Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 218 of 290
Found at i:70922067 original size:79 final size:79
Alignment explanation
Indices: 70921914--70922078 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
70921904 GGACTAAGAT
* * **
70921914 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
70921979 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
70921993 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
70922056 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70922072 CCGAAGG
1 CCGAAGG
70922079 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:70925314 original size:80 final size:80
Alignment explanation
Indices: 70925181--70925431 Score: 396
Period size: 80 Copynumber: 3.1 Consensus size: 80
70925171 ATTTGAATGA
* *
70925181 TATCCGGGCTCAGACCCGAAGGCATTTGTGCGAGTTGCTATACCTGGGTTAAGACCCAAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCTGGGTTAAGACCCGAAGGCAA
70925246 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
* *
70925261 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATACCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCTGGGTTAAGACCCGAAGGCAA
70925326 TTGTGCTAGTGATTT
66 TTGTGCTAGTGATTT
* * * *
70925341 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCTGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCTGGGTTAAGACCCGAAGGCAA
* * *
70925406 TTGTGCTTGTGGTTA
66 TTGTGCTAGTGATTT
70925421 TATCC-GGCTAA
1 TATCCGGGCTAA
70925432 ATTCCGAAGA
Statistics
Matches: 158, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 6 0.04
80 152 0.96
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCTGGGTTAAGACCCGAAGGCAA
TTGTGCTAGTGATTT
Found at i:70925423 original size:40 final size:40
Alignment explanation
Indices: 70925180--70925431 Score: 274
Period size: 40 Copynumber: 6.3 Consensus size: 40
70925170 CATTTGAATG
* * *
70925180 ATATCCGGGCTCAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * * * *
70925220 ATA-CCTGGGTTAAGACCCAAAGGCAATTGTGCTAGTGATT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * * *
70925260 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * * * *
70925300 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * *
70925340 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* **
70925380 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
70925420 ATATCC-GGCTAA
1 ATATCCGGGCTAA
70925432 ATTCCGAAGA
Statistics
Matches: 169, Mismatches: 41, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
39 8 0.05
40 159 0.94
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
Found at i:70927586 original size:7 final size:7
Alignment explanation
Indices: 70927574--70927599 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
70927564 ATTCTACTTT
70927574 ATTTTCA
1 ATTTTCA
70927581 ATTTTCA
1 ATTTTCA
70927588 ATTTTCA
1 ATTTTCA
70927595 ATTTT
1 ATTTT
70927600 ATTTTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTCA
Found at i:70933618 original size:14 final size:14
Alignment explanation
Indices: 70933599--70933637 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
70933589 AATCAATCAA
70933599 ATTTTCCCAAAAGT
1 ATTTTCCCAAAAGT
70933613 ATTTTCCCAAAAGT
1 ATTTTCCCAAAAGT
70933627 ATTTTCCCAAA
1 ATTTTCCCAAA
70933638 TTTTCTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (14 bp):
ATTTTCCCAAAAGT
Found at i:70935245 original size:42 final size:42
Alignment explanation
Indices: 70935147--70935304 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
70935137 ATCAAGAACA
* ** * * *
70935147 ATGCCGACGTCCCAGACGTGGTATTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACACGGTCTTACACGTAAATCAATA-CG
** *
70935190 ATGCCTCTGTCCCAGACAAGGTCTTACACG-AAATCAGATACG
1 ATGCCGATGTCCCAGACACGGTCTTACACGTAAATCA-ATACG
* *
70935232 ATGCCGATGTCCCAAACACGGTCTTATACGTAAATCTCAAT-CG
1 ATGCCGATGTCCCAGACACGGTCTTACACGTAAA--TCAATACG
* *
70935275 AGGACTG-TGTCCCAGACACGGTCTTACACG
1 ATG-CCGATGTCCCAGACACGGTCTTACACG
70935305 ATGTCACAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
42 32 0.34
43 54 0.58
44 4 0.04
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACACGGTCTTACACGTAAATCAATACG
Found at i:70938694 original size:28 final size:28
Alignment explanation
Indices: 70938661--70938773 Score: 118
Period size: 28 Copynumber: 4.0 Consensus size: 28
70938651 ATTGAATGAC
*
70938661 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * * *
70938689 TATGAAAGTGGTTGGGCCTGATGAGCTA
1 TATGAATGTGATTGGGCCTGATGGGCCA
**
70938717 TATGAATGTGATTGGGCCCAATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * * *
70938745 AATGAATGAGATTAGGCCTAATAGGGCCA
1 TATGAATGTGATTGGGCCTGAT-GGGCCA
70938774 AACAAATATG
Statistics
Matches: 69, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 63 0.91
29 6 0.09
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:70958537 original size:30 final size:30
Alignment explanation
Indices: 70958503--70958563 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70958493 TCCTTAACTC
70958503 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
70958533 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
70958563 A
1 A
70958564 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:70966430 original size:22 final size:19
Alignment explanation
Indices: 70966402--70966443 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
70966392 TGGTTATTTT
70966402 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
70966424 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
70966443 T
1 T
70966444 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:70966501 original size:16 final size:15
Alignment explanation
Indices: 70966475--70966504 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
70966465 TTAGCATCAT
70966475 CTTTTTTTTAATAAG
1 CTTTTTTTTAATAAG
70966490 CTTTTATTTTAATAA
1 CTTTT-TTTTAATAA
70966505 ATTAATAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (15 bp):
CTTTTTTTTAATAAG
Found at i:70967219 original size:10 final size:10
Alignment explanation
Indices: 70967198--70967228 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
70967188 ATTTTTCAAT
70967198 TTATTGAATTA
1 TTATT-AATTA
70967209 TTATTAATTA
1 TTATTAATTA
70967219 TTATTAATTA
1 TTATTAATTA
70967229 AATTTTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.75
11 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (10 bp):
TTATTAATTA
Found at i:70970096 original size:46 final size:46
Alignment explanation
Indices: 70970043--70970142 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
70970033 CAGTGAGGGC
* * * *
70970043 AGGAGAAGTAAAAGTAATTGGAT-AAGGAGTAAACCGTTTGAGAGAG
1 AGGAGAAGAAAAAGCAATTGGATCAAGGA-TAAACCATTTGAGAAAG
*
70970089 AGGAGAAGAAAAAGCAATTGGTTCAAGGATAAACCATTTGAGAAAG
1 AGGAGAAGAAAAAGCAATTGGATCAAGGATAAACCATTTGAGAAAG
70970135 AGGAGAAG
1 AGGAGAAG
70970143 GGATAATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 43 0.90
47 5 0.10
ACGTcount: A:0.46, C:0.06, G:0.31, T:0.17
Consensus pattern (46 bp):
AGGAGAAGAAAAAGCAATTGGATCAAGGATAAACCATTTGAGAAAG
Found at i:70973242 original size:30 final size:30
Alignment explanation
Indices: 70973206--70973263 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
70973196 TCTCTAATTA
70973206 TTTTTGAATTTGTTAGGTAAAAATAGGTTC
1 TTTTTGAATTTGTTAGGTAAAAATAGGTTC
70973236 TTTTTGAATTTGTTAGGTAAAAATAGGT
1 TTTTTGAATTTGTTAGGTAAAAATAGGT
70973264 GGCTGGGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (30 bp):
TTTTTGAATTTGTTAGGTAAAAATAGGTTC
Found at i:70976239 original size:29 final size:28
Alignment explanation
Indices: 70976177--70976266 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 28
70976167 CACATACCTG
*
70976177 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCATTAGGCCCAATCACATT
70976205 TATATGGCCCATTAGGCCCAGATCACATT
1 TATATGGCCCATTAGGCCCA-ATCACATT
* * *
70976234 TATATGGCCCATCATGCACAACTCACATT
1 TATATGGCCCATTAGGCCCAA-TCACATT
70976263 TATA
1 TATA
70976267 GTCATGCTCA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 20 0.36
29 36 0.64
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:70976500 original size:16 final size:16
Alignment explanation
Indices: 70976479--70976521 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
70976469 GTAGTAAAAC
*
70976479 TTTCAGCTTTTC-GATA
1 TTTCAGCTTTTCAG-CA
70976495 TTTCAGCTTTTCAGCA
1 TTTCAGCTTTTCAGCA
70976511 TTTCAGCTTTT
1 TTTCAGCTTTT
70976522 GCCGATCTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 24 0.96
17 1 0.04
ACGTcount: A:0.16, C:0.21, G:0.12, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:70976506 original size:8 final size:8
Alignment explanation
Indices: 70976479--70976521 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
70976469 GTAGTAAAAC
70976479 TTTCAGCT
1 TTTCAGCT
*
70976487 TTTC-GAT
1 TTTCAGCT
70976494 ATTTCAGCT
1 -TTTCAGCT
*
70976503 TTTCAGCA
1 TTTCAGCT
70976511 TTTCAGCT
1 TTTCAGCT
70976519 TTT
1 TTT
70976522 GCCGATCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 2 0.07
8 25 0.86
9 2 0.07
ACGTcount: A:0.16, C:0.21, G:0.12, T:0.51
Consensus pattern (8 bp):
TTTCAGCT
Found at i:70981069 original size:4 final size:4
Alignment explanation
Indices: 70981060--70981085 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
70981050 ATATTTATAT
70981060 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
70981086 CACCTACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:70983965 original size:28 final size:29
Alignment explanation
Indices: 70983933--70983990 Score: 100
Period size: 28 Copynumber: 2.0 Consensus size: 29
70983923 CACATACCTG
70983933 TATATGGCCCACTAGGCCCAA-TCACATT
1 TATATGGCCCACTAGGCCCAATTCACATT
*
70983961 TATATGGCCCATTAGGCCCAATTCACATT
1 TATATGGCCCACTAGGCCCAATTCACATT
70983990 T
1 T
70983991 GTAGTCATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
TATATGGCCCACTAGGCCCAATTCACATT
Found at i:70984246 original size:16 final size:16
Alignment explanation
Indices: 70984205--70984247 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
70984195 GTAGTCAAAC
*
70984205 TTTCGGCTTTTTGGTA
1 TTTCGGCTTTTTGGCA
* *
70984221 TTTTGACTTTTTGGCA
1 TTTCGGCTTTTTGGCA
70984237 TTTCGGCTTTT
1 TTTCGGCTTTT
70984248 GCCGATATAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.07, C:0.14, G:0.21, T:0.58
Consensus pattern (16 bp):
TTTCGGCTTTTTGGCA
Found at i:70997219 original size:28 final size:28
Alignment explanation
Indices: 70997179--70997235 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
70997169 AAACCTTAGC
70997179 TTCCTTAGATGATTAAACATGTTCTAAT
1 TTCCTTAGATGATTAAACATGTTCTAAT
70997207 TTCCTTAGATGATTAAACATGTTCTAAT
1 TTCCTTAGATGATTAAACATGTTCTAAT
70997235 T
1 T
70997236 AAGTACTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (28 bp):
TTCCTTAGATGATTAAACATGTTCTAAT
Found at i:70998301 original size:19 final size:20
Alignment explanation
Indices: 70998277--70998314 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70998267 AAACTTGTCG
70998277 AAAAATT-ATCAAAATTAAT
1 AAAAATTAATCAAAATTAAT
*
70998296 AAAAATTAATTAAAATTAA
1 AAAAATTAATCAAAATTAA
70998315 ACATGTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATTAATCAAAATTAAT
Found at i:70998314 original size:10 final size:10
Alignment explanation
Indices: 70998277--70998314 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
70998267 AAACTTGTCG
70998277 AAAAATT-AT
1 AAAAATTAAT
*
70998286 CAAAATTAAT
1 AAAAATTAAT
70998296 AAAAATTAAT
1 AAAAATTAAT
*
70998306 TAAAATTAA
1 AAAAATTAA
70998315 ACATGTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
9 6 0.24
10 19 0.76
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (10 bp):
AAAAATTAAT
Found at i:71000678 original size:41 final size:40
Alignment explanation
Indices: 71000616--71000784 Score: 150
Period size: 41 Copynumber: 4.2 Consensus size: 40
71000606 AGTCCGACTC
*
71000616 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * * *
71000655 TTAGACTACTAGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * * *
71000695 TTATGACACTGGCTCTAAAAGCCCTTCGAAACTAAGTTTGGTTA
1 TTA-GACACTGGCTC-AAAAGCCCTTCGAGACCAAGCTCGG--A
71000739 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
71000778 TTTAGAC
1 -TTAGAC
71000785 CTGATTAGCA
Statistics
Matches: 103, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
39 5 0.05
40 17 0.17
41 67 0.65
42 10 0.10
43 1 0.01
44 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:71003102 original size:19 final size:20
Alignment explanation
Indices: 71003064--71003103 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
71003054 AGCATTACAT
*
71003064 AACTTGAGATAACATAAAAA
1 AACTTGAGATAAAATAAAAA
*
71003084 AACTT-AGATAAAATCAAAA
1 AACTTGAGATAAAATAAAAA
71003103 A
1 A
71003104 TCATACTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.20
Consensus pattern (20 bp):
AACTTGAGATAAAATAAAAA
Found at i:71003102 original size:20 final size:20
Alignment explanation
Indices: 71003064--71003103 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
71003054 AGCATTACAT
*
71003064 AACTTGAGATAACATAAAAA
1 AACTTGAGATAAAATAAAAA
71003084 AACTT-AGATAAAATCAAAAA
1 AACTTGAGATAAAAT-AAAAA
71003104 TCATACTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.20
Consensus pattern (20 bp):
AACTTGAGATAAAATAAAAA
Found at i:71008224 original size:27 final size:27
Alignment explanation
Indices: 71008194--71008283 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 27
71008184 GTGACTCTGA
71008194 TATATGTGTGCGAGTAAGTCCACATTT
1 TATATGTGTGCGAGTAAGTCCACATTT
* * *
71008221 TATATGT-TG-GCATCGATATGT-GAC-TCTGA
1 TATATGTGTGCG-A--G-TAAGTCCACAT-T-T
71008250 TATATGTGTGCGAGTAAGTCCACATTT
1 TATATGTGTGCGAGTAAGTCCACATTT
71008277 TATATGT
1 TATATGT
71008284 TGGCATCGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 20
0.64 0.08 0.27
Matches are distributed among these distances:
25 1 0.02
26 3 0.06
27 19 0.40
28 8 0.17
29 12 0.26
30 3 0.06
31 1 0.02
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (27 bp):
TATATGTGTGCGAGTAAGTCCACATTT
Found at i:71008449 original size:111 final size:111
Alignment explanation
Indices: 71008172--71008477 Score: 425
Period size: 111 Copynumber: 2.7 Consensus size: 111
71008162 GAAGTATTTG
* *
71008172 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGTTGGCATCGA
1 TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGTTGGCATCGA
* *
71008237 TATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGT
66 TATGTGAC-CTGATATATATGTGCGAGTAAGTCCACATTTTATACGT
* * * ** *
71008284 TGGCATCGATGTATGACTCTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGTTGGCATCAA
1 TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGTTGGCATCGA
* *
71008349 TATGTGACCTGATATATATGTGTGAGTAAGTCCACATTTTCTACGT
66 TATGTGACCTGATATATATGTGCGAGTAAGTCCACATTTTATACGT
* * * *
71008395 TGGTATCAATATGTGACTCTGATATATATGTGTGAGTAA-TACCACATTTAATACGTTGGCATCG
1 TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGT-CCACATTTTATACGTTGGCATCG
*
71008459 ATATGTGATTCTGATATAT
65 ATATGTGA-CCTGATATAT
71008478 GTGTACAAGT
Statistics
Matches: 171, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
110 1 0.01
111 94 0.55
112 76 0.44
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (111 bp):
TGGCATCAATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGTTGGCATCGA
TATGTGACCTGATATATATGTGCGAGTAAGTCCACATTTTATACGT
Found at i:71008455 original size:167 final size:168
Alignment explanation
Indices: 71008172--71008481 Score: 471
Period size: 167 Copynumber: 1.9 Consensus size: 168
71008162 GAAGTATTTG
* * * *
71008172 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGTTGGCATCGA
1 TGGCATCAATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTTATACGTTGGCATCAA
* * * *
71008237 TATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGTTGGCATCGATGTATGACT
66 TATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATATATGACT
71008302 CTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGT
131 CTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGT
* * *
71008340 TGGCATCAATATGTGAC-CTGATATATATGTGTGAGTAAGTCCACATTTTCTACGTTGGTATCAA
1 TGGCATCAATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTTATACGTTGGCATCAA
* * *
71008404 TATGTGACTCTGATATATATGTGTGAGTAA-TACCACATTTAATACGTTGGCATCGATATGTGAT
66 TATGTGACTCTGATATATATGTGCGAGTAAGT-CCACATTTAATACGTTGGCATCGATATATGAC
71008468 TCTGATATATGTGT
130 TCTGATATATGTGT
71008482 ACAAGTAAAA
Statistics
Matches: 127, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
166 1 0.01
167 110 0.87
168 16 0.13
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (168 bp):
TGGCATCAATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTTATACGTTGGCATCAA
TATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATATATGACT
CTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGT
Found at i:71008489 original size:56 final size:56
Alignment explanation
Indices: 71008172--71008481 Score: 453
Period size: 56 Copynumber: 5.6 Consensus size: 56
71008162 GAAGTATTTG
*
71008172 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGT
*
71008228 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGT
* * **
71008284 TGGCATCGATGTATGACTCTGATATATGTGTGCGAGTAAGTCCATGTTTTATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGT
* * * *
71008340 TGGCATCAATATGTGAC-CTGATATATATGTGTGAGTAAGTCCACATTTTCTACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGT
* * * * *
71008395 TGGTATCAATATGTGACTCTGATATATATGTGTGAGTAA-TACCACATTTAATACGT
1 TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGT-CCACATTTTATACGT
*
71008451 TGGCATCGATATGTGATTCTGATATATGTGT
1 TGGCATCGATATGTGACTCTGATATATGTGT
71008482 ACAAGTAAAA
Statistics
Matches: 232, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
55 50 0.22
56 182 0.78
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (56 bp):
TGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATACGT
Found at i:71008513 original size:167 final size:167
Alignment explanation
Indices: 71008171--71008522 Score: 449
Period size: 167 Copynumber: 2.1 Consensus size: 167
71008161 GGAAGTATTT
* * *
71008171 GTGGCATCGATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGTTGGCATCG
1 GTGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTTATACGTTGGCATCA
* * * *
71008236 ATATGTGACTCTGATATATGTGTGCGAGTAAGTCCACATTTTATATGTTGGCATCGATGTATGAC
66 ATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATATATGAC
* * ** **
71008301 TCTGATATATGTGTGCGAGTAAGTCCATGTTTTATAC
131 TCTGATATATGTGTACAAGTAAAACCATGTTAGATAC
* * * *
71008338 GTTGGCATCAATATGTGAC-CTGATATATATGTGTGAGTAAGTCCACATTTTCTACGTTGGTATC
1 G-TGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTTATACGTTGGCATC
* *
71008402 AATATGTGACTCTGATATATATGTGTGAGTAA-TACCACATTTAATACGTTGGCATCGATATGTG
65 AATATGTGACTCTGATATATATGTGCGAGTAAGT-CCACATTTAATACGTTGGCATCGATATATG
* *
71008466 ATTCTGATATATGTGTACAAGTAAAACCCTGTATGAGATA-
129 ACTCTGATATATGTGTACAAGTAAAACCATGT-T-AGATAC
*
71008506 GTGGCATCGTTATGTGA
1 GTGGCATCGATATGTGA
71008523 ATATATGTAA
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
166 1 0.01
167 136 0.86
168 18 0.11
169 3 0.02
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (167 bp):
GTGGCATCGATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTTATACGTTGGCATCA
ATATGTGACTCTGATATATATGTGCGAGTAAGTCCACATTTAATACGTTGGCATCGATATATGAC
TCTGATATATGTGTACAAGTAAAACCATGTTAGATAC
Found at i:71010211 original size:26 final size:26
Alignment explanation
Indices: 71010152--71010203 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
71010142 CAGATTTTAT
* *
71010152 AAATGTCTATTATGCCCTATGAGGTA
1 AAATGACTATTATGCCCTATGAGATA
71010178 AAATGACTATTATGCCCTTATGAGAT
1 AAATGACTATTATGCCC-TATGAGAT
71010204 GTATGACTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (26 bp):
AAATGACTATTATGCCCTATGAGATA
Found at i:71019401 original size:48 final size:48
Alignment explanation
Indices: 71019346--71019442 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
71019336 CCTTATTGAG
71019346 TAAATTAGCCATCCTAAAGATAGTGGGATGGTTGGATGCTTTAATTTC
1 TAAATTAGCCATCCTAAAGATAGTGGGATGGTTGGATGCTTTAATTTC
71019394 TAAATTAGCCATCCTAAAGATAGTGGGATGGTTGGATGCTTTAATTTC
1 TAAATTAGCCATCCTAAAGATAGTGGGATGGTTGGATGCTTTAATTTC
71019442 T
1 T
71019443 TTTAATTTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (48 bp):
TAAATTAGCCATCCTAAAGATAGTGGGATGGTTGGATGCTTTAATTTC
Found at i:71021065 original size:16 final size:18
Alignment explanation
Indices: 71021039--71021071 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
71021029 TGTCTTTTAT
71021039 TATGCAAAAGG-AATGAG
1 TATGCAAAAGGTAATGAG
71021056 TATG-AAAAGGTAATGA
1 TATGCAAAAGGTAATGA
71021072 AAAATGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.27, T:0.21
Consensus pattern (18 bp):
TATGCAAAAGGTAATGAG
Found at i:71021268 original size:15 final size:16
Alignment explanation
Indices: 71021238--71021271 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
71021228 AAGCTAAAGT
*
71021238 AAGTAAATGCAATGGA
1 AAGTAAATGAAATGGA
71021254 AAGTAAAT-AAATGGA
1 AAGTAAATGAAATGGA
71021269 AAG
1 AAG
71021272 GTTCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.56, C:0.03, G:0.24, T:0.18
Consensus pattern (16 bp):
AAGTAAATGAAATGGA
Found at i:71055250 original size:28 final size:28
Alignment explanation
Indices: 71055152--71055252 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 28
71055142 GCCCCCTTTA
* *
71055152 GCCCAATCTCATTCATATGGCCCATCGG
1 GCCCAATCACATTCATATGGCCCATCAG
* *
71055180 GCCCAATAACATTCATATGGACCATCAG
1 GCCCAATCACATTCATATGGCCCATCAG
** * * *
71055208 GCCCAATCATTTTCATGTTGCCCATTAG
1 GCCCAATCACATTCATATGGCCCATCAG
*
71055236 GCCTAATCACATTCATA
1 GCCCAATCACATTCATA
71055253 GTCATGCAAT
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (28 bp):
GCCCAATCACATTCATATGGCCCATCAG
Found at i:71057377 original size:79 final size:80
Alignment explanation
Indices: 71057274--71057443 Score: 272
Period size: 79 Copynumber: 2.1 Consensus size: 80
71057264 ACTAAGATCT
*
71057274 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-A
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTATA
*
71057338 TTCCGGGCTAAG-CCC
66 -ACCGGGCTAAGTCCC
*
71057353 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTATA
*
71057418 ACCGGGCTATGTCCC
66 ACCGGGCTAAGTCCC
*
71057433 GAAAGCATTTG
1 GAAGGCATTTG
71057444 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
79 70 0.83
80 14 0.17
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTATA
ACCGGGCTAAGTCCC
Found at i:71057450 original size:40 final size:40
Alignment explanation
Indices: 71057219--71057443 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
71057209 TTGAATGATG
* * * *
71057219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
71057259 TCCAGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
71057299 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
71057339 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71057378 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
71057419 -CCGGGCTATGTCCCGAAAGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71057444 AACGAGTAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 37 0.23
40 111 0.70
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71057465 original size:79 final size:79
Alignment explanation
Indices: 71057278--71057476 Score: 242
Period size: 79 Copynumber: 2.5 Consensus size: 79
71057268 AGATCTGAAG
** * *
71057278 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCG
*
71057343 GGCTAAGCCCGAAG
66 GGCTAAGCCCGAAA
** *
71057357 GCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACC
1 GCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT-ACC
*
71057421 GGGCTATGTCCCGAAA
65 GGGCTAAG-CCCGAAA
* * *
71057437 GCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 GCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
71057477 TACGTGATTT
Statistics
Matches: 107, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
78 2 0.02
79 81 0.76
80 24 0.22
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
GCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCG
GGCTAAGCCCGAAA
Found at i:71058944 original size:21 final size:21
Alignment explanation
Indices: 71058915--71058954 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
71058905 ACTAAACAAA
*
71058915 AAGTGACTCAAAAATCATCTT
1 AAGTCACTCAAAAATCATCTT
**
71058936 AAGTCACTCTTAAATCATC
1 AAGTCACTCAAAAATCATC
71058955 CATGACCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (21 bp):
AAGTCACTCAAAAATCATCTT
Found at i:71066193 original size:28 final size:28
Alignment explanation
Indices: 71066150--71066250 Score: 148
Period size: 28 Copynumber: 3.6 Consensus size: 28
71066140 TGACCCATTT
** *
71066150 AGGCCCAATCTTATTCGTATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
71066178 AGGCCCAATCACATTCATATGGCGCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
71066206 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
71066234 AGGCCCAATCACATTCA
1 AGGCCCAATCACATTCA
71066251 CAGTCATGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:71074819 original size:40 final size:40
Alignment explanation
Indices: 71074775--71074869 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
71074765 TCAATATCTT
* *
71074775 GCACACTAAGTGCCGTACATAGTCGAAGCTATCTCAAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
* * **
71074815 GCACACTAAGTGCCATATATAGCCGAAGCTATGTCGTATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
*
71074855 ACACACTAAGTGCCA
1 GCACACTAAGTGCCA
71074870 CAAATAACCG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATC
Found at i:71094971 original size:40 final size:40
Alignment explanation
Indices: 71094923--71095127 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
71094913 GGACTAAGAT
*
71094923 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
* *
71094963 CCGAAGGCATTTATGCTAGTGACTATACCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
71095003 CCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
71095043 CCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
71095083 CCGAAGGCATTTGTGCGAGTTG-CGATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
71095122 CCGAAG
1 CCGAAG
71095128 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.10
40 132 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:71095049 original size:80 final size:80
Alignment explanation
Indices: 71094911--71095127 Score: 330
Period size: 80 Copynumber: 2.7 Consensus size: 80
71094901 CGGATGATAA
* * *
71094911 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
71094976 TGCTAGTGACTATAC
66 TGCTAGTGACTATAC
* *
71094991 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-CGACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG-CTATATCCGGGCTAAGTCCCGAAGGCATTT
*
71095055 ATGCTAGTGACTATAT
65 ATGCTAGTGACTATAC
* * *
71095071 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCGATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAG
71095128 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
79 15 0.12
80 108 0.87
81 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCGCTATATCCGGGCTAAGTCCCGAAGGCATTTA
TGCTAGTGACTATAC
Found at i:71100280 original size:21 final size:21
Alignment explanation
Indices: 71100256--71100297 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
71100246 TCATCAGATC
*
71100256 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
71100277 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
71100298 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:71129151 original size:47 final size:47
Alignment explanation
Indices: 71129094--71129406 Score: 500
Period size: 47 Copynumber: 6.6 Consensus size: 47
71129084 TGGATAATTG
71129094 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
71129141 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
71129188 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
*
71129237 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
71129284 TGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
* * * * * *
71129331 TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
71129378 TGGATGTGAAAGTGTATAAATGTGATAAG
1 TGAATGTGAAAGTGTATATATGTGATAAG
71129407 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 201 0.82
49 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
Found at i:71129242 original size:143 final size:141
Alignment explanation
Indices: 71129094--71129406 Score: 500
Period size: 143 Copynumber: 2.2 Consensus size: 141
71129084 TGGATAATTG
*
71129094 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
* *
71129159 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGA
* *
71129224 ATGGCCGATGTGA
129 ATGGCCAACGTGA
71129237 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
71129302 TATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
66 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAAT
71129367 GGCCAACGTGA
131 GGCCAACGTGA
* *
71129378 TGGATGTGAAAGTGTATAAATGTGATAAG
1 TGAATGTGAAAGTGTATATATGTGATAAG
71129407 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
141 54 0.34
143 104 0.66
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAAT
GGCCAACGTGA
Found at i:71132815 original size:58 final size:56
Alignment explanation
Indices: 71132667--71132816 Score: 131
Period size: 56 Copynumber: 2.6 Consensus size: 56
71132657 AGTGTATAAC
* * * * *
71132667 AGGATTACCAATCCTGGCTAAATCCTTTATATAACATATGCTCAAAAAGTTACATT
1 AGGATTACTAGTCCAGGCTAAATCCTTTCTATAACATATACTCAAAAAGTTACATT
* * * * * * *
71132723 AGGGTTACTAGTCCAGGCTAAACCCTAATC-ATAACATATACTCGAGAGGTATTATATT
1 AGGATTACTAGTCCAGGCTAAATCCT-TTCTATAACATATACTCAAAAAG--TTACATT
* * *
71132781 AGGATTAGTCGTCCGGGCTAAATCCTTTCTATAACA
1 AGGATTACTAGTCCAGGCTAAATCCTTTCTATAACA
71132817 AGGTTACTAG
Statistics
Matches: 72, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
56 36 0.50
57 3 0.04
58 33 0.46
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (56 bp):
AGGATTACTAGTCCAGGCTAAATCCTTTCTATAACATATACTCAAAAAGTTACATT
Found at i:71147139 original size:21 final size:22
Alignment explanation
Indices: 71147113--71147167 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
71147103 ACGGCCTCCA
**
71147113 ACACGGGCGTGTCCC-AGGGTC
1 ACACGGGCGTGTCCCTAGGACC
* *
71147134 ACACGGGCATGTCCCTTGGACC
1 ACACGGGCGTGTCCCTAGGACC
71147156 ACACGGGCGTGT
1 ACACGGGCGTGT
71147168 GAGCCCTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 14 0.50
22 14 0.50
ACGTcount: A:0.16, C:0.33, G:0.35, T:0.16
Consensus pattern (22 bp):
ACACGGGCGTGTCCCTAGGACC
Found at i:71154743 original size:14 final size:15
Alignment explanation
Indices: 71154726--71154754 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
71154716 ACATGAAAAT
71154726 TTCACACAT-ATAAA
1 TTCACACATAATAAA
71154740 TTCACACATAATAAA
1 TTCACACATAATAAA
71154755 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:71160022 original size:34 final size:33
Alignment explanation
Indices: 71159979--71160049 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
71159969 TGTGTTTTCG
*
71159979 TACTGTACTGAAATGGGCTAAGGCCCAGACTGC
1 TACTGTACTGAAATGGACTAAGGCCCAGACTGC
* * *
71160012 TACTGATACTGTAATGGACTCAGGCCCAGACTGT
1 TACTG-TACTGAAATGGACTAAGGCCCAGACTGC
71160046 TACT
1 TACT
71160050 ACTCTTGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 5 0.15
34 28 0.85
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (33 bp):
TACTGTACTGAAATGGACTAAGGCCCAGACTGC
Found at i:71166019 original size:43 final size:42
Alignment explanation
Indices: 71165953--71166105 Score: 130
Period size: 43 Copynumber: 3.6 Consensus size: 42
71165943 ATATTGTACA
* * * *
71165953 ATGCCAACGTCCCAAACGTGGTCTTATATGCAATCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTATA-GCAATCAAATATCG
* * * *
71165996 ATGCCACTGTCCCAGACAGGGTCTT-TAACGAATCAAATA-CA
1 ATGCCAATGTCCCAGACATGGTCTTATAGC-AATCAAATATCG
* * * * *
71166037 ATGCCAATGTTCTAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTATA-GCAATCAAATATCG
* *
71166080 ATGCCAATTTCCCAGAGATGGTCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
71166106 CATGAGAACA
Statistics
Matches: 85, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
41 23 0.27
42 19 0.22
43 43 0.51
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTATAGCAATCAAATATCG
Found at i:71166118 original size:43 final size:43
Alignment explanation
Indices: 71165990--71166121 Score: 112
Period size: 43 Copynumber: 3.1 Consensus size: 43
71165980 ATGCAATCAT
* * * * *
71165990 ATATCGATGCCACTGTCCCAGACAGGGTCTTTA-ACG-AATCAA
1 ATATCGATGCCAATGTTCCAGACATGGTC-TTACACGTAAACAC
* * *
71166032 ATA-CAATGCCAATGTTCTAGACATGGTCTTACACGTAATCAC
1 ATATCGATGCCAATGTTCCAGACATGGTCTTACACGTAAACAC
* *
71166074 ATATCGATGCCAAT-TTCCCAGAGATGGTCTTACATG-AGAACAC
1 ATATCGATGCCAATGTT-CCAGACATGGTCTTACACGTA-AACAC
71166117 ATATC
1 ATATC
71166122 AGAAATCCTA
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
40 3 0.04
41 23 0.31
42 14 0.19
43 34 0.46
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
ATATCGATGCCAATGTTCCAGACATGGTCTTACACGTAAACAC
Found at i:71167742 original size:42 final size:42
Alignment explanation
Indices: 71167683--71167769 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
71167673 TTTATTATTC
71167683 ACATTATTCAACTCAGTCCAATAATCATACTATGGAAAAATT
1 ACATTATTCAACTCAGTCCAATAATCATACTATGGAAAAATT
71167725 ACATTATTCAACTCAGTCCAATAATCATACTATGGAAAAATT
1 ACATTATTCAACTCAGTCCAATAATCATACTATGGAAAAATT
71167767 ACA
1 ACA
71167770 CTTTTTCCCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.30
Consensus pattern (42 bp):
ACATTATTCAACTCAGTCCAATAATCATACTATGGAAAAATT
Found at i:71180383 original size:93 final size:93
Alignment explanation
Indices: 71180256--71180426 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71180246 CCCATAAGTG
* *
71180256 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAAC
71180321 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* * * *
71180349 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAAC
*
71180414 GAGTTCGGATGCC
66 GAGCTCGGATGCC
71180427 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:71180422 original size:46 final size:46
Alignment explanation
Indices: 71180249--71180422 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
71180239 TAACCCGCCC
* * *
71180249 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
* * *
71180295 ATAAATGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCATCT
* * *
71180345 CTCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
*
71180388 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71180423 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 1 0.01
46 60 0.57
47 26 0.25
49 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCT
Found at i:71185882 original size:93 final size:93
Alignment explanation
Indices: 71185770--71185941 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
71185760 GCCCATAAGT
* *
71185770 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71185835 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71185863 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71185928 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
71185942 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71185937 original size:46 final size:46
Alignment explanation
Indices: 71185762--71185937 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71185752 TGTAACCCGC
* *
71185762 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71185808 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
71185854 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71185901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71185938 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71187545 original size:28 final size:27
Alignment explanation
Indices: 71187505--71187566 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
71187495 AAGTCTATTT
71187505 ACTAAGCCATTTTTCCACCCTTACTTGC
1 ACTAA-CCATTTTTCCACCCTTACTTGC
71187533 ACTAACCATTTTTCCACCCTTACTTGC
1 ACTAACCATTTTTCCACCCTTACTTGC
71187560 ACTAACC
1 ACTAACC
71187567 TACACAACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 29 0.85
28 5 0.15
ACGTcount: A:0.24, C:0.37, G:0.05, T:0.34
Consensus pattern (27 bp):
ACTAACCATTTTTCCACCCTTACTTGC
Found at i:71188428 original size:58 final size:58
Alignment explanation
Indices: 71188354--71188469 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
71188344 CCAATGCCAT
71188354 ATCCCAGATATGGTCTTACATGGGATCTCATATCAATGCCAATAGCCCAGCTATGGTC
1 ATCCCAGATATGGTCTTACATGGGATCTCATATCAATGCCAATAGCCCAGCTATGGTC
* *
71188412 ATCCTAGATATGGTCTTACATGGGATCTCATATCAATGCTAATAGCCCAGCTATGGTC
1 ATCCCAGATATGGTCTTACATGGGATCTCATATCAATGCCAATAGCCCAGCTATGGTC
71188470 TTACACGAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (58 bp):
ATCCCAGATATGGTCTTACATGGGATCTCATATCAATGCCAATAGCCCAGCTATGGTC
Found at i:71188524 original size:42 final size:42
Alignment explanation
Indices: 71188412--71188526 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
71188402 AGCTATGGTC
***
71188412 ATCCTAGATATGGTCTTACATGGGATCTCATATCAATGCTAAT
1 ATCCTAGATATGGTCTTACA-CAAATCTCATATCAATGCTAAT
* * * *
71188455 AGCCCAGCTATGGTCTTACACGAAATCTCATATCAATG-TCAT
1 ATCCTAGATATGGTCTTACAC-AAATCTCATATCAATGCTAAT
71188497 ATCCTAGATATGGTCTTACACATAATCTCA
1 ATCCTAGATATGGTCTTACACA-AATCTCA
71188527 AATAACCCTA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.02
42 28 0.47
43 31 0.52
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
ATCCTAGATATGGTCTTACACAAATCTCATATCAATGCTAAT
Found at i:71190643 original size:19 final size:19
Alignment explanation
Indices: 71190621--71190658 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
71190611 ATGGACATAT
*
71190621 AAATCTTGATATGACATGA
1 AAATCTTGAGATGACATGA
*
71190640 AAATCTTGAGATGATATGA
1 AAATCTTGAGATGACATGA
71190659 TAATAACTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (19 bp):
AAATCTTGAGATGACATGA
Found at i:71207327 original size:46 final size:45
Alignment explanation
Indices: 71207274--71207449 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
71207264 TATTTGGGCA
71207274 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
71207320 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
71207367 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * **
71207413 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
71207450 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:71207429 original size:93 final size:93
Alignment explanation
Indices: 71207270--71207441 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
71207260 AGGATATTTG
* *
71207270 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
71207335 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
71207363 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71207428 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71207442 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:71213396 original size:26 final size:26
Alignment explanation
Indices: 71213366--71213417 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
71213356 TGAAATGCCC
71213366 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71213392 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71213418 TTTAATTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71220382 original size:40 final size:40
Alignment explanation
Indices: 71220242--71220471 Score: 268
Period size: 40 Copynumber: 5.8 Consensus size: 40
71220232 TGGATGATAA
* * * * **
71220242 CCGGGCTAAGTCCCGAAGGCAATTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
71220282 CCGGGC-AAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
71220321 CCGGGC-AAGTCCTGTAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
71220360 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
71220400 CCGAGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
71220440 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
71220472 AGCTATATCC
Statistics
Matches: 163, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 66 0.40
40 95 0.58
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:71224723 original size:26 final size:26
Alignment explanation
Indices: 71224693--71224748 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
71224683 TGAAATGCCC
71224693 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71224719 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71224745 ATCA
1 ATCA
71224749 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71225731 original size:54 final size:53
Alignment explanation
Indices: 71225602--71225739 Score: 177
Period size: 54 Copynumber: 2.5 Consensus size: 53
71225592 GTTGTCGTTG
71225602 CAAGGGATTTAACCTGGACTGGTAATCCCGACGACATTCTACGAGTTCATATTA
1 CAAGGGATTTAA-CTGGACTGGTAATCCCGACGACATTCTACGAGTTCATATTA
* ** ** * *
71225656 CGAGGGATTTAAACTAAACTGGTAATTTCGACGACATTCTATGAGTTTATATTA
1 CAAGGGATTT-AACTGGACTGGTAATCCCGACGACATTCTACGAGTTCATATTA
*
71225710 CAAGGGATTTAGCTTGGACTGGTAATCCCG
1 CAAGGGATTTAAC-TGGACTGGTAATCCCG
71225740 TCGTAGGAAC
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
53 2 0.03
54 65 0.94
55 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (53 bp):
CAAGGGATTTAACTGGACTGGTAATCCCGACGACATTCTACGAGTTCATATTA
Found at i:71227824 original size:22 final size:22
Alignment explanation
Indices: 71227799--71227844 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
71227789 TGAAATTTTA
71227799 TGGTCTGATTTACATGATTGTT
1 TGGTCTGATTTACATGATTGTT
*
71227821 TGGTCTGATTTGCATGATTGTT
1 TGGTCTGATTTACATGATTGTT
71227843 TG
1 TG
71227845 TGTTTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.09, G:0.26, T:0.50
Consensus pattern (22 bp):
TGGTCTGATTTACATGATTGTT
Found at i:71228157 original size:30 final size:31
Alignment explanation
Indices: 71228121--71228179 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
71228111 TTAAAATCGC
* *
71228121 CCACACGGTCTAGC-ACACGGGCGCGTGAGA
1 CCACACGGCCTACCTACACGGGCGCGTGAGA
*
71228151 CCACACGGCCTACCTACACGGGCGTGTGA
1 CCACACGGCCTACCTACACGGGCGCGTGA
71228180 CCCTCTAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.22, C:0.36, G:0.31, T:0.12
Consensus pattern (31 bp):
CCACACGGCCTACCTACACGGGCGCGTGAGA
Found at i:71229165 original size:22 final size:22
Alignment explanation
Indices: 71229147--71229192 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
71229137 ATGCCGTAGT
71229147 CAGGACAACACATAGCCGTAAA
1 CAGGACAACACATAGCCGTAAA
*
71229169 CAGGACAGCACATAGCCGTAAA
1 CAGGACAACACATAGCCGTAAA
71229191 CA
1 CA
71229193 TCGTAGCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.28, G:0.20, T:0.09
Consensus pattern (22 bp):
CAGGACAACACATAGCCGTAAA
Found at i:71229431 original size:22 final size:23
Alignment explanation
Indices: 71229395--71229456 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
71229385 GCAAATTCGT
*
71229395 TTGGCACACAA-CCATAATTA-GG
1 TTGGCACA-AAGCCATAATAATGG
*
71229417 TTGGCACAGAGCCAT-ATAATGG
1 TTGGCACAAAGCCATAATAATGG
*
71229439 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
71229457 CAGAATAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 4 0.12
22 27 0.82
23 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATAATGG
Found at i:71229657 original size:41 final size:41
Alignment explanation
Indices: 71229600--71229722 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
71229590 TAAAACCCAC
*
71229600 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* * *
71229641 CGGTGGATCTACGATCGTCAAACAACCATGCAATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* * *
71229682 CGGTGGATCCACGGTTGTCAAGGAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
71229723 TTATTCCTCC
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
Found at i:71230003 original size:27 final size:27
Alignment explanation
Indices: 71229973--71230026 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
71229963 GGGTGTTTTG
71229973 GTAAATCTACAAACTAAGGGTATTTCT
1 GTAAATCTACAAACTAAGGGTATTTCT
* * * *
71230000 GTAATTTTATAAACTAATGGTATTTCT
1 GTAAATCTACAAACTAAGGGTATTTCT
71230027 AAAATTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (27 bp):
GTAAATCTACAAACTAAGGGTATTTCT
Found at i:71230074 original size:26 final size:26
Alignment explanation
Indices: 71229988--71230213 Score: 100
Period size: 27 Copynumber: 8.3 Consensus size: 26
71229978 TCTACAAACT
*
71229988 AAGGGTATTTCTGTAATTTTAT-AAA-C
1 AAGGGTA-TTCTATAATTTT-TCAAATC
* * *
71230014 TAATGGTATTTCTAAAATTTTTGAAAGTC
1 -AAGGGTA-TTCTATAATTTTTCAAA-TC
*
71230043 TAGGGTATTCTATAATTTTGT-AAATC
1 AAGGGTATTCTATAATTTT-TCAAATC
* * *
71230069 AGGGGTATTTTTGTAATTTTTCAAATC
1 AAGGGTA-TTCTATAATTTTTCAAATC
* * * *
71230096 AAGGGTATTTTGGTAATTTTACAAGTC
1 AAGGGTATTCT-ATAATTTTTCAAATC
* * *
71230123 GAGGGTATT-TGAGTAATTTTACAAGTC
1 AAGGGTATTCT-A-TAATTTTTCAAATC
* * *
71230150 AAGGGTATTTTGATAATTTTACAAATT
1 AAGGGTATTCT-ATAATTTTTCAAATC
* * * *
71230177 AGGGGTATTTTGGTAATTTTTACAAACC
1 AAGGGTATTCT-ATAATTTTT-CAAATC
*
71230205 AGGGGTATT
1 AAGGGTATT
71230214 TTGGCAATTT
Statistics
Matches: 166, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
26 15 0.09
27 128 0.77
28 22 0.13
29 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
AAGGGTATTCTATAATTTTTCAAATC
Found at i:71230085 original size:27 final size:27
Alignment explanation
Indices: 71230055--71230302 Score: 177
Period size: 27 Copynumber: 9.2 Consensus size: 27
71230045 GGGTATTCTA
*
71230055 TAATTTTGTAAATCAGGGGTATTTTTG
1 TAATTTTGTAAATCAGGGGTATTTTGG
*
71230082 TAATTTT-TCAAATCAAGGGTATTTTGG
1 TAATTTTGT-AAATCAGGGGTATTTTGG
** *
71230109 TAATTTTACAAGTC-GAGGGTA-TTTGAG
1 TAATTTTGTAAATCAG-GGGTATTTTG-G
** * * *
71230136 TAATTTTACAAGTCAAGGGTATTTTGA
1 TAATTTTGTAAATCAGGGGTATTTTGG
** *
71230163 TAATTTTACAAATTAGGGGTATTTTGG
1 TAATTTTGTAAATCAGGGGTATTTTGG
*
71230190 TAATTTT-TACAAACCAGGGGTATTTTGG
1 TAATTTTGT--AAATCAGGGGTATTTTGG
*
71230218 CAATTTTGCT-AATC-GAGGGTATTTTGG
1 TAATTTTG-TAAATCAG-GGGTATTTTGG
* * **
71230245 TAATTTTGTAAACCAAGGGT-TTTCAG
1 TAATTTTGTAAATCAGGGGTATTTTGG
* * * *
71230271 TAATTTTGTAAACCAAGGGTACTTTAG
1 TAATTTTGTAAATCAGGGGTATTTTGG
71230298 TAATT
1 TAATT
71230303 CTACCATACA
Statistics
Matches: 184, Mismatches: 23, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
26 31 0.17
27 126 0.68
28 26 0.14
30 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TAATTTTGTAAATCAGGGGTATTTTGG
Found at i:71230113 original size:54 final size:54
Alignment explanation
Indices: 71230029--71230302 Score: 218
Period size: 54 Copynumber: 5.1 Consensus size: 54
71230019 GTATTTCTAA
* * * * *
71230029 AATTTTTGAAAGTCTAGGGTATTCT-ATAATTTTGTAAATCAGGGGTATTTTTGT
1 AATTTTTCAAA-TCAAGGGTATTTTGGTAATTTTGTAAATCAGGGGTATTTTAGT
** * *
71230083 AATTTTTCAAATCAAGGGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTGAGT
1 AATTTTTCAAATCAAGGGTATTTTGGTAATTTTGTAAATCAG-GGGTATTTTAGT
* * * ** * *
71230137 AATTTTACAAGTCAAGGGTATTTTGATAATTTTACAAATTAGGGGTATTTTGGT
1 AATTTTTCAAATCAAGGGTATTTTGGTAATTTTGTAAATCAGGGGTATTTTAGT
* * * *
71230191 AATTTTTACAAACCAGGGGTATTTTGGCAATTTTGCT-AATC-GAGGGTATTTTGGT
1 AATTTTT-CAAATCAAGGGTATTTTGGTAATTTTG-TAAATCAG-GGGTATTTTAGT
* ** * * *
71230246 AATTTTGT-AAACCAAGGGT-TTTCAGTAATTTTGTAAACCAAGGGTACTTTAGT
1 AATTTT-TCAAATCAAGGGTATTTTGGTAATTTTGTAAATCAGGGGTATTTTAGT
71230299 AATT
1 AATT
71230303 CTACCATACA
Statistics
Matches: 178, Mismatches: 33, Indels: 19
0.77 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 40 0.22
54 93 0.52
55 43 0.24
56 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
AATTTTTCAAATCAAGGGTATTTTGGTAATTTTGTAAATCAGGGGTATTTTAGT
Found at i:71230140 original size:81 final size:81
Alignment explanation
Indices: 71230038--71230277 Score: 210
Period size: 81 Copynumber: 3.0 Consensus size: 81
71230028 AAATTTTTGA
*
71230038 AAGTCTAGGGTATTCT-A-TAATTTTGTAAATCAGGGGTATTTTTGTAATTTTTCAAATCAAGGG
1 AAGTCCAGGGTATT-TGAGTAATTTTGTAAATCAGGGGTATTTTTGTAATTTTTCAAATCAAGGG
71230101 TATTTTGGTAATTTTAC
65 TATTTTGGTAATTTTAC
* ** * * * * *
71230118 AAGTCGAGGGTATTTGAGTAATTTTACAAGTCAAGGGTA-TTTTGATAATTTTACAAATTAGGGG
1 AAGTCCAGGGTATTTGAGTAATTTTGTAAATCAGGGGTATTTTTG-TAATTTTTCAAATCAAGGG
71230182 TATTTTGGTAATTTTTAC
65 TATTTTGGTAA-TTTTAC
* * * *
71230200 AA-ACCAGGGGTATTTTG-GCAATTTTGCT-AATC-GAGGGTATTTTGGTAATTTTGT-AAACCA
1 AAGTCCA-GGGTA-TTTGAGTAATTTTG-TAAATCAG-GGGTATTTTTGTAATTTT-TCAAATCA
**
71230260 AGGGT-TTTCAGTAATTTT
61 AGGGTATTTTGGTAATTTT
71230278 GTAAACCAAG
Statistics
Matches: 128, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
79 1 0.01
80 23 0.18
81 53 0.41
82 43 0.34
83 8 0.06
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
AAGTCCAGGGTATTTGAGTAATTTTGTAAATCAGGGGTATTTTTGTAATTTTTCAAATCAAGGGT
ATTTTGGTAATTTTAC
Found at i:71230223 original size:55 final size:56
Alignment explanation
Indices: 71230071--71230251 Score: 212
Period size: 55 Copynumber: 3.3 Consensus size: 56
71230061 TGTAAATCAG
* * *
71230071 GGGTATTTTTGTAATTTTT-CAAATCAAGGGTATTTTGGTAATTTTAC-AAGTCGA
1 GGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATTAGA
* *
71230125 GGGTA-TTTGAGTAA-TTTTACAAGTCAAGGGTATTTTGATAATTTTACAAATTAG-
1 GGGTATTTTG-GTAATTTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATTAGA
* * * * * *
71230179 GGGTATTTTGGTAATTTTTACAAACCAGGGGTATTTTGGCAATTTTGCTAA-TCGA
1 GGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATTAGA
71230234 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
71230252 GTAAACCAAG
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
53 7 0.06
54 46 0.43
55 55 0.51
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (56 bp):
GGGTATTTTGGTAATTTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATTAGA
Found at i:71230326 original size:27 final size:26
Alignment explanation
Indices: 71230296--71230393 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 26
71230286 AGGGTACTTT
71230296 AGTAATTCTACCATACAGGGGCATTTC
1 AGTAATTCTACC-TACAGGGGCATTTC
*
71230323 AGTAATTCTATCCTACAGGAGCATTTC
1 AGTAATTCTA-CCTACAGGGGCATTTC
*
71230350 AGTAATTCTACCCTACAGGGGTATTTC
1 AGTAATTCTA-CCTACAGGGGCATTTC
*
71230377 AGTAATACTAGCCTACA
1 AGTAATTCTA-CCTACA
71230394 AATATGAGTT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 62 0.97
28 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (26 bp):
AGTAATTCTACCTACAGGGGCATTTC
Found at i:71232696 original size:39 final size:39
Alignment explanation
Indices: 71232637--71232844 Score: 271
Period size: 39 Copynumber: 5.4 Consensus size: 39
71232627 CTGCGGGGCT
71232637 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC
* * ** *
71232676 TTAGCCCGGATATAACACCAGCACAAATGCCTTCGAAAT
1 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC
* * *
71232715 TTAGCCCGGATATAATACCAGTACGAATTCCTTCAGG--
1 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC
*
71232752 -TAGCCCGGATATAATACCAGCACGAATTCCTTCGGGAC
1 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC
* *
71232790 TTAGCCCGGATATAACACCAGCA-GAAATGCCTTCGGGAT
1 TTAGCCCGGATATAATACCAGCACG-AATGCCTTCGGGAC
*
71232829 TTAACCCGGATATAAT
1 TTAGCCCGGATATAAT
71232845 TCTCCATTAT
Statistics
Matches: 146, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
36 34 0.23
38 1 0.01
39 111 0.76
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGAC
Found at i:71232794 original size:75 final size:76
Alignment explanation
Indices: 71232637--71232843 Score: 247
Period size: 75 Copynumber: 2.7 Consensus size: 76
71232627 CTGCGGGGCT
*
71232637 TTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAA
1 TTAGCCCGGATATAATACCAGCACGAATGCCTTCAGGA--TAGCCCGGATATAACACCAGCACAA
*
71232702 ATGCCTTCGAAAT
64 ATGCCTTCGAAAC
* * * *
71232715 TTAGCCCGGATATAATACCAGTACGAATTCCTTCAGG-TAGCCCGGATATAATACCAGCACGAAT
1 TTAGCCCGGATATAATACCAGCACGAATGCCTTCAGGATAGCCCGGATATAACACCAGCACAAAT
* **
71232779 TCCTTCGGGAC
66 GCCTTCGAAAC
* * *
71232790 TTAGCCCGGATATAACACCAGCA-GAAATGCCTTCGGGATTTAACCCGGATATAA
1 TTAGCCCGGATATAATACCAGCACG-AATGCCTTCAGGA--TAGCCCGGATATAA
71232844 TTCTCCATTA
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
74 1 0.01
75 63 0.57
78 47 0.42
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (76 bp):
TTAGCCCGGATATAATACCAGCACGAATGCCTTCAGGATAGCCCGGATATAACACCAGCACAAAT
GCCTTCGAAAC
Found at i:71232838 original size:114 final size:114
Alignment explanation
Indices: 71232638--71232844 Score: 369
Period size: 114 Copynumber: 1.8 Consensus size: 114
71232628 TGCGGGGCTT
71232638 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
71232703 TGCCTTCGAAATTTAGCCCGGATATAATACCAGTACGAATTCCTTCAGG
66 TGCCTTCGAAATTTAACCCGGATATAATACCAGTACGAATTCCTTCAGG
* *
71232752 TAGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAACACCAGCAGAAA
1 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
**
71232817 TGCCTTCGGGATTTAACCCGGATATAAT
66 TGCCTTCGAAATTTAACCCGGATATAAT
71232845 TCTCCATTAT
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 88 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (114 bp):
TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
TGCCTTCGAAATTTAACCCGGATATAATACCAGTACGAATTCCTTCAGG
Found at i:71238523 original size:13 final size:13
Alignment explanation
Indices: 71238507--71238539 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
71238497 ATTAATTCAA
*
71238507 TTAGTTAATTAGT
1 TTAGATAATTAGT
71238520 TTAGATAATTAGT
1 TTAGATAATTAGT
71238533 TTA-ATAA
1 TTAGATAA
71238540 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:71243936 original size:6 final size:6
Alignment explanation
Indices: 71243898--71243955 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
71243888 TCCTCCTATC
* * *
71243898 TTTTTA TTCTTA -TTTTA TTTTATT TTATTTA TTTTTA TTTTTC TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTT-TA TT-TTTA TTTTTA TTTTTA TTTTTA
*
71243947 TTTTCA TTT
1 TTTTTA TTT
71243956 CAATTTTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
5 4 0.10
6 30 0.71
7 6 0.14
8 2 0.05
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:71243950 original size:5 final size:5
Alignment explanation
Indices: 71243899--71243938 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
71243889 CCTCCTATCT
71243899 TTTTA TTCTTA TTTTA TTTTA TTTTA -TTTA TTTTTA TTTT
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTTT
71243939 TCTTTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 4 0.12
5 19 0.59
6 9 0.28
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:71243968 original size:32 final size:32
Alignment explanation
Indices: 71243910--71243970 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
71243900 TTTATTCTTA
* * *
71243910 TTTTATTTTATTTTATTTATTTTTATTTTTCT
1 TTTTATTTTATTTCAATTATTATTATTTTTCT
71243942 TTTTATTTTCATTTCAATT-TTATTATTTT
1 TTTTATTTT-ATTTCAATTATTATTATTTT
71243971 GAAAGACATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 18 0.72
33 7 0.28
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (32 bp):
TTTTATTTTATTTCAATTATTATTATTTTTCT
Found at i:71246649 original size:13 final size:13
Alignment explanation
Indices: 71246633--71246665 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
71246623 TTTAATTGAA
*
71246633 TTAGTTAATTAGT
1 TTAGATAATTAGT
71246646 TTAGATAATTAGT
1 TTAGATAATTAGT
71246659 TTA-ATAA
1 TTAGATAA
71246666 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:71248143 original size:18 final size:18
Alignment explanation
Indices: 71248098--71248136 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
71248088 ACTTGAAAAT
*
71248098 AGTCAAAATTTATTTTTA
1 AGTCAAAATTTATTTCTA
71248116 AGTCAAAATTTATTTCTA
1 AGTCAAAATTTATTTCTA
71248134 AGT
1 AGT
71248137 ATAAATTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (18 bp):
AGTCAAAATTTATTTCTA
Found at i:71250199 original size:6 final size:6
Alignment explanation
Indices: 71250169--71250367 Score: 133
Period size: 6 Copynumber: 32.3 Consensus size: 6
71250159 AAGAAACATT
* * * * *
71250169 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAGA CTCAGGTG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
71250219 AT-AGA ATAAAA ATTAGA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
71250267 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA A-CAAGA ATCAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATC-AGA ATCAGA
* *
71250316 ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
71250366 AT
1 AT
71250368 GTCAATGTAA
Statistics
Matches: 153, Mismatches: 21, Indels: 38
0.72 0.10 0.18
Matches are distributed among these distances:
5 12 0.08
6 120 0.78
7 14 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:71250268 original size:19 final size:19
Alignment explanation
Indices: 71250244--71250336 Score: 100
Period size: 19 Copynumber: 4.6 Consensus size: 19
71250234 GAATCAGAAT
71250244 CAGAATCAGAATTAGGTAA
1 CAGAATCAGAATTAGGTAA
71250263 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG-A--A-T-T-AGGTAA
*
71250288 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATTAGGTAA
71250305 CAAGAATCAGAATTAGGTAA
1 C-AGAATCAGAATTAGGTAA
71250325 CAGAATCAGAAT
1 CAGAATCAGAAT
71250337 CAGTATCAGG
Statistics
Matches: 63, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
17 3 0.05
18 13 0.21
19 22 0.35
20 4 0.06
21 1 0.02
22 2 0.03
23 1 0.02
24 2 0.03
25 15 0.24
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTAA
Found at i:71250272 original size:25 final size:25
Alignment explanation
Indices: 71250238--71250304 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
71250228 AAATTAGAAT
*
71250238 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
71250263 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
71250288 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
71250305 CAAGAATCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:71250299 original size:62 final size:63
Alignment explanation
Indices: 71250233--71250367 Score: 256
Period size: 62 Copynumber: 2.2 Consensus size: 63
71250223 AATAAAAATT
71250233 AGAATCAGAATC-AGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATC
71250295 AGAATCAGAA-CAAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATC
71250357 AGAATCAGAAT
1 AGAATCAGAAT
71250368 GTCAATGTAA
Statistics
Matches: 71, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
61 1 0.01
62 70 0.99
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (63 bp):
AGAATCAGAATCAAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATC
Found at i:71250304 original size:37 final size:37
Alignment explanation
Indices: 71250234--71250367 Score: 98
Period size: 37 Copynumber: 3.4 Consensus size: 37
71250224 ATAAAAATTA
*
71250234 GAATCAGAATCAGAATCAGAATTAGGTAACAGAATCA
1 GAATCAGAATCAGAATCAGAATCAGGTAACAGAATCA
71250271 GAATCAGTATCAGGTAACAGAATCAGAATCA-G-AACAAGAATCA
1 GAATCAG-A--A--T--CAGAATCAGAATCAGGTAAC-AGAATCA
* *
71250314 GAATTAGGTAA-CAGAATCAGAATCA-GTATCAGGTAA-CA
1 GAATCA-G-AATCAGAATCAGAATCAGGTAACA-G-AATCA
71250352 GAATCAGAATCAGAAT
1 GAATCAGAATCAGAAT
71250368 GTCAATGTAA
Statistics
Matches: 80, Mismatches: 4, Indels: 26
0.73 0.04 0.24
Matches are distributed among these distances:
36 2 0.03
37 30 0.38
38 11 0.14
39 2 0.03
40 1 0.01
42 5 0.06
43 13 0.16
44 16 0.20
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (37 bp):
GAATCAGAATCAGAATCAGAATCAGGTAACAGAATCA
Found at i:71250335 original size:25 final size:25
Alignment explanation
Indices: 71250307--71250367 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
71250297 AATCAGAACA
*
71250307 AGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
*
71250332 AGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
71250357 AGAATCAGAAT
1 AGAATCAGAAT
71250368 GTCAATGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:71250364 original size:19 final size:19
Alignment explanation
Indices: 71250269--71250339 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
71250259 GTAACAGAAT
*
71250269 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
71250288 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
71250305 CAAGAATCAGAATTAGGTAA
1 C-AGAATCAGAATCAGGTAA
71250325 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
71250340 TATCAGGTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 3 0.07
18 13 0.28
19 27 0.59
20 3 0.07
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:71250534 original size:27 final size:26
Alignment explanation
Indices: 71250486--71250545 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71250476 GCGGGGCTGC
*
71250486 CAGATATTGTGACGAAGTCACCAGAGA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
71250513 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
71250539 CAGATAT
1 CAGATAT
71250546 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71250592 original size:71 final size:67
Alignment explanation
Indices: 71250513--71250650 Score: 168
Period size: 67 Copynumber: 2.0 Consensus size: 67
71250503 TCACCAGAGA
* * * *
71250513 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGACTGTAACGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGACTGCAACGA
71250578 GGCTGC
62 GGCTGC
* * * *
71250584 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGACTGCAACGAGGCT
71250649 GC
66 GC
71250651 TAGAACGCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 34 0.58
71 25 0.42
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGACTGCAACGAGGCT
GC
Found at i:71250632 original size:27 final size:26
Alignment explanation
Indices: 71250584--71250635 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71250574 ACGAGGCTGC
*
71250584 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
71250610 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
71250636 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71250938 original size:27 final size:27
Alignment explanation
Indices: 71250880--71251101 Score: 257
Period size: 27 Copynumber: 8.3 Consensus size: 27
71250870 GGGGTAAAAT
* * * *
71250880 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71250906 GATAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71250933 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71250960 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71250987 GGTAATTATACCCTACTGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71251014 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71251041 GGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71251068 GGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71251095 AGTAATT
1 GGTAATT
71251102 TTGTAAATCG
Statistics
Matches: 167, Mismatches: 28, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 13 0.08
27 154 0.92
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:71251012 original size:81 final size:81
Alignment explanation
Indices: 71250884--71251101 Score: 298
Period size: 81 Copynumber: 2.7 Consensus size: 81
71250874 TAAAATGGTA
* * * * * *
71250884 ATTT-TACCCCACAA-GGTATCTCGATAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACTGGGGTATTTCAGTAATTCTACCCT
71250947 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* *
71250963 ATTTCTACCCTACAAGGGTATTTCGGTAATTATACCCTACTGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACTGGGGTATTTCAGTAATTCTACCCT
* *
71251028 ACAGGGGTATTTTGGT
66 ACAAGGGTATTTCGGT
* *
71251044 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTA-TAGGGGTATTTCAGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACT-GGGGTATTTCAGTAATT
71251102 TTGTAAATCG
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 4 0.03
80 10 0.08
81 108 0.89
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACTGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:71251116 original size:27 final size:27
Alignment explanation
Indices: 71251086--71251587 Score: 186
Period size: 27 Copynumber: 18.6 Consensus size: 27
71251076 TACCCTATAG
**
71251086 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** ** *
71251113 GGGTAAAAC-GATAATTTTGTAAATCAA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* *
71251140 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
* ** *
71251167 GGGTATTTCAATAATTTTACAGGTTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
71251194 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTCAGTAATTTTACAAATCGA
** *
71251220 GAGGTATTTTGGTAATTTT-CGAAA-CTA
1 G-GGTATTTCAGTAATTTTAC-AAATCGA
* *
71251247 GGGGTATTT-TGATAATTTTACAAA-CTA
1 -GGGTATTTCAG-TAATTTTACAAATCGA
** *
71251274 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTACAAATCGA
** * * * *
71251301 GGGGTATTTTGGTAAATTTATAAACCAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
* *
71251329 GGGTATTTTAGTAATTTTACAAA-CTA
1 GGGTATTTCAGTAATTTTACAAATCGA
** *** * *
71251355 GGGGTATTTTGGTAATTTGGTAAACCAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
* *
71251383 GGGTATTTTAGTAATTTTACAAA-CCA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * * *
71251409 GGGGTA-TTCTGGTGATTTTATAAACCAA
1 -GGGTATTTC-AGTAATTTTACAAATCGA
* * *
71251437 GGGTATTTTAGGAATTTTACAAA-CCA
1 GGGTATTTCAGTAATTTTACAAATCGA
** ** * *
71251463 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
** *
71251491 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * * * *
71251517 GGGGTATTTTGGTGATTTTATAAACCAA
1 -GGGTATTTCAGTAATTTTACAAATCGA
* *
71251545 GGGTATTTTAGTAATTTTACAAA-CCA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
71251571 GGGGTATTTTAGTAATT
1 -GGGTATTTCAGTAATT
71251588 CGGTAAACTA
Statistics
Matches: 384, Mismatches: 68, Indels: 46
0.77 0.14 0.09
Matches are distributed among these distances:
26 21 0.05
27 347 0.90
28 16 0.04
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:71251595 original size:27 final size:27
Alignment explanation
Indices: 71251194--71251587 Score: 477
Period size: 27 Copynumber: 14.6 Consensus size: 27
71251184 TACAGGTTGA
** * *
71251194 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
71251221 AGGTATTTTGGTAATTTT-CGAAACTAG
1 GGGTATTTTGGTAATTTTAC-AAACCAG
* *
71251248 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71251275 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
71251302 GGGTATTTTGGTAAATTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
71251329 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*** *
71251356 GGGTATTTTGGTAATTTGGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71251383 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
71251410 GGGTATTCTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
71251437 GGGTATTTTAGG-AATTTTACAAACCAG
1 GGGTATTTT-GGTAATTTTACAAACCAG
** *
71251464 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
71251491 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
71251518 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71251545 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
71251572 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
71251588 CGGTAAACTA
Statistics
Matches: 312, Mismatches: 51, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
26 3 0.01
27 306 0.98
28 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:71251595 original size:54 final size:54
Alignment explanation
Indices: 71251222--71251587 Score: 545
Period size: 54 Copynumber: 6.8 Consensus size: 54
71251212 ACAAATCAGA
* * * * * *
71251222 GGTATTTTGGTAATTTT-CGAAACTAGGGGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTAGTAATTTTAC-AAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* * *
71251276 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAAATTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* **
71251330 GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTGGTAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
71251384 GGTATTTTAGTAATTTTACAAACCAGGGGTATTCTGGTGATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
71251438 GGTATTTTAGGAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
71251492 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
*
71251546 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTAGTAATT
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATT
71251588 CGGTAAACTA
Statistics
Matches: 286, Mismatches: 25, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
54 285 1.00
55 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
Found at i:71253611 original size:6 final size:6
Alignment explanation
Indices: 71253565--71253756 Score: 160
Period size: 6 Copynumber: 31.3 Consensus size: 6
71253555 AAGAAACATT
* * * *
71253565 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAAA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
71253612 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATTAGGTA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
71253664 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAAA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* *
71253712 ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGA ATTAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
71253757 GTCAATGCAA
Statistics
Matches: 149, Mismatches: 23, Indels: 28
0.75 0.12 0.14
Matches are distributed among these distances:
5 8 0.05
6 124 0.83
7 11 0.07
8 6 0.04
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:71253621 original size:25 final size:25
Alignment explanation
Indices: 71253592--71253706 Score: 162
Period size: 25 Copynumber: 4.6 Consensus size: 25
71253582 AATGAGAATT
* *
71253592 AGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
71253617 AGAATCAAAATCAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
*
71253641 AGAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
71253666 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
71253691 AGAATCAGAATCAGAA
1 AGAATCAGAATCAGAA
71253707 CCAAAATCAG
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
23 1 0.01
24 19 0.23
25 59 0.73
26 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:71253629 original size:49 final size:49
Alignment explanation
Indices: 71253576--71253706 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
71253566 TCAGAACTAG
* * *
71253576 AATCAAAATGAGAATTAGAATCAAAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAATCAGAATCAGAATCAAAATCAGAATCAGGTAACAGAATCAA
* * * *
71253625 AATCAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAAAATCAGAATCAGAATCAAAATCAGAATCAGGTAACAGAATCAA
** *
71253674 AATCAGTATCAGGTAA-CAGAATCAGAATCAGAA
1 AATCAAAATCA-G-AATCAGAATCAAAATCAGAA
71253707 CCAAAATCAG
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
49 52 0.72
50 18 0.25
51 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (49 bp):
AATCAAAATCAGAATCAGAATCAAAATCAGAATCAGGTAACAGAATCAA
Found at i:71253635 original size:37 final size:37
Alignment explanation
Indices: 71253586--71253756 Score: 204
Period size: 37 Copynumber: 4.6 Consensus size: 37
71253576 AATCAAAATG
* * *
71253586 AGAATTAGAATCAAAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
71253623 AAAATCAGAATCAGAATCAGAATCA-G-AATCAGAATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-CAGAATC
*
71253659 AGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
71253697 AGAATCAGAACCAAAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
*
71253734 AGAATCAGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGAAT
71253757 GTCAATGCAA
Statistics
Matches: 113, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
35 1 0.01
36 10 0.09
37 90 0.80
38 10 0.09
39 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:71253669 original size:31 final size:31
Alignment explanation
Indices: 71253634--71253750 Score: 141
Period size: 31 Copynumber: 3.8 Consensus size: 31
71253624 AAATCAGAAT
71253634 CAGAATCAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGAATTAGGTAA
* *
71253665 CAGAATCAGAATCAGTATCAGGTAA-CA-G-AA
1 CAGAATCAGAATCAGAATCA-G-AATTAGGTAA
* *
71253695 TCAGAATCAGAACCAAAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGAATTAGGTAA
*
71253727 CAGAATCAGAATCAGAATTAGAAT
1 CAGAATCAGAATCAGAATCAGAAT
71253751 CAGAATGTCA
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 59 0.83
32 4 0.06
33 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATTAGGTAA
Found at i:71254020 original size:26 final size:26
Alignment explanation
Indices: 71253973--71254023 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
71253963 GCGAGGTTGC
*
71253973 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGGCACCAGAA
*
71253999 CAGATATATGTGGCG-AGGCACCAGA
1 CAGATAT-TGTGACGAAGGCACCAGA
71254024 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGACGAAGGCACCAGAA
Found at i:71254298 original size:27 final size:27
Alignment explanation
Indices: 71254268--71254652 Score: 351
Period size: 27 Copynumber: 14.3 Consensus size: 27
71254258 GGGTTAAAAT
*
71254268 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
71254295 GGTAATTCTACCTTACAAGAGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
71254322 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
71254349 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
71254376 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
71254403 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* **
71254430 GGT-ATTTCTACCCT--AGGGGTAAAAT-
1 GGTAATTT-TACCCTACAAGGGT-ATTTC
71254455 GGTAATTTTACCCTACAAGGGTATCTT-
1 GGTAATTTTACCCTACAAGGGTAT-TTC
* *
71254482 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
** * * *
71254509 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
71254536 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
71254563 GGTAATTATACCCTAC-AGGGTTATTTT
1 GGTAATTTTACCCTACAAGGG-TATTTC
* *
71254590 AGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
71254617 GGT-ATTTCTACCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
71254644 GGTAATTTT
1 GGTAATTTT
71254653 GTAAATCGAG
Statistics
Matches: 300, Mismatches: 41, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
25 15 0.05
26 28 0.09
27 242 0.81
28 15 0.05
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:71254334 original size:54 final size:54
Alignment explanation
Indices: 71254268--71254650 Score: 443
Period size: 54 Copynumber: 7.1 Consensus size: 54
71254258 GGGTTAAAAT
* * * * *
71254268 GGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAAGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * *
71254322 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* *
71254376 GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* ** *
71254430 GGTATTTCTACCCT--AGGGGTAAAAT-GGTAATTTTACCCTACAAGGGTATCTT-
1 GGTAATTCTACCCTACAGGGGT-ATTTCGGTAATTCTACCCTACAAGGGTAT-TTC
* * ** * *
71254482 GGTAATTCTACCTTACAGGAGTATTTCAATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * * *
71254536 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTATACCCTAC-AGGGTTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGG-TATTTC
* * * * *
71254590 AGTATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
71254644 GGTAATT
1 GGTAATT
71254651 TTGTAAATCG
Statistics
Matches: 276, Mismatches: 45, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
52 40 0.14
53 11 0.04
54 222 0.80
55 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
Found at i:71254380 original size:81 final size:81
Alignment explanation
Indices: 71254272--71254650 Score: 471
Period size: 81 Copynumber: 4.7 Consensus size: 81
71254262 TAAAATGGTA
* * * * *
71254272 ATTT-TACCCTACAAGGGTATCTCGGTAATTCTACCTTACAAGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
*
71254336 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
* * * *
71254352 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
*
71254417 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCAGT
** *
71254433 ATTTCTACCCT--AGGGGTAAAAT-GGTAATTTTACCCTACAAGGGTATCTT-GGTAATTCTACC
1 ATTTCTACCCTACAGGGGT-ATTTCGGTAATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACC
* * *
71254494 TTACAGGAGTATTTCAAT
64 CTACAGGGGTATTTCAGT
* * * *
71254512 AATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTATACCCT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
* *
71254577 ACAGGGTTATTTTAGT
66 ACAGGGGTATTTCAGT
* * *
71254593 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTTGGTAATT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATT
71254651 TTGTAAATCG
Statistics
Matches: 261, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
79 63 0.24
80 12 0.05
81 186 0.71
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCT
ACAGGGGTATTTCAGT
Found at i:71254569 original size:187 final size:187
Alignment explanation
Indices: 71254252--71254631 Score: 670
Period size: 187 Copynumber: 2.0 Consensus size: 187
71254242 GTCATTTAAC
*
71254252 ACCCTAGGGTTAAAATGGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAAGAGT
1 ACCCTAGGGGTAAAATGGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAAGAGT
* *
71254317 ATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTGGTAAT
66 ATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAAT
* *
71254382 TCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
131 TATACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
* *
71254439 ACCCTAGGGGTAAAATGGTAATTTTACCCTACAAGGGTATCTTGGTAATTCTACCTTACAGGAGT
1 ACCCTAGGGGTAAAATGGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAAGAGT
*
71254504 ATTTCAATAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAAT
66 ATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAAT
* *
71254569 TATACCCTACAGGGTTATTTTAGTATTTCTACCCTACAGGGGTATTTCGGTATTTCT
131 TATACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
71254626 ACCCTA
1 ACCCTA
71254632 CAGGGGTATT
Statistics
Matches: 183, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
187 183 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (187 bp):
ACCCTAGGGGTAAAATGGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCTTACAAGAGT
ATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAAT
TATACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCT
Found at i:71254730 original size:27 final size:27
Alignment explanation
Indices: 71254698--71255080 Score: 183
Period size: 27 Copynumber: 14.2 Consensus size: 27
71254688 AGGGTCTTTG
*
71254698 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTTA
* * * *
71254725 ATAATTTTACAGGTTGAAGGTATTTTA
1 GTAATTTTACAAGTCGAGGGTATTTTA
* * *
71254752 GTAATTTCACAAATC-AGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTTA
* * *
71254779 GTAATTTTACAA-ACCAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTTA
* ** *
71254806 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAGTCGAGGGTATTTTA
* * *
71254833 GTAATTTTACAA-ACCAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTTA
* * *
71254860 GTAATTTGGTA-AA-CCAAGGGTATTTTG
1 GTAATTT--TACAAGTCGAGGGTATTTTA
* * *
71254887 GTAATTTTACAA-ACCAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTTA
* * ** *
71254914 GTGATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAGTCGAGGGTATTTTA
* * *
71254941 GTAATTTTACAA-ACCAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTTA
** ** * *
71254968 GTAATTTTGTAAACCAAGGGTA-TTTG
1 GTAATTTTACAAGTCGAGGGTATTTTA
* * *
71254994 GTAATTTTACAA-ACCAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTTA
* * ** *
71255021 GTGATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAGTCGAGGGTATTTTA
* *
71255048 GTAATTTTACAA-ACCAGGGGTATTTTA
1 GTAATTTTACAAGTCGA-GGGTATTTTA
71255075 GTAATT
1 GTAATT
71255081 CGGTAAACTA
Statistics
Matches: 288, Mismatches: 53, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
25 4 0.01
26 31 0.11
27 239 0.83
28 12 0.04
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTTA
Found at i:71255088 original size:27 final size:27
Alignment explanation
Indices: 71254743--71255080 Score: 471
Period size: 27 Copynumber: 12.6 Consensus size: 27
71254733 ACAGGTTGAA
* * *
71254743 GGTATTTTAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
71254770 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* *
71254797 GGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
71254824 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*** *
71254851 GGTATTTTGGTAATTTGGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
71254878 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
71254905 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
71254932 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
** *
71254959 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
71254986 GGTA-TTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
71255012 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
71255039 GGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
71255066 GGTATTTTAGTAATT
1 GGTATTTTGGTAATT
71255081 CGGTAAACTA
Statistics
Matches: 272, Mismatches: 38, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.08
27 249 0.92
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:71255088 original size:54 final size:54
Alignment explanation
Indices: 71254743--71255080 Score: 543
Period size: 54 Copynumber: 6.3 Consensus size: 54
71254733 ACAGGTTGAA
* * * * * *
71254743 GGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
71254797 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
** *
71254851 GGTATTTTGGTAATTTGGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
*
71254905 GGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
* *
71254959 GGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
*
71255012 GGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
*
71255066 GGTATTTTAGTAATT
1 GGTATTTTGGTAATT
71255081 CGGTAAACTA
Statistics
Matches: 262, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
53 50 0.19
54 212 0.81
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGG
Found at i:71257231 original size:46 final size:46
Alignment explanation
Indices: 71257181--71257352 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
71257171 GGTTGAGCAT
*
71257181 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * * *
71257227 CCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
* * * *
71257272 ATCCGAACTCATTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
71257320 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71257353 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 56 0.55
47 25 0.25
48 5 0.05
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:71257336 original size:93 final size:93
Alignment explanation
Indices: 71257177--71257347 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71257167 GGATGGTTGA
* * *
71257177 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71257242 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
71257270 GCATCCGAACTCATTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
71257335 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71257348 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71257613 original size:19 final size:20
Alignment explanation
Indices: 71257576--71257613 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71257566 ATAAGGTGGT
71257576 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
71257596 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
71257614 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:71263560 original size:19 final size:20
Alignment explanation
Indices: 71263523--71263560 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71263513 ATAAGGTGGT
71263523 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
71263543 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
71263561 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Done.