 0.09
8 5 0.08
9 47 0.73
10 6 0.09
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:70187827 original size:14 final size:14
Alignment explanation
Indices: 70187803--70187837 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
70187793 TTAAATATTT
70187803 ATAAT-GTTTAATC
1 ATAATGGTTTAATC
*
70187816 ATAATGGTTTAATT
1 ATAATGGTTTAATC
70187830 ATAATGGT
1 ATAATGGT
70187838 ATATTCATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 5 0.25
14 15 0.75
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (14 bp):
ATAATGGTTTAATC
Found at i:70188639 original size:85 final size:86
Alignment explanation
Indices: 70188540--70188750 Score: 268
Period size: 85 Copynumber: 2.5 Consensus size: 86
70188530 AAATTAGTGG
* *
70188540 GTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTATTTAGCGG-TGTTTGTATG-AAAACGCCGCT
1 GTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCT-TTTGTATGAAAAACGCCACT
* *
70188603 AAATGTGACA-TTCTTTAGCGGC
65 AAAGGTGA-AGTTCTGTAGCGGC
* *
70188625 GTTTTTGAGGAAAGTGCCG-TAAAGGTCATGTTCTTTAGCGGCTTTTGTATGAAAAATGCCACTA
1 GTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCTTTTGTATGAAAAACGCCACTA
* * *
70188689 TAGGTTAAGTTCTGTAGTGGC
66 AAGGTGAAGTTCTGTAGCGGC
** *
70188710 GTTTTTGAGAAAAGCACCGCTAAAGGTCACGTTCTTTAGCG
1 GTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCG
70188751 ACATTTTTGA
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
84 30 0.28
85 59 0.54
86 20 0.18
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (86 bp):
GTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCTTTTGTATGAAAAACGCCACTA
AAGGTGAAGTTCTGTAGCGGC
Found at i:70188659 original size:42 final size:43
Alignment explanation
Indices: 70188540--70188766 Score: 203
Period size: 43 Copynumber: 5.3 Consensus size: 43
70188530 AAATTAGTGG
* * *
70188540 GTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTATTTAGCGGT
1 GTTTTTGAGAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGC
* * * * *
70188583 GTTTGT-ATGAAAA-CGCCGCTAAATGTGACATTCTTTAGCGGC
1 GTTTTTGA-GAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGC
* *
70188625 GTTTTTGAGGAAAGTGCCG-TAAAGGTCATGTTCTTTAGCGGC
1 GTTTTTGAGAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGC
* * * * * * *
70188667 --TTTTGTATGAAAAATGCCACTATAGGTTAAGTTCTGTAGTGGC
1 GTTTTTG-A-GAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGC
** *
70188710 GTTTTTGAGAAAAGCACCGCTAAAGGTCACGTTCTTTAGCGAC
1 GTTTTTGAGAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGC
*
70188753 ATTTTTGAGAAAAG
1 GTTTTTGAGAAAAG
70188767 AGGCGTTTGT
Statistics
Matches: 142, Mismatches: 34, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
40 5 0.04
41 1 0.01
42 59 0.42
43 71 0.50
44 1 0.01
45 5 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
GTTTTTGAGAAAAGTGCCGCTAAAGGTCACGTTCTTTAGCGGC
Found at i:70188840 original size:43 final size:43
Alignment explanation
Indices: 70188771--70188940 Score: 182
Period size: 43 Copynumber: 4.0 Consensus size: 43
70188761 GAAAAGAGGC
* * *
70188771 GTTTGTGTGAAAAGCACCACTGAAGGTCATATTCTTTAGTGGT
1 GTTTGTATGAAAAGCACCACTAAAGGTCACATTCTTTAGTGGT
* * ** ** *
70188814 ATTGGTATGAAAAGCACTGCTAAAGGTCATGTTCTTTAGTGGC
1 GTTTGTATGAAAAGCACCACTAAAGGTCACATTCTTTAGTGGT
*
70188857 GTTTGTATGAAAAG-AGCCACTAAAGGTCACATTCTTTAGCGGT
1 GTTTGTATGAAAAGCA-CCACTAAAGGTCACATTCTTTAGTGGT
** *
70188900 GTTTGTATGAAAAGTGCCGCTATAA-GTCACATTCTTTAGTG
1 GTTTGTATGAAAAGCACCACTA-AAGGTCACATTCTTTAGTG
70188941 ACGCTTTTTC
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 102 0.97
44 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
GTTTGTATGAAAAGCACCACTAAAGGTCACATTCTTTAGTGGT
Found at i:70188935 original size:86 final size:86
Alignment explanation
Indices: 70188768--70188940 Score: 215
Period size: 86 Copynumber: 2.0 Consensus size: 86
70188758 TGAGAAAAGA
* * * * *
70188768 GGCGTTTGTGTGAAAAGCACCACTGAAGGTCATATTCTTTAGTGGTATTGGTATGAAAAGCACTG
1 GGCGTTTGTATGAAAAGCACCACTAAAGGTCACATTCTTTAGCGGTATTGGTATGAAAAGCACCG
**
70188833 CTAAAGGTCATGTTCTTTAGT
66 CTAAAGGTCACATTCTTTAGT
* * **
70188854 GGCGTTTGTATGAAAAG-AGCCACTAAAGGTCACATTCTTTAGCGGTGTTTGTATGAAAAGTGCC
1 GGCGTTTGTATGAAAAGCA-CCACTAAAGGTCACATTCTTTAGCGGTATTGGTATGAAAAGCACC
70188918 GCTATAA-GTCACATTCTTTAGT
65 GCTA-AAGGTCACATTCTTTAGT
70188940 G
1 G
70188941 ACGCTTTTTC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
85 1 0.01
86 71 0.96
87 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (86 bp):
GGCGTTTGTATGAAAAGCACCACTAAAGGTCACATTCTTTAGCGGTATTGGTATGAAAAGCACCG
CTAAAGGTCACATTCTTTAGT
Found at i:70189121 original size:21 final size:21
Alignment explanation
Indices: 70189076--70189123 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
70189066 TATAAATACT
**
70189076 GCTAAAGGCCAAAAAAAGGTT
1 GCTAAAGGCCAAAAAAAGGCC
*
70189097 GCTAAAGGCCAAAAAGAGGCC
1 GCTAAAGGCCAAAAAAAGGCC
70189118 GCTAAA
1 GCTAAA
70189124 AACCTGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.46, C:0.19, G:0.25, T:0.10
Consensus pattern (21 bp):
GCTAAAGGCCAAAAAAAGGCC
Found at i:70190764 original size:28 final size:29
Alignment explanation
Indices: 70190654--70190766 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 29
70190644 GTGAGCATGA
* * *
70190654 ATATGAATGTGA-CTGGGCCGAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
70190682 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
70190711 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
70190740 ATATGAATATGA-TTGGGCTTAATGGGC
1 ATATGAATGTGATTTGGGCCTAATGGGC
70190767 TAGATACATG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:70193642 original size:26 final size:26
Alignment explanation
Indices: 70193606--70193681 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
70193596 ATTGACTTAG
70193606 AAATTTTGTGTCACGATCGGAGACAA
1 AAATTTTGTGTCACGATCGGAGACAA
*
70193632 AAATTTTGTGTCACGATCGGAGATAA
1 AAATTTTGTGTCACGATCGGAGACAA
70193658 AAATTTTGTGTCACGATCGGAGAC
1 AAATTTTGTGTCACGATCGGAGAC
70193682 GATAGTACGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
AAATTTTGTGTCACGATCGGAGACAA
Found at i:70195805 original size:14 final size:14
Alignment explanation
Indices: 70195772--70195814 Score: 61
Period size: 14 Copynumber: 3.0 Consensus size: 14
70195762 ACTTTTTCCA
70195772 CTCTTTTTCTTTT-
1 CTCTTTTTCTTTTG
70195785 CATTCTTTTTCTTTTG
1 C--TCTTTTTCTTTTG
70195801 CTCTTTTTCTTTTG
1 CTCTTTTTCTTTTG
70195815 ATCTCTCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
15 12 0.44
16 1 0.04
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.72
Consensus pattern (14 bp):
CTCTTTTTCTTTTG
Found at i:70203244 original size:46 final size:46
Alignment explanation
Indices: 70203194--70203369 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
70203184 TGGTTGAGCA
70203194 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70203240 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70203285 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70203333 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70203370 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70203350 original size:93 final size:93
Alignment explanation
Indices: 70203191--70203361 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70203181 GGATGGTTGA
* *
70203191 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70203256 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
70203284 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70203349 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70203362 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70208644 original size:42 final size:42
Alignment explanation
Indices: 70208585--70208706 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 42
70208575 TTAGGGTTAC
70208585 TGAGATTACGTGTAAGACCATACCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATACCTGGGATATGGCATCGATA
* * *
70208627 TGAGATTTCGTGAAAGACCATAGCC-GGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATA-CCTGGGATA-TGGCATCGATA
* * *
70208670 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATACCTGGGATATGGCAT
70208707 TACGGTACTG
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATACCTGGGATATGGCATCGATA
Found at i:70214054 original size:22 final size:19
Alignment explanation
Indices: 70214037--70214073 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
70214027 GAACCTAGTG
70214037 TCTATTAAAAATTTACCTA
1 TCTATTAAAAATTTACCTA
*
70214056 TCTGTTAAAAATTTACCT
1 TCTATTAAAAATTTACCT
70214074 GTTTAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (19 bp):
TCTATTAAAAATTTACCTA
Found at i:70214911 original size:21 final size:22
Alignment explanation
Indices: 70214885--70214927 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
70214875 TACCAAAGAT
70214885 AGCTTTTAGAACTAGGT-TGGA
1 AGCTTTTAGAACTAGGTATGGA
70214906 AGCTTTTAGAACTAGGTATGGA
1 AGCTTTTAGAACTAGGTATGGA
70214928 CATTATAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (22 bp):
AGCTTTTAGAACTAGGTATGGA
Found at i:70219747 original size:28 final size:28
Alignment explanation
Indices: 70219690--70219752 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
70219680 TGGGAAGTAG
* * *
70219690 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATACGAACGAGA
* *
70219718 TTGGGCCTGATGGGTCATGCGAACGAGA
1 TTGGGCCTGATGGGCCATACGAACGAGA
70219746 TTGGGCC
1 TTGGGCC
70219753 CTAAGGGGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATACGAACGAGA
Found at i:70220110 original size:27 final size:27
Alignment explanation
Indices: 70220070--70220382 Score: 290
Period size: 27 Copynumber: 11.6 Consensus size: 27
70220060 TAATAAAGAG
* * * *
70220070 AAATTATTTAAATACCCCCGGTTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70220097 AATTTACTGAAATACCCTCGGTTTGCA
1 AAATTACTGAAATACCCTCGATTTGTA
*
70220124 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
70220151 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
70220178 AAATTACCGAAATACCCTC-ACTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * ** *
70220205 AAATTACCGAAATA-CTTTTAGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
70220232 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
70220259 AATTTA-TCGAAATACCTTTGTTTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
** *
70220286 AAATTACCAAAATACCCACGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70220313 AAATTACTAAAATATCCTCGATTTTTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
70220340 AAATTACCGAAGTACCCCCGAATTTGTA
1 AAATTACTGAAATACCCTCG-ATTTGTA
*
70220368 AAATTATTGAAATAC
1 AAATTACTGAAATAC
70220383 TCTTATAGTG
Statistics
Matches: 233, Mismatches: 47, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.02
27 208 0.89
28 21 0.09
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:70220259 original size:108 final size:108
Alignment explanation
Indices: 70220079--70220319 Score: 322
Period size: 108 Copynumber: 2.2 Consensus size: 108
70220069 GAAATTATTT
* * * * ** **
70220079 AAATACCCCCGGTTTGTAAATTTACTGAAATACCCTCGGTTTGCAAAATTACTGAAACACCCTCG
1 AAATACCCACGATTTGTAAAATTACCGAAATACTTTTAGTTTGCAAAATTACTGAAACACCCTCG
*
70220144 ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCG
66 ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
*
70220187 AAATACCCTC-ACTTTGTAAAATTACCGAAATACTTTTAGTTTGCAAAATTACTGAAACACCCTC
1 AAATACCCACGA-TTTGTAAAATTACCGAAATACTTTTAGTTTGCAAAATTACTGAAACACCCTC
* * * ***
70220251 GATTTGTAAATTTATCGAAATACCTTTGTTTTGTAAAATTACCA
65 GATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
70220295 AAATACCCACGATTTGTAAAATTAC
1 AAATACCCACGATTTGTAAAATTAC
70220320 TAAAATATCC
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
108 114 0.99
109 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (108 bp):
AAATACCCACGATTTGTAAAATTACCGAAATACTTTTAGTTTGCAAAATTACTGAAACACCCTCG
ATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
Found at i:70227938 original size:24 final size:24
Alignment explanation
Indices: 70227910--70228045 Score: 173
Period size: 24 Copynumber: 5.7 Consensus size: 24
70227900 GATTCAACTC
* *
70227910 CGCACACATAGTGCCAAATAATTA
1 CGCACACATAGTGCCAAACAAATA
* * *
70227934 CGCACACGTAGTGCCATACATATA
1 CGCACACATAGTGCCAAACAAATA
*
70227958 CGCACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCAAACAAATA
* *
70227982 CGAACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCAAACAAATA
* *
70228006 CGCACACATAGTGCCATACCAATA
1 CGCACACATAGTGCCAAACAAATA
*
70228030 CGCGCACATAGTGCCA
1 CGCACACATAGTGCCA
70228046 CTCAAATCCG
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 101 1.00
ACGTcount: A:0.38, C:0.29, G:0.15, T:0.18
Consensus pattern (24 bp):
CGCACACATAGTGCCAAACAAATA
Found at i:70228052 original size:48 final size:48
Alignment explanation
Indices: 70227910--70228045 Score: 200
Period size: 48 Copynumber: 2.8 Consensus size: 48
70227900 GATTCAACTC
* * * * *
70227910 CGCACACATAGTGCCAAATAATTACGCACACGTAGTGCCATACATATA
1 CGCACACATAGTGCCATACAAATACGCACACATAGTGCCATACAAATA
*
70227958 CGCACACATAGTGCCATACAAATACGAACACATAGTGCCATACAAATA
1 CGCACACATAGTGCCATACAAATACGCACACATAGTGCCATACAAATA
* *
70228006 CGCACACATAGTGCCATACCAATACGCGCACATAGTGCCA
1 CGCACACATAGTGCCATACAAATACGCACACATAGTGCCA
70228046 CTCAAATCCG
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.38, C:0.29, G:0.15, T:0.18
Consensus pattern (48 bp):
CGCACACATAGTGCCATACAAATACGCACACATAGTGCCATACAAATA
Found at i:70230930 original size:28 final size:28
Alignment explanation
Indices: 70230890--70230973 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
70230880 AAGTAGTTGA
*
70230890 GCCTGATTGGCCATATGAATATGATTGG
1 GCCTGATGGGCCATATGAATATGATTGG
* *
70230918 GCCTGATGGGCCATATGAATGTGATTAG
1 GCCTGATGGGCCATATGAATATGATTGG
* *
70230946 GCCTGATGGGTCATGTGAACTA-GATTGG
1 GCCTGATGGGCCATATGAA-TATGATTGG
70230974 TCCCTAAGGG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 47 0.98
29 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (28 bp):
GCCTGATGGGCCATATGAATATGATTGG
Found at i:70231481 original size:107 final size:107
Alignment explanation
Indices: 70231294--70231526 Score: 360
Period size: 107 Copynumber: 2.2 Consensus size: 107
70231284 TAATAAAGAG
* * *
70231294 AAATTACCGAAATACCCCCAGTTTGTAAAATTACCGAAATACCCTTGGTTTGTAAAATTACTGAA
1 AAATTATCGAAATA-CCCTAGTTTGTAAAATTACCGAAATACCCTTGGTTTGCAAAATTACTGAA
* *
70231359 ACATCCTCGATTTGTAAAATTATCGAAATACGC-TCAATTTGTA
65 ACACCCTCGATTTGTAAAATTACCGAAATAC-CTTCAATTTGTA
* * *
70231402 AAATTATCGAAATACCCTAGTTTTTAAAATTATCGAAATACCCTTGGTTTGCAAAATTATTGAAA
1 AAATTATCGAAATACCCTAGTTTGTAAAATTACCGAAATACCCTTGGTTTGCAAAATTACTGAAA
*
70231467 CACCCTCGATTTGTAAAATTACCGAAATACCTTCGATTTGTA
66 CACCCTCGATTTGTAAAATTACCGAAATACCTTCAATTTGTA
70231509 AAATTATCGAAATACCCT
1 AAATTATCGAAATACCCT
70231527 CGATTAAATT
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
106 1 0.01
107 101 0.88
108 13 0.11
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (107 bp):
AAATTATCGAAATACCCTAGTTTGTAAAATTACCGAAATACCCTTGGTTTGCAAAATTACTGAAA
CACCCTCGATTTGTAAAATTACCGAAATACCTTCAATTTGTA
Found at i:70231529 original size:27 final size:27
Alignment explanation
Indices: 70231294--70231565 Score: 279
Period size: 27 Copynumber: 10.2 Consensus size: 27
70231284 TAATAAAGAG
* *
70231294 AAATTACCGAAATACCC-CCAGTTTGTA
1 AAATTATCGAAATACCCTCGA-TTTGTA
* * *
70231321 AAATTACCGAAATACCCTTGGTTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
70231348 AAATTA-CTGAAACATCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* *
70231375 AAATTATCGAAATACGCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
70231402 AAATTATCGAAATACCCTAG-TTTTTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
70231428 AAATTATCGAAATACCCTTGGTTTGCA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
70231455 AAATTATTGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
70231482 AAATTACCGAAATACCTTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
70231509 AAATTATCGAAATACCCTCGA--T-T-
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
70231532 AAATTATTGAAACACCTCCCGATTTGTA
1 AAATTATCGAAATACC-CTCGATTTGTA
70231560 AAATTA
1 AAATTA
70231566 CTAAAATACT
Statistics
Matches: 204, Mismatches: 32, Indels: 17
0.81 0.13 0.07
Matches are distributed among these distances:
23 14 0.07
24 5 0.02
25 1 0.00
26 26 0.13
27 151 0.74
28 7 0.03
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:70231554 original size:24 final size:23
Alignment explanation
Indices: 70231509--70231555 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
70231499 TCGATTTGTA
* *
70231509 AAATTATCGAAATACCCTCGATT
1 AAATTATCGAAACACCCCCGATT
*
70231532 AAATTATTGAAACACCTCCCGATT
1 AAATTATCGAAACACC-CCCGATT
70231556 TGTAAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (23 bp):
AAATTATCGAAACACCCCCGATT
Found at i:70231589 original size:78 final size:79
Alignment explanation
Indices: 70231395--70231590 Score: 195
Period size: 78 Copynumber: 2.5 Consensus size: 79
70231385 AATACGCTCA
* * * * * * * *
70231395 ATTTGTAAAATTATCGAAATACCCTAG-TTTTTAAAATTATCGAAATACCCTTGGTTTGCAAAAT
1 ATTTGTAAAATTACCAAAATACCTTCGATGTATAAAATTATCGAAATACCCTTCGATT--AAAAT
*
70231459 TATTGAAACACCCTCG
64 TATTGAAACACCCCCG
* * *
70231475 ATTTGTAAAATTACCGAAATACCTTCGATTTGTAAAATTATCGAAATACCC-TCGATT-AAATTA
1 ATTTGTAAAATTACCAAAATACCTTCGATGTATAAAATTATCGAAATACCCTTCGATTAAAATTA
70231538 TTGAAACACCTCCCG
66 TTGAAACACC-CCCG
*
70231553 ATTTGTAAAATTACTAAAATACTCTT-G-TAGTATAAAAT
1 ATTTGTAAAATTACCAAAATAC-CTTCGAT-GTATAAAAT
70231591 GACCGAATAC
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
77 17 0.17
78 31 0.31
79 3 0.03
80 28 0.28
81 22 0.22
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (79 bp):
ATTTGTAAAATTACCAAAATACCTTCGATGTATAAAATTATCGAAATACCCTTCGATTAAAATTA
TTGAAACACCCCCG
Found at i:70242652 original size:28 final size:27
Alignment explanation
Indices: 70242597--70242686 Score: 110
Period size: 28 Copynumber: 3.3 Consensus size: 27
70242587 AACATGGCTG
* *
70242597 CCAGAACAGAT-ATTGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
70242623 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
70242651 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATAATTGTGGCAGAGCCA
*
70242679 CTAGAACA
1 CCAGAACA
70242687 CTTCCTCCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
26 5 0.09
27 10 0.18
28 39 0.71
29 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:70243786 original size:17 final size:17
Alignment explanation
Indices: 70243764--70243796 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70243754 TAGGCTATGG
70243764 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
70243781 AGAAAAGAATAGATGA
1 AGAAAAGAAAAGATGA
70243797 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:70246697 original size:17 final size:17
Alignment explanation
Indices: 70246675--70246707 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
70246665 GTTTTTATGA
70246675 GAAACCCTTATAGGGAT
1 GAAACCCTTATAGGGAT
70246692 GAAACCCTTATAGGGA
1 GAAACCCTTATAGGGA
70246708 CTAATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (17 bp):
GAAACCCTTATAGGGAT
Found at i:70249052 original size:33 final size:33
Alignment explanation
Indices: 70249009--70249078 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
70248999 ACATGTTATC
* *
70249009 ACATATTGATGCCACTGTCCCAAG-CAAGGTCTT
1 ACATAATGATGCCAATGT-CCAAGACAAGGTCTT
* *
70249042 ACATAATGATGCCAATGTCCTAGACATGGTCTT
1 ACATAATGATGCCAATGTCCAAGACAAGGTCTT
70249075 ACAT
1 ACAT
70249079 GCAATCTCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 4 0.12
33 28 0.88
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (33 bp):
ACATAATGATGCCAATGTCCAAGACAAGGTCTT
Found at i:70252047 original size:48 final size:46
Alignment explanation
Indices: 70251948--70252068 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 46
70251938 GTGGATGTGT
** *
70251948 GCTAGTGTAAGACATGTTTGGGACATGGATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGGATCGGCCACAAGACGAGA
*
70251994 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTTTGGGACATGG-ATCGGCCA-CAAGACGAGA
*
70252042 GCTAGTGTAAGACATGTCTGGGACATG
1 GCTAGTGTAAGACATGTTTGGGACATG
70252069 CATTGGCCTC
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
46 12 0.18
47 32 0.48
48 23 0.34
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGGATCGGCCACAAGACGAGA
Found at i:70252093 original size:48 final size:46
Alignment explanation
Indices: 70251948--70252102 Score: 163
Period size: 48 Copynumber: 3.3 Consensus size: 46
70251938 GTGGATGTGT
* *
70251948 GCTAGTGTAAGACATGTTTGGGACATGGATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCTA-TATGAGA
* * *
70251994 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-TAAGACGAGA
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCT-ATATGAGA
* *
70252042 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGTGATATGCA-A
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTC-T-ATATG-AGA
70252090 GCTAGTGTAAGAC
1 GCTAGTGTAAGAC
70252103 CCATTTGGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
46 20 0.22
47 27 0.30
48 42 0.46
49 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCTATATGAGA
Found at i:70259433 original size:27 final size:27
Alignment explanation
Indices: 70259259--70259436 Score: 243
Period size: 27 Copynumber: 6.6 Consensus size: 27
70259249 TACCCTACAG
* *
70259259 GGGTATTTCGATAATTTTAC-ACTAC-A
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
70259285 AGGTATTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
70259312 GGGTATTTCAGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
70259339 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
70259366 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
70259393 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
70259420 GGGTATTTTAGTAATTT
1 GGGTATTTCGGTAATTT
70259437 CTCTTTATTA
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 18 0.13
27 118 0.87
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:70264487 original size:46 final size:48
Alignment explanation
Indices: 70264306--70264575 Score: 215
Period size: 46 Copynumber: 5.7 Consensus size: 48
70264296 CATCAAGTCA
* * ** * *
70264306 ATGCCATGTCCCAGACATGGTCTTACACTGACTATAAAAATC-AAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGTA-GCCG
* * * * *
70264355 ACGCCATG-CCCTAGACACGGTCTTACACTAGCTCTCACATATCCGT-GCAG
1 ATGCCATGTCCC-AGACATGGTCTTACACTGGCT-T-ACATCT-CGTAGCCG
*
70264405 ATGCCATGTCCCACG-CATGGTCTTACACTGAC--ACATCTCGTAGCCG
1 ATGCCATGTCCCA-GACATGGTCTTACACTGGCTTACATCTCGTAGCCG
*
70264451 ATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATCTCG-AGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCCG
* * *
70264497 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATA-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTC-GTAGCCG
70264543 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
70264576 CTCAAATAAC
Statistics
Matches: 182, Mismatches: 23, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
44 12 0.07
45 16 0.09
46 63 0.35
47 15 0.08
48 17 0.09
49 26 0.14
50 28 0.15
51 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCG
Found at i:70266523 original size:28 final size:28
Alignment explanation
Indices: 70266455--70266634 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
70266445 CATGAGATTG
* * * *
70266455 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70266484 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70266512 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70266540 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70266568 GCACTAAGTGTGC-AG-TTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70266594 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70266621 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70266635 GACTTAATAT
Statistics
Matches: 143, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
26 23 0.16
27 27 0.19
28 75 0.52
29 18 0.13
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70274691 original size:28 final size:28
Alignment explanation
Indices: 70274623--70274804 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
70274613 CATGAGATTG
* * * * *
70274623 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
70274652 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70274680 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70274708 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
70274736 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
70274764 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70274791 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
70274805 GACTTAATAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 17 0.12
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70279807 original size:48 final size:48
Alignment explanation
Indices: 70279702--70280071 Score: 173
Period size: 48 Copynumber: 7.8 Consensus size: 48
70279692 GTGGATGTGT
* * ** *
70279702 GCTAGTGTAAGA-CATGTCTGGGACAT-GCGTCGGCCA-CATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTAAGATAAGA
* * *
70279748 GCTATTTTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATAAGA
* * ** *
70279796 GCTAGTGTAAGA-CATGTCTGGAACAT-GCATCGGCCTCGAGATATGCAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATAAG--A
* * * *
70279844 GCTAGTGTAAGACTTAT-T-TGGGACATGGCATCGGC-TT--GACATGT
1 GCTAGTGTAAGAC-CATGTCTGGGACATGGCATCGGCATTAAGATAAGA
* * ** ** *
70279888 G-TCAGTGTAAGGCC-TGTTTGGGACATGGCATCAACACCGATAGATGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTA-AGATAAGA
* * * *
70279937 GCCAGTGTAAGACC-TGTCTAGGACATGGCATCGGCCTTGATATATGAA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-A-AGAT-AAGA
* **
70279986 G-TCAGTGTTAAGACC-TGTCTGGGACATGGCATC-G-AATAAGATGTGTGA
1 GCT-AGTG-TAAGACCATGTCTGGGACATGGCATCGGCATTAAGA--TAAGA
* * * *
70280034 GCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
70280072 CGAACCCTAT
Statistics
Matches: 242, Mismatches: 54, Indels: 52
0.70 0.16 0.15
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 25 0.10
46 31 0.13
47 37 0.15
48 65 0.27
49 53 0.22
50 28 0.12
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATAAGA
Found at i:70279961 original size:49 final size:49
Alignment explanation
Indices: 70279890--70280062 Score: 156
Period size: 49 Copynumber: 3.5 Consensus size: 49
70279880 TGACATGTGT
* * *
70279890 CAGTGTAAGGCCTGTTTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAGATGAGAGC
* ** * * * *
70279939 CAGTGTAAGACCTGTCTAGGACATGGCATCGGC-CTTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCAACAC-AGATAGATGAGAGC
* *
70279988 CAGTGTTAAGACCTGTCTGGGACATGGCATCGAATA-AGAT-G-TGTGAGC
1 CAGTG-TAAGACCTGTCTGGGACATGGCATC-AACACAGATAGATGAGAGC
* *
70280036 CAGTGTAAGACCATGTTTGGAACATGG
1 CAGTGTAAGACC-TGTCTGGGACATGG
70280063 AATCGGCATC
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
47 7 0.07
48 22 0.22
49 43 0.43
50 27 0.27
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCAACACAGATAGATGAGAGC
Found at i:70280268 original size:109 final size:109
Alignment explanation
Indices: 70280077--70280275 Score: 344
Period size: 109 Copynumber: 1.8 Consensus size: 109
70280067 GGCATCGAAC
* * *
70280077 CCTATGTTTGAGGCTTAGTGATTATCCTGTGGTAGTCCAAATGGTTCAACGGGAAATTTAAGTTT
1 CCTATGTTTGAGGCTTAGTGATTATCCTGTGGTAGTCCAAATGGTTCAACGAGAAAATTAAGGTT
* *
70280142 TAAGTTGCAAAGATAGAATTTATGGCTATGTTGTGAATGAATAT
66 TAAGTCGCAAAGATAGAACTTATGGCTATGTTGTGAATGAATAT
*
70280186 CCTATGTTTGATGCTTAGTGATTATCCTGTGGTAGTCCAAATGGTTCAACGAGAAAATTAAGGTT
1 CCTATGTTTGAGGCTTAGTGATTATCCTGTGGTAGTCCAAATGGTTCAACGAGAAAATTAAGGTT
70280251 TAAGTCGCAAAGATAGAACTTATGG
66 TAAGTCGCAAAGATAGAACTTATGG
70280276 TACAGGTATA
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 84 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.35
Consensus pattern (109 bp):
CCTATGTTTGAGGCTTAGTGATTATCCTGTGGTAGTCCAAATGGTTCAACGAGAAAATTAAGGTT
TAAGTCGCAAAGATAGAACTTATGGCTATGTTGTGAATGAATAT
Found at i:70285918 original size:20 final size:22
Alignment explanation
Indices: 70285879--70285918 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
70285869 TGTGACCCTG
70285879 TTTCATGAAAATTCTTCTAAGT
1 TTTCATGAAAATTCTTCTAAGT
*
70285901 TTTCAT-AAAGTT-TTCTAA
1 TTTCATGAAAATTCTTCTAA
70285919 TGTTCTCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.47
Consensus pattern (22 bp):
TTTCATGAAAATTCTTCTAAGT
Found at i:70291970 original size:28 final size:29
Alignment explanation
Indices: 70291939--70291993 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
70291929 ATTTGAAATT
*
70291939 CTGATAT-CATGGCCTGAAGCCAAATCTG
1 CTGATATGCATGGCCCGAAGCCAAATCTG
70291967 CTGATATGCATGGCCCGAAGCCAAATC
1 CTGATATGCATGGCCCGAAGCCAAATC
70291994 GATTTATCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (29 bp):
CTGATATGCATGGCCCGAAGCCAAATCTG
Found at i:70292809 original size:12 final size:12
Alignment explanation
Indices: 70292792--70292816 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70292782 GTTTTGTTTT
70292792 ATTTTAATTATC
1 ATTTTAATTATC
70292804 ATTTTAATTATC
1 ATTTTAATTATC
70292816 A
1 A
70292817 ATTACCATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTAATTATC
Found at i:70296033 original size:25 final size:25
Alignment explanation
Indices: 70295995--70296071 Score: 136
Period size: 25 Copynumber: 3.1 Consensus size: 25
70295985 ATCCAGGTAT
70295995 TCACGAACTATAGGCACTGATTCAA
1 TCACGAACTATAGGCACTGATTCAA
* *
70296020 TCACAAACTGTAGGCACTGATTCAA
1 TCACGAACTATAGGCACTGATTCAA
70296045 TCACGAACTATAGGCACTGATTCAA
1 TCACGAACTATAGGCACTGATTCAA
70296070 TC
1 TC
70296072 TTCTTTTCGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.25
Consensus pattern (25 bp):
TCACGAACTATAGGCACTGATTCAA
Found at i:70297394 original size:50 final size:49
Alignment explanation
Indices: 70297319--70297503 Score: 239
Period size: 50 Copynumber: 3.8 Consensus size: 49
70297309 TGAGTACACG
* *
70297319 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TGTTAGGTCGCA
* * * * *
70297369 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GTTAGGTCGCA
* *
70297419 TGTGTAGTACTAAGTGCAGGCTACTATTTGTACCGGA-GTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGTTAGGTCGCA
* *
70297466 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
70297504 AGCTTCGGCT
Statistics
Matches: 115, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
47 38 0.33
48 2 0.02
49 1 0.01
50 74 0.64
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGTTAGGTCGCA
Found at i:70297499 original size:97 final size:99
Alignment explanation
Indices: 70297315--70297503 Score: 301
Period size: 97 Copynumber: 1.9 Consensus size: 99
70297305 ATTTTGAGTA
*
70297315 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAC-GTTAAGTCGCATGTGTAGTACT
*
70297380 AAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
65 AAGTGCAGGCTACTACGCGTATCAGATGGTGAGGT
* * *
70297415 CACGTGTGTAGTACTAAGTGCAGGCTACTATTTGTACCGGA-GTT-GGTCGCATGTGTAGTACTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACGTTAAGTCGCATGTGTAGTACTA
*
70297478 AGTGCAGGCTACTATGCGTATCAGAT
66 AGTGCAGGCTACTACGCGTATCAGAT
70297504 AGCTTCGGCT
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
97 42 0.51
98 3 0.04
100 38 0.46
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (99 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACGTTAAGTCGCATGTGTAGTACTA
AGTGCAGGCTACTACGCGTATCAGATGGTGAGGT
Found at i:70301129 original size:26 final size:27
Alignment explanation
Indices: 70301093--70301145 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
70301083 TGTCAGCTAG
* *
70301093 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
70301119 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
70301146 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:70302478 original size:48 final size:48
Alignment explanation
Indices: 70302414--70302561 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
70302404 TTGATGTACA
*
70302414 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
70302462 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
70302510 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
70302558 AGAT
1 AGAT
70302562 GTGTATATAT
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:70307858 original size:15 final size:15
Alignment explanation
Indices: 70307829--70307877 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
70307819 ACGGAGAAGC
*
70307829 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
70307844 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
* *
70307859 CCATGATAAGGAAAT
1 CCAAGATAAAGAAAT
70307874 CCAA
1 CCAA
70307878 ATTACAATGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.57, C:0.16, G:0.12, T:0.14
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:70310731 original size:16 final size:17
Alignment explanation
Indices: 70310712--70310743 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70310702 TAAGGATTTC
70310712 ACTCAT-ATTATTTTTA
1 ACTCATAATTATTTTTA
70310728 ACTCATAATTATTTTT
1 ACTCATAATTATTTTT
70310744 TTTACAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.56
Consensus pattern (17 bp):
ACTCATAATTATTTTTA
Found at i:70311911 original size:27 final size:27
Alignment explanation
Indices: 70311871--70311924 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
70311861 AGGTACAACC
* *
70311871 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
70311898 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
70311925 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:70314327 original size:42 final size:42
Alignment explanation
Indices: 70314273--70314361 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
70314263 CCCGTGTGGC
* *
70314273 CAGGTCGTGTGTCTCACATGGCTACCAGACA-AGCCCGTGTCA
1 CAGGCCGTGTGTCTCACACGGCTACCAGACACA-CCCGTGTCA
*
70314315 CAGGCCGTGTGTCTCACACGGCTACCAGACACACCTGTGTCA
1 CAGGCCGTGTGTCTCACACGGCTACCAGACACACCCGTGTCA
70314357 CAGGC
1 CAGGC
70314362 TCTATGGACA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 42 0.98
43 1 0.02
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (42 bp):
CAGGCCGTGTGTCTCACACGGCTACCAGACACACCCGTGTCA
Found at i:70315940 original size:39 final size:39
Alignment explanation
Indices: 70315886--70315964 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
70315876 GATCTACCTA
*
70315886 AGGATTACCTACGCAGATAAGCAGAAGGGTGAGTTTATG
1 AGGATTACCTACGCAGATAAGCAGAAAGGTGAGTTTATG
70315925 AGGATTACCTACGCAGATAAGCAGAAAGGTGAGTTTATG
1 AGGATTACCTACGCAGATAAGCAGAAAGGTGAGTTTATG
70315964 A
1 A
70315965 AACTTAGTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (39 bp):
AGGATTACCTACGCAGATAAGCAGAAAGGTGAGTTTATG
Found at i:70317652 original size:27 final size:27
Alignment explanation
Indices: 70317606--70317674 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
70317596 ATATGCTAGT
* *
70317606 ATTATTAAAATACCCCTGTAAGG-TAGA
1 ATTACTAAAATACCCATGT-AGGATAGA
* *
70317633 ATTACTGAAATGCCCATGTAGGATAGA
1 ATTACTAAAATACCCATGTAGGATAGA
70317660 ATTACTAAAATACCC
1 ATTACTAAAATACCC
70317675 TTGGTTTACA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.09
27 32 0.91
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (27 bp):
ATTACTAAAATACCCATGTAGGATAGA
Found at i:70317689 original size:27 final size:27
Alignment explanation
Indices: 70317659--70317973 Score: 271
Period size: 27 Copynumber: 11.7 Consensus size: 27
70317649 TGTAGGATAG
* * *
70317659 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGCAA
* *
70317686 AATTACCAAAATACCCTCGATTAGC-A
1 AATTACCAAAATACCCTTGATTTGCAA
* * *
70317712 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGCAA
* * **
70317739 AATTACCAAAATACCCCTAATTTTTAA
1 AATTACCAAAATACCCTTGATTTGCAA
* * * *
70317766 AATTACCGAAATACCCTTAACTTGTAA
1 AATTACCAAAATACCCTTGATTTGCAA
* ** *
70317793 AATTATCAAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGCAA
* * *
70317820 AATTACCAAAATACCCCTAATTTGGAA
1 AATTACCAAAATACCCTTGATTTGCAA
* *
70317847 AATTACTAAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGCAA
*
70317874 AATTA-CAGAAATACCCTTGATTTACAA
1 AATTACCA-AAATACCCTTGATTTGCAA
*
70317901 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTACCAAAATACCCTTGA-TTTGC-AA
* * *
70317929 AATTA-TAGAAATACCCTTGGTTTG-TA
1 AATTACCA-AAATACCCTTGATTTGCAA
* *
70317955 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
70317974 TAGGGTGAAA
Statistics
Matches: 242, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
26 37 0.15
27 183 0.76
28 22 0.09
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGCAA
Found at i:70318278 original size:41 final size:41
Alignment explanation
Indices: 70318221--70318336 Score: 144
Period size: 41 Copynumber: 2.8 Consensus size: 41
70318211 GAAATTGAGG
* * *
70318221 ATCGCACGGTTGCTTGAAGACCGTGGATCCACCGATTGAGA
1 ATCGCATGGTTGCTTGAAGATCGTGGATCCACCGATTAAGA
* * * *
70318262 ATTGTATGGTTACTTGACA-ATCGTGGATCCACCGATTAAGG
1 ATCGCATGGTTGCTTGA-AGATCGTGGATCCACCGATTAAGA
*
70318303 ATCGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATCGCATGGTTGCTTGAAGATCGTGGATCCACCG
70318337 GTGGCTTTTA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 61 0.98
42 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
ATCGCATGGTTGCTTGAAGATCGTGGATCCACCGATTAAGA
Found at i:70318529 original size:22 final size:22
Alignment explanation
Indices: 70318478--70318541 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
70318468 CCAATTATTT
* *
70318478 TGATTATGGCTTTGCGCCAACC
1 TGATTATGGCTCTGTGCCAACC
*
70318500 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
* *
70318522 TGATTATGGTTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
70318542 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:70318769 original size:22 final size:22
Alignment explanation
Indices: 70318744--70318797 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
70318734 GTTGTTGCGA
*
70318744 TGTTTACGGCTATGTGCTGTCC
1 TGTTTACGGCTATGTGCTATCC
**
70318766 TGTTTACAACTATGTGCTATCC
1 TGTTTACGGCTATGTGCTATCC
*
70318788 TGTCTACGGC
1 TGTTTACGGC
70318798 GTTGAGCCGT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (22 bp):
TGTTTACGGCTATGTGCTATCC
Found at i:70320954 original size:9 final size:10
Alignment explanation
Indices: 70320920--70320954 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
70320910 TAGGTTGCTT
70320920 TGGGCCATGA
1 TGGGCCATGA
*
70320930 TGGGCCAAGA
1 TGGGCCATGA
70320940 TGGGCCATG-
1 TGGGCCATGA
70320949 TGGGCC
1 TGGGCC
70320955 CATAGGCCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.26
10 17 0.74
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (10 bp):
TGGGCCATGA
Found at i:70321119 original size:27 final size:28
Alignment explanation
Indices: 70321089--70321158 Score: 101
Period size: 26 Copynumber: 2.6 Consensus size: 28
70321079 TGTAGGGTAG
70321089 AATTACTGAAATACCCTTT-GTTTACAA
1 AATTACTGAAATACCCTTTGGTTTACAA
70321116 AATTACTG-AATA-CCTTTGGTTTACAA
1 AATTACTGAAATACCCTTTGGTTTACAA
**
70321142 AATTACCAAAATACCCT
1 AATTACTGAAATACCCT
70321159 CTATTAGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
25 5 0.13
26 18 0.47
27 12 0.32
28 3 0.08
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (28 bp):
AATTACTGAAATACCCTTTGGTTTACAA
Found at i:70321170 original size:27 final size:28
Alignment explanation
Indices: 70321140--70321429 Score: 176
Period size: 27 Copynumber: 10.7 Consensus size: 28
70321130 TTTGGTTTAC
*
70321140 AAAATTACCAAAATACCCTCT-ATTAGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*
70321167 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
*** ** * *
70321194 GGTATTACTGAAATACCCTC-AACTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* *
70321221 AAAATTATCGAAATACCCTC-GATTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* *
70321248 AAATTTACCAAAATACCCT-TGATTTGG
1 AAAATTACCAAAATACCCTCTGATTTGT
* * *
70321275 AAAATTATCGAAATACCCT-TGATTTGG
1 AAAATTACCAAAATACCCTCTGATTTGT
*
70321302 AAAATTA-CAGAAATACCC-CTGATTT-A
1 AAAATTACCA-AAATACCCTCTGATTTGT
* *
70321328 AAAATTTTCAAAAATACCCT-TGACTTT-T
1 AAAA-TTACCAAAATACCCTCTGA-TTTGT
** * *
70321356 AAAAATTATAAAAATACCAT-T-AGTTTGC
1 -AAAATTACCAAAATACCCTCTGA-TTTGT
* * *
70321384 AAAAGTACTAAAATACCCT-TGGTTTGT
1 AAAATTACCAAAATACCCTCTGATTTGT
* * *
70321411 AGATTTACCAAAACACCCT
1 AAAATTACCAAAATACCCT
70321430 TGTAGGGTGA
Statistics
Matches: 209, Mismatches: 42, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
26 7 0.03
27 180 0.86
28 18 0.09
29 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (28 bp):
AAAATTACCAAAATACCCTCTGATTTGT
Found at i:70321273 original size:81 final size:80
Alignment explanation
Indices: 70321140--70321431 Score: 212
Period size: 81 Copynumber: 3.6 Consensus size: 80
70321130 TTTGGTTTAC
* * * * * * **
70321140 AAAATTACCAAAATACCCTCTATTAGTAAAATTACCAAAATACCCCTAATTTGTG-GTATTA-CT
1 AAAATTA-CGAAATACCCTCGATTTGTAAATTTACCAAAATACCCTTGATTTG-GAAAATTATC-
*
70321203 GAAATACCCTCAACTTGT
63 GAAATACCCTCAACTTGG
70321221 AAAATTATCGAAATACCCTCGATTTGTAAATTTACCAAAATACCCTTGATTTGGAAAATTATCGA
1 AAAATTA-CGAAATACCCTCGATTTGTAAATTTACCAAAATACCCTTGATTTGGAAAATTATCGA
** *
70321286 AATACCCTTGATTTGG
65 AATACCCTCAACTTGG
** * * ** *
70321302 AAAATTACAGAAATACCC-CTGATTTAAAAATTTTCAAAAATACCCTTGACTTTTAAAAATTATA
1 AAAATTAC-GAAATACCCTC-GATTTGTAAATTTACCAAAATACCCTTGA-TTTGGAAAATTATC
* * * ** *
70321366 AAAATACCATTAGTTTGC
63 GAAATACCCTCAACTTGG
* * * * * *
70321384 AAAAGTACTAAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 AAAATTAC-GAAATACCCTCGATTTGTAAATTTACCAAAATACCCTTG
70321432 TAGGGTGAAA
Statistics
Matches: 169, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
80 3 0.02
81 105 0.62
82 61 0.36
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (80 bp):
AAAATTACGAAATACCCTCGATTTGTAAATTTACCAAAATACCCTTGATTTGGAAAATTATCGAA
ATACCCTCAACTTGG
Found at i:70321429 original size:82 final size:81
Alignment explanation
Indices: 70321230--70321431 Score: 219
Period size: 82 Copynumber: 2.5 Consensus size: 81
70321220 TAAAATTATC
* * ** *
70321230 GAAATACCCTCGATTTGTAAATTTACCAAAATACCCTTGATTTGGAAAATTATCGAAATACCCTT
1 GAAATACCCTTGATTTGTAAATTTACCAAAATACCCTTGATTTGAAAAATTATAAAAATACCATT
* *
70321295 GATTTGGAAAATTACA
66 GATTTGCAAAAGTACA
* ** * * *
70321311 GAAATACCCCTGATTTAAAAATTTTCAAAAATACCCTTGACTTTTAAAAATTATAAAAATACCAT
1 GAAATACCCTTGATTTGTAAATTTACCAAAATACCCTTGA-TTTGAAAAATTATAAAAATACCAT
70321376 T-AGTTTGCAAAAGTACTA
65 TGA-TTTGCAAAAGTAC-A
* * *
70321394 -AAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 GAAATACCCTTGATTTGTAAATTTACCAAAATACCCTTG
70321432 TAGGGTGAAA
Statistics
Matches: 97, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
81 35 0.36
82 61 0.63
83 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (81 bp):
GAAATACCCTTGATTTGTAAATTTACCAAAATACCCTTGATTTGAAAAATTATAAAAATACCATT
GATTTGCAAAAGTACA
Found at i:70326651 original size:34 final size:33
Alignment explanation
Indices: 70326605--70326671 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
70326595 TTGAACAATT
70326605 TGGGCTTAAGCCC-ATGTCAGTAGCAATATCAGTA
1 TGGGCTTAAGCCCAAT-TCAGTA-CAATATCAGTA
*
70326639 TGGGCCTT-AGCCCAATTCAGTACAGTATCAGTA
1 TGGG-CTTAAGCCCAATTCAGTACAATATCAGTA
70326672 ATGCATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 10 0.33
34 15 0.50
35 5 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (33 bp):
TGGGCTTAAGCCCAATTCAGTACAATATCAGTA
Found at i:70333983 original size:39 final size:39
Alignment explanation
Indices: 70333927--70334089 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
70333917 CAGTGATGTT
*
70333927 TATCCGGACTTAAGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
70333966 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
70334005 TATCTGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
70334044 TAACCGGACTTAAGGTTCGCAGGTTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
70334083 TGTCCGG
1 TATCCGG
70334090 GCTAAAGTCC
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:70334116 original size:78 final size:78
Alignment explanation
Indices: 70333927--70334127 Score: 194
Period size: 78 Copynumber: 2.6 Consensus size: 78
70333917 CAGTGATGTT
* * * * *
70333927 TATCCGGACTTAAGGTCCGCAGGCTATGTA-CTGGAATTATATCCGGACTTAGGGTCCGCAGGCT
1 TATCCGAACTTAAAGTCCACAGGCTATG-AGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCT
* *
70333991 ATGTGCTGGAATTA
65 ACGTGCTGGAAATA
* * * * * *
70334005 TATCTGAACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTTCGCAGGTTA
1 TATCCGAACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
70334070 CGTGCTGGAAATA
66 CGTGCTGGAAATA
* ** *
70334083 TGTCCGGGC-TAAAGTCCCACAGGCT-TCGAGCTGGTATTAT-ACCGG
1 TATCCGAACTTAAAGT-CCACAGGCTAT-GAGCTGGAATTATAACCGG
70334128 GTTTAAATTT
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
77 11 0.11
78 92 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
TATCCGAACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
CGTGCTGGAAATA
Found at i:70342174 original size:39 final size:39
Alignment explanation
Indices: 70342118--70342280 Score: 209
Period size: 39 Copynumber: 4.2 Consensus size: 39
70342108 CAGTGATGTT
*
70342118 TATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCGGACTTATGGTCCGCAGGCTATGTACTGGAATTA
*
70342157 TATCCGGACTTATGGTCCGCAGGCTATGTACTAGAATTA
1 TATCCGGACTTATGGTCCGCAGGCTATGTACTGGAATTA
* * * *
70342196 TATTCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTATGGTCCGCAGGCTATGTACTGGAATTA
* * * * * *
70342235 TAACCGGACTTATGGTCTGTAGGCTACGTGCTGGAAATA
1 TATCCGGACTTATGGTCCGCAGGCTATGTACTGGAATTA
*
70342274 TGTCCGG
1 TATCCGG
70342281 GCTAAAGTCC
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTATGGTCCGCAGGCTATGTACTGGAATTA
Found at i:70342307 original size:78 final size:78
Alignment explanation
Indices: 70342118--70342318 Score: 194
Period size: 78 Copynumber: 2.6 Consensus size: 78
70342108 CAGTGATGTT
** * *
70342118 TATCCGGACTTAGGGTCCGCAGGCTATGTA-CTGGAATTATATCCGGACTTATGGTCCGCAGGCT
1 TATCCGGACTTAAAGTCCACAGGCTATG-AGCTGGAATTATAACCGGACTTATGGTCCGCAGGCT
* *
70342182 ATGTACTAGAATTA
65 ACGTACTAGAAATA
* * * * *
70342196 TATTCGGACTTAAGGTCCACAGGCTATGTGCTGGAATTATAACCGGACTTATGGTCTGTAGGCTA
1 TATCCGGACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTATGGTCCGCAGGCTA
* *
70342261 CGTGCTGGAAATA
66 CGTACTAGAAATA
* * * *
70342274 TGTCCGGGC-TAAAGTCCCGCAGGCT-TCGAGCTGGTATTAT-ACCGG
1 TATCCGGACTTAAAGT-CCACAGGCTAT-GAGCTGGAATTATAACCGG
70342319 GTTTAAATTT
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
77 11 0.11
78 91 0.89
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCACAGGCTATGAGCTGGAATTATAACCGGACTTATGGTCCGCAGGCTA
CGTACTAGAAATA
Found at i:70351456 original size:27 final size:27
Alignment explanation
Indices: 70351395--70351472 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
70351385 CAAAAATATT
*
70351395 ATCAGGTGGGCCTTAA-CCCATTAACAGA
1 ATCAGGTGGGCC-TAAGCCCAAT-ACAGA
70351423 ATCAGGTGGGCCTAAGCCCAATACAGA
1 ATCAGGTGGGCCTAAGCCCAATACAGA
*
70351450 ATTAGGTGGGCCTAAGCCCAATA
1 ATCAGGTGGGCCTAAGCCCAATA
70351473 TAATTTCACT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 30 0.64
28 17 0.36
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
ATCAGGTGGGCCTAAGCCCAATACAGA
Found at i:70357425 original size:55 final size:56
Alignment explanation
Indices: 70357338--70357500 Score: 208
Period size: 55 Copynumber: 2.9 Consensus size: 56
70357328 ATTAGGGTTT
70357338 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCA
* * * *
70357393 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAA-GTTTCTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC--TAAGGCA
** * *
70357449 AAGG-CCCCATGTAAGACCACGCCACGGCATGGCAATTGGTAAGGTTTCTAAG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAG
70357501 ACCATTTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
53 5 0.05
54 7 0.08
55 63 0.69
56 11 0.12
57 5 0.05
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCA
Found at i:70359526 original size:18 final size:18
Alignment explanation
Indices: 70359503--70359539 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70359493 CACCTAGGTA
*
70359503 AGGCAAACGTTATTGCTG
1 AGGCAAACATTATTGCTG
*
70359521 AGGCAAACATTGTTGCTG
1 AGGCAAACATTATTGCTG
70359539 A
1 A
70359540 TGCTTTGTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (18 bp):
AGGCAAACATTATTGCTG
Found at i:70362420 original size:55 final size:54
Alignment explanation
Indices: 70362316--70362520 Score: 227
Period size: 55 Copynumber: 3.8 Consensus size: 54
70362306 AGGTTTAAGA
*
70362316 ATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGCAAGG
* * * *
70362371 ATATCATGTAAGACCATGTCAAGACATGGCATTGATATGTTTCTATAAGGCAAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC-AAGG
* * * * *
70362427 -TCCCATGGAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGTAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAGG
* * * *
70362479 ATACCATGTAATACCATGTCGAGACATGGCAATGGTAAGTTT
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTT
70362521 TGTAACACCC
Statistics
Matches: 123, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 41 0.33
54 11 0.09
55 63 0.51
56 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGCAAGG
Found at i:70364422 original size:54 final size:53
Alignment explanation
Indices: 70364338--70364448 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
70364328 AGGAAGCGTC
* *
70364338 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * **
70364392 CTGGTGGCTTTGCCACGATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
70364445 CTGG
1 CTGG
70364449 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:70364444 original size:26 final size:26
Alignment explanation
Indices: 70364338--70364448 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
70364328 AGGAAGCGTC
* *
70364338 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
70364365 CTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
70364392 CTGGTGGCTTTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
70364419 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
70364445 CTGG
1 CTGG
70364449 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 16 0.22
27 54 0.75
28 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:70372262 original size:111 final size:111
Alignment explanation
Indices: 70372068--70372290 Score: 446
Period size: 111 Copynumber: 2.0 Consensus size: 111
70372058 GGGGTTATTA
70372068 ACAGGTGTGTAACTGATGCCCTCTTATAGGCTAGATCGGTAAAAGTCGAAAAGCCGAAATACCGA
1 ACAGGTGTGTAACTGATGCCCTCTTATAGGCTAGATCGGTAAAAGTCGAAAAGCCGAAATACCGA
70372133 AAAGCTGGTATTTTGAGAAATGCGGTGTGCGAATGCTCATGAGATT
66 AAAGCTGGTATTTTGAGAAATGCGGTGTGCGAATGCTCATGAGATT
70372179 ACAGGTGTGTAACTGATGCCCTCTTATAGGCTAGATCGGTAAAAGTCGAAAAGCCGAAATACCGA
1 ACAGGTGTGTAACTGATGCCCTCTTATAGGCTAGATCGGTAAAAGTCGAAAAGCCGAAATACCGA
70372244 AAAGCTGGTATTTTGAGAAATGCGGTGTGCGAATGCTCATGAGATT
66 AAAGCTGGTATTTTGAGAAATGCGGTGTGCGAATGCTCATGAGATT
70372290 A
1 A
70372291 ATAGTTGATG
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 112 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (111 bp):
ACAGGTGTGTAACTGATGCCCTCTTATAGGCTAGATCGGTAAAAGTCGAAAAGCCGAAATACCGA
AAAGCTGGTATTTTGAGAAATGCGGTGTGCGAATGCTCATGAGATT
Found at i:70372725 original size:26 final size:26
Alignment explanation
Indices: 70372657--70372766 Score: 132
Period size: 26 Copynumber: 4.2 Consensus size: 26
70372647 AGGAAGCGTC
* *
70372657 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
70372684 CTGGTGGCTCTACCACATATAT-TGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
70372710 CTGGTGGCTTTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
70372737 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
70372763 CTGG
1 CTGG
70372767 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 36 0.50
27 36 0.50
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:70372740 original size:53 final size:53
Alignment explanation
Indices: 70372657--70372766 Score: 150
Period size: 53 Copynumber: 2.1 Consensus size: 53
70372647 AGGAAGCGTC
*
70372657 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATAT-TGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * **
70372710 CTGGTGGCTTTGCCACGATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
70372763 CTGG
1 CTGG
70372767 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
52 3 0.06
53 47 0.94
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:70379051 original size:24 final size:24
Alignment explanation
Indices: 70379019--70379094 Score: 134
Period size: 24 Copynumber: 3.2 Consensus size: 24
70379009 ACTCTGTCAA
70379019 GAGAGGATTTAGGAGCTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
70379043 GAGAGGATTTAGGAGCGGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
70379067 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGCTGATAAGG
70379091 GAGA
1 GAGA
70379095 ACAGTGTTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.33, C:0.04, G:0.43, T:0.20
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:70379269 original size:37 final size:38
Alignment explanation
Indices: 70379218--70379290 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
70379208 AAGTTGTGCC
*
70379218 ATTTTTCTGACCATC-CTTCCTCCTCTTCTCTTCTTTT
1 ATTTTTCTCACCATCACTTCCTCCTCTTCTCTTCTTTT
* * *
70379255 ATTTTTCTCTCCATCTACTTTCTCCTCTTCTTTTCT
1 ATTTTTCTCACCATC-ACTTCCTCCTCTTCTCTTCT
70379291 CCATAGCCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 13 0.43
39 17 0.57
ACGTcount: A:0.08, C:0.34, G:0.01, T:0.56
Consensus pattern (38 bp):
ATTTTTCTCACCATCACTTCCTCCTCTTCTCTTCTTTT
Found at i:70380608 original size:26 final size:26
Alignment explanation
Indices: 70380501--70380611 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
70380491 TGGAAGCGTC
* * *
70380501 CTGGTGGCTATGCCATTATTATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGTT
70380528 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
70380555 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
70380582 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
70380608 CTGG
1 CTGG
70380612 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 16 0.21
27 59 0.77
28 2 0.03
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:70381784 original size:16 final size:16
Alignment explanation
Indices: 70381763--70381793 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70381753 ATAAATTTGA
70381763 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
70381779 TTAAGTAAGTTAGTA
1 TTAAGTAAGTAAGTA
70381794 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:70385650 original size:14 final size:15
Alignment explanation
Indices: 70385633--70385661 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70385623 GCATGAAAAT
70385633 TTCACACA-AATAAA
1 TTCACACATAATAAA
70385647 TTCACACATAATAAA
1 TTCACACATAATAAA
70385662 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:70387944 original size:43 final size:43
Alignment explanation
Indices: 70387883--70387969 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
70387873 TAGTCAGATC
*
70387883 AACCCAAATACCCGATGCTGAAACAACATGGCCCAGAAAACTG
1 AACCCAAATACCCGATGCTAAAACAACATGGCCCAGAAAACTG
*
70387926 AACCCGAATACCCGATGCTAAAACAACATGGCCCAGAAAACTG
1 AACCCAAATACCCGATGCTAAAACAACATGGCCCAGAAAACTG
70387969 A
1 A
70387970 CTTCACATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.43, C:0.30, G:0.16, T:0.11
Consensus pattern (43 bp):
AACCCAAATACCCGATGCTAAAACAACATGGCCCAGAAAACTG
Found at i:70393623 original size:14 final size:15
Alignment explanation
Indices: 70393606--70393634 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70393596 GCATGAAAAT
70393606 TTCACACA-AATAAA
1 TTCACACATAATAAA
70393620 TTCACACATAATAAA
1 TTCACACATAATAAA
70393635 AACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:70395014 original size:42 final size:43
Alignment explanation
Indices: 70394937--70395019 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 43
70394927 CCCAAACATT
* *
70394937 GTCTTACATGTAATCAAATATCGATGCCACTGTCCTAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCTAGACAGG
*
70394980 GTCTTACACGAAATCATATA-CGATGCCGA-TGTCCTAGACA
1 GTCTTACACGAAATCAAATATCGATGCC-ACTGTCCTAGACA
70395020 TGGTTTTCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 18 0.50
43 18 0.50
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCTAGACAGG
Found at i:70397752 original size:22 final size:23
Alignment explanation
Indices: 70397708--70397753 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
70397698 TTTTTTCCTT
70397708 GACACAAGGTCACACGCCCGTGTG
1 GACACAAGG-CACACGCCCGTGTG
* *
70397732 GACACAAGG-ACACTCCTGTGTG
1 GACACAAGGCACACGCCCGTGTG
70397754 CCTTCCGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
24 9 0.45
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.15
Consensus pattern (23 bp):
GACACAAGGCACACGCCCGTGTG
Found at i:70399028 original size:37 final size:37
Alignment explanation
Indices: 70398975--70399074 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
70398965 CAAATAGTCC
* **
70398975 CCACACGTAGTTATCGGGTCTTTTCCGGGCAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGGCAAAATCT
*
70399012 CCACACGTAGTCATCGGGTCTTACCCGGGCATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGGCAAAATCT
70399049 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
70399075 AGAATATATT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGGCAAAATCT
Found at i:70399276 original size:48 final size:48
Alignment explanation
Indices: 70399218--70399653 Score: 701
Period size: 48 Copynumber: 9.0 Consensus size: 48
70399208 ATATACACAC
* *
70399218 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
70399266 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
70399314 ATCTTATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
70399362 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
70399410 ATCTCATATATATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
70399460 ATCTCATACATGTTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
70399508 ATGTCATACATATTCCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
70399556 ATCTCATACATATTCCACATTAGCCATTCAGTTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
70399604 ATCTCATACATATTCCACATTATCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
70399652 AT
1 AT
70399654 ATATTTATCT
Statistics
Matches: 367, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 321 0.87
50 46 0.13
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:70399537 original size:194 final size:192
Alignment explanation
Indices: 70399218--70399653 Score: 710
Period size: 194 Copynumber: 2.3 Consensus size: 192
70399208 ATATACACAC
* * *
70399218 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
* * *
70399283 CACTAGCCATTCGGCTTTACCACATATACATATCTTATATATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTCCACACTAGCCATTCGGCTT
* *
70399348 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
131 TACCACATATACATATCTCATACATATTCCACATTAGCCATTCAGCTTTACCACATATACAT
* *
70399410 ATCTCATATATATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATGTTT
1 ATCTC--ATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTT
* * *
70399475 CACATTAGCCATTCGGCTTTACCACATATACATATGTCATACATATTCCACATTAGCCATTCGGC
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTCCACACTAGCCATTCGGC
*
70399540 TTTACCACATATACATATCTCATACATATTCCACATTAGCCATTCAGTTTTACCACATATACAT
129 TTTACCACATATACATATCTCATACATATTCCACATTAGCCATTCAGCTTTACCACATATACAT
* *
70399604 ATCTCATACATATTCCACATTATCCATTCAGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATAT
70399654 ATATTTATCT
Statistics
Matches: 225, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
192 47 0.21
194 178 0.79
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (192 bp):
ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTCCACACTAGCCATTCGGCTT
TACCACATATACATATCTCATACATATTCCACATTAGCCATTCAGCTTTACCACATATACAT
Found at i:70403423 original size:46 final size:46
Alignment explanation
Indices: 70403373--70403548 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
70403363 TGATTGAGCA
*
70403373 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70403419 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70403464 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70403512 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70403549 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70403529 original size:93 final size:93
Alignment explanation
Indices: 70403370--70403541 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
70403360 GGATGATTGA
*
70403370 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
70403435 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70403463 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
70403527 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
70403542 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70412935 original size:48 final size:48
Alignment explanation
Indices: 70412832--70412966 Score: 157
Period size: 48 Copynumber: 2.9 Consensus size: 48
70412822 GGGTGAATTA
* * * *
70412832 CCGATGCCATGTCCCAGACATGGTCTTATATTGGCTCACATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGG
* * * * * *
70412880 CCAATGCCATGTCCCAGTCATGGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGG
*
70412928 TCGATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT
70412967 GTCACCCCAA
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
46 20 0.28
47 3 0.04
48 48 0.68
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGG
Found at i:70414186 original size:20 final size:19
Alignment explanation
Indices: 70414163--70414204 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
70414153 TTTAAAACAC
70414163 TTTTACAC-TTTTATCGCATA
1 TTTTACACATTTT-TCGCA-A
*
70414183 TTTTTCACATTTTTCGCAA
1 TTTTACACATTTTTCGCAA
70414202 TTT
1 TTT
70414205 AGTCCTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 12 0.60
21 4 0.20
ACGTcount: A:0.21, C:0.19, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTACACATTTTTCGCAA
Found at i:70417956 original size:19 final size:19
Alignment explanation
Indices: 70417935--70418005 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 19
70417925 TTTTTAGTAA
*
70417935 AAAAATTATGAGAGATTAAA
1 AAAAATTATGAGAGA-TAAC
*
70417955 AAAAAGTATGA-AG-TAAC
1 AAAAATTATGAGAGATAAC
*
70417972 AAAAATTACGAG-GAATAAC
1 AAAAATTATGAGAG-ATAAC
*
70417991 AAAACTTATGAGAGA
1 AAAAATTATGAGAGA
70418006 AAAATTTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 13 0.32
19 17 0.41
20 11 0.27
ACGTcount: A:0.58, C:0.06, G:0.17, T:0.20
Consensus pattern (19 bp):
AAAAATTATGAGAGATAAC
Found at i:70419657 original size:18 final size:18
Alignment explanation
Indices: 70419636--70419670 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70419626 ACTACTACTT
70419636 CTACATCTACCTCTATGG
1 CTACATCTACCTCTATGG
* *
70419654 CTACGTCTATCTCTATG
1 CTACATCTACCTCTATG
70419671 TTAATTGGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.37
Consensus pattern (18 bp):
CTACATCTACCTCTATGG
Found at i:70426617 original size:30 final size:30
Alignment explanation
Indices: 70426581--70426646 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
70426571 AATCGTAAAT
* *
70426581 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAAACTAAC
*
70426611 TTTGGCACTAAGTGTGAGATTTAAATTAAC
1 TTTGGCACTAAGTGTGAGATTTAAACTAAC
70426641 TTTGGC
1 TTTGGC
70426647 TACTTGAGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGAGATTTAAACTAAC
Found at i:70433971 original size:30 final size:30
Alignment explanation
Indices: 70433911--70433972 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
70433901 AATCGAAAAT
**
70433911 TTTGGCACTAAATGTGTTATTGAAACTAGC
1 TTTGGCACTAAATGTGCGATTGAAACTAGC
* * *
70433941 TTTGGCACTAAGTGTGCGATTTAAATTAGC
1 TTTGGCACTAAATGTGCGATTGAAACTAGC
70433971 TT
1 TT
70433973 CGGCTACTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (30 bp):
TTTGGCACTAAATGTGCGATTGAAACTAGC
Found at i:70436470 original size:26 final size:27
Alignment explanation
Indices: 70436421--70436471 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
70436411 ATTCTAGACC
*
70436421 TAGGGGTATTTTGGTCATTTTTTCCCT
1 TAGGGGTATTTTGGTCAATTTTTCCCT
70436448 TAGGGGCT-TTTTGGT-AATTTTTCC
1 TAGGGG-TATTTTGGTCAATTTTTCC
70436472 ATAATTACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 8 0.36
27 13 0.59
28 1 0.05
ACGTcount: A:0.12, C:0.14, G:0.24, T:0.51
Consensus pattern (27 bp):
TAGGGGTATTTTGGTCAATTTTTCCCT
Found at i:70436789 original size:28 final size:28
Alignment explanation
Indices: 70436757--70436871 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
70436747 TACCTATATC
* *
70436757 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
70436785 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* * *
70436814 TAGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
* *
70436843 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
70436871 T
1 T
70436872 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
28 27 0.38
29 44 0.61
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:70441748 original size:29 final size:28
Alignment explanation
Indices: 70441715--70441799 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 28
70441705 CATTAAGCCC
* *
70441715 AATCATATTCATATGGCCCACTAGGCCGA
1 AATCACATT-ATATGGCCCATTAGGCCGA
* * *
70441744 AATCACCTGTATATGGCCCATTAGGTCTA
1 AATCACAT-TATATGGCCCATTAGGCCGA
70441773 AATCACATTTATATGGCCCATTAGGCC
1 AATCACA-TTATATGGCCCATTAGGCC
70441800 TAGTCACATT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
29 45 0.96
30 2 0.04
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (28 bp):
AATCACATTATATGGCCCATTAGGCCGA
Found at i:70441754 original size:57 final size:58
Alignment explanation
Indices: 70441691--70441799 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 58
70441681 AATTTCACAT
* * *
70441691 ACCTGTATCTGACCCATTAAG-CCCAATCATATTCATATGGCCCACTAGGCCGAAATC
1 ACCTGTATATGACCCATTAAGTCCAAATCACATTCATATGGCCCACTAGGCCGAAATC
* * * * *
70441748 ACCTGTATATGGCCCATTAGGTCTAAATCACATTTATATGGCCCATTAGGCC
1 ACCTGTATATGACCCATTAAGTCCAAATCACATTCATATGGCCCACTAGGCC
70441800 TAGTCACATT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 18 0.42
58 25 0.58
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGACCCATTAAGTCCAAATCACATTCATATGGCCCACTAGGCCGAAATC
Found at i:70443111 original size:17 final size:16
Alignment explanation
Indices: 70443078--70443109 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70443068 AAGTTCAGGA
70443078 TTTCGGGATTTTTGGG
1 TTTCGGGATTTTTGGG
70443094 TTTCGGGATTTTTGGG
1 TTTCGGGATTTTTGGG
70443110 GTGTTACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.38, T:0.50
Consensus pattern (16 bp):
TTTCGGGATTTTTGGG
Found at i:70448423 original size:12 final size:12
Alignment explanation
Indices: 70448406--70448446 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
70448396 CCCTCGTTTC
*
70448406 TTTTCACTCACT
1 TTTTCACACACT
70448418 TTTTCACACACT
1 TTTTCACACACT
*
70448430 TTTTCACACACC
1 TTTTCACACACT
70448442 TTTTC
1 TTTTC
70448447 GCTCTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.20, C:0.34, G:0.00, T:0.46
Consensus pattern (12 bp):
TTTTCACACACT
Found at i:70451881 original size:65 final size:65
Alignment explanation
Indices: 70451777--70451906 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 65
70451767 TAGCCTGCAC
* *
70451777 TTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACATTTAGTACTACACACGT
1 TTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGT
*
70451842 TTAGTACTATACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGT
1 TTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGT
70451907 GACCTCACCA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (65 bp):
TTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTACACTTAGTACAACACACGT
Found at i:70454201 original size:15 final size:15
Alignment explanation
Indices: 70454145--70454209 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
70454135 TAAAGATAAC
* *
70454145 AAGAAAACC-GAATG
1 AAGAAATCCAGAATA
70454159 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
70454174 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
70454189 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
70454204 AAGAAA
1 AAGAAA
70454210 CCCAAGATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 11 0.26
15 28 0.67
16 3 0.07
ACGTcount: A:0.62, C:0.14, G:0.15, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70454211 original size:30 final size:31
Alignment explanation
Indices: 70454145--70454213 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
70454135 TAAAGATAAC
* *
70454145 AAGAAAACC-GAATGAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
70454175 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
70454204 AAGAAACCCA
1 AAGAAACCCA
70454214 AGATACGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.26
30 25 0.74
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:70457366 original size:51 final size:49
Alignment explanation
Indices: 70457197--70457381 Score: 185
Period size: 51 Copynumber: 3.7 Consensus size: 49
70457187 AAGCTATCTG
* * *
70457197 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCT-G-
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-C-ACAGTATCGA
* * ** ** *
70457246 GTACACGTAGTAGCCTGCATTTAGTACTACACACATGACATCACCATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACA-CAGTATCGA
* * *
70457296 ATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCACAGTTTTCGA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CACAG-TATCGA
*
70457347 GTACGCATAGTAGCCTGCACTTAGTACTACACATG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATG
70457382 CGACCTCACA
Statistics
Matches: 110, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 32 0.29
50 36 0.33
51 37 0.34
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGTGACACAGTATCGA
Found at i:70463842 original size:42 final size:43
Alignment explanation
Indices: 70463748--70463863 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 43
70463738 CGGGTACAAT
* * * * *
70463748 GCCGATGTCCTAGACATGGTCTTACATGTAATTCAGTATCGAT
1 GCCGATGTCCCAAACAGGGTCTTACACGTAATTCAGTATCGAA
** *
70463791 GCCTCTGTCCCAAATAGGGTCTTACACG-AATTCAGATAT-GAA
1 GCCGATGTCCCAAACAGGGTCTTACACGTAATTCAG-TATCGAA
* *
70463833 GCCGATGTCCCAGACATGGTCTTACACGTAA
1 GCCGATGTCCCAAACAGGGTCTTACACGTAA
70463864 ATCTCAAATC
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
42 32 0.55
43 26 0.45
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
GCCGATGTCCCAAACAGGGTCTTACACGTAATTCAGTATCGAA
Found at i:70466293 original size:8 final size:8
Alignment explanation
Indices: 70466280--70466304 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
70466270 TTATCAGCTC
70466280 TTATTATT
1 TTATTATT
70466288 TTATTATT
1 TTATTATT
70466296 TTATTATT
1 TTATTATT
70466304 T
1 T
70466305 CAAATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTATT
Found at i:70469243 original size:20 final size:20
Alignment explanation
Indices: 70469215--70469252 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70469205 TAAGGATTTG
* *
70469215 TTTTGGTAAATTTTTAGATA
1 TTTTAGTAAAGTTTTAGATA
70469235 TTTTAGTAAAGTTTTAGA
1 TTTTAGTAAAGTTTTAGA
70469253 AATAATTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (20 bp):
TTTTAGTAAAGTTTTAGATA
Found at i:70470649 original size:22 final size:22
Alignment explanation
Indices: 70470623--70470677 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
70470613 ATACATGATT
*
70470623 AATTTTATTGAACTACCTATAA
1 AATTTTATTGAAATACCTATAA
*
70470645 CATTTTATTGAAATACCTATAA
1 AATTTTATTGAAATACCTATAA
70470667 AATTTTATTGA
1 AATTTTATTGA
70470678 TAATTAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (22 bp):
AATTTTATTGAAATACCTATAA
Found at i:70480040 original size:41 final size:41
Alignment explanation
Indices: 70479956--70480118 Score: 226
Period size: 40 Copynumber: 4.0 Consensus size: 41
70479946 TGTCCAGCAC
* *
70479956 ATAGCCTGCGGACCTAAAGTCCGGATATTCATTCTCGCA-T
1 ATAGCCTGCGGACCTGAAGTCCGGATATTAATTCTCGCATT
*
70479996 ATAGCCTGCGGACGATGAAGTCCGGATA-TAATTCTCGCATT
1 ATAGCCTGCGGAC-CTGAAGTCCGGATATTAATTCTCGCATT
70480037 ATAGCCTGCGGACCTGAAGTCCGGATA-TAATTCTTCGC-TT
1 ATAGCCTGCGGACCTGAAGTCCGGATATTAATTC-TCGCATT
*
70480077 ATAGCCTACGGACCTGAAGTGCCGGAATATTAATTCTCGCAT
1 ATAGCCTGCGGACCTGAAGT-CCGG-ATATTAATTCTCGCAT
70480119 AATAATATAT
Statistics
Matches: 111, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
40 63 0.57
41 34 0.31
42 7 0.06
43 7 0.06
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (41 bp):
ATAGCCTGCGGACCTGAAGTCCGGATATTAATTCTCGCATT
Found at i:70480057 original size:81 final size:83
Alignment explanation
Indices: 70479956--70480118 Score: 235
Period size: 81 Copynumber: 2.0 Consensus size: 83
70479946 TGTCCAGCAC
* *
70479956 ATAGCCTGCGGACCTAAAGTCCGGATATTCATTC-TCGCATATAGCCTGCGGACGATGAAGT-CC
1 ATAGCCTGCGGACCTAAAGTCCGGATA-TAATTCTTCGCATATAGCCTACGGAC-ATGAAGTGCC
70480019 GG-ATA-TAATTCTCGCATT
64 GGAATATTAATTCTCGCATT
* * *
70480037 ATAGCCTGCGGACCTGAAGTCCGGATATAATTCTTCGCTTATAGCCTACGGACCTGAAGTGCCGG
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTTCGCATATAGCCTACGGACATGAAGTGCCGG
70480102 AATATTAATTCTCGCAT
66 AATATTAATTCTCGCAT
70480119 AATAATATAT
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
80 11 0.15
81 47 0.64
82 3 0.04
83 12 0.16
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (83 bp):
ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTTCGCATATAGCCTACGGACATGAAGTGCCGG
AATATTAATTCTCGCATT
Found at i:70483563 original size:20 final size:20
Alignment explanation
Indices: 70483540--70483577 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
70483530 AATAATTTTT
70483540 AAAATTCAAAATATTTATAA
1 AAAATTCAAAATATTTATAA
*
70483560 AAAATTTAAAATATTTAT
1 AAAATTCAAAATATTTAT
70483578 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTCAAAATATTTATAA
Done.