Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 217 of 290
Found at i:70483584 original size:24 final size:24
Alignment explanation
Indices: 70483551--70483600 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
70483541 AAATTCAAAA
*
70483551 TATTTATAAAAAATTTA-AAATATT
1 TATTTATAAAAAAATTATAAAT-TT
*
70483575 TATTTTTAAAAAAATTATAAATTT
1 TATTTATAAAAAAATTATAAATTT
70483599 TA
1 TA
70483601 AAAAATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TATTTATAAAAAAATTATAAATTT
Found at i:70485470 original size:28 final size:29
Alignment explanation
Indices: 70485437--70485537 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
70485427 TATAGTAAGT
* * *
70485437 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
70485465 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
70485494 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
70485523 CCGCACATTTAGTGC
1 CCGCACACTTAGTGC
70485538 CAATTTCATG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:70493475 original size:30 final size:29
Alignment explanation
Indices: 70493418--70493522 Score: 122
Period size: 30 Copynumber: 3.5 Consensus size: 29
70493408 TATAGTAAGT
*
70493418 CCGCACACTTAGTGTTATA-ATAATTGAAGC
1 CCGCACACTTAGTGCTATACA-AATTGAA-C
* *
70493448 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAAATTGAAC
* *
70493477 CGCACACACTTAGTGCTATACAATTTGAAC
1 C-CGCACACTTAGTGCTATACAAATTGAAC
70493507 CCAGCACACTTAGTGC
1 CC-GCACACTTAGTGC
70493523 CAGATTCCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
29 2 0.03
30 62 0.95
31 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAAATTGAAC
Found at i:70498866 original size:20 final size:20
Alignment explanation
Indices: 70498841--70498887 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
70498831 TGCCCACATT
*
70498841 GGCGTGTCCCAAACCATACG
1 GGCGTGTCCCAAACCACACG
*
70498861 GGCGTGTCCCAAACTACACG
1 GGCGTGTCCCAAACCACACG
70498881 GGCGTGT
1 GGCGTGT
70498888 GACCCTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (20 bp):
GGCGTGTCCCAAACCACACG
Found at i:70500399 original size:155 final size:155
Alignment explanation
Indices: 70500115--70500399 Score: 444
Period size: 155 Copynumber: 1.8 Consensus size: 155
70500105 ATAGGTAAGG
* * *
70500115 TTTGGTATGTTTATCATGGCAAGAATGTACCATTTCATCTTGAGATACAATGCTTGAATGAATCA
1 TTTGGTATGTTTATCATGGAAAGAATATACCATTTCATCTTGAGATACAATGCTTGAATGAATAA
* * * * *
70500180 TTAGAAAGAATCATGTTGGTATTATAATTGTTAAATGTTTTGGTAATGATTTATGATCTGTTTGT
66 TTAGAAAGAATCATGTTGGTATTATAATTGTTAAATATTTTGATAATGATTTAAGATATATTTGT
70500245 TTAAAAGGTATGGCATGTCTTATGT
131 TTAAAAGGTATGGCATGTCTTATGT
* * * *
70500270 TTTGGTATGTTTATCATGGAAAGAATATACCATTTCATTTTGAGATGCAATGTTTGGATGAATAA
1 TTTGGTATGTTTATCATGGAAAGAATATACCATTTCATCTTGAGATACAATGCTTGAATGAATAA
* *
70500335 TTGGAAAGAATCATGTTGGTATTATAATTGTTGAATATTTTGATAATGATTTAAGATATATTTGT
66 TTAGAAAGAATCATGTTGGTATTATAATTGTTAAATATTTTGATAATGATTTAAGATATATTTGT
70500400 GATGATGTCA
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
155 116 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (155 bp):
TTTGGTATGTTTATCATGGAAAGAATATACCATTTCATCTTGAGATACAATGCTTGAATGAATAA
TTAGAAAGAATCATGTTGGTATTATAATTGTTAAATATTTTGATAATGATTTAAGATATATTTGT
TTAAAAGGTATGGCATGTCTTATGT
Found at i:70506176 original size:138 final size:138
Alignment explanation
Indices: 70505995--70506409 Score: 612
Period size: 138 Copynumber: 3.0 Consensus size: 138
70505985 ATATAGATAA
* **
70505995 AATTAATATATAAATTTGA-TCATGGAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
70506059 TAAATAATTATA-TAGATTAATATTGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
66 TAAATAATTATATTA-ATTAAT-TTGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG
*
70506123 AAATAAAT-T
129 AAAAAAATAT
70506132 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
** * * *
70506197 TAAATAATTATATTAATTAATTTCAATCAAAATATAAAAGACATGGAAATTAATATTCATTTGAA
66 TAAATAATTATATTAATTAATTT-GGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTG-G
70506262 AAAAAAATAT
129 AAAAAAATAT
* *
70506272 AATTAATATATGAATTTGATTCATACAAATTATTAA-T-T-T-TATTTTACCAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
*
70506333 TAAAAAATTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGG-
66 TAAATAATTATATTAATTAA-TTTGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGA
*
70506397 AAAGAATAT
130 AAAAAATAT
70506406 AATT
1 AATT
70506410 CCTTTTCAAA
Statistics
Matches: 254, Mismatches: 18, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
134 12 0.05
136 75 0.30
137 24 0.09
138 97 0.38
139 10 0.04
140 36 0.14
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (138 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTAATA
TAAATAATTATATTAATTAATTTGGTCAAAATATAAAAGACATGAAAATTAATATTCTTTTGGAA
AAAAATAT
Found at i:70506477 original size:74 final size:76
Alignment explanation
Indices: 70506385--70506531 Score: 226
Period size: 76 Copynumber: 2.0 Consensus size: 76
70506375 ATGAAAATTA
*
70506385 ATATTCTTTTGGAAAGAATATAATT-C-CTTTTCAAACTTTCCATTTGACTTCTCTATTAATAAG
1 ATATTCTTTTGGAAAGAATATAATTACTCTTTTCAAACTTTCCATTTGACTTCTCTATTAACAAG
70506448 AGAATAATCCT
66 AGAATAATCCT
* * **
70506459 ATATTCTTTTGGAAAGAATATAATTACTTTTTTCTAACTTTCCATTTGTGTTCTCTATTAACAAG
1 ATATTCTTTTGGAAAGAATATAATTACTCTTTTCAAACTTTCCATTTGACTTCTCTATTAACAAG
*
70506524 GGAATAAT
66 AGAATAAT
70506532 AATAGTTCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
74 25 0.38
75 1 0.02
76 39 0.60
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.44
Consensus pattern (76 bp):
ATATTCTTTTGGAAAGAATATAATTACTCTTTTCAAACTTTCCATTTGACTTCTCTATTAACAAG
AGAATAATCCT
Found at i:70533107 original size:8 final size:8
Alignment explanation
Indices: 70533094--70533129 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
70533084 TTTAATAAGA
70533094 TATTTTAT
1 TATTTTAT
70533102 TATTTTAT
1 TATTTTAT
70533110 TATTTTAT
1 TATTTTAT
70533118 TAATATTTAT
1 T-AT-TTTAT
70533128 TA
1 TA
70533130 AGTATAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 17 0.65
9 3 0.12
10 6 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
TATTTTAT
Found at i:70540255 original size:40 final size:40
Alignment explanation
Indices: 70540181--70540402 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
70540171 AACCCAAGTA
* * *
70540181 CCTTCGAGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
70540220 CCTTCGGGTCTTAGCCCGGATACAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70540260 CCTTCGGGACTTAGCCCGGATATAGTCGCTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70540300 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCGCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70540340 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70540380 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
70540403 CATCCGAATA
Statistics
Matches: 160, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 11 0.07
40 148 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:70545927 original size:38 final size:38
Alignment explanation
Indices: 70545876--70545954 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
70545866 CGTAACTGGT
*
70545876 TGTTCTATAAAGGCTGATGTTGGATATACCACAATCTA
1 TGTTCTATAAAGGCTGATGTTGGACATACCACAATCTA
70545914 TGTTCTATAAAGGCTGATGTTGGACATACCACAATCTA
1 TGTTCTATAAAGGCTGATGTTGGACATACCACAATCTA
70545952 TGT
1 TGT
70545955 AGAGGGATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (38 bp):
TGTTCTATAAAGGCTGATGTTGGACATACCACAATCTA
Found at i:70556445 original size:50 final size:51
Alignment explanation
Indices: 70556364--70556477 Score: 158
Period size: 50 Copynumber: 2.3 Consensus size: 51
70556354 GACCATGGCA
* * * * *
70556364 ACAAGAGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
*
70556415 A-AAGTGATAAGTAATAGCTTCGGGTACACTTATCTAATCAAGGACAAATG
1 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
*
70556465 ACAAGTGAAAAGT
1 ACAAGTGATAAGT
70556478 GGTAGCTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
50 44 0.80
51 11 0.20
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
Found at i:70556506 original size:31 final size:31
Alignment explanation
Indices: 70556468--70556616 Score: 201
Period size: 31 Copynumber: 4.8 Consensus size: 31
70556458 ACAAATGACA
*
70556468 AGTGAAAAGTGGTAGCTTTTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
*
70556499 AGTGAAAAGTGGTAGCTTCTGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* *
70556530 AGTGAAAAATGGTAGC-TCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTG-CTACCTGATC
* * *
70556561 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* *
70556592 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCTGCTAC
70556617 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
30 3 0.03
31 100 0.95
32 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
Found at i:70556785 original size:49 final size:46
Alignment explanation
Indices: 70556638--70556805 Score: 156
Period size: 47 Copynumber: 3.6 Consensus size: 46
70556628 GATTTCCGTA
* * ** * * * * *
70556638 TAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCATTGAGATATGTGATTC-GTG
* * * *
70556685 TAAGACTATATCTAGGATATGGCATCATTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCATTGAGATATGTGATTCGTG
* *
70556731 TAAGACCATAGCTGGGCTATGGCATCTATATGTGATATGTGATTTCGTT
1 TAAGACCATAGCTGGGCTATGGCATC-AT-TGAGATATGTGA-TTCGTG
*
70556780 TAAGACCATAGCTGGGCTATGACATC
1 TAAGACCATAGCTGGGCTATGGCATC
70556806 GATAAATGAA
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 24 0.24
47 37 0.36
48 11 0.11
49 30 0.29
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (46 bp):
TAAGACCATAGCTGGGCTATGGCATCATTGAGATATGTGATTCGTG
Found at i:70561144 original size:50 final size:51
Alignment explanation
Indices: 70561083--70561210 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
70561073 GACCATGGCA
* *
70561083 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
70561134 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
70561184 ACAAGTGAAAAGTGGTAGCTTC-GCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
70561211 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
50 52 0.74
51 18 0.26
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:70561223 original size:30 final size:30
Alignment explanation
Indices: 70561187--70561333 Score: 222
Period size: 31 Copynumber: 4.8 Consensus size: 30
70561177 ACAAATGACA
70561187 AGTGAAAAGTGGTAGCTTCGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGCTACCTGATC
70561217 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GCTACCTGATC
* *
70561248 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCG-CTACCTGATC
* *
70561279 AGTGAAAAATGGTAGCTCCGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGCTACCTGATC
*
70561309 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTC-GCTAC
70561334 AAGTGACAAG
Statistics
Matches: 109, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
30 46 0.42
31 63 0.58
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (30 bp):
AGTGAAAAGTGGTAGCTTCGCTACCTGATC
Found at i:70561453 original size:45 final size:45
Alignment explanation
Indices: 70561355--70561471 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
70561345 GATTTCCGTA
* * *
70561355 TAAGACCATATCT-GGATATGGCATCGGTGTGATATATGCTACTG
1 TAAGACCATATCTGGGATATGGCATCGATGAGATATATGATACTG
* * *
70561399 TATAAACCATATCTGGGATATGGCATC-ATGAGATATGTGATTCGTG
1 TA-AGACCATATCTGGGATATGGCATCGATGAGATATATGATAC-TG
* * *
70561445 TAAGACCATAGCTGGGCTATGACATCG
1 TAAGACCATATCTGGGATATGGCATCG
70561472 TAAATGAAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.03
45 41 0.69
46 16 0.27
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (45 bp):
TAAGACCATATCTGGGATATGGCATCGATGAGATATATGATACTG
Found at i:70564176 original size:21 final size:23
Alignment explanation
Indices: 70564146--70564189 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
70564136 TGAAAGTTTC
70564146 TATGAATATTT-GC-TGGAATTA
1 TATGAATATTTGGCATGGAATTA
*
70564167 TATGATTATTTGGCATGGAATTA
1 TATGAATATTTGGCATGGAATTA
70564190 GAGCTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 2 0.10
23 8 0.40
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (23 bp):
TATGAATATTTGGCATGGAATTA
Found at i:70565572 original size:31 final size:31
Alignment explanation
Indices: 70565534--70565709 Score: 237
Period size: 31 Copynumber: 5.7 Consensus size: 31
70565524 ATGACAAGTA
70565534 AAAAGTGGTAG-TTCCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCTT-CGGCTACCTGATCAGTG
**
70565565 AAAAGTGGTAGCTTTTGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
*
70565596 AAAAGTGGTAGCTTCTGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* * *
70565627 AAAAATGGTAGCTCCGACTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
* * * *
70565658 AAAAATTGTAGCTCCAGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
*
70565689 AATAGTGGTAGCTTCGGCTAC
1 AAAAGTGGTAGCTTCGGCTAC
70565710 AAGTGACAAG
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
31 127 0.98
32 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
Found at i:70565649 original size:93 final size:94
Alignment explanation
Indices: 70565533--70565709 Score: 266
Period size: 93 Copynumber: 1.9 Consensus size: 94
70565523 AATGACAAGT
* * * ***
70565533 AAAAAGTGGTAGTTCCGGCTACCTGATCAGTGAAAAGTGGTAGCTTTTGCTACCTGATCAGTGAA
1 AAAAAGTGGTAGCTCCGACTACCTGATCAGTGAAAAATGGTAGCTCCAGCTACCTGATCAGTGAA
*
70565598 AAGTGGTAGCTTCTGCTACCTGATCAGTG
66 AAGTGGTAGCTTCGGCTACCTGATCAGTG
*
70565627 AAAAA-TGGTAGCTCCGACTACCTGATCAGTGAAAAATTGTAGCTCCAGCTACCTGATCAGTGAA
1 AAAAAGTGGTAGCTCCGACTACCTGATCAGTGAAAAATGGTAGCTCCAGCTACCTGATCAGTGAA
*
70565691 TAGTGGTAGCTTCGGCTAC
66 AAGTGGTAGCTTCGGCTAC
70565710 AAGTGACAAG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
93 69 0.93
94 5 0.07
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (94 bp):
AAAAAGTGGTAGCTCCGACTACCTGATCAGTGAAAAATGGTAGCTCCAGCTACCTGATCAGTGAA
AAGTGGTAGCTTCGGCTACCTGATCAGTG
Found at i:70565833 original size:46 final size:49
Alignment explanation
Indices: 70565766--70565890 Score: 193
Period size: 49 Copynumber: 2.6 Consensus size: 49
70565756 TGCTACTGTA
* *
70565766 TAAGACCATATCTGGGATATGGCATC-AT-TGAGATATGTGA-TTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTTCGTG
*
70565812 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTTCGTG
*
70565861 TAAGACCATAGCTGGGCTATGACATCGATA
1 TAAGACCATAGCTGGGCTATGGCATCGATA
70565891 AATGAAGATG
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
46 24 0.33
47 2 0.03
48 11 0.15
49 35 0.49
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTTCGTG
Found at i:70576869 original size:5 final size:5
Alignment explanation
Indices: 70576859--70576889 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
70576849 GAACAAATAT
*
70576859 ATTCG ATTCG ATTCG ATTCA ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
70576890 ATTCCATCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (5 bp):
ATTCG
Found at i:70582315 original size:43 final size:43
Alignment explanation
Indices: 70582243--70582406 Score: 181
Period size: 43 Copynumber: 3.8 Consensus size: 43
70582233 CAATGTCAAC
* * * * * *
70582243 GTCCGAGACGTGGTCTTACATGTAATCAAATATCAATTCCACT
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAAT
*
70582286 GTCCCAGACAG-GGTCTTACACGAAATCAAATA-CGATGGCAAT
1 GTCCCAGAC-GTGGTCTTACACGAAATCAAATATCGATGCCAAT
* *
70582328 GTCCCGGACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAAT
1 GTCCCAGACGTGGTCTTACACG-AAATCA-AATATCGATGCCAAT
* *
70582372 GTCCCAGACGTGGTCTTACACGAAAACACATATCG
1 GTCCCAGACGTGGTCTTACACGAAATCAAATATCG
70582407 GATCCTATGT
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.26
43 41 0.41
44 33 0.33
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACACGAAATCAAATATCGATGCCAAT
Found at i:70582374 original size:44 final size:42
Alignment explanation
Indices: 70582243--70582393 Score: 164
Period size: 44 Copynumber: 3.5 Consensus size: 42
70582233 CAATGTCAAC
* * * * *
70582243 GTCCGAGACGTGGTCTTACATGT-AATCAAATATCAATTCCACT
1 GTCCCAGACGTGGTCTTACACGTAAATC-AA-ATCGATGCCAAT
*
70582286 GTCCCAGACAG-GGTCTTACACG-AAATCAAATACGATGGCAAT
1 GTCCCAGAC-GTGGTCTTACACGTAAATCAAAT-CGATGCCAAT
*
70582328 GTCCCGGACGTGGTCTTACACGTAAATCATAAGTCGATGCCAAT
1 GTCCCAGACGTGGTCTTACACGTAAATCA-AA-TCGATGCCAAT
70582372 GTCCCAGACGTGGTCTTACACG
1 GTCCCAGACGTGGTCTTACACG
70582394 AAAACACATA
Statistics
Matches: 92, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 3 0.03
42 27 0.29
43 28 0.30
44 33 0.36
45 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (42 bp):
GTCCCAGACGTGGTCTTACACGTAAATCAAATCGATGCCAAT
Found at i:70585156 original size:30 final size:30
Alignment explanation
Indices: 70585120--70585180 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
70585110 CATTTAATAC
*
70585120 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
70585150 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
70585180 A
1 A
70585181 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:70592661 original size:21 final size:23
Alignment explanation
Indices: 70592609--70592670 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 23
70592599 ATCTTATTTT
*
70592609 TTATTTATTTATATAATTATTCA
1 TTATTTATTTATATAATTATACA
*
70592632 TTATATTATTTATATTATTATACA
1 TTAT-TTATTTATATAATTATACA
70592656 -T-TTTATTTATA-AATT
1 TTATTTATTTATATAATT
70592671 TTATTAGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 3 0.09
21 9 0.26
22 1 0.03
23 5 0.14
24 17 0.49
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (23 bp):
TTATTTATTTATATAATTATACA
Found at i:70605096 original size:44 final size:44
Alignment explanation
Indices: 70605024--70605574 Score: 773
Period size: 44 Copynumber: 12.5 Consensus size: 44
70605014 AGGACAATGT
* * ** *
70605024 AGATTGAAGATAGCATATTTGGTGTCTCTGTATTATCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
70605068 AGATCAAAGATAGCATATTTGGCATCTCTGTATTGTCAGAGAGT
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
70605112 AGATCGAAGATAGAAAATTTGGCATATCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
70605156 AGATAGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
70605200 AGATCGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAAAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
*
70605244 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTATCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* *
70605288 AGATCGAAGATAGCAGATTTGACATCTCTGTATTGTCACAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* *
70605332 AGATCAAAGATAGCAGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * *
70605376 AGATCGGAGATAGCAGATTT-GCTATCTCTGTATTGTTAGAGAAC
1 AGATCGAAGATAGCAGATTTGGC-ATCTCTGTATTGTCAGAGAGC
* *
70605420 AGATCGAAGATCA-CGGATTTGGCGTCTCTGTATTGTCAGAGAGC
1 AGATCGAAGAT-AGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
70605464 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* * * * * *
70605508 AAATCAAAGATAGGAGATTTGGCATCTCCGTATTATCAGGGAGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
* *
70605552 AGATCGGAGATAACAGATTTGGC
1 AGATCGAAGATAGCAGATTTGGC
70605575 GTTCTTGAGT
Statistics
Matches: 450, Mismatches: 53, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
43 3 0.01
44 444 0.99
45 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGC
Found at i:70605884 original size:15 final size:16
Alignment explanation
Indices: 70605851--70605886 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
70605841 CCATTAACAA
70605851 AGCCCAAAACTCGATT
1 AGCCCAAAACTCGATT
*
70605867 AGCCCAAAATTC-ATT
1 AGCCCAAAACTCGATT
70605882 AGCCC
1 AGCCC
70605887 TATACCCGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.36, C:0.33, G:0.11, T:0.19
Consensus pattern (16 bp):
AGCCCAAAACTCGATT
Found at i:70607246 original size:24 final size:24
Alignment explanation
Indices: 70607192--70607246 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
70607182 TATCTTTTTA
* *
70607192 TTTATTTATTTATATAATTATTCGT
1 TTTA-TTATTTATATAATTATACAT
* *
70607217 TATATTATTTATATTATTATACAT
1 TTTATTATTTATATAATTATACAT
70607241 TTTATT
1 TTTATT
70607247 TATAAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (24 bp):
TTTATTATTTATATAATTATACAT
Found at i:70609022 original size:44 final size:43
Alignment explanation
Indices: 70608815--70609022 Score: 176
Period size: 44 Copynumber: 4.8 Consensus size: 43
70608805 AAAGCTCGTA
* ** *
70608815 CAATGCCAACGTCCCAAACGTGGTCTTACA--TTAATCAAATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAAATCAAA-GT
*
70608857 CAATGCC-ACTGTCCCAGATAG-GGTCTTACACG-AAATCAAA-T
1 CAATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAAATCAAAGT
* ** *
70608898 ACGATGCCAACGTTTCAGACGTGGTCTTACACGTAAATCATAAGT
1 -CAATGCCAACGTCCCAGACGTGGTCTTACACGAAAATCA-AAGT
* * * * *
70608943 CAATGCCAACATTCCGGATGTGGTCTTACATGAAAATCATAAGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAAATCA-AAGT
* *
70608987 CGATGCCAACGTCCCAGACATGGTCTTACACGAAAA
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAAA
70609023 CACATATTAG
Statistics
Matches: 135, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
41 4 0.03
42 46 0.34
43 16 0.12
44 68 0.50
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAAAATCAAAGT
Found at i:70611344 original size:15 final size:15
Alignment explanation
Indices: 70611326--70611367 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
70611316 ATAATAATAC
70611326 TAATAATAATGAGAA
1 TAATAATAATGAGAA
*
70611341 TAAT-ATGAATGATAA
1 TAATAAT-AATGAGAA
*
70611356 TAAAAATAATGA
1 TAATAATAATGA
70611368 ATAATCTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 19 0.83
16 2 0.09
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.29
Consensus pattern (15 bp):
TAATAATAATGAGAA
Found at i:70621281 original size:15 final size:15
Alignment explanation
Indices: 70621261--70621289 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70621251 TTATTCTTAT
70621261 TATTTTAATCATAGC
1 TATTTTAATCATAGC
70621276 TATTTTAATCATAG
1 TATTTTAATCATAG
70621290 TTAGAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.48
Consensus pattern (15 bp):
TATTTTAATCATAGC
Found at i:70626093 original size:22 final size:22
Alignment explanation
Indices: 70626065--70626112 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
70626055 GAATAGTACC
*
70626065 ACACGCCCGTGTGGCTGATGTG
1 ACACGCCCGTGTGGATGATGTG
70626087 ACACGCCCGTGTGGATGATGTG
1 ACACGCCCGTGTGGATGATGTG
70626109 ACAC
1 ACAC
70626113 ACCCATGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (22 bp):
ACACGCCCGTGTGGATGATGTG
Found at i:70627754 original size:40 final size:40
Alignment explanation
Indices: 70627705--70627799 Score: 172
Period size: 40 Copynumber: 2.4 Consensus size: 40
70627695 CGGATGTAAC
*
70627705 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
70627745 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTGTAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
70627785 AACCCGCACGAATGC
1 AACCCGCACGAATGC
70627800 TATGCACATA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:70630345 original size:6 final size:6
Alignment explanation
Indices: 70630336--70630367 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
70630326 CACCGTAAGG
*
70630336 GTAACA GTAACA GTAACA GTAACA GTAGCA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
70630368 CAGGTACAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:70635512 original size:27 final size:27
Alignment explanation
Indices: 70635478--70635655 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70635468 TAAATTGTAC
70635478 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70635505 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70635531 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70635559 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70635587 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70635614 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70635641 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70635656 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70635592 original size:82 final size:81
Alignment explanation
Indices: 70635479--70635634 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70635469 AAATTGTACA
* *
70635479 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70635543 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70635560 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70635625 TGCGAGTTGA
65 TGCGAATTGA
70635635 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70635646 original size:82 final size:81
Alignment explanation
Indices: 70635475--70635655 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70635465 GAGTAAATTG
* *
70635475 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70635540 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70635556 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70635620 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70635638 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70635656 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70643568 original size:27 final size:27
Alignment explanation
Indices: 70643534--70643707 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
70643524 TAAATTGTAC
70643534 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70643561 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70643587 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70643615 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70643643 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70643670 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70643697 AGCACTGAGTG
1 AGCACTAAGTG
70643708 AGCGGACTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70643648 original size:82 final size:81
Alignment explanation
Indices: 70643535--70643690 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70643525 AAATTGTACA
* *
70643535 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70643599 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70643616 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70643681 TGCGAGTTGA
65 TGCGAATTGA
70643691 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70647176 original size:86 final size:85
Alignment explanation
Indices: 70646990--70647166 Score: 211
Period size: 86 Copynumber: 2.1 Consensus size: 85
70646980 AAAAAAATAG
* * * *
70646990 TAAAAAAA-AGAAAAAAAATTTTGCTTCGTGAAATTCAAGTATTATATTGTATTTACCATTTTAG
1 TAAAAAAATA-AAAAAAAATTTTACTTCGTGAAATTCAAGTATTACATTGTAATTACCAATTTAG
70647054 TAGTTTATAAACAAATAGATA
65 TAGTTTATAAACAAATAGATA
* * * * *
70647075 TATATATATACAAAAAAATTATTACTTCGTGAAATTCAAGTATTACATTGTAATTATCAATTTAG
1 TAAAAAAATAAAAAAAAATT-TTACTTCGTGAAATTCAAGTATTACATTGTAATTACCAATTTAG
70647140 TAG-TTA-AAA-AAA-AGTATA
65 TAGTTTATAAACAAATAG-ATA
70647158 TAAAAAAAT
1 TAAAAAAAT
70647167 TCGAAAAAAA
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
82 2 0.03
83 12 0.16
84 3 0.04
85 17 0.22
86 43 0.56
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (85 bp):
TAAAAAAATAAAAAAAAATTTTACTTCGTGAAATTCAAGTATTACATTGTAATTACCAATTTAGT
AGTTTATAAACAAATAGATA
Found at i:70653314 original size:40 final size:40
Alignment explanation
Indices: 70653239--70653458 Score: 306
Period size: 40 Copynumber: 5.6 Consensus size: 40
70653229 AACCCAAGTA
*
70653239 CCTTCGGGAATTAG-CCGGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
* * *
70653278 CCTTCGGGTCTTAGCCCGGATACAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70653318 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70653358 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCGCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70653398 CCTTCGGGACTTAGCCC-GATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70653437 CCTTC-GGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
70653459 CATCCGATAA
Statistics
Matches: 162, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 11 0.07
39 41 0.25
40 110 0.68
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:70661261 original size:40 final size:40
Alignment explanation
Indices: 70661187--70661408 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
70661177 AACCCATGTA
* *
70661187 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
70661226 CCTTCGGGTCTTAGCCCGGATACAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
70661266 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70661306 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCGCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
70661346 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
70661386 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
70661409 CATCCGAGTA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 153 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:70677134 original size:22 final size:22
Alignment explanation
Indices: 70677103--70677156 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
70677093 ATAGTACCAT
* *
70677103 ATGCCCGTGTGGCTTATGTGAC
1 ATGCCCGTGTGACTGATGTGAC
70677125 ACT-CCCGTGTGACTGATGTGAC
1 A-TGCCCGTGTGACTGATGTGAC
70677147 ATGCCCGTGT
1 ATGCCCGTGT
70677157 CATTAACCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.30
Consensus pattern (22 bp):
ATGCCCGTGTGACTGATGTGAC
Found at i:70677605 original size:26 final size:26
Alignment explanation
Indices: 70677569--70677624 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
70677559 TGATACAAAT
70677569 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70677595 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70677621 TGAT
1 TGAT
70677625 GGGAATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70681441 original size:34 final size:34
Alignment explanation
Indices: 70681397--70681464 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
70681387 GAAATACAAA
*
70681397 CCGTAATTCTCAAGTTTACTCGATATCCTCGTTC
1 CCGTAATTCTCAAGTTTACTCAATATCCTCGTTC
*
70681431 CCGTAGTTCTCAAGTTTACTCAATATCCTCGTTC
1 CCGTAATTCTCAAGTTTACTCAATATCCTCGTTC
70681465 ACTTTCTCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (34 bp):
CCGTAATTCTCAAGTTTACTCAATATCCTCGTTC
Found at i:70682006 original size:12 final size:12
Alignment explanation
Indices: 70681981--70682013 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
70681971 AAACCCTAAA
*
70681981 TTTTTCTTT-TC
1 TTTTTCTTTCCC
70681992 TTTTTCTTTCCC
1 TTTTTCTTTCCC
70682004 TTTTTCTTTC
1 TTTTTCTTTC
70682014 TTTCTTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:70684439 original size:24 final size:22
Alignment explanation
Indices: 70684410--70684456 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 22
70684400 AAAGTTTTCC
70684410 TTTATGTACAA-TCTTCAAAAGAAT
1 TTTATGTA-AATTC-TCAAAA-AAT
70684434 TTTATGTAAATTCTCAAAAAAT
1 TTTATGTAAATTCTCAAAAAAT
70684456 T
1 T
70684457 CATTCAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 10 0.45
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (22 bp):
TTTATGTAAATTCTCAAAAAAT
Found at i:70685338 original size:26 final size:24
Alignment explanation
Indices: 70685309--70685371 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 24
70685299 ACTCTTAGTG
70685309 ATTTTAAAATTTATTCTTTTACTTTT
1 ATTTTAAAATTT-TT-TTTTACTTTT
70685335 ATTTTAAGGAATTTTTTTTTACTTTT
1 ATTTTAA--AATTTTTTTTTACTTTT
70685361 ATGATTTAAAA
1 AT--TTTAAAA
70685372 ATGAAAGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
26 21 0.64
27 2 0.06
28 10 0.30
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.60
Consensus pattern (24 bp):
ATTTTAAAATTTTTTTTTACTTTT
Found at i:70685369 original size:28 final size:28
Alignment explanation
Indices: 70685309--70685362 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
70685299 ACTCTTAGTG
70685309 ATTTTAA--AATTTATTCTTTTACTTTT
1 ATTTTAAGGAATTTATTCTTTTACTTTT
70685335 ATTTTAAGGAATTT-TT-TTTTACTTTT
1 ATTTTAAGGAATTTATTCTTTTACTTTT
70685361 AT
1 AT
70685363 GATTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 19 0.73
27 2 0.08
28 5 0.19
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (28 bp):
ATTTTAAGGAATTTATTCTTTTACTTTT
Found at i:70693808 original size:43 final size:43
Alignment explanation
Indices: 70693727--70693944 Score: 158
Period size: 43 Copynumber: 5.1 Consensus size: 43
70693717 TAGATGCTCA
* * * *
70693727 TAAA-CAAGTACAATACCGACATCCCGGACATGGTCTTACATG
1 TAAATCAAATACAATGCCGATATCCCAGACATGGTCTTACATG
* * ** *
70693769 TAATTC-AATATCGATGCCTCTATCCCAGACAGGGTCTTACATG
1 TAAATCAAATA-CAATGCCGATATCCCAGACATGGTCTTACATG
* *
70693812 -AAATCAAATACAATGCCGATGTCCCAGACATGGTCTTACACG
1 TAAATCAAATACAATGCCGATATCCCAGACATGGTCTTACATG
* * * ** * * *
70693854 TAAATCTCAAT-CGAGGCTTATGTCCCAGACACGGTCTTACACG
1 TAAATC-AAATACAATGCCGATATCCCAGACATGGTCTTACATG
* * * * * *
70693897 -AAATCAAATACGATGCCGATGTGCCATACATGGTCTTATACG
1 TAAATCAAATACAATGCCGATATCCCAGACATGGTCTTACATG
70693939 TAAATC
1 TAAATC
70693945 TCAAGGCTTG
Statistics
Matches: 139, Mismatches: 30, Indels: 13
0.76 0.16 0.07
Matches are distributed among these distances:
41 3 0.02
42 66 0.47
43 67 0.48
44 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
TAAATCAAATACAATGCCGATATCCCAGACATGGTCTTACATG
Found at i:70693838 original size:42 final size:42
Alignment explanation
Indices: 70693748--70693944 Score: 182
Period size: 42 Copynumber: 4.6 Consensus size: 42
70693738 AATACCGACA
* * * ** *
70693748 TCCCGGACATGGTCTTACATGTAATTC-AATATCGATGCCTCTA
1 TCCCAGACATGGTCTTACACG-AAATCAAATA-CGATGCCGATG
* * *
70693791 TCCCAGACAGGGTCTTACATGAAATCAAATACAATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAAATACGATGCCGATG
* * **
70693833 TCCCAGACATGGTCTTACACGTAAATCTCAAT-CGAGGCTTATG
1 TCCCAGACATGGTCTTACACG-AAATC-AAATACGATGCCGATG
*
70693876 TCCCAGACACGGTCTTACACGAAATCAAATACGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAAATACGATGCCGATG
* * *
70693918 TGCCATACATGGTCTTATACGTAAATC
1 TCCCAGACATGGTCTTACACG-AAATC
70693945 TCAAGGCTTG
Statistics
Matches: 126, Mismatches: 23, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
41 3 0.02
42 60 0.48
43 60 0.48
44 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATCAAATACGATGCCGATG
Found at i:70693880 original size:85 final size:85
Alignment explanation
Indices: 70693748--70693948 Score: 262
Period size: 85 Copynumber: 2.4 Consensus size: 85
70693738 AATACCGACA
* * * * * *
70693748 TCCCGGACATGGTCTTACATGT-AAT-TCAATATCGATGCCTCTATCCCAGACAGGGTCTTACAT
1 TCCCAGACATGGTCTTACACGTAAATCTC-A-ATCGAGGCCTATATCCCAGACACGGTCTTACAC
70693811 GAAATCAAATACAATGCCGATG
64 GAAATCAAATACAATGCCGATG
* *
70693833 TCCCAGACATGGTCTTACACGTAAATCTCAATCGAGGCTTATGTCCCAGACACGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGTAAATCTCAATCGAGGCCTATATCCCAGACACGGTCTTACACGA
*
70693898 AATCAAATACGATGCCGATG
66 AATCAAATACAATGCCGATG
* * *
70693918 TGCCATACATGGTCTTATACGTAAATCTCAA
1 TCCCAGACATGGTCTTACACGTAAATCTCAA
70693949 GGCTTGTGTC
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
85 96 0.94
86 4 0.04
87 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (85 bp):
TCCCAGACATGGTCTTACACGTAAATCTCAATCGAGGCCTATATCCCAGACACGGTCTTACACGA
AATCAAATACAATGCCGATG
Found at i:70699011 original size:49 final size:49
Alignment explanation
Indices: 70698932--70699163 Score: 302
Period size: 49 Copynumber: 4.7 Consensus size: 49
70698922 TCTATTGTGA
*
70698932 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
70698981 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * * * * *
70699032 GATCACGTTTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
70699081 AGGTCACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
70699131 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
70699164 TGCGTACTAG
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 74 0.47
50 42 0.27
51 40 0.26
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:70702198 original size:46 final size:46
Alignment explanation
Indices: 70702148--70702322 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
70702138 TGTTTGGGCA
*
70702148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
70702194 TCCGAACTCATTGAGTTGAGT-CGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
70702240 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
70702286 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70702323 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 8 0.08
46 87 0.84
47 8 0.08
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70702301 original size:92 final size:93
Alignment explanation
Indices: 70702144--70702314 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
70702134 AGGATGTTTG
* *
70702144 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
70702209 TTGAGT-CGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
70702236 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
70702301 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70702315 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 65 0.90
93 7 0.10
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70705274 original size:15 final size:15
Alignment explanation
Indices: 70705256--70705297 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
70705246 ATCTTGGGTT
*
70705256 TCTTTATCCTGGATC
1 TCTTTATTCTGGATC
* *
70705271 TCTTTATTTTGGATT
1 TCTTTATTCTGGATC
70705286 TCTTTATTCTGG
1 TCTTTATTCTGG
70705298 GTTTTCTATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.12, C:0.17, G:0.14, T:0.57
Consensus pattern (15 bp):
TCTTTATTCTGGATC
Found at i:70705316 original size:29 final size:29
Alignment explanation
Indices: 70705245--70705331 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 29
70705235 CATAGTATCG
* * *
70705245 TATCTTGGGTTTCTTTATCCTGGATCTCTT-
1 TATCTTGGATTTCTTTATTCTGGGT-T-TTC
*
70705275 TATTTTGGATTTCTTTATTCTGGGTTTTC
1 TATCTTGGATTTCTTTATTCTGGGTTTTC
70705304 TATCTTGGATTTCTTTATTC--GGTTTTC
1 TATCTTGGATTTCTTTATTCTGGGTTTTC
70705331 T
1 T
70705332 TGTTATCTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 8 0.16
28 2 0.04
29 20 0.39
30 21 0.41
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGGTTTTC
Found at i:70707739 original size:46 final size:48
Alignment explanation
Indices: 70707688--70707818 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 48
70707678 GATGTTGGGC
*
70707688 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * *
70707735 -TCCGAACTCGTTGAGTTGAGTCCTAGTT--C-GA-GAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-AGG
*
70707780 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70707819 GCGGGATTAC
Statistics
Matches: 68, Mismatches: 7, Indels: 15
0.76 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 1 0.01
45 2 0.03
46 27 0.40
47 26 0.38
49 1 0.01
50 2 0.03
51 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:70709261 original size:102 final size:104
Alignment explanation
Indices: 70709043--70709307 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
70709033 GTTGTACATA
** *
70709043 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
70709108 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
70709147 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
70709211 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
70709249 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
70709308 AATAACGGTT
Statistics
Matches: 147, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
102 54 0.37
103 70 0.48
104 23 0.16
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:70716724 original size:26 final size:26
Alignment explanation
Indices: 70716695--70716746 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
70716685 CTGAAATAAA
*
70716695 AAGGGGTTGCTATGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
70716721 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
70716747 GATTAAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.23, G:0.31, T:0.29
Consensus pattern (26 bp):
AAGGGGTTGCTAAGTGCTGATTCCCC
Found at i:70716767 original size:101 final size:103
Alignment explanation
Indices: 70716516--70716779 Score: 399
Period size: 104 Copynumber: 2.6 Consensus size: 103
70716506 GTTGTACATA
** *
70716516 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* * *
70716581 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAA-GTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
*
70716620 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
70716684 TCTGAAA-TAAAAAGGGGTTGCTATGTGCTGATT-CCCC
65 TCTGAAAGTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
* * *
70716721 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
70716780 AATAACGGTT
Statistics
Matches: 147, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
101 57 0.39
102 25 0.17
103 1 0.01
104 64 0.44
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAAGTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
Found at i:70720984 original size:29 final size:29
Alignment explanation
Indices: 70720898--70720981 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
70720888 CATAGTATCG
* * * *
70720898 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
70720928 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
70720957 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
70720982 TCTTTTATCT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:70720985 original size:14 final size:15
Alignment explanation
Indices: 70720907--70720986 Score: 94
Period size: 15 Copynumber: 5.5 Consensus size: 15
70720897 GTATCTTGGG
*
70720907 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
70720922 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
70720937 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
70720951 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
70720966 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
70720980 TTTCTTT
1 TTTCTTT
70720987 TATCTTTGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 19 0.34
15 33 0.59
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:70723526 original size:46 final size:45
Alignment explanation
Indices: 70723364--70723540 Score: 203
Period size: 46 Copynumber: 3.9 Consensus size: 45
70723354 GATGTTTGGG
70723364 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
** *** * * *
70723409 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-A-A
*
70723456 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA
* * *
70723502 CACCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70723541 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
45 30 0.28
46 48 0.44
47 30 0.28
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA
Found at i:70727606 original size:42 final size:43
Alignment explanation
Indices: 70727517--70727607 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 43
70727507 TGTTTGGGAC
* *
70727517 ATGGCATCGATATGAGAATCGTGTAAGATCATAGCTGTGCTAT
1 ATGGCATCGATATGAGAATCATGTAAGATCATACCTGTGCTAT
70727560 -TGGCATCGATATGAG-ATCCCATGTAAGA-CTATACCTG-G-TAT
1 ATGGCATCGATATGAGAAT--CATGTAAGATC-ATACCTGTGCTAT
70727601 ATGGCAT
1 ATGGCAT
70727608 TGGTATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
41 5 0.12
42 23 0.55
43 14 0.33
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
ATGGCATCGATATGAGAATCATGTAAGATCATACCTGTGCTAT
Found at i:70729048 original size:15 final size:15
Alignment explanation
Indices: 70729028--70729062 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
70729018 TTATTAGAAG
70729028 AAAAAGAAGAAGACA
1 AAAAAGAAGAAGACA
* *
70729043 AAAAAGGAGAAGAGA
1 AAAAAGAAGAAGACA
70729058 AAAAA
1 AAAAA
70729063 AAGGATTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (15 bp):
AAAAAGAAGAAGACA
Found at i:70729064 original size:17 final size:18
Alignment explanation
Indices: 70729032--70729067 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
70729022 TAGAAGAAAA
*
70729032 AGAAGAAGACAAAAAAGG
1 AGAAGAAGAAAAAAAAGG
70729050 AGAAG-AGAAAAAAAAGG
1 AGAAGAAGAAAAAAAAGG
70729067 A
1 A
70729068 TTTGGGATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (18 bp):
AGAAGAAGAAAAAAAAGG
Found at i:70732592 original size:18 final size:18
Alignment explanation
Indices: 70732571--70732620 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
70732561 GGGGTGGGTT
* *
70732571 TTCAGTCGGCGCTGCCCC
1 TTCAGCCGGAGCTGCCCC
70732589 TTCAGCCGGAGCTGCCCC
1 TTCAGCCGGAGCTGCCCC
70732607 TTCAGCCGGAGCTG
1 TTCAGCCGGAGCTG
70732621 GCGCATTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (18 bp):
TTCAGCCGGAGCTGCCCC
Found at i:70734219 original size:93 final size:93
Alignment explanation
Indices: 70734107--70734278 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
70734097 CGCCCATAAG
*
70734107 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
70734171 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
70734200 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70734265 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70734279 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70734273 original size:46 final size:46
Alignment explanation
Indices: 70734100--70734275 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
70734090 TGTAACCCGC
* *
70734100 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
70734146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70734196 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70734239 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70734276 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70755752 original size:22 final size:22
Alignment explanation
Indices: 70755724--70755767 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
70755714 GAACCACTTG
70755724 GAATACTAAGGATACACGGATA
1 GAATACTAAGGATACACGGATA
70755746 GAATACTAAGGATACACGGATA
1 GAATACTAAGGATACACGGATA
70755768 ACTTACCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.18
Consensus pattern (22 bp):
GAATACTAAGGATACACGGATA
Found at i:70755958 original size:55 final size:53
Alignment explanation
Indices: 70755826--70755958 Score: 167
Period size: 53 Copynumber: 2.5 Consensus size: 53
70755816 AACTTACTAT
* * *
70755826 TGCCATGTCTCGACATGGTCTTACATGATATCATTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGAGACCATTGCCTTATGAACTCACCAA
* * * * * *
70755879 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGAGACCATTGCCTTAT-G-AACTCACCAA
70755934 TGCCATGTCTTGACATGGTCTTACA
1 TGCCATGTCTTGACATGGTCTTACA
70755959 CCAATTGCCA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
53 35 0.52
54 1 0.01
55 31 0.46
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGAGACCATTGCCTTATGAACTCACCAA
Found at i:70758889 original size:26 final size:27
Alignment explanation
Indices: 70758839--70758892 Score: 69
Period size: 26 Copynumber: 2.0 Consensus size: 27
70758829 TTGCCTCAAG
70758839 TTCAAATCTTTTTGAGTCATCAAATAT
1 TTCAAATCTTTTTGAGTCATCAAATAT
70758866 TTCAAA-CTTTTGTGA-TCAGT-AAATAT
1 TTCAAATCTTTT-TGAGTCA-TCAAATAT
70758892 T
1 T
70758893 CGGCACTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (27 bp):
TTCAAATCTTTTTGAGTCATCAAATAT
Found at i:70763337 original size:28 final size:28
Alignment explanation
Indices: 70763274--70763455 Score: 258
Period size: 28 Copynumber: 6.5 Consensus size: 28
70763264 ATATTAAGTC
*
70763274 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70763301 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
70763329 TGCACACTTAGTGCTATATATTCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70763357 CGCACGCTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70763385 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70763413 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
70763442 CGTACACTTAGTGC
1 CGCACACTTAGTGC
70763456 CAATCTCATG
Statistics
Matches: 139, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
27 21 0.15
28 100 0.72
29 18 0.13
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70769363 original size:28 final size:28
Alignment explanation
Indices: 70769300--70769480 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
70769290 ATATTAAGTC
*
70769300 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70769327 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70769355 TGCACACTTAGTGCTATAT-ATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70769382 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70769410 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70769438 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
70769467 CGTACACTTAGTGC
1 CGCACACTTAGTGC
70769481 CAATCTCATG
Statistics
Matches: 141, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
27 47 0.33
28 76 0.54
29 18 0.13
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70769385 original size:55 final size:56
Alignment explanation
Indices: 70769300--70769452 Score: 265
Period size: 55 Copynumber: 2.8 Consensus size: 56
70769290 ATATTAAGTC
*
70769300 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
* *
70769355 TGCACACTTAGTGCTATAT-ATCAAACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
70769410 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT
70769453 GTACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
54 3 0.03
55 66 0.72
56 23 0.25
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (56 bp):
CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:70771319 original size:45 final size:45
Alignment explanation
Indices: 70771206--70771467 Score: 354
Period size: 45 Copynumber: 5.9 Consensus size: 45
70771196 TCGAATTCAT
* * *
70771206 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
**
70771248 TCACCAACATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
** * * *
70771293 TCACTAGCATTGTAGCCTGATAGGCTCAAATGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
70771338 TCACCGGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
70771383 TCACCGGCATTATAGCCTGCTAGGCTCATAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
70771428 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
70771468 ATCAAATCCA
Statistics
Matches: 195, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
42 9 0.05
43 14 0.07
44 8 0.04
45 163 0.84
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:70775635 original size:23 final size:23
Alignment explanation
Indices: 70775605--70775650 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
70775595 ATCCCAGATA
70775605 GGTCTTACGCTTAGCACAAGTCG
1 GGTCTTACGCTTAGCACAAGTCG
*
70775628 GGTCTTACGCTTAGCACAGGTCG
1 GGTCTTACGCTTAGCACAAGTCG
70775651 AGCCGATGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (23 bp):
GGTCTTACGCTTAGCACAAGTCG
Found at i:70777862 original size:45 final size:45
Alignment explanation
Indices: 70777765--70778025 Score: 345
Period size: 45 Copynumber: 5.9 Consensus size: 45
70777755 TCAAATTCAT
* * *
70777765 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
70777807 TCACCAGCATTATAGCCTACTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
70777852 TCACCGGCATTGTAGCCTGCTAGGCTCAAATGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
70777897 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
** ** **
70777942 TCACCGATATTATAGCCTGCTAGGCT-GTAGGCCCGAATAACATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
70777986 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
70778026 ATCAAATCCA
Statistics
Matches: 192, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
42 10 0.05
43 13 0.07
44 46 0.24
45 122 0.64
46 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:70783345 original size:23 final size:23
Alignment explanation
Indices: 70783319--70783367 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
70783309 TACTTTTGCT
70783319 CTTC-TAGCATGAACTTGTCTTAC
1 CTTCTTAGCAT-AACTTGTCTTAC
*
70783342 CTTCTTAGTATAACTTGTCTTAC
1 CTTCTTAGCATAACTTGTCTTAC
70783365 CTT
1 CTT
70783368 ACCTTACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.45
Consensus pattern (23 bp):
CTTCTTAGCATAACTTGTCTTAC
Found at i:70801894 original size:27 final size:27
Alignment explanation
Indices: 70801864--70802041 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
70801854 ATATTGAGCC
* *
70801864 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
70801891 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
70801918 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*** ** *
70801946 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
70801973 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
70802000 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
70802027 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70802042 GTACAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.79
28 22 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70801976 original size:55 final size:54
Alignment explanation
Indices: 70801864--70802041 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
70801854 ATATTGAGCC
* * *
70801864 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
* * * *
70801918 CGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTG-C-CGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACGTA--ATCAAAT
* * ** * *
70801973 CGCACTCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-AAAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACGTAA-TCA-AAT
70802027 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70802042 GTACAATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
53 5 0.05
54 52 0.53
55 40 0.41
56 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
Found at i:70809902 original size:27 final size:27
Alignment explanation
Indices: 70809872--70810049 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
70809862 ATATTGAGCC
* *
70809872 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
70809899 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
70809926 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*** ** *
70809954 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
70809981 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
70810008 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
70810035 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70810050 GTACAATTTA
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.02
27 93 0.79
28 22 0.19
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:70809984 original size:55 final size:54
Alignment explanation
Indices: 70809872--70810049 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 54
70809862 ATATTGAGCC
* * *
70809872 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
* * * *
70809926 CGCACACTTAGTGCTACATAGTTAGACTCGCACACTTAGTG-C-CGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCCACGTA--ATCAAAT
* * ** * *
70809981 CGCACTCTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAC-AAAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACGTAA-TCA-AAT
70810035 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70810050 GTACAATTTA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
53 5 0.05
54 52 0.53
55 40 0.41
56 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
Found at i:70814638 original size:40 final size:40
Alignment explanation
Indices: 70814583--70814664 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
70814573 TTTTATCCCA
70814583 TGCTTAGCACATTTTATGGATGAATTTTCCTTTAAATTGG
1 TGCTTAGCACATTTTATGGATGAATTTTCCTTTAAATTGG
70814623 TGCTTAGCACATTTTATGGATGAATTTTCCTTTAAATTGG
1 TGCTTAGCACATTTTATGGATGAATTTTCCTTTAAATTGG
70814663 TG
1 TG
70814665 AATTCGATGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.45
Consensus pattern (40 bp):
TGCTTAGCACATTTTATGGATGAATTTTCCTTTAAATTGG
Found at i:70822024 original size:25 final size:25
Alignment explanation
Indices: 70821996--70822074 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
70821986 GTAATGGCCG
70821996 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
70822021 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
70822043 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
70822068 ATGTGAT
1 ATGTGAT
70822075 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:70822046 original size:47 final size:47
Alignment explanation
Indices: 70821987--70822171 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
70821977 TAGTATGGAG
70821987 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
70822034 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
70822081 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
70822128 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70822172 TCCCGAAGGG
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:70822346 original size:37 final size:37
Alignment explanation
Indices: 70822290--70822368 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70822280 CCGAGCTCTA
* * *
70822290 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70822327 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70822364 AAGAC
1 AAGAC
70822369 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70828091 original size:30 final size:30
Alignment explanation
Indices: 70828055--70828303 Score: 193
Period size: 30 Copynumber: 8.3 Consensus size: 30
70828045 TATCGATCAA
** *
70828055 GAAAAGGGATGGTGTTGACCATCAAACTAC
1 GAAAAGGGATGGTGACGACCATCAAACTAT
**
70828085 GAAAAGGGATGGTGACGACCATTGAACTAT
1 GAAAAGGGATGGTGACGACCATCAAACTAT
* * * * *
70828115 GAAAAGGGATAGCTTTA-G-CTATCGATCTAT
1 GAAAAGGGAT-G-GTGACGACCATCAAACTAT
* ****
70828145 GAAAAGGGATGGCT-TC-ACCTATTGCTCTAT
1 GAAAAGGGATGG-TGACGACC-ATCAAACTAT
* * * * *
70828175 GAAAAGGGACGGCT-TCGGCAATCAAATTAT
1 GAAAAGGGATGG-TGACGACCATCAAACTAT
* * *
70828205 GAAAAGGGATGGTGACGACCATCGAATTAC
1 GAAAAGGGATGGTGACGACCATCAAACTAT
*
70828235 GAAAAGGGATGGTGACGACCATCAAATTAT
1 GAAAAGGGATGGTGACGACCATCAAACTAT
*
70828265 GAAAAGGGATGGTGACGACCATCAAATTAT
1 GAAAAGGGATGGTGACGACCATCAAACTAT
70828295 GAAAAGGGA
1 GAAAAGGGA
70828304 CGTGCTGCCA
Statistics
Matches: 180, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
29 4 0.02
30 171 0.95
31 3 0.02
32 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (30 bp):
GAAAAGGGATGGTGACGACCATCAAACTAT
Found at i:70828124 original size:60 final size:59
Alignment explanation
Indices: 70828055--70828303 Score: 216
Period size: 60 Copynumber: 4.2 Consensus size: 59
70828045 TATCGATCAA
* * *
70828055 GAAAAGGGATGGTGTTGACCATCAAACTACGAAAAGGGATGGTGACGACCATTGAACTAT
1 GAAAAGGGATGGT-TCGACCATCAAACTATGAAAAGGGATGGTGACGACCATCGAACTAT
* * * * * * * **
70828115 GAAAAGGGATAGCTT-TAGCTATCGATCTATGAAAAGGGATGGCT-TC-ACCTATTGCTCTAT
1 GAAAAGGGAT-GGTTCGA-CCATCAAACTATGAAAAGGGATGG-TGACGACC-ATCGAACTAT
* * * * * *
70828175 GAAAAGGGACGGCTTCGGCAATCAAATTATGAAAAGGGATGGTGACGACCATCGAATTAC
1 GAAAAGGGATGG-TTCGACCATCAAACTATGAAAAGGGATGGTGACGACCATCGAACTAT
* * * *
70828235 GAAAAGGGATGGTGACGACCATCAAATTATGAAAAGGGATGGTGACGACCATCAAATTAT
1 GAAAAGGGATGGT-TCGACCATCAAACTATGAAAAGGGATGGTGACGACCATCGAACTAT
70828295 GAAAAGGGA
1 GAAAAGGGA
70828304 CGTGCTGCCA
Statistics
Matches: 151, Mismatches: 29, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
59 7 0.05
60 138 0.91
61 6 0.04
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (59 bp):
GAAAAGGGATGGTTCGACCATCAAACTATGAAAAGGGATGGTGACGACCATCGAACTAT
Found at i:70835403 original size:12 final size:12
Alignment explanation
Indices: 70835386--70835410 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70835376 CTACCATTTG
70835386 TGTATATATATA
1 TGTATATATATA
70835398 TGTATATATATA
1 TGTATATATATA
70835410 T
1 T
70835411 AATATACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTATATATATA
Found at i:70845667 original size:30 final size:30
Alignment explanation
Indices: 70845631--70845701 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
70845621 ATCGACCAAG
*
70845631 AAAAGGGATTGTGACGACCATAAAACTATA
1 AAAAGGGATGGTGACGACCATAAAACTATA
** *
70845661 AAAAGGGATGGTGACGACCATTGAACTATG
1 AAAAGGGATGGTGACGACCATAAAACTATA
70845691 AAAAGGGATGG
1 AAAAGGGATGG
70845702 CTTCAGCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.42, C:0.11, G:0.28, T:0.18
Consensus pattern (30 bp):
AAAAGGGATGGTGACGACCATAAAACTATA
Found at i:70845720 original size:30 final size:30
Alignment explanation
Indices: 70845686--70845791 Score: 108
Period size: 30 Copynumber: 3.5 Consensus size: 30
70845676 GACCATTGAA
*
70845686 CTATGAAAAGGGATGGCTTCAGCTATCTAT
1 CTATGAAAAGGGATGGCTTCGGCTATCTAT
* * * * *
70845716 CTATGAAATA-AGATGGATTTGGCTATTTCT
1 CTATGAAA-AGGGATGGCTTCGGCTATCTAT
* *
70845746 CTATGAAAAGGGATGGCTTCGGCCATCAAAT
1 CTATGAAAAGGGATGGCTTCGGCTATC-TAT
70845777 -TATGAAAAGGGATGG
1 CTATGAAAAGGGATGG
70845792 TGACGATTGT
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
29 1 0.02
30 57 0.95
31 2 0.03
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (30 bp):
CTATGAAAAGGGATGGCTTCGGCTATCTAT
Found at i:70845837 original size:30 final size:30
Alignment explanation
Indices: 70845747--70845849 Score: 109
Period size: 30 Copynumber: 3.4 Consensus size: 30
70845737 GCTATTTCTC
* * *
70845747 TATGAAAAGGGATGGCT-TCGGCCATCAAAT
1 TATGAAAAGGGATGG-TGACGACCATCGAAT
***
70845777 TATGAAAAGGGATGGTGACGATTGTCGAAT
1 TATGAAAAGGGATGGTGACGACCATCGAAT
* *
70845807 TGTGAAAAGGGATGGTGACGACCATTGAAT
1 TATGAAAAGGGATGGTGACGACCATCGAAT
*
70845837 TATGAAAAAGGAT
1 TATGAAAAGGGAT
70845850 AGCTTTGGCT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
29 1 0.02
30 58 0.98
ACGTcount: A:0.36, C:0.10, G:0.30, T:0.24
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAT
Found at i:70849067 original size:14 final size:14
Alignment explanation
Indices: 70849048--70849077 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70849038 ATTTAACCGA
70849048 ATATACATATACTC
1 ATATACATATACTC
*
70849062 ATATACATATATTC
1 ATATACATATACTC
70849076 AT
1 AT
70849078 GAATCATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATACATATACTC
Found at i:70852341 original size:18 final size:18
Alignment explanation
Indices: 70852299--70852342 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
70852289 GTGTTTTTTG
*
70852299 AAAACCATGTTTCCATTA
1 AAAACCCTGTTTCCATTA
70852317 AAAACCCTGTTTCCATTA
1 AAAACCCTGTTTCCATTA
70852335 AAAACCCT
1 AAAACCCT
70852343 TCTTAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.27, G:0.05, T:0.30
Consensus pattern (18 bp):
AAAACCCTGTTTCCATTA
Found at i:70852936 original size:6 final size:6
Alignment explanation
Indices: 70852897--70852971 Score: 55
Period size: 6 Copynumber: 12.2 Consensus size: 6
70852887 TATCAGCACT
* * *
70852897 AGAATT AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
70852946 AGTATC AGGTAA-C AGAATC AAAATC A
1 AGAATC A-G-AATC AGAATC AGAATC A
70852972 TAATTAGTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 3 0.05
6 45 0.82
7 5 0.09
8 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:70852938 original size:31 final size:31
Alignment explanation
Indices: 70852897--70852990 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
70852887 TATCAGCACT
* * *
70852897 AGAATTAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
70852928 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * * *
70852959 AGAATCAAAATCATAATTAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
70852990 A
1 A
70852991 AAATAAAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 56 1.00
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:70853000 original size:31 final size:31
Alignment explanation
Indices: 70852905--70853006 Score: 105
Period size: 31 Copynumber: 3.3 Consensus size: 31
70852895 CTAGAATTAG
* * * * * *
70852905 AATCAGAATCAGAATTAGGTGACAGAATCAG
1 AATCAGAATCAGTATCAGGTAACAAAATAAA
* *
70852936 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAAAATAAA
* *
70852967 AATCATAATTAGTATCAGGTAACAAAATAAA
1 AATCAGAATCAGTATCAGGTAACAAAATAAA
*
70852998 AATTAGAAT
1 AATCAGAAT
70853007 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.50, C:0.12, G:0.16, T:0.23
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAAAATAAA
Found at i:70853462 original size:27 final size:27
Alignment explanation
Indices: 70853415--70853609 Score: 221
Period size: 27 Copynumber: 7.2 Consensus size: 27
70853405 GGGCAAAATG
* * *
70853415 GTAATTTTAGCCC-ACAAGGGTATCTCG
1 GTAATTCTA-CCCTACAAGGGTATTTCA
* * *
70853442 GTAATTCTACCCTATAGGGGTATTTCT
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
70853469 GTAATTCTACCCTACATGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
70853496 GTAATTCTACTCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
70853523 GTATTTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
70853550 GTATTTCTACCCTACAAGGGTGTTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
70853577 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
70853604 GTAATT
1 GTAATT
70853610 TTGTAAATCA
Statistics
Matches: 145, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.02
27 142 0.98
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:70853558 original size:81 final size:81
Alignment explanation
Indices: 70853415--70853609 Score: 257
Period size: 81 Copynumber: 2.4 Consensus size: 81
70853405 GGGCAAAATG
* * * *
70853415 GTAATTTTAGCCC-ACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCTGTAATTCTAC
1 GTAATTCTA-CCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTAC
* *
70853479 CCTACATGGGTATTTTA
65 CCTACAAGGGTATTTCA
* * *
70853496 GTAATTCTACTCTACAAGGGTATTTCAGTATTTCTACCCTATAGGGGTATTTCAGTATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACC
* *
70853561 CTACAAGGGTGTTTCG
66 CTACAAGGGTATTTCA
* *
70853577 GTATTTCTACCCTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATT
70853610 TTGTAAATCA
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 2 0.02
81 96 0.98
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCA
Found at i:70853621 original size:27 final size:27
Alignment explanation
Indices: 70853591--70853907 Score: 253
Period size: 27 Copynumber: 11.7 Consensus size: 27
70853581 TTCTACCCTA
* **
70853591 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*** * **
70853618 CAAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
70853645 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
70853672 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *** *
70853699 CGGGGGTATTTCAATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
70853726 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
70853752 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
70853780 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
70853807 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
70853833 CAAAAGGGTATTTTAGTAATTTTACAAA-
1 C--AAGGGTATTTTGGTAATTTTACAAAT
* * *
70853861 CTAGGGGTATTTTGGTAATTTTATAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
70853889 CAAGGGTATTTTGGCAATT
1 CAAGGGTATTTTGGTAATT
70853908 CTACCCTACA
Statistics
Matches: 242, Mismatches: 43, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.01
27 215 0.89
28 25 0.10
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:70853860 original size:55 final size:54
Alignment explanation
Indices: 70853729--70853907 Score: 295
Period size: 54 Copynumber: 3.3 Consensus size: 54
70853719 CACAAATCAG
* *
70853729 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
70853783 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAC-CAA
*
70853838 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
70853892 GGGTATTTTGGCAATT
1 GGGTATTTTGGTAATT
70853908 CTACCCTACA
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 64 0.56
55 51 0.44
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:70853933 original size:109 final size:109
Alignment explanation
Indices: 70853729--70853934 Score: 297
Period size: 109 Copynumber: 1.9 Consensus size: 109
70853719 CACAAATCAG
*
70853729 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
* * ** **
70853794 TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAA
66 CAATTCTACAAACCAGGGACATTTCAGTAATTTTATAAACAAAA
* *
70853838 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
**
70853903 CAATTCTACCCTA-CAGGGACATTTCAGTAATT
66 CAATTCTA-CAAACCAGGGACATTTCAGTAATT
70853935 CTACCCTGCA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
109 83 0.98
110 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (109 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAAGGGTATTTTGG
CAATTCTACAAACCAGGGACATTTCAGTAATTTTATAAACAAAA
Found at i:70853953 original size:27 final size:27
Alignment explanation
Indices: 70853889--70853971 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
70853879 TTTTATAAAC
** *
70853889 CAAGGGTATTTTGGCAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* *
70853916 C-AGGGACATTTCAGTAATTCTACCCTG
1 CAAGGG-TATTTCAGTAATTCTACCCTA
* *
70853943 CAAGGGTATTTCAGTAATGCTAGCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
70853970 CA
1 CA
70853972 GATATGAGAT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
26 4 0.09
27 37 0.82
28 4 0.09
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:70858341 original size:43 final size:43
Alignment explanation
Indices: 70858172--70858342 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
70858162 ATAGGATTCT
* * * *
70858172 GATATGTGATTTCGTGTAAGACCATGTCTGGGATGTTGGCATC
1 GATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
* * ***
70858215 GAT-TTTATATTTGCATGTAAGACCATGTCTGGGACACCGGCATC
1 GATATTT-GATTT-CATGTAAGACCACGTCTGGGACGTTGGCATC
* * * *
70858259 G-TATTTGATTTCGTGTAAGACC-CTTTCTAGAACAG-TGGCATC
1 GATATTTGATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
*
70858301 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
70858343 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 20, Indels: 16
0.74 0.15 0.12
Matches are distributed among these distances:
42 26 0.26
43 43 0.43
44 31 0.31
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
GATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:70861577 original size:46 final size:44
Alignment explanation
Indices: 70861519--70861695 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 44
70861509 ATATTTGGGC
*
70861519 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
70861563 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
70861612 ATCCGAGCTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
70861656 ACCCCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 A-TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70861696 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 61 0.58
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:70861675 original size:93 final size:93
Alignment explanation
Indices: 70861516--70861687 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
70861506 AGGATATTTG
* ** *
70861516 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATCCCCCAACTCGTTGAG
70861581 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
70861609 GGCATCCGAGCTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAA-CCCCCAAGCTCGTTGA
1 GGCATCCAAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATCCCCCAA-CTCGTTGA
*
70861673 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
70861688 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATCCCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70867828 original size:39 final size:39
Alignment explanation
Indices: 70867635--70867835 Score: 287
Period size: 39 Copynumber: 5.2 Consensus size: 39
70867625 TAATGGAGAA
*
70867635 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGATGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
70867674 TTATATCTGGGCTAAGTCCCAAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
70867713 TTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCAGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
70867752 TTATATCCGGGATAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
70867791 TTATATCCGGGCTAAAGTCCAGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
70867830 TTATAT
1 TTATAT
70867836 TTGGGCTTAA
Statistics
Matches: 144, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
39 133 0.92
40 11 0.08
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:70867847 original size:40 final size:39
Alignment explanation
Indices: 70867634--70867868 Score: 147
Period size: 39 Copynumber: 6.0 Consensus size: 39
70867624 ATAATGGAGA
* * * *
70867634 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGATGGT
1 ATTATATCCGGGCTAAAGTCCAGCAGGC-TTTGTGCTGGT
* * * *
70867673 GTTATATCTGGGCT-AAGTCCCA-AAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAAGT-CCAGCAGGC-TTTGTGCTGGT
* * * * * *
70867712 GTTATATCCGGGCT-AAGTCCCGAAGGAATTCGTGCAGGT
1 ATTATATCCGGGCTAAAGTCCAGCAGG-CTTTGTGCTGGT
* * * * * *
70867751 GTTATATCCGGGAT-AAGTCCCGAAGGCATTCGTACTGGT
1 ATTATATCCGGGCTAAAGTCCAGCAGGC-TTTGTGCTGGT
*
70867790 GTTATATCCGGGCTAAAGTCCAGCAGGCTTTGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCAGCAGGCTTTGTGCTGGT
** * * *
70867829 ATTATATTTGGGCTTAAAGTCCCGCATGCTTTGTGGTGGT
1 ATTATATCCGGGC-TAAAGTCCAGCAGGCTTTGTGCTGGT
70867869 GATTGGATTT
Statistics
Matches: 167, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 129 0.77
40 36 0.22
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (39 bp):
ATTATATCCGGGCTAAAGTCCAGCAGGCTTTGTGCTGGT
Found at i:70871823 original size:56 final size:56
Alignment explanation
Indices: 70871732--70871854 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
70871722 GAGATTGGCG
* * *
70871732 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
70871789 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
70871844 CTGAGTGTGCG
1 CTAAGTGTGCG
70871855 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:70871841 original size:27 final size:28
Alignment explanation
Indices: 70871732--70871854 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
70871722 GAGATTGGCG
* * * *
70871732 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
70871761 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
70871789 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
70871817 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
70871844 CTGAGTGTGCG
1 CTAAGTGTGCG
70871855 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:70871865 original size:27 final size:27
Alignment explanation
Indices: 70871757--70871867 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
70871747 TAAATTGTAC
* * *
70871757 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
70871785 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
70871813 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
70871840 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
70871867 A
1 A
70871868 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:70880005 original size:27 final size:28
Alignment explanation
Indices: 70879923--70880017 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 28
70879913 GAGATTGGCG
* * * *
70879923 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
70879952 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
70879980 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
70880007 CTGAGTGTGCG
1 CTAAGTGTGCG
70880018 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.39
28 21 0.36
29 15 0.25
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:70880028 original size:27 final size:27
Alignment explanation
Indices: 70879948--70880030 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
70879938 TAAATTGTAC
* * *
70879948 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
70879976 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
70880003 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
70880030 A
1 A
70880031 CTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:70885044 original size:28 final size:28
Alignment explanation
Indices: 70885007--70885064 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
70884997 CGTTATCCTT
* * *
70885007 AAAATCGTATATGGTGTAAACTAGTTTA
1 AAAATCGTATATGGCGTAAACCAATTTA
70885035 AAAATCGTATATGGCGTAAACCAATTTA
1 AAAATCGTATATGGCGTAAACCAATTTA
70885063 AA
1 AA
70885065 CTACAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (28 bp):
AAAATCGTATATGGCGTAAACCAATTTA
Found at i:70911800 original size:13 final size:14
Alignment explanation
Indices: 70911781--70911813 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
70911771 CAAACGTCGA
*
70911781 AATTTTCAAACAAT
1 AATTTTCAAAAAAT
70911795 -ATTTTCAAAAAAT
1 AATTTTCAAAAAAT
70911808 AATTTT
1 AATTTT
70911814 GTGAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42
Consensus pattern (14 bp):
AATTTTCAAAAAAT
Found at i:70917608 original size:14 final size:15
Alignment explanation
Indices: 70917591--70917619 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70917581 TCACGAAAAT
70917591 TTCACA-AATATAAA
1 TTCACACAATATAAA
70917605 TTCACACAATATAAA
1 TTCACACAATATAAA
70917620 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACAATATAAA
Found at i:70921997 original size:79 final size:81
Alignment explanation
Indices: 70921861--70922045 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
70921851 TTGAATGATG
* *
70921861 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
70921925 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
70921940 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
70922002 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
70922020 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70922046 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:70922059 original size:40 final size:40
Alignment explanation
Indices: 70921862--70922045 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
70921852 TGAATGATGT
* * * *
70921862 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
70921902 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
70921942 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
70921980 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70922021 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70922046 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Done.