Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 219 of 290
Found at i:71271747 original size:27 final size:27
Alignment explanation
Indices: 71271707--71271818 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
71271697 AGGAAGCGTC
*
71271707 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
71271734 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
71271761 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
71271789 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
71271815 CTGG
1 CTGG
71271819 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:71271813 original size:54 final size:54
Alignment explanation
Indices: 71271707--71271818 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
71271697 AGGAAGCGTC
* *
71271707 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
71271761 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
71271815 CTGG
1 CTGG
71271819 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:71290549 original size:28 final size:29
Alignment explanation
Indices: 71290437--71290561 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
71290427 GAAAGCATGT
* * *
71290437 ATATGAATGTTATTTGGGCTTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
71290466 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
71290495 ATACAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
71290524 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
71290552 ATATGCATGT
1 ATATGAATGT
71290562 ATGTAGACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 23 0.27
29 62 0.73
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:71303841 original size:22 final size:22
Alignment explanation
Indices: 71303813--71303854 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
71303803 ATTCAACATG
71303813 GCATACCATTACATGGATACTT
1 GCATACCATTACATGGATACTT
71303835 GCATACCATTACATGGATAC
1 GCATACCATTACATGGATAC
71303855 ATGTTCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (22 bp):
GCATACCATTACATGGATACTT
Found at i:71305996 original size:96 final size:96
Alignment explanation
Indices: 71305832--71306111 Score: 357
Period size: 96 Copynumber: 2.9 Consensus size: 96
71305822 ATACTAGGGT
* * * *
71305832 TATGTTAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTGAT-TGGAGAGCTAGTGTA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGACATTGATAT-GAGAGCTAGTGTA
71305896 AGACCATGTCTGGGACATGGCATCAGCCTCGA
65 AGACCATGTCTGGGACATGGCATCAGCCTCGA
* *
71305928 TATGTGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGATATTGATATGAGAGTTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGACATTGATATGAGAGCTAGTGTAA
*
71305993 GACCATGTCTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCAGCCTCGA
* * * * * * * * *
71306024 CATGTGGGCTAGTGTAAGGCCATGTTT-GAATAGGGCATCGGCATCGATTTATGAGGGCCAGTGT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGACATTGA--TATGAGAGCTAGTGT
* *
71306088 AAAACCATGTTTGGGACATGGCAT
64 AAGACCATGTCTGGGACATGGCAT
71306112 TGGCATCTTA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
95 15 0.09
96 111 0.69
97 35 0.22
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACACGGCATCGACATTGATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCAGCCTCGA
Found at i:71306016 original size:48 final size:48
Alignment explanation
Indices: 71305842--71306111 Score: 231
Period size: 48 Copynumber: 5.6 Consensus size: 48
71305832 TATGTTAGCC
* *
71305842 AGTGTAAGACCATGTTTGGAACATGGCATCAACATTGAT-TGGAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATAT-GAGAGCT
* * * *
71305890 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCCTCGATATGTGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGA-CATTGATATGAGAGCT
* * * *
71305938 AGTGTAAGACCATGTTTGGAACACGGCATCGATATTGATATGAGAGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAGCT
* * * * * * *
71305986 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGGGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAGCT
* * * * * * * *
71306034 AGTGTAAGGCCATGT-TTGAATAGGGCATCGGCATCGATTTATGAGGGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGA--TATGAGAGCT
* * *
71306083 AGTGTAAAACCATGTTTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGAACATGGCAT
71306112 TGGCATCTTA
Statistics
Matches: 177, Mismatches: 39, Indels: 10
0.78 0.17 0.04
Matches are distributed among these distances:
47 18 0.10
48 128 0.72
49 22 0.12
50 9 0.05
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGACATTGATATGAGAGCT
Found at i:71310865 original size:47 final size:46
Alignment explanation
Indices: 71310800--71311058 Score: 166
Period size: 49 Copynumber: 5.5 Consensus size: 46
71310790 ACTGACGCCA
* *
71310800 TGTCCCAGACATGGTCTTACACTAGCTAGCACATTAAAGTCGATGACG
1 TGTCCTAGACA-GGTCTTACACT-GCTAGCACATTAAAGTCGATGCCG
* ** * * * * *
71310848 TGTCCTAGATAGGTCTTACACTGACTTTCAAATATCGAGGTTGATGCCA
1 TGTCCTAGACAGGTCTTACACTG-CTAGCACAT-T-AAAGTCGATGCCG
* *
71310897 TATCCTAGACAGGTCTTACATTGGCTAGCACATTAAAGTCGATGCCG
1 TGTCCTAGACAGGTCTTACACT-GCTAGCACATTAAAGTCGATGCCG
* ** * ** * *
71310944 TGTCCCAGACAGGTCTTACACTGACTTTCAAATATCGAGGCTGATGCCA
1 TGTCCTAGACAGGTCTTACACTG-CTAGCACAT-TAAAGTC-GATGCCG
* * * *
71310993 TATCCCAGACAGGTCTTACACTGAC-A-CACA--ACAAGTTGATGCCA
1 TGTCCTAGACAGGTCTTACACTG-CTAGCACATTA-AAGTCGATGCCG
*
71311037 TGTCCCAGACAGGTCTTACACT
1 TGTCCTAGACAGGTCTTACACT
71311059 AGCTTGTATA
Statistics
Matches: 165, Mismatches: 38, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
44 28 0.17
45 2 0.01
46 2 0.01
47 54 0.33
48 15 0.09
49 63 0.38
50 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (46 bp):
TGTCCTAGACAGGTCTTACACTGCTAGCACATTAAAGTCGATGCCG
Found at i:71310911 original size:49 final size:49
Alignment explanation
Indices: 71310858--71311058 Score: 209
Period size: 49 Copynumber: 4.2 Consensus size: 49
71310848 TGTCCTAGAT
* *
71310858 AGGTCTTACACTGACTTTCAAATATCGAGGTTGATGCCATATCCTAGAC
1 AGGTCTTACACTGACTTTCAAATATCGAAGTTGATGCCATATCCCAGAC
* * ** * * * * *
71310907 AGGTCTTACATTGGCTAGCACAT-T-AAAGTCGATGCCGTGTCCCAGAC
1 AGGTCTTACACTGACTTTCAAATATCGAAGTTGATGCCATATCCCAGAC
* *
71310954 AGGTCTTACACTGACTTTCAAATATCGAGGCTGATGCCATATCCCAGAC
1 AGGTCTTACACTGACTTTCAAATATCGAAGTTGATGCCATATCCCAGAC
* * *
71311003 AGGTCTTACACTGAC--ACACA-A-C-AAGTTGATGCCATGTCCCAGAC
1 AGGTCTTACACTGACTTTCAAATATCGAAGTTGATGCCATATCCCAGAC
71311047 AGGTCTTACACT
1 AGGTCTTACACT
71311059 AGCTTGTATA
Statistics
Matches: 123, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
44 31 0.25
45 1 0.01
46 1 0.01
47 38 0.31
48 2 0.02
49 50 0.41
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
AGGTCTTACACTGACTTTCAAATATCGAAGTTGATGCCATATCCCAGAC
Found at i:71310976 original size:96 final size:96
Alignment explanation
Indices: 71310791--71311110 Score: 384
Period size: 96 Copynumber: 3.4 Consensus size: 96
71310781 GGATAAAATA
* * * * *
71310791 CTGACGCCATGTCCCAGACATGGTCTTACACTAGCTAGCACATTAAAGTCGATGACGTGTCCTAG
1 CTGATGCCATATCCCAGACA-GGTCTTACACTGGCTAGCACATTAAAGTCGATGCCGTGTCCCAG
*
71310856 ATAGGTCTTACACTGACTTTCAAATATCGAGG
65 ACAGGTCTTACACTGACTTTCAAATATCGAGG
* * *
71310888 TTGATGCCATATCCTAGACAGGTCTTACATTGGCTAGCACATTAAAGTCGATGCCGTGTCCCAGA
1 CTGATGCCATATCCCAGACAGGTCTTACACTGGCTAGCACATTAAAGTCGATGCCGTGTCCCAGA
71310953 CAGGTCTTACACTGACTTTCAAATATCGAGG
66 CAGGTCTTACACTGACTTTCAAATATCGAGG
* * *
71310984 CTGATGCCATATCCCAGACAGGTCTTACACTGAC-A-CACA--ACAAGTTGATGCCATGTCCCAG
1 CTGATGCCATATCCCAGACAGGTCTTACACTGGCTAGCACATTA-AAGTCGATGCCGTGTCCCAG
* **
71311045 ACAGGTCTTACACT-AGCTTGT-ATATCCCGAGG
65 ACAGGTCTTACACTGA-CTT-TCAAATATCGAGG
* * * *
71311077 CAGATG-CATGTCCCAAACATGTCTTACACTGGCT
1 CTGATGCCATATCCCAGACAGGTCTTACACTGGCT
71311111 CAGATACCAC
Statistics
Matches: 196, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
92 25 0.13
93 48 0.24
94 5 0.03
95 1 0.01
96 101 0.52
97 16 0.08
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (96 bp):
CTGATGCCATATCCCAGACAGGTCTTACACTGGCTAGCACATTAAAGTCGATGCCGTGTCCCAGA
CAGGTCTTACACTGACTTTCAAATATCGAGG
Found at i:71315641 original size:31 final size:31
Alignment explanation
Indices: 71315598--71315666 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
71315588 GTGTCCCAAG
*
71315598 CCACACGGGCGTGTGTGACCACAGGCCCCAC
1 CCACACGAGCGTGTGTGACCACAGGCCCCAC
71315629 CCACACGAGCGTGTGTGACCACAGGCCCCAC
1 CCACACGAGCGTGTGTGACCACAGGCCCCAC
71315660 CCACACG
1 CCACACG
71315667 GGTGTATGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.22, C:0.43, G:0.26, T:0.09
Consensus pattern (31 bp):
CCACACGAGCGTGTGTGACCACAGGCCCCAC
Found at i:71315671 original size:29 final size:30
Alignment explanation
Indices: 71315598--71315676 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 30
71315588 GTGTCCCAAG
71315598 CCACACGGGCGTGTGTGACCACAGGCCCCAC
1 CCACAC-GGCGTGTGTGACCACAGGCCCCAC
71315629 CCACACGAGCGTGTGTGACCACAGGCCCCAC
1 CCACACG-GCGTGTGTGACCACAGGCCCCAC
*
71315660 CCACACGG-GTGTATGAC
1 CCACACGGCGTGTGTGAC
71315677 TCTCCAAAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
29 8 0.17
30 2 0.04
31 36 0.78
ACGTcount: A:0.22, C:0.39, G:0.28, T:0.11
Consensus pattern (30 bp):
CCACACGGCGTGTGTGACCACAGGCCCCAC
Found at i:71317945 original size:40 final size:40
Alignment explanation
Indices: 71317868--71317999 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 40
71317858 ACCCAAGTAT
* *
71317868 CTTCGGGAT-TTAG-CCAGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAACAACTAGCACAAATGC
*
71317907 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAA-CAACTAGCACAAATGC
* * * * *
71317947 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
*
71317987 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
71318000 TCCTGTTATC
Statistics
Matches: 77, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 12 0.16
40 63 0.82
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACAACTAGCACAAATGC
Found at i:71323703 original size:93 final size:93
Alignment explanation
Indices: 71323591--71323762 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
71323581 CGCCCATAAG
*
71323591 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
71323655 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
71323684 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71323749 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71323763 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71323757 original size:46 final size:46
Alignment explanation
Indices: 71323584--71323759 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
71323574 TGTAACCCGC
* *
71323584 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
71323630 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
71323680 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71323723 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71323760 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71331265 original size:93 final size:93
Alignment explanation
Indices: 71331153--71331324 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
71331143 CGCCCATAAG
*
71331153 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
71331217 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
71331246 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71331311 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71331325 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71331319 original size:46 final size:46
Alignment explanation
Indices: 71331146--71331321 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
71331136 TGTAACCCGC
* *
71331146 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
71331192 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
71331242 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71331285 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71331322 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71334501 original size:23 final size:23
Alignment explanation
Indices: 71334470--71334513 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
71334460 TGGATGGGCA
71334470 ACACACCCGTGTCCATGGCCCGC
1 ACACACCCGTGTCCATGGCCCGC
*
71334493 ACACGCCCGTGTCCATGGCCC
1 ACACACCCGTGTCCATGGCCC
71334514 ATGTCCCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.48, G:0.23, T:0.14
Consensus pattern (23 bp):
ACACACCCGTGTCCATGGCCCGC
Found at i:71335654 original size:50 final size:49
Alignment explanation
Indices: 71335592--71335724 Score: 169
Period size: 48 Copynumber: 2.7 Consensus size: 49
71335582 CGAGGCCGAC
* *
71335592 GCCATGTCCCAGACATGGTATTACACTACCTCTCACATATTCATGCAGAT
1 GCCATGTCCCAGACATGGTATTACACTAGCTCTCAC-TATACATGCAGAT
* * * * * *
71335642 GCCATGTCCCAGACATTGTATTACACTGGCAC-CTCTATACGTGCCGAT
1 GCCATGTCCCAGACATGGTATTACACTAGCTCTCACTATACATGCAGAT
*
71335690 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCA
1 GCCATGTCCCAGACATGGTATTACACTAGCTCTCA
71335725 TAATGTGGTC
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 38 0.55
49 3 0.04
50 28 0.41
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTATTACACTAGCTCTCACTATACATGCAGAT
Found at i:71339777 original size:19 final size:19
Alignment explanation
Indices: 71339753--71339803 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
71339743 TGGACACAGG
71339753 GACACGCCCGTGTGCCCTC
1 GACACGCCCGTGTGCCCTC
*
71339772 GACACGCCCATGTGCCCTC
1 GACACGCCCGTGTGCCCTC
71339791 GACACGCCCGTGT
1 GACACGCCCGTGT
71339804 CCTCAGGCCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.14, C:0.45, G:0.25, T:0.16
Consensus pattern (19 bp):
GACACGCCCGTGTGCCCTC
Found at i:71341696 original size:50 final size:47
Alignment explanation
Indices: 71341579--71341906 Score: 289
Period size: 50 Copynumber: 7.0 Consensus size: 47
71341569 AGGGTAAGGT
* * * * *
71341579 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTCACACATCAAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-AG
*
71341627 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC--ATATC-AG
**
71341677 GATGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT---
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAG
* * * * * *
71341719 -CTGATGCCATTTCCTAGCCATGGTTTTACACTAGCTCTTATCTATCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TATCAG
* * * * * * *
71341767 TGCCAATTCCATGTCCCAGCCATGGTCTTACACTA--ACACATATTAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAG
71341813 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA--TC-AG
*
71341863 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAGGTCTCATATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
71341907 TCCTTCATCA
Statistics
Matches: 229, Mismatches: 33, Indels: 37
0.77 0.11 0.12
Matches are distributed among these distances:
41 33 0.14
45 33 0.14
46 6 0.03
47 8 0.03
48 37 0.16
49 21 0.09
50 90 0.39
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAG
Found at i:71341741 original size:41 final size:41
Alignment explanation
Indices: 71341679--71341854 Score: 138
Period size: 45 Copynumber: 4.0 Consensus size: 41
71341669 ATATCGAGGA
71341679 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
* * * *
71341720 TGATGCCATTTCCTAGCCATGGTTTTACACTAGCTCTTATCTATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTC---TC-ATC
* * * *
71341765 AGTGCCAATTCCATGTCCCAGCCATGGTCTTACACTAACACAT-ATTAAGC
1 --TG---ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCA-T---C
*
71341815 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
71341855 ATGTCGAGGC
Statistics
Matches: 106, Mismatches: 15, Indels: 25
0.73 0.10 0.17
Matches are distributed among these distances:
41 32 0.30
44 4 0.04
45 34 0.32
46 1 0.01
47 3 0.03
48 3 0.03
50 29 0.27
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (41 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC
Found at i:71343658 original size:20 final size:20
Alignment explanation
Indices: 71343635--71343686 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
71343625 GTGTGGTCAC
71343635 ACACGCTCGTGTGGCTTGGG
1 ACACGCTCGTGTGGCTTGGG
71343655 ACACGCTCGTGTGGCTTGGG
1 ACACGCTCGTGTGGCTTGGG
*
71343675 ACACGCCCGTGT
1 ACACGCTCGTGT
71343687 CCTCAACCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.29, G:0.37, T:0.23
Consensus pattern (20 bp):
ACACGCTCGTGTGGCTTGGG
Found at i:71349412 original size:14 final size:14
Alignment explanation
Indices: 71349378--71349404 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71349368 CACAAAGTAT
71349378 ATTATATTTTTATA
1 ATTATATTTTTATA
71349392 ATTATATTTTTAT
1 ATTATATTTTTAT
71349405 TTTTATATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATATTTTTATA
Found at i:71353468 original size:25 final size:25
Alignment explanation
Indices: 71353434--71353484 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
71353424 GATGATCAAG
71353434 TTAGTAAATATTATCTATTAACAAT
1 TTAGTAAATATTATCTATTAACAAT
71353459 TTAGTAAATATTATCTATTAACAAT
1 TTAGTAAATATTATCTATTAACAAT
71353484 T
1 T
71353485 ACAAGTCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (25 bp):
TTAGTAAATATTATCTATTAACAAT
Found at i:71363288 original size:29 final size:29
Alignment explanation
Indices: 71363246--71363303 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
71363236 CTTGGTGGAA
*
71363246 CATAGTTGGATCTCTTAGGTTTGATTGCT
1 CATAGTTGCATCTCTTAGGTTTGATTGCT
71363275 CATAGTTGCATCTCTTAGGTTTGATTGCT
1 CATAGTTGCATCTCTTAGGTTTGATTGCT
71363304 TATTAATCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (29 bp):
CATAGTTGCATCTCTTAGGTTTGATTGCT
Found at i:71366670 original size:38 final size:38
Alignment explanation
Indices: 71366606--71366680 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
71366596 GATGTGTATT
* * *
71366606 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
71366644 CGGGATAAATCCCGTAGGCCTAGTGCTGGTATTATAT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATAT
71366681 TCGGACCTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:71366726 original size:43 final size:43
Alignment explanation
Indices: 71366678--71366888 Score: 332
Period size: 43 Copynumber: 4.9 Consensus size: 43
71366668 GCTGGTATTA
*
71366678 TATTCGGACCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
71366721 TATTCGGGCCTTCGTGCCTAGTAGGCTTAGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
*
71366764 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
** *
71366807 TATTTAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
71366850 TATTTGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
71366889 AATGATATGT
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:71378848 original size:28 final size:28
Alignment explanation
Indices: 71378816--71378885 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
71378806 AATGAGATTG
71378816 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
71378844 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
71378872 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71378886 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:71384388 original size:49 final size:47
Alignment explanation
Indices: 71384273--71384393 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 47
71384263 TGCCGATGCC
* *
71384273 ATGTTCCAGATATGGTCTTACACTGACTCATCCATTAAGTCAATGCCA
1 ATGTCCCAGATATGGTCTTACACTGACTCATCCATCAAGTCAA-GCCA
* * *
71384321 A-GTCCCAGACATGGTCTTACACTGACT-ATCGAGATCGAGATCAA-CACA
1 ATGTCCCAGATATGGTCTTACACTGACTCATC--CATCAAG-TCAAGC-CA
71384369 ATGTCCCAGATATGGTCTTACACTG
1 ATGTCCCAGATATGGTCTTACACTG
71384394 GCTCTCATCT
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
46 3 0.05
47 25 0.40
48 8 0.13
49 26 0.42
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGATATGGTCTTACACTGACTCATCCATCAAGTCAAGCCA
Found at i:71389782 original size:17 final size:17
Alignment explanation
Indices: 71389741--71389782 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
71389731 TTTGAGTCCA
71389741 TTTATTTTCACTTTGTT
1 TTTATTTTCACTTTGTT
**
71389758 TTGCTTTTC-CTTTTGTT
1 TTTATTTTCAC-TTTGTT
71389775 TTTATTTT
1 TTTATTTT
71389783 AAAAGTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.74
Consensus pattern (17 bp):
TTTATTTTCACTTTGTT
Found at i:71398274 original size:46 final size:48
Alignment explanation
Indices: 71398202--71398305 Score: 140
Period size: 46 Copynumber: 2.2 Consensus size: 48
71398192 GACAGGACAG
* * *
71398202 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
* *
71398248 GACAGGAATGAGCCATGTAAGCCCATATTAATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATT-ACAGATATATGGCATTGGA
71398297 GACAGGAAT
1 GACAGGAAT
71398306 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 25 0.50
47 1 0.02
49 24 0.48
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATTACAGATATATGGCATTGGA
Found at i:71398303 original size:49 final size:46
Alignment explanation
Indices: 71398202--71398341 Score: 138
Period size: 46 Copynumber: 3.0 Consensus size: 46
71398192 GACAGGACAG
* * *
71398202 GACAGAAATGAGCCATGTAAGTCCATATCAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
* *
71398248 GACAGGAATGAGCCATGTAAGCCCATATTAATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATA-T--CAGATATATGGCATTGGA
* ** * * *
71398297 GACAGGAATAATTCATGTAAGTCCATGTC-GAAGATATGGCATTGG
1 GACAGGAATGAGCCATGTAAGCCCATATCAG-ATATATGGCATTGG
71398342 TAGGATATTG
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
46 38 0.49
47 1 0.01
48 1 0.01
49 37 0.48
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAGATATATGGCATTGGA
Found at i:71410444 original size:11 final size:11
Alignment explanation
Indices: 71410428--71410456 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
71410418 TATAAAATTT
71410428 TTCTATTAAAA
1 TTCTATTAAAA
71410439 TTCTATTAAAA
1 TTCTATTAAAA
71410450 TTC-ATTA
1 TTCTATTA
71410457 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:71414582 original size:17 final size:17
Alignment explanation
Indices: 71414562--71414594 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
71414552 AACGAATGAT
71414562 CGAGAGAAAAAGAGTAA
1 CGAGAGAAAAAGAGTAA
71414579 CGAGAGAAAAAGAGTA
1 CGAGAGAAAAAGAGTA
71414595 GCTAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.06, G:0.30, T:0.06
Consensus pattern (17 bp):
CGAGAGAAAAAGAGTAA
Found at i:71414669 original size:18 final size:19
Alignment explanation
Indices: 71414646--71414687 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
71414636 GAGAAGAAGA
71414646 GGGAA-TTTGGGAGTGAGC
1 GGGAATTTTGGGAGTGAGC
71414664 GGGAATTTTTTGGGAGTGAGC
1 GGGAA--TTTTGGGAGTGAGC
71414685 GGG
1 GGG
71414688 TAAGCAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
21 16 0.76
ACGTcount: A:0.19, C:0.05, G:0.50, T:0.26
Consensus pattern (19 bp):
GGGAATTTTGGGAGTGAGC
Found at i:71414989 original size:7 final size:7
Alignment explanation
Indices: 71414979--71415025 Score: 85
Period size: 7 Copynumber: 6.6 Consensus size: 7
71414969 TTTTTTTATT
71414979 TTTTAAA
1 TTTTAAA
71414986 TTTTAAA
1 TTTTAAA
71414993 TTTTAAA
1 TTTTAAA
71415000 TTTTAAA
1 TTTTAAA
71415007 TTTTAAA
1 TTTTAAA
71415014 TTTTAAAA
1 TTTT-AAA
71415022 TTTT
1 TTTT
71415026 TTTGAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTTTAAA
Found at i:71415045 original size:9 final size:8
Alignment explanation
Indices: 71414978--71415052 Score: 68
Period size: 7 Copynumber: 9.2 Consensus size: 8
71414968 GTTTTTTTAT
71414978 TTTTTAAA
1 TTTTTAAA
71414986 -TTTTAAA
1 TTTTTAAA
71414993 -TTTTAAA
1 TTTTTAAA
71415000 -TTTTAAA
1 TTTTTAAA
71415007 -TTTTAAA
1 TTTTTAAA
*
71415014 TTTTAAAA
1 TTTTTAAA
71415022 TTTTTTTGAAGA
1 --TTTTT-AA-A
71415034 TTTTTATAA
1 TTTTTA-AA
71415043 TTTTTAAA
1 TTTTTAAA
71415051 TT
1 TT
71415053 ATCGTATAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
7 28 0.47
8 10 0.17
9 8 0.14
10 10 0.17
11 2 0.03
12 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (8 bp):
TTTTTAAA
Found at i:71415863 original size:18 final size:16
Alignment explanation
Indices: 71415840--71415881 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
71415830 TTTCTCTTAA
71415840 ATAATTTAAACTATATT
1 ATAATTTAAA-TATATT
*
71415857 CATAATTTTAATATATT
1 -ATAATTTAAATATATT
71415874 A-AATTTAA
1 ATAATTTAA
71415882 TATTATCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 1 0.05
17 6 0.27
18 9 0.41
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTTAAATATATT
Found at i:71416004 original size:7 final size:7
Alignment explanation
Indices: 71415944--71416005 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
71415934 ACTAATTAAT
71415944 CTAAACC
1 CTAAACC
*
71415951 CTAACCC
1 CTAAACC
71415958 CT-AACC
1 CTAAACC
*
71415964 CTTAACC
1 CTAAACC
71415971 TCTAAACC
1 -CTAAACC
*
71415979 CTAAGCC
1 CTAAACC
* *
71415986 ATAAAAC
1 CTAAACC
*
71415993 ATAAACC
1 CTAAACC
71416000 CTAAAC
1 CTAAAC
71416006 TTCTACCCCT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
6 5 0.11
7 33 0.75
8 6 0.14
ACGTcount: A:0.42, C:0.39, G:0.02, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:71416315 original size:15 final size:15
Alignment explanation
Indices: 71416292--71416326 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
71416282 CTACCCATGG
* *
71416292 CCATTAAACCTTAAA
1 CCATAAAACCCTAAA
71416307 CCATAAAACCCTAAA
1 CCATAAAACCCTAAA
71416322 CCATA
1 CCATA
71416327 GACCTTAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (15 bp):
CCATAAAACCCTAAA
Found at i:71416513 original size:46 final size:45
Alignment explanation
Indices: 71416474--71416586 Score: 149
Period size: 47 Copynumber: 2.4 Consensus size: 45
71416464 TTTTTAGGGT
71416474 TTAGGGTTTTAGAGGTTATAGATTAGTGTTTAGTGTTTTTTAGGGT
1 TTAGGGTTTTAGAGGTTATAGATTAGTGTTTA-TGTTTTTTAGGGT
*
71416520 TTAGGGGTTTTA-AGGGTTATAGATTAGTGTTTATGAATTTTTTTGGGT
1 TTA-GGGTTTTAGA-GGTTATAGATTAGTGTTTATG--TTTTTTAGGGT
*
71416568 TTA-GGTTTTAGGGGTTATA
1 TTAGGGTTTTAGAGGTTATA
71416587 TGACTTTTTA
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
46 20 0.33
47 27 0.45
48 13 0.22
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (45 bp):
TTAGGGTTTTAGAGGTTATAGATTAGTGTTTATGTTTTTTAGGGT
Found at i:71416538 original size:47 final size:45
Alignment explanation
Indices: 71416460--71416586 Score: 177
Period size: 46 Copynumber: 2.8 Consensus size: 45
71416450 CATCCATATG
71416460 ATGTTTTTTAGGGTTTAGGGTTTT-AGAGGTTATAGATTAGTGTTT
1 ATGTTTTTTAGGGTTTAGGGTTTTAAG-GGTTATAGATTAGTGTTT
71416505 AGTGTTTTTTAGGGTTTAGGGGTTTTAAGGGTTATAGATTAGTGTTT
1 A-TGTTTTTTAGGGTTTA-GGGTTTTAAGGGTTATAGATTAGTGTTT
* *
71416552 ATGAATTTTTTTGGGTTTA-GGTTTTAGGGGTTATA
1 ATG--TTTTTTAGGGTTTAGGGTTTTAAGGGTTATA
71416587 TGACTTTTTA
Statistics
Matches: 75, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
45 1 0.01
46 33 0.44
47 26 0.35
48 15 0.20
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (45 bp):
ATGTTTTTTAGGGTTTAGGGTTTTAAGGGTTATAGATTAGTGTTT
Found at i:71416645 original size:41 final size:41
Alignment explanation
Indices: 71416599--71416769 Score: 206
Period size: 41 Copynumber: 4.2 Consensus size: 41
71416589 ACTTTTTATG
* *
71416599 GCGTTTTGAGAAAAAACGCCGCTATTGCTCTATTTTTAGCA
1 GCGTTTTGACAAAAAACGCCGCTATTGCTCTATTTTTAGCT
*
71416640 GCG-TTTGACCAAAAACGCCGCTATTGCTCTATTTTTTAGCT
1 GCGTTTTGACAAAAAACGCCGCTATTGCTCTA-TTTTTAGCT
* * *
71416681 GCG-TCTGACCAAAAACGCCGCTATTGCTCTGTTTTTTAGCT
1 GCGTTTTGACAAAAAACGCCGCTATTGCTCT-ATTTTTAGCT
* *
71416722 GCGTTTT-ACCAGAAAACGCTGCTATTGCTCTATTTTTAGC-
1 GCGTTTTGA-CAAAAAACGCCGCTATTGCTCTATTTTTAGCT
71416762 GACGTTTT
1 G-CGTTTT
71416770 TGGTAAAACA
Statistics
Matches: 115, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
40 27 0.23
41 67 0.58
42 21 0.18
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (41 bp):
GCGTTTTGACAAAAAACGCCGCTATTGCTCTATTTTTAGCT
Found at i:71417170 original size:19 final size:20
Alignment explanation
Indices: 71417143--71417187 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
71417133 ATAAAGTACA
* *
71417143 TTCTCTATTGC-TTCTTATT
1 TTCTTTATTGCTTTCATATT
71417162 TTCTTTATTGCTTTCATATT
1 TTCTTTATTGCTTTCATATT
71417182 TTCTTT
1 TTCTTT
71417188 GTTCTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.67
Consensus pattern (20 bp):
TTCTTTATTGCTTTCATATT
Found at i:71420077 original size:28 final size:28
Alignment explanation
Indices: 71420053--71420137 Score: 125
Period size: 28 Copynumber: 3.0 Consensus size: 28
71420043 CTTATATATG
71420053 TGCAAAAATACAAACTTTGTAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
* * *
71420081 TTCAAAAATATAAACTTTGAAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
**
71420109 TGCAAAAATACAAAAGTTGTAATATAAA
1 TGCAAAAATACAAACTTTGTAATATAAA
71420137 T
1 T
71420138 TAAATTCATT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.29
Consensus pattern (28 bp):
TGCAAAAATACAAACTTTGTAATATAAA
Found at i:71422587 original size:48 final size:48
Alignment explanation
Indices: 71422458--71422589 Score: 142
Period size: 48 Copynumber: 2.8 Consensus size: 48
71422448 CATGATTAAT
*
71422458 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAC
1 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
* * * * * *
71422506 GAGATCACGTGTAAGACCATAT-TCGAGATATGGC-TTCGGCATTGTTAA
1 GAGATCTCGTGTAAGACCATGTCT-GGGACATGGCATT-GGCATCGATAA
* * *
71422554 GTGATTTCGTATAAGACCATGTCTGGGACATGGCAT
1 GAGATCTCGTGTAAGACCATGTCTGGGACATGGCAT
71422590 CGAAATAAGG
Statistics
Matches: 66, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
47 3 0.05
48 61 0.92
49 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
GAGATCTCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAA
Found at i:71422635 original size:90 final size:90
Alignment explanation
Indices: 71422517--71422682 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
71422507 AGATCACGTG
* * * * * * *
71422517 TAAGACCATATTCGAGATATGGCTTCGGCATTG-TTAAGTGATTTCGTATAAGACCATGTCTGGG
1 TAAGACCATATTCGAGACATGGCGTCGGCACTGATT-AGAGACTTCGTATAAGACCATATCTAGG
71422581 ACATGGCATCGAAATAAGGTGCCGTA
65 ACATGGCATCGAAATAAGGTGCCGTA
* * *
71422607 TAAGACCATGTTTGAGACATGGCGTCGGCACTGATTCGAGACTTCGTATAAGACCATATCTAGGA
1 TAAGACCATATTCGAGACATGGCGTCGGCACTGATTAGAGACTTCGTATAAGACCATATCTAGGA
*
71422672 TATGGCATCGA
66 CATGGCATCGA
71422683 TGTGTGGTCC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 62 0.97
91 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (90 bp):
TAAGACCATATTCGAGACATGGCGTCGGCACTGATTAGAGACTTCGTATAAGACCATATCTAGGA
CATGGCATCGAAATAAGGTGCCGTA
Found at i:71422701 original size:90 final size:90
Alignment explanation
Indices: 71422515--71422706 Score: 206
Period size: 90 Copynumber: 2.1 Consensus size: 90
71422505 CGAGATCACG
* * * * * * * *
71422515 TGTAAGACCATATTCGAGATATGGCTTCGGCATTGTTAAGTGATTTCGTATAAGACCATGTCTGG
1 TGTAAGACCATGTTCGAGACATGGCGTCGGCACTGTTAAGAGACTTCGTATAAGACCATATCTAG
* *
71422580 GACATGGCATCGAAATAAGGTGCCG
66 GACATGGCATCGAAATAAGGTCCCA
* * *
71422605 TATAAGACCATGTTTGAGACATGGCGTCGGCACTGATT-CGAGACTTCGTATAAGACCATATCTA
1 TGTAAGACCATGTTCGAGACATGGCGTCGGCACTG-TTAAGAGACTTCGTATAAGACCATATCTA
* ** **
71422669 GGATATGGCATCGATGTGTGGTCCCA
65 GGACATGGCATCGAAATAAGGTCCCA
71422695 TGTAAGACCATG
1 TGTAAGACCATG
71422707 CCTAGGACAT
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 80 0.98
91 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (90 bp):
TGTAAGACCATGTTCGAGACATGGCGTCGGCACTGTTAAGAGACTTCGTATAAGACCATATCTAG
GACATGGCATCGAAATAAGGTCCCA
Found at i:71434760 original size:830 final size:830
Alignment explanation
Indices: 71433103--71434776 Score: 3316
Period size: 830 Copynumber: 2.0 Consensus size: 830
71433093 AAAATTATTC
71433103 AATTTAAATAAATATATACATATATATTTTTTATTTAGATTTAAATTAATAAATATGTAAGAATA
1 AATTTAAATAAATATATACATATATATTTTTTATTTAGATTTAAATTAATAAATATGTAAGAATA
71433168 GAGTTTGGCATAATAATTTTATTAATTTATTTAAATATATATGAACTAAATATAAAAATAAATAA
66 GAGTTTGGCATAATAATTTTATTAATTTATTTAAATATATATGAACTAAATATAAAAATAAATAA
71433233 AGTTGGCTAATTAAGTAATTAAATTTTAAACCTTTTAGATTGATTTTTTTAATAAAATTTACTAA
131 AGTTGGCTAATTAAGTAATTAAATTTTAAACCTTTTAGATTGATTTTTTTAATAAAATTTACTAA
71433298 TTTATAGATAAAACTATAATAAATTAATATTTAATAGAAAATATATATATAACTTTTAAAAGTTG
196 TTTATAGATAAAACTATAATAAATTAATATTTAATAGAAAATATATATATAACTTTTAAAAGTTG
71433363 TACACTTAAAAACATTATCATCTTCCCTTAGGATACAACTATTAATACATATTTGAGTTTGAAAT
261 TACACTTAAAAACATTATCATCTTCCCTTAGGATACAACTATTAATACATATTTGAGTTTGAAAT
71433428 TATGATAACTTAATAGGGTGACTCACAATCATGTGTACATTATATTTTTTTTAATTAAAAGATGT
326 TATGATAACTTAATAGGGTGACTCACAATCATGTGTACATTATATTTTTTTTAATTAAAAGATGT
71433493 TCATCAAAATAGAATTATAACTAAAATTTGTATAAAATTAAATTGAATTATTGACAACGTAATAA
391 TCATCAAAATAGAATTATAACTAAAATTTGTATAAAATTAAATTGAATTATTGACAACGTAATAA
71433558 ATTTCATAATTAGACTTATATAAATTACACAATCTATTAATAAAAAAATAGGTAACTTCTATATT
456 ATTTCATAATTAGACTTATATAAATTACACAATCTATTAATAAAAAAATAGGTAACTTCTATATT
71433623 TGCAAATATCATTTTTTTTAATATGATATTTTAATTATACTTTTAAGTTTTGAAATTATTTTAAT
521 TGCAAATATCATTTTTTTTAATATGATATTTTAATTATACTTTTAAGTTTTGAAATTATTTTAAT
71433688 TTACATGTTAAAGCACAATTCAATTAACGTCATAAATAAGTAATATTACAAATAATAAATAAAAT
586 TTACATGTTAAAGCACAATTCAATTAACGTCATAAATAAGTAATATTACAAATAATAAATAAAAT
71433753 AGTCATTAACATTTCATGACAAATTAGCAAATTATGATAGACAAGACAATAATCACAAGTTTCTT
651 AGTCATTAACATTTCATGACAAATTAGCAAATTATGATAGACAAGACAATAATCACAAGTTTCTT
71433818 CTTTAAAATTTCATAATTTGCATGCATATAAGCAGCTATTAGTGAAGGATAAAAAAATATCTTTT
716 CTTTAAAATTTCATAATTTGCATGCATATAAGCAGCTATTAGTGAAGGATAAAAAAATATCTTTT
71433883 AAAATTTTAAAATTAATTAAATTATTCTATTTAAATATATATTTTTTTTA
781 AAAATTTTAAAATTAATTAAATTATTCTATTTAAATATATATTTTTTTTA
71433933 AATTTAAATAAATATATACATATATATTTTTTATTTAGATTTAAATTAATAAATATGTAAGAATA
1 AATTTAAATAAATATATACATATATATTTTTTATTTAGATTTAAATTAATAAATATGTAAGAATA
71433998 GAGTTTGGCATAATAATTTTATTAATTTATTTAAATATATATGAACTAAATATAAAAATAAATAA
66 GAGTTTGGCATAATAATTTTATTAATTTATTTAAATATATATGAACTAAATATAAAAATAAATAA
71434063 AGTTGGCTAATTAAGTAATTAAATTTTAAACCTTTTAGATTGATTTTTTTAATAAAATTTACTAA
131 AGTTGGCTAATTAAGTAATTAAATTTTAAACCTTTTAGATTGATTTTTTTAATAAAATTTACTAA
71434128 TTTATAGATAAAACTATAATAAATTAATATTTAATAGAAAATATATATATAACTTTTAAAAGTTG
196 TTTATAGATAAAACTATAATAAATTAATATTTAATAGAAAATATATATATAACTTTTAAAAGTTG
71434193 TACACTTAAAAACATTATCATCTTCCCTTAGGATACAACTATTAATACATATTTGAGTTTGAAAT
261 TACACTTAAAAACATTATCATCTTCCCTTAGGATACAACTATTAATACATATTTGAGTTTGAAAT
71434258 TATGATAACTTAATAGGGTGACTCACAATCATGTGTACATTATA-TTTTTTTAATTAAAAGATGT
326 TATGATAACTTAATAGGGTGACTCACAATCATGTGTACATTATATTTTTTTTAATTAAAAGATGT
71434322 TCATCAAAATAGAATTATAACTAAAATTTGTATAAAATTAAATTGAATTATTGACAACGTAATAA
391 TCATCAAAATAGAATTATAACTAAAATTTGTATAAAATTAAATTGAATTATTGACAACGTAATAA
71434387 ATTTCATAATTAGACTTATATAAATTACACAATCTATTAATAAAAAAATAGGTAACTTCTATATT
456 ATTTCATAATTAGACTTATATAAATTACACAATCTATTAATAAAAAAATAGGTAACTTCTATATT
71434452 TGCAAATATCA-TTTTTTTAATATGATATTTTAATTATACTTTTAAGTTTTGAAATTATTTTAAT
521 TGCAAATATCATTTTTTTTAATATGATATTTTAATTATACTTTTAAGTTTTGAAATTATTTTAAT
71434516 TTACATGTTAAAGCACAATTCAATTAACGTCATAAATAAGTAATATTACAAATAATAAATAAAAT
586 TTACATGTTAAAGCACAATTCAATTAACGTCATAAATAAGTAATATTACAAATAATAAATAAAAT
*
71434581 AGTCATTAACATTTCATGACAAATTAGCAAATTATGATAGACAAGATAATAATCACAAGTTTCTT
651 AGTCATTAACATTTCATGACAAATTAGCAAATTATGATAGACAAGACAATAATCACAAGTTTCTT
71434646 CTTTAAAATTTCATAATTTGCATGCATATAAGCAGCTATTAGTGAAGGATAAAAAAAATATCTTT
716 CTTTAAAATTTCATAATTTGCATGCATATAAGCAGCTATTAGTGAAGGAT-AAAAAAATATCTTT
71434711 TAAAATTTTAAAATTAATTAAATTATTCTATTTAAATATATATTTTTTTTA
780 TAAAATTTTAAAATTAATTAAATTATTCTATTTAAATATATATTTTTTTTA
71434762 AATTTAAATAAATAT
1 AATTTAAATAAATAT
71434777 TTAAATAATA
Statistics
Matches: 842, Mismatches: 1, Indels: 3
1.00 0.00 0.00
Matches are distributed among these distances:
828 232 0.28
829 241 0.29
830 369 0.44
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (830 bp):
AATTTAAATAAATATATACATATATATTTTTTATTTAGATTTAAATTAATAAATATGTAAGAATA
GAGTTTGGCATAATAATTTTATTAATTTATTTAAATATATATGAACTAAATATAAAAATAAATAA
AGTTGGCTAATTAAGTAATTAAATTTTAAACCTTTTAGATTGATTTTTTTAATAAAATTTACTAA
TTTATAGATAAAACTATAATAAATTAATATTTAATAGAAAATATATATATAACTTTTAAAAGTTG
TACACTTAAAAACATTATCATCTTCCCTTAGGATACAACTATTAATACATATTTGAGTTTGAAAT
TATGATAACTTAATAGGGTGACTCACAATCATGTGTACATTATATTTTTTTTAATTAAAAGATGT
TCATCAAAATAGAATTATAACTAAAATTTGTATAAAATTAAATTGAATTATTGACAACGTAATAA
ATTTCATAATTAGACTTATATAAATTACACAATCTATTAATAAAAAAATAGGTAACTTCTATATT
TGCAAATATCATTTTTTTTAATATGATATTTTAATTATACTTTTAAGTTTTGAAATTATTTTAAT
TTACATGTTAAAGCACAATTCAATTAACGTCATAAATAAGTAATATTACAAATAATAAATAAAAT
AGTCATTAACATTTCATGACAAATTAGCAAATTATGATAGACAAGACAATAATCACAAGTTTCTT
CTTTAAAATTTCATAATTTGCATGCATATAAGCAGCTATTAGTGAAGGATAAAAAAATATCTTTT
AAAATTTTAAAATTAATTAAATTATTCTATTTAAATATATATTTTTTTTA
Found at i:71437363 original size:42 final size:42
Alignment explanation
Indices: 71437252--71437413 Score: 207
Period size: 42 Copynumber: 3.8 Consensus size: 42
71437242 TACCGTACCA
* * * **
71437252 ATGCCATATCCCAGACATGGTCTTACATGTACTCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* * *
71437294 ATGTCAATAGCCCAGCTATGGTCTTACATGAAGTCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
71437337 ATGCCATATCCCAGGTATGGTCTTACATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
71437379 ATGCCATATCCCAGATATGGTCTTATATGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCT
71437414 TAGTAACCCT
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 70 0.67
43 34 0.33
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:71444998 original size:39 final size:40
Alignment explanation
Indices: 71444875--71444998 Score: 146
Period size: 40 Copynumber: 3.1 Consensus size: 40
71444865 GACTAAGATT
* * **
71444875 CGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCAGGCTAAATCC
* *
71444915 CGAAGGCATTTATGCTAG-TGATTATATCCAGGCTAAGA-CC
1 CGAAGGCATTTGTGCGAGTTG-TTATATCCAGGCTAA-ATCC
*
71444955 CGAAGGCATTTGTGCGAGTTGTTATGTCC-GGCTAAATCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCAGGCTAAATCC
71444994 CGAAG
1 CGAAG
71444999 ATACTTGGGT
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 15 0.21
40 53 0.75
41 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGTTATATCCAGGCTAAATCC
Found at i:71445266 original size:22 final size:22
Alignment explanation
Indices: 71445226--71445267 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
71445216 GAATGTGCAT
*
71445226 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
71445248 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
71445268 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:71447224 original size:19 final size:19
Alignment explanation
Indices: 71447191--71447229 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
71447181 CCTACACAAC
*
71447191 AACATATAACAACAATCAA
1 AACATATAACAACAACCAA
71447210 AACATAT-ACATACAACCAA
1 AACATATAACA-ACAACCAA
71447229 A
1 A
71447230 TCAGCCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (19 bp):
AACATATAACAACAACCAA
Found at i:71448041 original size:42 final size:42
Alignment explanation
Indices: 71447880--71448033 Score: 193
Period size: 42 Copynumber: 3.6 Consensus size: 42
71447870 CACCGTACCA
** *
71447880 ATGCCATATCGTAGACATGGTCTTACATGTAA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AAGTCTCATATCG
* * *
71447922 ATGCCAATAGCCCAGCTATGGTCTTACATAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* * *
71447965 ATGCCATATCCCAGATATAGTCTTGCATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
*
71448007 ATGCCATATCCCATATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
71448034 CGTAGTCTTA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:71450736 original size:48 final size:48
Alignment explanation
Indices: 71450650--71450872 Score: 356
Period size: 48 Copynumber: 4.6 Consensus size: 48
71450640 TAAGGTCTCA
* * *
71450650 TGTAAGACCATGTTTGGGACATGGCAGCGGTGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
* * *
71450698 TGTGAGACCATGTCTGGGACATGGCATCGGCGTGGATATGTGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
* *
71450746 TGTAAGACCATGTTTGGGACATGGCATTGGCGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
**
71450794 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
71450842 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
71450873 ACTGACATGA
Statistics
Matches: 158, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
Found at i:71450914 original size:144 final size:144
Alignment explanation
Indices: 71450650--71450915 Score: 347
Period size: 144 Copynumber: 1.8 Consensus size: 144
71450640 TAAGGTCTCA
* *** *
71450650 TGTAAGACCATGTTTGGGACATGGCAGCGGTGTTGATATGTGAGCCAGTGTGAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCAGCAACGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
* * * * * **
71450715 GACATGGCATCGGCGTGGATATGTGAGCCAATGTAAGACCATGTTTGGGACATGGCATTGGCGTT
66 GACATGGCATCGGCCTGGACATGAGAGCCAATATAAGACCATATTCAGGACATGGCATTGGCGTT
71450780 GATATGTGAGCCAG
131 GATATGTGAGCCAG
*
71450794 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCAGCAACGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
** * *
71450859 GACATGGCATCGGCACT-GACATGAGATTTC-GTATAAGACCATATTCAGGATATGGCA
66 GACATGGCATCGGC-CTGGACATGAGA-GCCAATATAAGACCATATTCAGGACATGGCA
71450916 CCGATATGTG
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
144 101 0.98
145 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCAGCAACGTTGATATGTGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCCTGGACATGAGAGCCAATATAAGACCATATTCAGGACATGGCATTGGCGTT
GATATGTGAGCCAG
Found at i:71453488 original size:37 final size:35
Alignment explanation
Indices: 71453445--71453543 Score: 128
Period size: 37 Copynumber: 2.8 Consensus size: 35
71453435 ACGCCACTCA
71453445 TCTTTCAATTAACATCCTGCCACAACACTGAAACTT
1 TCTTTCAATTAACATCCTGCCACAACACTGAAAC-T
* * *
71453481 CTCTTTCAATTAAAATCCTGCCAC-ACGCTGATACT
1 -TCTTTCAATTAACATCCTGCCACAACACTGAAACT
* *
71453516 TCATTCAATTAACGTCCTGCCACAACAC
1 TCTTTCAATTAACATCCTGCCACAACAC
71453544 CCATACTTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
34 20 0.37
35 4 0.07
36 8 0.15
37 22 0.41
ACGTcount: A:0.31, C:0.32, G:0.07, T:0.29
Consensus pattern (35 bp):
TCTTTCAATTAACATCCTGCCACAACACTGAAACT
Found at i:71453534 original size:34 final size:36
Alignment explanation
Indices: 71453448--71453539 Score: 116
Period size: 34 Copynumber: 2.6 Consensus size: 36
71453438 CCACTCATCT
*
71453448 TTCAATTAACATCCTGCCACAACACTGAAACTTCTCT
1 TTCAATTAACATCCTGCCAC-ACACTGAAACTTCTCA
* * *
71453485 TTCAATTAAAATCCTGCCACACGCTGATAC-T-TCA
1 TTCAATTAACATCCTGCCACACACTGAAACTTCTCA
*
71453519 TTCAATTAACGTCCTGCCACA
1 TTCAATTAACATCCTGCCACA
71453540 ACACCCATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
34 21 0.43
35 1 0.02
36 8 0.16
37 19 0.39
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.29
Consensus pattern (36 bp):
TTCAATTAACATCCTGCCACACACTGAAACTTCTCA
Found at i:71464608 original size:3 final size:3
Alignment explanation
Indices: 71464600--71464624 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
71464590 GTATGTATTG
71464600 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
71464625 TTAGAACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:71465690 original size:7 final size:6
Alignment explanation
Indices: 71465670--71465700 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
71465660 TTCAACATAT
71465670 AAATAA AAATAA AAATAAA AAATAA AAATAA
1 AAATAA AAATAA AAAT-AA AAATAA AAATAA
71465701 TAGGTGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:71465692 original size:13 final size:13
Alignment explanation
Indices: 71465670--71465700 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
71465660 TTCAACATAT
71465670 AAAT-AAAAATAA
1 AAATAAAAAATAA
71465682 AAATAAAAAATAA
1 AAATAAAAAATAA
71465695 AAATAA
1 AAATAA
71465701 TAGGTGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:71472158 original size:63 final size:64
Alignment explanation
Indices: 71472078--71472247 Score: 186
Period size: 65 Copynumber: 2.7 Consensus size: 64
71472068 AGACATTATG
*
71472078 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
71472141 ATGTAGCTAGGTCGCATGCGG-GTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATG-GGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71472205 AA
63 AA
* * * *
71472207 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
71472248 GTACAGAGAG
Statistics
Matches: 87, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
63 31 0.36
64 7 0.08
65 42 0.48
66 5 0.06
67 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71493233 original size:21 final size:20
Alignment explanation
Indices: 71493182--71493224 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
71493172 TCTGGTTGTC
71493182 TAACAAACTCCACCCCCGAT
1 TAACAAACTCCACCCCCGAT
71493202 TAACAAACTCCACCCCCGAT
1 TAACAAACTCCACCCCCGAT
71493222 TAA
1 TAA
71493225 TCTTTCTCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.42, G:0.05, T:0.16
Consensus pattern (20 bp):
TAACAAACTCCACCCCCGAT
Found at i:71498360 original size:80 final size:80
Alignment explanation
Indices: 71498226--71498391 Score: 201
Period size: 80 Copynumber: 2.1 Consensus size: 80
71498216 CATTTGGATA
* * * *
71498226 AAAAATACAGCTAAAGATCGAGCATTAACAGCGCTTCTTGAAAAATACTACTATAGATCGAGC-A
1 AAAAACACAGCTAAAGATCGAGCATTAACAGCGCTTCTTAAAAAACACCACTATAGATCGA-CTA
*
71498290 TTAGTGGCGCTTTTTG
65 TTAGTGGCGCTTTCTG
* * * * *
71498306 AAAAACACCGCTATAGATCGAGCATTAGCGGCGCTT-TTCAAAAAACACCGCTATAGATCGACTA
1 AAAAACACAGCTAAAGATCGAGCATTAACAGCGCTTCTT-AAAAAACACCACTATAGATCGACTA
71498370 TTAGTGGCGCTTTCTG
65 TTAGTGGCGCTTTCTG
*
71498386 TAAAAC
1 AAAAAC
71498392 GCCGTAAAAA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 3 0.04
80 70 0.96
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (80 bp):
AAAAACACAGCTAAAGATCGAGCATTAACAGCGCTTCTTAAAAAACACCACTATAGATCGACTAT
TAGTGGCGCTTTCTG
Found at i:71498391 original size:40 final size:39
Alignment explanation
Indices: 71498226--71498391 Score: 172
Period size: 40 Copynumber: 4.2 Consensus size: 39
71498216 CATTTGGATA
* * * ***
71498226 AAAAATACAGCTAAAGATCGAGCATTAACAGCGCTTCTTG
1 AAAAACACCGCTATAGATCGAGCATTAGTGGCGCTT-TTG
* **
71498266 AAAAATACTACTATAGATCGAGCATTAGTGGCGCTTTTTG
1 AAAAACACCGCTATAGATCGAGCATTAGTGGCGC-TTTTG
* *
71498306 AAAAACACCGCTATAGATCGAGCATTAGCGGCGCTTTTCA
1 AAAAACACCGCTATAGATCGAGCATTAGTGGCGCTTTT-G
71498346 AAAAACACCGCTATAGATCGA-CTATTAGTGGCGCTTTCTG
1 AAAAACACCGCTATAGATCGAGC-ATTAGTGGCGCTTT-TG
*
71498386 TAAAAC
1 AAAAAC
71498392 GCCGTAAAAA
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
39 5 0.05
40 100 0.93
41 3 0.03
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (39 bp):
AAAAACACCGCTATAGATCGAGCATTAGTGGCGCTTTTG
Found at i:71498464 original size:114 final size:108
Alignment explanation
Indices: 71498327--71498628 Score: 320
Period size: 114 Copynumber: 2.7 Consensus size: 108
71498317 TATAGATCGA
* ** * * *
71498327 GCATTAGCGGCGCTTTTCAAAAAACACCGCTATAGATCGACTATTAGTGGCGCTTTCTGTAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCGCTATAGATCGACCATTAGCGGCGCTTTCTGAAAAAC
* *
71498392 GCCGTAAAAAAATTAAGCACAACGCCGTCGTTTTATGTTGAGCTTTAGT-
66 GCCGCAAAAAAATTAAGCACAAC-AC-T-G---TAT-TTGAGCTTTAGTG
* * *
71498441 GCATTAGCGGCACTTTTTGAAAAACACCGCTATAGATCAACCATTAGCGGCGCTTTTTGAAAAAT
1 GCATTAGCGGCACTTTTTGAAAAACACCGCTATAGATCGACCATTAGCGGCGCTTTCTGAAAAAC
*
71498506 GCCGCAAAAAAATTAAGCACAACACTGTCTTTGAGCTTTAGTG
66 GCCGCAAAAAAATTAAGCACAACACTGTATTTGAGCTTTAGTG
* * * * * ** * * *
71498549 GCATTAGCAGCACTTTTTGAAAAGCGCCGCTATAGATCGAGCTTTAGCGATGCTTTGTCAAAAAT
1 GCATTAGCGGCACTTTTTGAAAAACACCGCTATAGATCGACCATTAGCGGCGCTTTCTGAAAAAC
71498614 GCCG-AAAAATAATTA
66 GCCGCAAAAA-AATTA
71498629 TCTATCTATT
Statistics
Matches: 164, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
107 17 0.10
108 66 0.40
111 1 0.01
112 1 0.01
113 1 0.01
114 78 0.48
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (108 bp):
GCATTAGCGGCACTTTTTGAAAAACACCGCTATAGATCGACCATTAGCGGCGCTTTCTGAAAAAC
GCCGCAAAAAAATTAAGCACAACACTGTATTTGAGCTTTAGTG
Found at i:71505541 original size:47 final size:47
Alignment explanation
Indices: 71505457--71505959 Score: 763
Period size: 47 Copynumber: 10.6 Consensus size: 47
71505447 TATTTGAATA
71505457 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71505506 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71505553 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
71505602 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71505649 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
71505698 AATGTGAAATTGTTTATATGTGATAAAGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71505745 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71505792 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71505839 AATGTGGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
71505886 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71505933 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
71505960 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 36, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
47 315 0.76
49 99 0.24
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:71505569 original size:96 final size:96
Alignment explanation
Indices: 71505457--71505959 Score: 802
Period size: 96 Copynumber: 5.3 Consensus size: 96
71505447 TATTTGAATA
71505457 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
71505522 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71505553 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAATTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
71505618 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
71505649 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTTTA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
71505714 TATGTGATAAAGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
71505745 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
71505808 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
71505839 AATGTGGAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * *
71505902 TATGCGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
71505933 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
71505960 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 22, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
94 184 0.48
95 1 0.00
96 198 0.52
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:71506128 original size:37 final size:37
Alignment explanation
Indices: 71506078--71506185 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
71506068 CCGAGCTCTA
*
71506078 AAGACCCGATGACTACGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCTGGGT
*
71506115 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCTGGGT
* * *
71506152 AAGACCCGATAACTTCATGTGGAGATTTTGTCTG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCTG
71506186 AGCTAAAGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCTGGGT
Found at i:71507511 original size:40 final size:40
Alignment explanation
Indices: 71507467--71507676 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
71507457 GGGCTAAATC
71507467 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
71507507 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
71507547 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* ***
71507587 CCGAAGAGCATTCGTGCTAGTGATATATCCGTG-CTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCG-GACTAAGTT
* * * * * * * *
71507627 CCGAAGAGCATTTGTGCTGGTGTTATATTCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
71507667 CCGAAGAGCA
1 CCGAAGAGCA
71507677 ATCATGCTGG
Statistics
Matches: 157, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 155 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:71511826 original size:47 final size:47
Alignment explanation
Indices: 71511742--71512336 Score: 978
Period size: 47 Copynumber: 12.6 Consensus size: 47
71511732 TATTTGAATA
71511742 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71511791 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71511838 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
71511887 AATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71511934 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71511983 AATGTGAAA-TGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71512029 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71512076 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71512123 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71512170 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71512217 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
71512264 AATGTGAAAGTGTATATATGCGA-CAGGGCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71512310 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
71512337 TCCCGAAGGG
Statistics
Matches: 515, Mismatches: 25, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
46 80 0.16
47 335 0.65
48 2 0.00
49 98 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:71512556 original size:37 final size:37
Alignment explanation
Indices: 71512455--71512556 Score: 159
Period size: 37 Copynumber: 2.8 Consensus size: 37
71512445 CCGAGCTCTA
*
71512455 AAGACCCGATGACTACGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
*
71512492 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
* * *
71512529 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
71512557 CGTCTGAGCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
Found at i:71514704 original size:19 final size:19
Alignment explanation
Indices: 71514681--71514727 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
71514671 ATTTAATCTA
*
71514681 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
71514699 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
71514719 ATTTTTATT
1 ATTTTTATT
71514728 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:71515094 original size:43 final size:43
Alignment explanation
Indices: 71514986--71515097 Score: 140
Period size: 40 Copynumber: 2.7 Consensus size: 43
71514976 TAATTTTTAT
* * * *
71514986 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCGCCAC
* *
71515029 TAAAGGT--T-CTCTTTAGCGGCGTTTTTAGAAAAAGTGCCAC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCGCCAC
*
71515069 TAAAGGTCATGTTCTTTAGCAGCGTTTTT
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTT
71515098 CACATAAACG
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
40 33 0.57
41 1 0.02
42 1 0.02
43 23 0.40
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCGCCAC
Found at i:71523759 original size:27 final size:27
Alignment explanation
Indices: 71523729--71523827 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
71523719 GTCTTAGTGG
* *
71523729 ACTTTCCACGTTAGGTAGTCCTAACGA
1 ACTTTCCACATTAGATAGTCCTAACGA
* * * * *
71523756 ACTTCCCACATAAGATAGTCTTGACGG
1 ACTTTCCACATTAGATAGTCCTAACGA
*
71523783 ACTTTCCACATTAGATAGTACTGAA-G-
1 ACTTTCCACATTAGATAGTCCT-AACGA
**
71523809 ACTTTATACATTAGATAGT
1 ACTTTCCACATTAGATAGT
71523828 TCTGACAAAC
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
26 17 0.30
27 39 0.68
28 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (27 bp):
ACTTTCCACATTAGATAGTCCTAACGA
Found at i:71529457 original size:35 final size:35
Alignment explanation
Indices: 71529412--71529488 Score: 147
Period size: 35 Copynumber: 2.2 Consensus size: 35
71529402 GTTGTTTAGT
71529412 TAGGA-AATTTATTGAAAATGCCTTCAAGAAAAAC
1 TAGGAGAATTTATTGAAAATGCCTTCAAGAAAAAC
71529446 TAGGAGAATTTATTGAAAATGCCTTCAAGAAAAAC
1 TAGGAGAATTTATTGAAAATGCCTTCAAGAAAAAC
71529481 TAGGAGAA
1 TAGGAGAA
71529489 CTAACAACCT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 5 0.12
35 37 0.88
ACGTcount: A:0.47, C:0.10, G:0.18, T:0.25
Consensus pattern (35 bp):
TAGGAGAATTTATTGAAAATGCCTTCAAGAAAAAC
Found at i:71541656 original size:96 final size:94
Alignment explanation
Indices: 71541385--71541658 Score: 336
Period size: 96 Copynumber: 2.9 Consensus size: 94
71541375 GGTGAATTAC
* * * ** *
71541385 CGATGCCATGTTCAAAACATGGTCTTACACTGGCTCGCATGTTGAGGTTGATGCCATGTCACAGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATGAGGCCGATGCCATGTCCCAGA
* *
71541450 CATGGTCTTACACTAGCTCTCGTCTCATTGT
65 CATGGTCTTACACTGGCTCTC-TCACATTGT
* * * * * *
71541481 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGATGCGGCCGATCCCATGTCCAAGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATGAGGCCGATGCCATGTCCCAGA
71541546 CATGGTCTTACACTGGCTCT-TACAACATTG-
65 CATGGTCTTACACTGGCTCTCT-C-ACATTGT
*
71541576 CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAG
1 C-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-GAGGCCGATGCCATGTCCCAG
71541641 ACATGGTCTTACACTGGC
64 ACATGGTCTTACACTGGC
71541659 ACACATATCA
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
94 1 0.01
95 4 0.03
96 149 0.97
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATGAGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCTCACATTGT
Found at i:71541666 original size:48 final size:48
Alignment explanation
Indices: 71541384--71541667 Score: 282
Period size: 48 Copynumber: 5.9 Consensus size: 48
71541374 GGGTGAATTA
* * * * * * *
71541384 CCGATGCCATGTTCAAAACATGGTCTTACACTGGCTCGCATGTTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
** * * * * * *
71541432 TTGATGCCATGTCACAGACATGGTCTTACACTAGCTCTCGTCTCATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
* * *
71541480 TCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGAT-GCGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGTGG
* * * * * * *
71541528 CCGATCCCATGTCCAAGACATGGTCTTACACTGGCTCTTACAACATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
* * *
71541576 CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
* *
71541624 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
71541668 ACCCAAATGT
Statistics
Matches: 186, Mismatches: 48, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 184 0.99
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
Found at i:71545592 original size:41 final size:41
Alignment explanation
Indices: 71545458--71545717 Score: 355
Period size: 41 Copynumber: 6.3 Consensus size: 41
71545448 ACATAAAATT
* *
71545458 TGCTAGGC-ATAAAGCCT-AGTATAATACACCGACACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
71545499 TGCTAGGC-ATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
71545541 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
71545582 TGCTAGGCAATAACCCTGATTTAATACACCGGAACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
71545623 TGCTAGGCAATAACCCTGATATAATACACCGTCACAAAACC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
71545664 TGCTAGGCAATAAGCCTGATTTAATACACTGGCACAAAGCT
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
71545705 TGCTAGGCAATAA
1 TGCTAGGCAATAA
71545718 AGCCCGAATA
Statistics
Matches: 198, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
40 19 0.10
41 141 0.71
42 14 0.07
43 24 0.12
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:71552470 original size:27 final size:26
Alignment explanation
Indices: 71552422--71552481 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71552412 GCGAGGCTGC
*
71552422 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAG-TA
* * *
71552449 CAGATATTGTGGCTAGGCCACCAGTA
1 CAGATATTGTGACGAAGCCACCAGTA
71552475 CAGATAT
1 CAGATAT
71552482 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 9 0.31
27 20 0.69
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGTA
Found at i:71553273 original size:80 final size:81
Alignment explanation
Indices: 71553159--71553311 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 81
71553149 TACCCCACAA
* * *
71553159 GGGTATCTCGATAATTTTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG
1 GGGTATCTCGATAATTTCACCCTACAGGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAG
71553224 TAATTCTATCCTATAG
66 TAATTCTATCCTATAG
* * * * *
71553240 GGGTATTTCGGTAA-TTCACCCTACAGGGGTATTTCGGTAATTCTAACTTATAGGGGTATTTCAG
1 GGGTATCTCGATAATTTCACCCTACAGGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAG
71553304 TAATTCTA
66 TAATTCTA
71553312 CAACTTATCC
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 52 0.81
81 12 0.19
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (81 bp):
GGGTATCTCGATAATTTCACCCTACAGGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAG
TAATTCTATCCTATAG
Found at i:71553280 original size:53 final size:53
Alignment explanation
Indices: 71553141--71553309 Score: 203
Period size: 53 Copynumber: 3.2 Consensus size: 53
71553131 GGGGAAAAAT
* * * * * * *
71553141 GGTAATTTTACCCCACAAGGGTATCTCGATAATTTTACCCTACAGGGGTATTTC
1 GGTAA-TTCACCCTACAAGGGTATTTCGGTAATTCTAACCTATAGGGGTATTTC
* * *
71553195 GGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTC-ACCCTACAAGGGTATTTCGGTAATTCTAACCTATAGGGGTATTTC
* *
71553249 GGTAATTCACCCTACAGGGGTATTTCGGTAATTCTAACTTATAGGGGTATTTC
1 GGTAATTCACCCTACAAGGGTATTTCGGTAATTCTAACCTATAGGGGTATTTC
*
71553302 AGTAATTC
1 GGTAATTC
71553310 TACAACTTAT
Statistics
Matches: 99, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
53 50 0.51
54 49 0.49
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (53 bp):
GGTAATTCACCCTACAAGGGTATTTCGGTAATTCTAACCTATAGGGGTATTTC
Found at i:71553306 original size:27 final size:27
Alignment explanation
Indices: 71553141--71553312 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
71553131 GGGGAAAAAT
* * * *
71553141 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71553168 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71553195 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71553222 AGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
71553249 GGTAATTC-ACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71553275 GGTAATTCTAACTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71553302 AGTAATTCTAC
1 GGTAATTCTAC
71553313 AACTTATCCA
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 24 0.20
27 99 0.80
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:71554666 original size:15 final size:14
Alignment explanation
Indices: 71554643--71554678 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
71554633 AAATAATCCA
*
71554643 AATAAAAATGAATT
1 AATAAAAATGAATG
71554657 AATAAGAAATGAATG
1 AATAA-AAATGAATG
71554672 AATAAAA
1 AATAAAA
71554679 GAAGAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (14 bp):
AATAAAAATGAATG
Found at i:71555981 original size:24 final size:24
Alignment explanation
Indices: 71555923--71555990 Score: 111
Period size: 23 Copynumber: 2.9 Consensus size: 24
71555913 GAAATGACTT
*
71555923 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
*
71555947 -GACACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
71555970 TGGCACTATGTGTGCGGATTT
1 TGGCACTATGTGTGCGGATTT
71555991 CAATGTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 21 0.52
24 19 0.47
ACGTcount: A:0.19, C:0.13, G:0.31, T:0.37
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGTA
Found at i:71556003 original size:24 final size:24
Alignment explanation
Indices: 71555952--71556004 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
71555942 TTGTAGACAC
** *
71555952 TATGTGTGCGGATTTGTATGGCAC
1 TATGTGTGCGGATTTCAATGGCAA
*
71555976 TATGTGTGCGGATTTCAATGTCAA
1 TATGTGTGCGGATTTCAATGGCAA
71556000 TATGT
1 TATGT
71556005 ATGTGAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.11, G:0.28, T:0.40
Consensus pattern (24 bp):
TATGTGTGCGGATTTCAATGGCAA
Found at i:71563014 original size:27 final size:27
Alignment explanation
Indices: 71562985--71563236 Score: 283
Period size: 27 Copynumber: 9.4 Consensus size: 27
71562975 GGGGAAAATG
* * * *
71562985 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
71563012 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
71563039 GTATTTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
71563066 GTAATTCTATCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
71563093 ATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
71563120 GTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
** * *
71563147 GTAATTCTATACTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
71563174 GTAA-TCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
71563200 ATAATTCTACCTTACAGGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
71563226 GATAATTCTAC
1 G-TAATTCTAC
71563237 AACTTATCCA
Statistics
Matches: 195, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 21 0.11
27 174 0.89
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:71563128 original size:81 final size:81
Alignment explanation
Indices: 71563013--71563235 Score: 333
Period size: 81 Copynumber: 2.8 Consensus size: 81
71563003 GGTATCTCGG
* * * *
71563013 TAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTCAGTAATTCTATCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTATAC
71563078 TACAGGGGTATTTCAA
66 TACAGGGGTATTTCAA
*
71563094 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTATAC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTATAC
**
71563159 TACAGGGGTATTTCGG
66 TACAGGGGTATTTCAA
* * *
71563175 TAA-TCTACCTTACAGGGGTATTTCAATAATTCTACCTTACAGGGGTATTTC-GATAATTCTA
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAG-TAATTCTA
71563236 CAACTTATCC
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 1 0.01
80 52 0.40
81 77 0.59
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTATAC
TACAGGGGTATTTCAA
Found at i:71567915 original size:68 final size:64
Alignment explanation
Indices: 71567805--71567961 Score: 145
Period size: 68 Copynumber: 2.4 Consensus size: 64
71567795 ATACAGATAG
* ** * * *
71567805 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGT-GTAAAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCGCATGCGTGATACTAAGTGCACACCATGTAG-AAAAGAGAGCT--AAGACA
71567869 TTA
63 -TA
* * * * * **
71567872 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATA
1 T-ATGTAGCTAGGTCGCATGCGTGATACTAAGTGCACACCATGTAGAAAAGAGAGCTAAGACATA
71567937 TATGTAGCTAGGTCGCATGCGTGAT
1 TATGTAGCTAGGTCGCATGCGTGAT
71567962 TCCAGGTAAA
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
64 23 0.31
65 3 0.04
66 3 0.04
67 1 0.01
68 44 0.59
69 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGCGTGATACTAAGTGCACACCATGTAGAAAAGAGAGCTAAGACATA
Found at i:71567954 original size:64 final size:63
Alignment explanation
Indices: 71567874--71568058 Score: 185
Period size: 64 Copynumber: 2.8 Consensus size: 63
71567864 AGACATTATG
* * *
71567874 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
71567938 ATGTAGCTAGGTCGCATGCGTGATTCCAGGTAAAGGACAACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGATACTA-GT---GTAC-ACCATGTAGACAAGAGAGCTACGAGA
71568003 TAA
61 TAA
* * * *
71568006 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-AGTGTACACCATGTAG-ACAAGAGAGC
71568059 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 13
0.77 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 17 0.17
64 29 0.29
67 23 0.23
68 29 0.29
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71571089 original size:18 final size:19
Alignment explanation
Indices: 71571047--71571095 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
71571037 TTATTTTCTC
*
71571047 AAAAATTTAA-AAATTATT
1 AAAAATTTAATAAATTATA
*
71571065 AATAATTTAATAAATTA-A
1 AAAAATTTAATAAATTATA
*
71571083 AAAAATTAAATAA
1 AAAAATTTAATAA
71571096 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTTAATAAATTATA
Found at i:71584714 original size:25 final size:25
Alignment explanation
Indices: 71584638--71584715 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
71584628 CCATGTCCCA
*
71584638 AACATGGTCTTACACTGGTTCTCAC
1 AACATGGTCTTACACAGGTTCTCAC
* ** *
71584663 AACAT--CCTTGATGCTATGTTC-CA-
1 AACATGGTCTT-ACAC-AGGTTCTCAC
71584686 AACATGGTCTTACACAGGTTCTCAC
1 AACATGGTCTTACACAGGTTCTCAC
71584711 AACAT
1 AACAT
71584716 CCCTGATGCC
Statistics
Matches: 38, Mismatches: 9, Indels: 12
0.64 0.15 0.20
Matches are distributed among these distances:
23 13 0.34
24 8 0.21
25 17 0.45
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (25 bp):
AACATGGTCTTACACAGGTTCTCAC
Found at i:71584757 original size:48 final size:47
Alignment explanation
Indices: 71584526--71584757 Score: 241
Period size: 48 Copynumber: 4.9 Consensus size: 47
71584516 GGATGAATTG
* *** **
71584526 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATGTCGAGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAAC-ATC
* * * ** * *
71584574 CCAATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATCTCCTTG
1 CCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCA-CAACATC
* *
71584622 CCGATGCCATGTCCCAAACATGGTCTTACACTGGTTCTCACAACATC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAACATC
* * * *
71584669 CTTGATGCTATGTTCCAAACATGGTCTTACACAGGTTCTCACAACATC
1 C-CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAACATC
71584717 CCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA
1 CC-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA
71584758 TATTACCCAA
Statistics
Matches: 153, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
47 7 0.05
48 143 0.93
49 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAACATC
Found at i:71586193 original size:26 final size:26
Alignment explanation
Indices: 71586153--71586226 Score: 105
Period size: 25 Copynumber: 2.9 Consensus size: 26
71586143 CCTTTACATA
71586153 TATGCTCACATGAGCTATGAAAAGAG
1 TATGCTCACATGAGCTATGAAAAGAG
* **
71586179 TATGCTCACACGAGCCGTG-AAAGAG
1 TATGCTCACATGAGCTATGAAAAGAG
*
71586204 TATGCTTACATGAGCTATGAAAA
1 TATGCTCACATGAGCTATGAAAA
71586227 TGGGTCACCT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
25 21 0.52
26 19 0.47
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
TATGCTCACATGAGCTATGAAAAGAG
Found at i:71596775 original size:26 final size:26
Alignment explanation
Indices: 71596736--71596880 Score: 107
Period size: 26 Copynumber: 5.4 Consensus size: 26
71596726 TATATACCTC
* *
71596736 ACAT-AGGGAAAAAAAGTCATCTTACT
1 ACATAAGGGCAAAATAGTCAT-TTACT
* * * **
71596762 ACATAAGGGTAAAACAATCATTTTTT
1 ACATAAGGGCAAAATAGTCATTTACT
* *
71596788 ATCATATGTAGGGC-AAAGAGTCATTCTACC
1 A-CATA---AGGGCAAAATAGTCATT-TACT
71596818 ACATAAGGGCAAAATAGTCATTTTACT
1 ACATAAGGGCAAAATAGTCA-TTTACT
*
71596845 A-ATAAGGGCAAAATAGTCATTTTACC
1 ACATAAGGGCAAAATAGTCA-TTTACT
71596871 ACATAAGGGC
1 ACATAAGGGC
71596881 TAAACAATCA
Statistics
Matches: 96, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
26 38 0.40
27 37 0.39
28 2 0.02
29 13 0.14
30 6 0.06
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (26 bp):
ACATAAGGGCAAAATAGTCATTTACT
Found at i:71596891 original size:27 final size:27
Alignment explanation
Indices: 71596735--71596895 Score: 130
Period size: 27 Copynumber: 6.0 Consensus size: 27
71596725 ATATATACCT
* * *
71596735 CACAT-AGGGAAAAAAAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * * *
71596761 TACATAAGGGTAAAACAATCATTTTTTAT
1 CACATAAGGGCAAAATAGTCA--TTTTAC
* * * *
71596790 CATATGTAGGGC-AAAGAGTCATTCTAC
1 CACAT-AAGGGCAAAATAGTCATTTTAC
71596817 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
71596844 TA-ATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
71596870 CACATAAGGGCTAAACAATCATTTTA
1 CACATAAGGGCAAAATAGTCATTTTA
71596896 TCAATTTTTG
Statistics
Matches: 106, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
26 34 0.32
27 54 0.51
29 14 0.13
30 4 0.04
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:71604484 original size:13 final size:13
Alignment explanation
Indices: 71604466--71604491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71604456 AGGATTTGTT
71604466 TTAACTAAACTAA
1 TTAACTAAACTAA
71604479 TTAACTAAACTAA
1 TTAACTAAACTAA
71604492 GAATGCACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:71605415 original size:48 final size:48
Alignment explanation
Indices: 71605304--71605416 Score: 131
Period size: 48 Copynumber: 2.3 Consensus size: 48
71605294 ATACCCGTGC
* *
71605304 GACACGCCCGTGTGAGTTGGCTTAGGCCGTGTTTAAAGTCTGCTAAATA
1 GACACGGCTGTGTG-GTTGGCTTAGGCCGTGTTTAAAGTCTGCTAAATA
* * *
71605353 GACACGGCTATGTGGTGTGGCTTAGGCTGTG-TTACAAG-CTGTTAAATA
1 GACACGGCTGTGTGGT-TGGCTTAGGCCGTGTTTA-AAGTCTGCTAAATA
*
71605401 GACACGGGTGTGTGGT
1 GACACGGCTGTGTGGT
71605417 CTACCTGTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
48 28 0.51
49 27 0.49
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (48 bp):
GACACGGCTGTGTGGTTGGCTTAGGCCGTGTTTAAAGTCTGCTAAATA
Found at i:71613545 original size:13 final size:13
Alignment explanation
Indices: 71613527--71613552 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71613517 AGGATTTGTT
71613527 TTAACTAAACTAA
1 TTAACTAAACTAA
71613540 TTAACTAAACTAA
1 TTAACTAAACTAA
71613553 GAATGCACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACTAAACTAA
Found at i:71615868 original size:27 final size:26
Alignment explanation
Indices: 71615840--71616018 Score: 128
Period size: 27 Copynumber: 6.7 Consensus size: 26
71615830 ATTTTACCCT
* *
71615840 ACAGGGGTATTTTGGTAATTTTACACT
1 ACAGGGGTATTTCGGTAATTTTACA-A
* ** *
71615867 ACA-AGGTATTTCAATAATTTTATAA
1 ACAGGGGTATTTCGGTAATTTTACAA
** * * * *
71615892 ATTGGGGGAATTTAGGTAATTTGATAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
*
71615919 ACCAGAGGTATTTCGGTAATTTTACAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
* * *
71615946 TCTAGGGATATTTTGGTAATTTTACAA
1 AC-AGGGGTATTTCGGTAATTTTACAA
*
71615973 ATTA-GGGTATTTCGGTAATTTTACAA
1 A-CAGGGGTATTTCGGTAATTTTACAA
*
71615999 ATCAGGGGTATTTCAGTAAT
1 A-CAGGGGTATTTCGGTAAT
71616019 CTAAACAGTT
Statistics
Matches: 115, Mismatches: 32, Indels: 10
0.73 0.20 0.06
Matches are distributed among these distances:
25 1 0.01
26 40 0.35
27 74 0.64
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (26 bp):
ACAGGGGTATTTCGGTAATTTTACAA
Found at i:71619233 original size:39 final size:39
Alignment explanation
Indices: 71619179--71619304 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
71619169 TTCAGTGATG
*
71619179 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
71619218 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* ** *
71619257 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
71619296 TATGTCCGG
1 TATATCCGG
71619305 GCTAAAGTCC
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:71619331 original size:78 final size:78
Alignment explanation
Indices: 71619179--71619338 Score: 180
Period size: 78 Copynumber: 2.1 Consensus size: 78
71619169 TTCAGTGATG
* * ** * ** *
71619179 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
*
71619244 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* *
71619257 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAAG
1 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTTAAAGT-CCGCAAG
*
71619321 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
71619335 TATA
1 TATA
71619339 CCAAGTTTAA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
77 5 0.07
78 63 0.93
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
TATGAGCTGGAAT
Found at i:71621191 original size:24 final size:24
Alignment explanation
Indices: 71621163--71621229 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
71621153 TTCCTCAAAT
* *
71621163 CTCTCCATAAATCACTCCTTGATT
1 CTCTCCATAAATCACTCCATGATA
* *
71621187 TTCTCC-TAATATCTCTCCATGATA
1 CTCTCCATAA-ATCACTCCATGATA
* *
71621211 CACTCTATAAATCACTCCA
1 CTCTCCATAAATCACTCCA
71621230 ACCTCCCATT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
23 3 0.09
24 27 0.82
25 3 0.09
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (24 bp):
CTCTCCATAAATCACTCCATGATA
Found at i:71624968 original size:15 final size:15
Alignment explanation
Indices: 71624948--71624978 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71624938 ACTTGAACTA
71624948 AGTTGTGTGATAAAT
1 AGTTGTGTGATAAAT
71624963 AGTTGTGTGATAAAT
1 AGTTGTGTGATAAAT
71624978 A
1 A
71624979 ATCTAAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (15 bp):
AGTTGTGTGATAAAT
Found at i:71625237 original size:40 final size:39
Alignment explanation
Indices: 71625182--71625333 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 39
71625172 GATACTTGAG
* *
71625182 GAATGTTATCTGGGCTTAAAGACCTGCAGGCTTCGTGCTA
1 GAATG-TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTA
* *
71625222 GAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTG
1 GAA-TGTATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTA
*
71625262 GAATGTTATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTA
1 GAATG-TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTA
71625302 GAACTGTATCCGGGCTTAAAGACCCGCAGGCT
1 GAA-TGTATCCGGGCTTAAAGACCCGCAGGCT
71625334 ACGAGCTGGT
Statistics
Matches: 99, Mismatches: 8, Indels: 10
0.85 0.07 0.09
Matches are distributed among these distances:
39 3 0.03
40 91 0.92
41 5 0.05
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
GAATGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTA
Found at i:71625314 original size:80 final size:80
Alignment explanation
Indices: 71625181--71625334 Score: 272
Period size: 80 Copynumber: 1.9 Consensus size: 80
71625171 TGATACTTGA
* * * *
71625181 GGAATGTTATCTGGGCTTAAAGACCTGCAGGCTTCGTGCTAGAATTGTATCCGGGCTTAAAGACC
1 GGAATGTTATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTAGAACTGTATCCGGGCTTAAAGACC
71625246 CGCAGGCTATATGCT
66 CGCAGGCTATATGCT
71625261 GGAATGTTATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTAGAACTGTATCCGGGCTTAAAGACC
1 GGAATGTTATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTAGAACTGTATCCGGGCTTAAAGACC
71625326 CGCAGGCTA
66 CGCAGGCTA
71625335 CGAGCTGGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
GGAATGTTATCCGGGCTTAAAGACCCGCAAGCTTCGTGCTAGAACTGTATCCGGGCTTAAAGACC
CGCAGGCTATATGCT
Found at i:71626781 original size:20 final size:19
Alignment explanation
Indices: 71626735--71626781 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
71626725 GTAATTCATG
*
71626735 TTTAATTGCTGAATGGAGT
1 TTTAATTGATGAATGGAGT
*
71626754 TTTGAATTGATAGAATTGAGT
1 TTT-AATTGAT-GAATGGAGT
71626775 TTTAATT
1 TTTAATT
71626782 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (19 bp):
TTTAATTGATGAATGGAGT
Found at i:71632244 original size:40 final size:40
Alignment explanation
Indices: 71632170--71632351 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
71632160 AACCCAAGTA
* *
71632170 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
71632209 CCTTCGGGTCTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
71632249 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
71632289 CCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
71632329 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
71632352 CATTCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 120 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:71634480 original size:23 final size:22
Alignment explanation
Indices: 71634450--71634493 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
71634440 TCTCAATTCA
*
71634450 TAAATAAATTCATACCAAAACT
1 TAAATAAAATCATACCAAAACT
*
71634472 TAAACTAAAATCATACCTAAAC
1 TAAA-TAAAATCATACCAAAAC
71634494 ATACGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATAAAATCATACCAAAACT
Found at i:71648701 original size:19 final size:19
Alignment explanation
Indices: 71648677--71648714 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71648667 ATGCATAGAA
71648677 GTGCTTTAGTTTAGGGTCG
1 GTGCTTTAGTTTAGGGTCG
71648696 GTGCTTTAGTTTAGGGTCG
1 GTGCTTTAGTTTAGGGTCG
71648715 ACCAAACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.37, T:0.42
Consensus pattern (19 bp):
GTGCTTTAGTTTAGGGTCG
Found at i:71652476 original size:41 final size:41
Alignment explanation
Indices: 71652419--71652498 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
71652409 ATTGCTCAGA
* *
71652419 GGATAGGTGCTGGAATTAATTAACAACACGTCAACAAAAAT
1 GGATAGGTGCTAGAATTAATTAACAACACATCAACAAAAAT
*
71652460 GGATAGGTGTTAGAATTAATTAACAACACATCAACAAAA
1 GGATAGGTGCTAGAATTAATTAACAACACATCAACAAAA
71652499 TATAACGTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (41 bp):
GGATAGGTGCTAGAATTAATTAACAACACATCAACAAAAAT
Found at i:71652692 original size:13 final size:13
Alignment explanation
Indices: 71652674--71652707 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
71652664 CATACATTTT
*
71652674 ATATTCATTTCTC
1 ATATTCAATTCTC
71652687 ATATTCAATTCTC
1 ATATTCAATTCTC
71652700 ATATTCAA
1 ATATTCAA
71652708 ACAAAAGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATTCAATTCTC
Found at i:71653087 original size:13 final size:13
Alignment explanation
Indices: 71653069--71653102 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
71653059 ACTAACTTGT
71653069 GCCACACGACCAA
1 GCCACACGACCAA
71653082 GCCACACGACCAA
1 GCCACACGACCAA
71653095 GCCACACG
1 GCCACACG
71653103 TCCGTGTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.47, G:0.18, T:0.00
Consensus pattern (13 bp):
GCCACACGACCAA
Found at i:71654995 original size:24 final size:24
Alignment explanation
Indices: 71654941--71655031 Score: 101
Period size: 24 Copynumber: 3.7 Consensus size: 24
71654931 GACTCACCAA
* *
71654941 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCGTAAGAGCTTA-CTAT-TATC
71654967 AGCTCGTAAGAGCTTACTATTATC
1 AGCTCGTAAGAGCTTACTATTATC
* * * *
71654991 AGCTCATAAGAACTTACTGTTTTC
1 AGCTCGTAAGAGCTTACTATTATC
*
71655015 AGCTCGTTAGAGCTTAC
1 AGCTCGTAAGAGCTTAC
71655032 CGTTTCAGCT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
24 38 0.68
25 3 0.05
26 15 0.27
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACTATTATC
Found at i:71655027 original size:48 final size:47
Alignment explanation
Indices: 71654965--71655056 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 47
71654955 TACCGATATA
*
71654965 TCAGCTCGTAAGAGCTTACTATTATCAGCTC-ATAAGAACTTACTGTTT
1 TCAGCTCGTAAGAGCTTACCATT-TCAGCTCAAT-AGAACTTACTGTTT
* * *
71655013 TCAGCTCGTTAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTG
1 TCAGCTCGTAAGAGCTTACCATTTCAGCTCAATAGAACTTACTG
71655057 ATCATAGCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
47 17 0.44
48 22 0.56
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (47 bp):
TCAGCTCGTAAGAGCTTACCATTTCAGCTCAATAGAACTTACTGTTT
Found at i:71655036 original size:24 final size:24
Alignment explanation
Indices: 71654941--71655054 Score: 97
Period size: 24 Copynumber: 4.7 Consensus size: 24
71654931 GACTCACCAA
71654941 AGCTCG-TATGAGCTTACCGATATATC
1 AGCTCGTTA-GAGCTTACCG-T-TATC
* **
71654967 AGCTCGTAAGAGCTTACTATTATC
1 AGCTCGTTAGAGCTTACCGTTATC
* * * * *
71654991 AGCTCATAAGAACTTACTGTTTTC
1 AGCTCGTTAGAGCTTACCGTTATC
71655015 AGCTCGTTAGAGCTTACCGTT-TC
1 AGCTCGTTAGAGCTTACCGTTATC
**
71655038 AGCTCAATAGAGCTTAC
1 AGCTCGTTAGAGCTTAC
71655055 TGATCATAGC
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
23 17 0.23
24 41 0.55
25 1 0.01
26 14 0.19
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (24 bp):
AGCTCGTTAGAGCTTACCGTTATC
Found at i:71655066 original size:47 final size:48
Alignment explanation
Indices: 71654964--71655066 Score: 113
Period size: 47 Copynumber: 2.2 Consensus size: 48
71654954 TTACCGATAT
* *
71654964 ATCAGCTCGTAAGAGCTTACTATTATCAGCTCATAAGAACTTACTGTT
1 ATCAGCTCGTAAGAGCTTACCATTATCAGCTCATAAGAACTTACTGTC
* * * *
71655012 TTCAGCTCGTTAGAGCTTACCGTT-TCAGCTCA-ATAGAGCTTACTGATC
1 ATCAGCTCGTAAGAGCTTACCATTATCAGCTCATA-AGAACTTACTG-TC
71655060 AT-AGCTC
1 ATCAGCTC
71655067 AAAAGAGCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
46 1 0.02
47 23 0.50
48 22 0.48
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (48 bp):
ATCAGCTCGTAAGAGCTTACCATTATCAGCTCATAAGAACTTACTGTC
Found at i:71659032 original size:30 final size:30
Alignment explanation
Indices: 71658996--71659056 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
71658986 TCTTTAATAC
* * *
71658996 AAACTTTGGTAAAATTATATTTTTGCCCCT
1 AAACTTTGGCAAAATTAAACTTTTGCCCCT
* *
71659026 AAACTTTTGCATAATTAAACTTTTGCCCCT
1 AAACTTTGGCAAAATTAAACTTTTGCCCCT
71659056 A
1 A
71659057 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGCAAAATTAAACTTTTGCCCCT
Found at i:71664318 original size:21 final size:21
Alignment explanation
Indices: 71664294--71664335 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
71664284 TCATCAGATC
*
71664294 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
71664315 TACATGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
71664336 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.40, T:0.21
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:71667714 original size:55 final size:55
Alignment explanation
Indices: 71667630--71667776 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 55
71667620 GGATAAGTTG
* * * * * *
71667630 TAGAATTACCGAAATACCCCTATCGGGTAGAATTTACCGAAATACCCCTGTACGA
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTTACCAAAATACCCCTATACGA
* * *
71667685 TAGAAATACTGAAATACCCTTGTAGGGTAGAA-ATACCAAAATACCCCTATAGGA
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTTACCAAAATACCCCTATACGA
* * * * *
71667739 CATAATTACTGAGATACCCTTGTGGGGTA-AAATTACCA
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTTACCA
71667777 TTTTGCCTCT
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.03
54 47 0.62
55 27 0.36
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (55 bp):
TAGAATTACTGAAATACCCTTGTAGGGTAGAATTTACCAAAATACCCCTATACGA
Done.