Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 22 of 290
Found at i:7224814 original size:28 final size:28
Alignment explanation
Indices: 7224783--7224881 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
7224773 AACCATAATT
*
7224783 CATAAACCCTAAACCCCTAACCCTATAC
1 CATAAACCCTAAACCCATAACCCTATAC
* * *
7224811 CATAAACCATAAAACCATAAACCT-TAC
1 CATAAACCCTAAACCCATAACCCTATAC
*
7224838 ACATAAACCCTAAACCCATAACACGTA-AC
1 -CATAAACCCTAAACCCATAAC-CCTATAC
* *
7224867 CTTTAACCCTAAACC
1 CATAAACCCTAAACC
7224882 TTAAACACCA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.05
28 51 0.88
29 4 0.07
ACGTcount: A:0.44, C:0.36, G:0.01, T:0.18
Consensus pattern (28 bp):
CATAAACCCTAAACCCATAACCCTATAC
Found at i:7225207 original size:16 final size:16
Alignment explanation
Indices: 7225170--7225217 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
7225160 CTAACCCCTG
*
7225170 ACCCC-TAACCCTTAA
1 ACCCCATAATCCTTAA
7225185 A--CCATAATCCTTAA
1 ACCCCATAATCCTTAA
*
7225199 ACCCCATAATCCCTAA
1 ACCCCATAATCCTTAA
7225215 ACC
1 ACC
7225218 TTAAAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 2 0.07
14 10 0.36
15 1 0.04
16 15 0.54
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.21
Consensus pattern (16 bp):
ACCCCATAATCCTTAA
Found at i:7225439 original size:24 final size:23
Alignment explanation
Indices: 7225404--7225455 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
7225394 TTTAAAATTA
7225404 TTTTAAATAATAGTATTT-TATCAT
1 TTTTAAATAATA-TATTTCTAT-AT
*
7225428 TTTTAACA-AATATTTTTCTATAT
1 TTTTAA-ATAATATATTTCTATAT
7225451 TTTTA
1 TTTTA
7225456 CTTTCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 11 0.44
24 13 0.52
25 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTAAATAATATATTTCTATAT
Found at i:7234474 original size:119 final size:119
Alignment explanation
Indices: 7234258--7234498 Score: 437
Period size: 119 Copynumber: 2.0 Consensus size: 119
7234248 TGTACTTAAA
* *
7234258 TTTATGTCTTTTTACATTGACAACAATATCGATGCCAACTGTGTTAAAACTCAAATAACAAATTT
1 TTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATAACAAATTT
7234323 ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
66 ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
* *
7234377 TTTAAGTCTTTTTACATTGACAACAATATCGATGTCAACTGAGTTAAAACTCAAATGACAAATTT
1 TTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATAACAAATTT
*
7234442 ATTAATGCAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
66 ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
7234496 TTT
1 TTT
7234499 TCTTGAATAC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 117 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.28
Consensus pattern (119 bp):
TTTAAGTCTTTTTACATTGACAACAATATCGATGCCAACTGAGTTAAAACTCAAATAACAAATTT
ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
Found at i:7240038 original size:75 final size:76
Alignment explanation
Indices: 7239878--7240091 Score: 324
Period size: 75 Copynumber: 2.8 Consensus size: 76
7239868 TTTCTGTAAA
* * * *
7239878 TATTCAACTAAATCAATAATAAATAAAACATAATTATAAATAATATAATTAAAAACTTAAGTAAC
1 TATTCACCTAAATGAATGATAAATAAAACATAATTATAAATAATATAATTAAAAACTTAAATAAC
7239943 TTTTTTTCAAT
66 TTTTTTTCAAT
*
7239954 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAAT-ATATAATTAAAAACTTAAATAAC
1 TATTCACCTAAATGAATGATAAATAAAACATAATTATAAATAATATAATTAAAAACTTAAATAAC
7240018 ATTTTTTT-AAT
66 -TTTTTTTCAAT
* * * *
7240029 TATTTACCTAAATGAATGGTAAATAAAACATAATTATAAATAATATAACTAAAAATTTAAATA
1 TATTCACCTAAATGAATGATAAATAAAACATAATTATAAATAATATAATTAAAAACTTAAATA
7240092 GCATATTGAA
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
75 63 0.50
76 63 0.50
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.36
Consensus pattern (76 bp):
TATTCACCTAAATGAATGATAAATAAAACATAATTATAAATAATATAATTAAAAACTTAAATAAC
TTTTTTTCAAT
Found at i:7246008 original size:39 final size:39
Alignment explanation
Indices: 7245954--7246031 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
7245944 AAAGAAAAGG
7245954 GAAATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
1 GAAATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
*
7245993 GAAATTTGTTCATTGAGAATTGATAATGCGCTGAATTGA
1 GAAATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
7246032 CATATTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (39 bp):
GAAATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
Found at i:7248376 original size:30 final size:30
Alignment explanation
Indices: 7248308--7248376 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 30
7248298 CTAATTGTTG
*
7248308 AAAATTCAATTTAAGCTATAAAATCAAATC
1 AAAATTCAATTTAAGCTATAAAATCAAATA
* * *
7248338 AAATTTCAATTT-AGTCT-TGAAATTAAATTA
1 AAAATTCAATTTAAG-CTATAAAATCAAA-TA
7248368 AAAATTCAA
1 AAAATTCAA
7248377 ACACAAAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 10 0.31
30 22 0.69
ACGTcount: A:0.51, C:0.10, G:0.04, T:0.35
Consensus pattern (30 bp):
AAAATTCAATTTAAGCTATAAAATCAAATA
Found at i:7248602 original size:42 final size:42
Alignment explanation
Indices: 7248509--7248654 Score: 177
Period size: 43 Copynumber: 3.4 Consensus size: 42
7248499 AGAAAAATGC
* * * *
7248509 CGCTATAGAACATAACCTTTAGTGGCGCTTTTTTCACAAA-TA
1 CGCTATAGAACATGACCTTTAGCGGC-CTTTTTCCACAAACGA
*
7248551 CCGCTATAGAACATGACCTTTAGCGGCCCTTTTCCACAAACGA
1 -CGCTATAGAACATGACCTTTAGCGGCCTTTTTCCACAAACGA
* * * *
7248594 CGTTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGG
1 CGCTATAGAACATGACCTTTAGCGGCCTTTTT-CCACAAACGA
7248637 CGCTATAGAACATGACCT
1 CGCTATAGAACATGACCT
7248655 ACGCCATTAT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 39 0.44
43 50 0.56
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
CGCTATAGAACATGACCTTTAGCGGCCTTTTTCCACAAACGA
Found at i:7248710 original size:150 final size:150
Alignment explanation
Indices: 7248512--7248801 Score: 354
Period size: 150 Copynumber: 1.9 Consensus size: 150
7248502 AAAATGCCGC
* * * **
7248512 TATAGAACATAACCTTTAGTGGCGCTTTTTTCACAAATACCGCTATAGAACATGACCTTTAGCGG
1 TATAGAACATAACCTTTAGTGGCGCTTTTTCCACAAACACCGCTATAGAACAAGACCTTTAGCAA
* * ** * *
7248577 CCCTTTT-CCACAAACGA-CGTTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGC
66 CACTTTTCCCACAAA-AACCGTTATAGAACAAGACCTTTAGCGGC-GCTCTCCCACAAACGGAGC
7248640 TATAGAACATGACCTACGCCAT
129 TATAGAACATGACCTACGCCAT
* * *
7248662 TATAGAACA-AGACCTTTAGTGGCG-TTTTTCCCACAAACGCTGCTATAGAATAAGACCTTTAGC
1 TATAGAACATA-ACCTTTAGTGGCGCTTTTT-CCACAAACACCGCTATAGAACAAGACCTTTAGC
* * * *
7248725 AACACTTTTCCCACAAAAACCGTTGTAGAACATGACCTTTAGCGGCGCTCTCCCACAAATGTAGC
64 AACACTTTTCCCACAAAAACCGTTATAGAACAAGACCTTTAGCGGCGCTCTCCCACAAACGGAGC
7248790 TATAGAACATGA
129 TATAGAACATGA
7248802 TCTTTAGCGG
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
149 6 0.05
150 81 0.69
151 31 0.26
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (150 bp):
TATAGAACATAACCTTTAGTGGCGCTTTTTCCACAAACACCGCTATAGAACAAGACCTTTAGCAA
CACTTTTCCCACAAAAACCGTTATAGAACAAGACCTTTAGCGGCGCTCTCCCACAAACGGAGCTA
TAGAACATGACCTACGCCAT
Found at i:7248719 original size:65 final size:65
Alignment explanation
Indices: 7248596--7248719 Score: 196
Period size: 65 Copynumber: 1.9 Consensus size: 65
7248586 ACAAACGACG
*
7248596 TTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGCTATAGAACATGACCTACGCCA
1 TTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGCTATAGAACAAGACCTACGCCA
* * *
7248661 TTATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAAC-GCTGCTATAGAATAAGACCT
1 TTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGC-GCTATAGAACAAGACCT
7248720 TTAGCAACAC
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 2 0.04
65 52 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (65 bp):
TTATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGCTATAGAACAAGACCTACGCCA
Found at i:7248723 original size:43 final size:43
Alignment explanation
Indices: 7248662--7248933 Score: 264
Period size: 42 Copynumber: 6.4 Consensus size: 43
7248652 CCTACGCCAT
* * *
7248662 TATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAACGCTGC
1 TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* ** * ** *
7248705 TATAGAATAAGACCTTTAGCAACACTTTTCCCACAAAAACCGT
1 TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* * * * **
7248748 TGTAGAACATGACCTTTAGCGGCGC-TCTCCCACAAATGTAGC
1 TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* * * *
7248790 TATAGAACATGATCTTTAGCGGCACTTTTCCCACAAACGCTGC
1 TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* * * *
7248833 TATAGAAC-AGACCTTTAGTGGCGCTTTTCTCAAAAACGCCAC
1 TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* *
7248875 TATAAAAC-AGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGC
1 TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
* *
7248917 TAAAGAACATGA-CTTTA
1 TATAGAACAAGACCTTTA
7248934 AAAAAATATT
Statistics
Matches: 183, Mismatches: 44, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
42 108 0.59
43 75 0.41
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
TATAGAACAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGC
Found at i:7248754 original size:108 final size:107
Alignment explanation
Indices: 7248555--7248762 Score: 265
Period size: 108 Copynumber: 1.9 Consensus size: 107
7248545 CAAATACCGC
* * **
7248555 TATAGAACATGACCTTTAGCGGCCCTTTTCCACAAACGACGTTATAGAACAAGACCTTTAGCGGC
1 TATAGAACAAGACCTTTAGCGGCCCTTTTCCACAAACGACGCTATAGAACAAGACCTTTAGCAAC
* ***
7248620 ATTTTTCCCACAAACGGCGCTATAGAACATGACCTACGCCAT
66 ACTTTTCCCACAAAAACCGCTATAGAACATGACCTACGCCAT
* ** *
7248662 TATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAACG-CTGCTATAGAATAAGACCTTTAGCA
1 TATAGAACAAGACCTTTAGCGGCCCTTTT-CCACAAACGAC-GCTATAGAACAAGACCTTTAGCA
* *
7248726 ACACTTTTCCCACAAAAACCGTTGTAGAACATGACCT
64 ACACTTTTCCCACAAAAACCGCTATAGAACATGACCT
7248763 TTAGCGGCGC
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
107 26 0.31
108 59 0.69
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (107 bp):
TATAGAACAAGACCTTTAGCGGCCCTTTTCCACAAACGACGCTATAGAACAAGACCTTTAGCAAC
ACTTTTCCCACAAAAACCGCTATAGAACATGACCTACGCCAT
Found at i:7248808 original size:85 final size:84
Alignment explanation
Indices: 7248662--7248933 Score: 228
Period size: 85 Copynumber: 3.2 Consensus size: 84
7248652 CCTACGCCAT
* * *
7248662 TATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAACGCTGCTATAGAATAAGACCTTTAGCAA
1 TATAGAAC-AGACCTTTAGTGGCG-CTCTCCCACAAACGCTGCTATAGAACAAGACCTTTAGCAA
*
7248727 CACTTTTCCCACAAAAACCGT
64 CACTTTTCCCACAAAAACCGC
* * * * * **
7248748 TGTAGAACATGACCTTTAGCGGCGCTCTCCCACAAATG-TAGCTATAGAACATGATCTTTAGCGG
1 TATAGAACA-GACCTTTAGTGGCGCTCTCCCACAAACGCT-GCTATAGAACAAGACCTTTAGCAA
** *
7248812 CACTTTTCCCACAAACGCTGC
64 CACTTTTCCCACAAAAACCGC
* * * ** * **
7248833 TATAGAACAGACCTTTAGTGGCGCTTTTCTCAAAAACGCCACTATAAAAC-AGACCTTTAGCGGC
1 TATAGAACAGACCTTTAGTGGCGC-TCTCCCACAAACGCTGCTATAGAACAAGACCTTTAGCAAC
* *
7248897 GCTTTTCCCA-AAAACGCCGC
65 ACTTTTCCCACAAAA-ACCGC
*
7248917 TAAAGAACATGA-CTTTA
1 TATAGAACA-GACCTTTA
7248934 AAAAAATATT
Statistics
Matches: 151, Mismatches: 29, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
83 3 0.02
84 53 0.35
85 75 0.50
86 20 0.13
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (84 bp):
TATAGAACAGACCTTTAGTGGCGCTCTCCCACAAACGCTGCTATAGAACAAGACCTTTAGCAACA
CTTTTCCCACAAAAACCGC
Found at i:7261015 original size:15 final size:15
Alignment explanation
Indices: 7260995--7261044 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
7260985 GTCCTGCTCG
7260995 ACCACGACCATAGCC
1 ACCACGACCATAGCC
*
7261010 ACCACGA-CAT--CG
1 ACCACGACCATAGCC
7261022 ACCACGACCATAGCC
1 ACCACGACCATAGCC
7261037 ACCACGAC
1 ACCACGAC
7261045 ATCGACCACC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 8 0.27
13 3 0.10
14 3 0.10
15 16 0.53
ACGTcount: A:0.34, C:0.46, G:0.14, T:0.06
Consensus pattern (15 bp):
ACCACGACCATAGCC
Found at i:7261022 original size:27 final size:27
Alignment explanation
Indices: 7260992--7261053 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
7260982 CATGTCCTGC
7260992 TCGACCACGACCATAGCCACCACGACA
1 TCGACCACGACCATAGCCACCACGACA
7261019 TCGACCACGACCATAGCCACCACGACA
1 TCGACCACGACCATAGCCACCACGACA
7261046 TCGACCAC
1 TCGACCAC
7261054 CAGGATAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.32, C:0.45, G:0.15, T:0.08
Consensus pattern (27 bp):
TCGACCACGACCATAGCCACCACGACA
Found at i:7261025 original size:12 final size:12
Alignment explanation
Indices: 7261010--7261053 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
7261000 GACCATAGCC
7261010 ACCACGACATCG
1 ACCACGACATCG
*
7261022 ACCACGACCATAGCC
1 ACCACGA-CAT--CG
7261037 ACCACGACATCG
1 ACCACGACATCG
7261049 ACCAC
1 ACCAC
7261054 CAGGATAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 13 0.48
13 3 0.11
14 3 0.11
15 8 0.30
ACGTcount: A:0.34, C:0.45, G:0.14, T:0.07
Consensus pattern (12 bp):
ACCACGACATCG
Found at i:7266726 original size:13 final size:13
Alignment explanation
Indices: 7266708--7266734 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7266698 TCCCAATGCC
7266708 AATTTTTTTTACT
1 AATTTTTTTTACT
7266721 AATTTTTTTTACT
1 AATTTTTTTTACT
7266734 A
1 A
7266735 GTGAGGTGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (13 bp):
AATTTTTTTTACT
Found at i:7266971 original size:98 final size:99
Alignment explanation
Indices: 7266767--7266978 Score: 264
Period size: 98 Copynumber: 2.2 Consensus size: 99
7266757 GCCAAAACCA
* * * *
7266767 AAAAATAAAAATAAAAATTACTGGTCTGGTGCCGACAATTACATGGCCAGAACAAAATTTTTTTT
1 AAAAGTAAAAAAAAAAATTACTAGTCTGGTGCAGACAATTACATGGCCAGAACAAAATTTTTTTT
* * * *
7266832 TAAATTATTGGTTTAGTGCCGGCCATCAATGTAG
66 TAAATAACTGGTCTAGTGCCGGCCATCAATATAG
* * * * * *
7266866 AAAAGTAAAAAAAAAAATTACTAGTGTGGTGCAGGCCATTACATGGCCAGTAC-CATTTTTTTTT
1 AAAAGTAAAAAAAAAAATTACTAGTCTGGTGCAGACAATTACATGGCCAGAACAAAATTTTTTTT
* * *
7266930 TAAATAACTGGTCTGGTGTCGGCCATCAGTATAG
66 TAAATAACTGGTCTAGTGCCGGCCATCAATATAG
7266964 AAAAGTAAAAAAAAA
1 AAAAGTAAAAAAAAA
7266979 TTGCATTGGG
Statistics
Matches: 96, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
98 51 0.53
99 45 0.47
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (99 bp):
AAAAGTAAAAAAAAAAATTACTAGTCTGGTGCAGACAATTACATGGCCAGAACAAAATTTTTTTT
TAAATAACTGGTCTAGTGCCGGCCATCAATATAG
Found at i:7267279 original size:35 final size:35
Alignment explanation
Indices: 7267233--7267302 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
7267223 TTTTTTCTTT
7267233 TTATTCTGTCACGG-TTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTT-GAGTCGTGGGCACGACGC
*
7267268 TTATTCTGTCACGGCTTGAGTTGTGGGCACGACGC
1 TTATTCTGTCACGGCTTGAGTCGTGGGCACGACGC
7267303 GGATCTGACG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 31 0.94
36 2 0.06
ACGTcount: A:0.14, C:0.23, G:0.33, T:0.30
Consensus pattern (35 bp):
TTATTCTGTCACGGCTTGAGTCGTGGGCACGACGC
Found at i:7274765 original size:11 final size:11
Alignment explanation
Indices: 7274749--7274813 Score: 69
Period size: 11 Copynumber: 5.9 Consensus size: 11
7274739 AATGTTCAAA
7274749 AAAAAAAAGAC
1 AAAAAAAAGAC
*
7274760 AAAAAAAACAC
1 AAAAAAAAGAC
7274771 AAAAAAAAGA-
1 AAAAAAAAGAC
* **
7274781 AAAAATAATTC
1 AAAAAAAAGAC
*
7274792 GAAAAAAAAGAA
1 -AAAAAAAAGAC
7274804 AAAAAAAAGA
1 AAAAAAAAGA
7274814 AAAGTTAAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
10 7 0.16
11 29 0.67
12 7 0.16
ACGTcount: A:0.82, C:0.06, G:0.08, T:0.05
Consensus pattern (11 bp):
AAAAAAAAGAC
Found at i:7274776 original size:22 final size:22
Alignment explanation
Indices: 7274749--7274810 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
7274739 AATGTTCAAA
7274749 AAAAAAAAGACAAAAAAAACAC-
1 AAAAAAAAGA-AAAAAAAACACG
* **
7274771 AAAAAAAAGAAAAAATAATTCG
1 AAAAAAAAGAAAAAAAAACACG
7274793 AAAAAAAAGAAAAAAAAA
1 AAAAAAAAGAAAAAAAAA
7274811 AGAAAAGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.23
22 27 0.77
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.05
Consensus pattern (22 bp):
AAAAAAAAGAAAAAAAAACACG
Found at i:7275600 original size:35 final size:35
Alignment explanation
Indices: 7275554--7275624 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
7275544 TTTTTTCTTT
*
7275554 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
7275589 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
7275624 T
1 T
7275625 GGGCACGACG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.28
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:7283215 original size:11 final size:11
Alignment explanation
Indices: 7283201--7283249 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
7283191 AGATAAATAT
7283201 TATTTTATTAA
1 TATTTTATTAA
*
7283212 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
7283225 TATTTTATTAT
1 TATTTTATTAA
7283236 TATTTTATTAA
1 TATTTTATTAA
7283247 TAT
1 TAT
7283250 ATAAAGAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 19 0.59
12 6 0.19
13 7 0.22
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7283228 original size:24 final size:24
Alignment explanation
Indices: 7283201--7283251 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7283191 AGATAAATAT
7283201 TATTTTATTAATATTTTAATAAGA
1 TATTTTATTAATATTTTAATAAGA
* * *
7283225 TATTTTATTATTATTTTATTAATA
1 TATTTTATTAATATTTTAATAAGA
7283249 TAT
1 TAT
7283252 AAAGAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTTTATTAATATTTTAATAAGA
Found at i:7285099 original size:46 final size:46
Alignment explanation
Indices: 7285047--7285366 Score: 410
Period size: 46 Copynumber: 7.0 Consensus size: 46
7285037 GCTCTCTGAA
** * *
7285047 ATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
7285093 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7285139 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
7285185 GGGAAATGAATAAGACCATGGTTGAAAGATACCATAGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7285231 ATGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7285277 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* ** * * *
7285323 A-GAAAATGAGTAAGACCACAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
7285367 TTAAAGATAA
Statistics
Matches: 241, Mismatches: 30, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.00
46 239 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7285297 original size:138 final size:138
Alignment explanation
Indices: 7285057--7285351 Score: 455
Period size: 138 Copynumber: 2.1 Consensus size: 138
7285047 ATGAAATGTG
* * **
7285057 TAAGACCATGGTTGAAAGATACCACGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
* * *
7285122 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGACGG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
*
7285187 GAAATGAA
131 AAAATGAA
* * *
7285195 TAAGACCATGGTTGAAAGATACCATAGCAGCGTGACATGAAATAAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
*
7285260 TACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
*
7285325 AAAATGAG
131 AAAATGAA
**
7285333 TAAGACCACAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
7285352 CACTATGGCA
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 142 1.00
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
AAAATGAA
Found at i:7291350 original size:18 final size:20
Alignment explanation
Indices: 7291322--7291358 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7291312 GTAATTTTTT
7291322 AAATCAAATATT-AATATTG
1 AAATCAAATATTAAATATTG
7291341 AAAT-AAATATTAAATATT
1 AAATCAAATATTAAATATT
7291359 AATATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (20 bp):
AAATCAAATATTAAATATTG
Found at i:7292408 original size:21 final size:21
Alignment explanation
Indices: 7292384--7292429 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7292374 AAGTCTTTAA
7292384 ACTTGAACAGAAAATCTCAAG
1 ACTTGAACAGAAAATCTCAAG
* * * *
7292405 ACTTGGAGAGAAAGTCTCAAT
1 ACTTGAACAGAAAATCTCAAG
7292426 ACTT
1 ACTT
7292430 AGCTCCTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (21 bp):
ACTTGAACAGAAAATCTCAAG
Found at i:7293646 original size:21 final size:22
Alignment explanation
Indices: 7293622--7293663 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7293612 CATTATCTAT
7293622 ATAAATGAATTA-TAAAATATG
1 ATAAATGAATTATTAAAATATG
*
7293643 ATAATTGAATTATTAAAATAT
1 ATAAATGAATTATTAAAATAT
7293664 TAAACATTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (22 bp):
ATAAATGAATTATTAAAATATG
Found at i:7294479 original size:20 final size:19
Alignment explanation
Indices: 7294449--7294486 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7294439 TAATATTTTT
*
7294449 TAATAATAATAATTATATC
1 TAATAATAATAAATATATC
7294468 TAATATATAATAAATATAT
1 TAATA-ATAATAAATATAT
7294487 TTAAACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATAATAATAAATATATC
Found at i:7301838 original size:18 final size:18
Alignment explanation
Indices: 7301800--7301838 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7301790 TTTATTTTAA
*
7301800 TATTATATTAAAAACTTT
1 TATTATATTAAAAACTGT
7301818 TATTATTATTAAAAA-TGT
1 TATTA-TATTAAAAACTGT
7301836 TAT
1 TAT
7301839 GTGTCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TATTATATTAAAAACTGT
Found at i:7307898 original size:22 final size:22
Alignment explanation
Indices: 7307873--7307915 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
7307863 GCTCTTAACG
*
7307873 TTTTATTTTTGTT-AATTTGAT
1 TTTTTTTTTTGTTAAATTTGAT
7307894 TTTTTTTTTTGTTAAATTTGAT
1 TTTTTTTTTTGTTAAATTTGAT
7307916 CATTAACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (22 bp):
TTTTTTTTTTGTTAAATTTGAT
Found at i:7308921 original size:3 final size:3
Alignment explanation
Indices: 7308913--7308960 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
7308903 CAAAAATGAC
7308913 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7308961 GTTAACAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7317083 original size:9 final size:9
Alignment explanation
Indices: 7317061--7317133 Score: 55
Period size: 9 Copynumber: 8.1 Consensus size: 9
7317051 TGTCATGTTA
*
7317061 ATAAATATT
1 ATAAAAATT
*
7317070 TTAAAAATT
1 ATAAAAATT
7317079 ATAAAAA-T
1 ATAAAAATT
*
7317087 ATTCAAAA-T
1 A-TAAAAATT
7317096 ATAAAAA-T
1 ATAAAAATT
7317104 ATAAAAAGTT
1 ATAAAAA-TT
7317114 AATAAAAATT
1 -ATAAAAATT
7317124 -TAATAAATT
1 ATAA-AAATT
7317133 A
1 A
7317134 GCATGAAGTA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
8 18 0.34
9 25 0.47
10 3 0.06
11 7 0.13
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:7317109 original size:7 final size:8
Alignment explanation
Indices: 7317071--7317110 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
7317061 ATAAATATTT
7317071 TAAAAATTA
1 TAAAAA-TA
7317080 TAAAAATA
1 TAAAAATA
*
7317088 TTCAAAATA
1 -TAAAAATA
7317097 TAAAAATA
1 TAAAAATA
7317105 TAAAAA
1 TAAAAA
7317111 GTTAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 15 0.54
9 13 0.46
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAAAATA
Found at i:7322536 original size:26 final size:24
Alignment explanation
Indices: 7322466--7322536 Score: 70
Period size: 26 Copynumber: 2.8 Consensus size: 24
7322456 AAATATACTT
7322466 TATATATTTTGTTAATTTATATATA
1 TATATATTTT-TTAATTTATATATA
* * *
7322491 TATATATATATTTTAGTTTATGTCTA
1 TATATAT-T-TTTTAATTTATATATA
7322517 TATATATCTTTTTATATTTA
1 TATATAT-TTTTTA-ATTTA
7322537 ATTGTATTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
25 12 0.32
26 24 0.63
27 2 0.05
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (24 bp):
TATATATTTTTTAATTTATATATA
Found at i:7340949 original size:17 final size:17
Alignment explanation
Indices: 7340927--7340960 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7340917 TTATTTTTAA
*
7340927 TTAAAAATTTTATAATT
1 TTAAAAATGTTATAATT
7340944 TTAAAAATGTTATAATT
1 TTAAAAATGTTATAATT
7340961 ATTGTTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTAAAAATGTTATAATT
Found at i:7342924 original size:51 final size:50
Alignment explanation
Indices: 7342862--7343021 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
7342852 CTGATCACAT
7342862 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
7342913 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
7342963 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
7343014 TTGTCACT
1 TTATCACT
7343022 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:7350718 original size:51 final size:50
Alignment explanation
Indices: 7350647--7350806 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
7350637 CTGATCACAT
7350647 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
7350698 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
7350748 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
7350799 TTGTCACT
1 TTATCACT
7350807 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:7356728 original size:59 final size:58
Alignment explanation
Indices: 7356630--7356754 Score: 133
Period size: 59 Copynumber: 2.1 Consensus size: 58
7356620 CCAGAACTTT
* ** * * * * *
7356630 TTTTTTTTGTCCAAGTTAGGCTTTGAACTTGGTATTTGTTATCACATTGAGACTTGAAC
1 TTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTG-GACCTAAAC
* * * *
7356689 TTTTTTTTATCCAAGTTAGGCCCTGAATTTTGCAATTGTTCCCACATTGGGCCTAAAC
1 TTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTGGACCTAAAC
7356747 TTTTTTTT
1 TTTTTTTT
7356755 CCCAAGATAG
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
58 14 0.26
59 40 0.74
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (58 bp):
TTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTGGACCTAAAC
Found at i:7365636 original size:19 final size:18
Alignment explanation
Indices: 7365601--7365645 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
7365591 AGCGAAAAGC
7365601 AGGGAAAAAAAGAAAGAA
1 AGGGAAAAAAAGAAAGAA
7365619 AGGAGAAAAGAAAG-AAGAA
1 AGG-GAAAA-AAAGAAAGAA
7365638 AGGGAAAA
1 AGGGAAAA
7365646 TTGAAAGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 13 0.52
20 4 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AGGGAAAAAAAGAAAGAA
Found at i:7367021 original size:20 final size:21
Alignment explanation
Indices: 7366998--7367046 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7366988 AATTATATTG
*
7366998 AATTGAAAAAAAATAT-AATT
1 AATTGAAAAAAAATATGAACT
**
7367018 AATT-AATTAAAATATGAACT
1 AATTGAAAAAAAATATGAACT
7367038 AATTGAAAA
1 AATTGAAAA
7367047 CTGAAAAGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
19 9 0.41
20 11 0.50
21 2 0.09
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (21 bp):
AATTGAAAAAAAATATGAACT
Found at i:7367690 original size:36 final size:36
Alignment explanation
Indices: 7367400--7367695 Score: 181
Period size: 36 Copynumber: 8.0 Consensus size: 36
7367390 AAAGGTATAA
* * * *
7367400 AATAACTGATTATTACTGAATAATTTACTGTTACCG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * * * *
7367436 GATAATTGACTGTTACTGGAT-ATTAGACTGTTA-TG
1 AATAACTGATTGTTACTGAATAATT-GATTGTTACTG
* * **
7367471 AAATAACTGAATATTACTGAATAATTGATCATTACTG
1 -AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * *
7367508 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGATTGTTACTGAAT-AATTGATTGTTACTG
*
7367544 AATAACTTAATTGTTACTGAAT-ATCTGATT-TTACTG
1 AATAAC-TGATTGTTACTGAATAAT-TGATTGTTACTG
* * * *
7367580 AATAATTGACTGTTACTGGATAACCAATTAATTGATCGATACTG
1 AATAACTGATTGTTACT-G------AA-TAATTGATTGTTACTG
* * * *
7367624 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * *
7367660 AATAACTGACTGTTACTGAATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
7367695 A
1 A
7367696 GAGTTAATGA
Statistics
Matches: 196, Mismatches: 46, Indels: 37
0.70 0.16 0.13
Matches are distributed among these distances:
35 17 0.09
36 126 0.64
37 26 0.13
42 2 0.01
43 6 0.03
44 19 0.10
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (36 bp):
AATAACTGATTGTTACTGAATAATTGATTGTTACTG
Found at i:7367691 original size:18 final size:18
Alignment explanation
Indices: 7367400--7367695 Score: 152
Period size: 18 Copynumber: 16.1 Consensus size: 18
7367390 AAAGGTATAA
*
7367400 AATAACTGATTATTACTG
1 AATAACTGATTGTTACTG
* * * *
7367418 AATAATTTACTGTTACCG
1 AATAACTGATTGTTACTG
* * *
7367436 GATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* * *
7367454 GAT-ATTAGACTGTTA-TG
1 AATAACT-GATTGTTACTG
* *
7367471 AAATAACTGAATATTACTG
1 -AATAACTGATTGTTACTG
* **
7367490 AATAATTGATCATTACTG
1 AATAACTGATTGTTACTG
*
7367508 AATAACTGATTGTCACTG
1 AATAACTGATTGTTACTG
* *
7367526 AATGAA-TGACTGCTACTG
1 AAT-AACTGATTGTTACTG
*
7367544 AATAACTTAATTGTTACTG
1 AATAAC-TGATTGTTACTG
*
7367563 AATATCTGATT-TTACTG
1 AATAACTGATTGTTACTG
* *
7367580 AATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
7367598 GATAACCAATTAATTGATCGATACTG
1 AATAA-C---TGATTG-T---TACTG
* * *
7367624 AATAACTGGTTATTATTG
1 AATAACTGATTGTTACTG
* *
7367642 AATAATTGATTGTTACCG
1 AATAACTGATTGTTACTG
*
7367660 AATAACTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
7367678 AATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTG
7367695 A
1 A
7367696 GAGTTAATGA
Statistics
Matches: 212, Mismatches: 50, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
17 25 0.12
18 148 0.70
19 20 0.09
21 1 0.00
22 7 0.03
23 1 0.00
25 1 0.00
26 9 0.04
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
AATAACTGATTGTTACTG
Found at i:7368608 original size:16 final size:17
Alignment explanation
Indices: 7368587--7368621 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7368577 AATTAATTTA
*
7368587 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
7368603 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
7368620 AA
1 AA
7368622 CACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:7377159 original size:24 final size:24
Alignment explanation
Indices: 7377128--7377200 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7377118 CTGAAAAGTT
7377128 GAACAGTAAGCTCATACGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
* *
7377152 GAACAGTAAGCTCTTATGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
* *
7377176 TATATCGGTAAGCTCATACGAGCTG
1 GA-A-CAGTAAGCTCATACGAGCTG
7377201 TGGTGAATCC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 23 0.56
25 1 0.02
26 17 0.41
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (24 bp):
GAACAGTAAGCTCATACGAGCTGA
Found at i:7384993 original size:26 final size:26
Alignment explanation
Indices: 7384929--7385004 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
7384919 CCTTTTATAC
*
7384929 TTAATAAATAATAATAAAATATCTTA
1 TTAATTAATAATAATAAAATATCTTA
* * *
7384955 TTAAAATATTAATAAAAAAATAT-TTA
1 TT-AATTAATAATAATAAAATATCTTA
*
7384981 TCTAATTAATAATTATAAAATATC
1 T-TAATTAATAATAATAAAATATC
7385005 ATCAACATCA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
26 22 0.56
27 17 0.44
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (26 bp):
TTAATTAATAATAATAAAATATCTTA
Found at i:7390211 original size:21 final size:20
Alignment explanation
Indices: 7390177--7390215 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7390167 TTTTAAACAT
*
7390177 AAATTTTAAAATTATAAAAA
1 AAATTTAAAAATTATAAAAA
7390197 AAATTTAAAACATTATAAA
1 AAATTTAAAA-ATTATAAA
7390216 TATTATTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATTTAAAAATTATAAAAA
Found at i:7391069 original size:96 final size:96
Alignment explanation
Indices: 7390905--7391093 Score: 360
Period size: 96 Copynumber: 2.0 Consensus size: 96
7390895 ACTAGTCTAT
*
7390905 ACATATGATATATTCTCTAGTATATACCACTAAGATTGACTATACAAATAAGCAAATTTCATACT
1 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
7390970 CTTTAAGCCTTGTCAGCAATGATATGATAAC
66 CTTTAAGCCTTGTCAGCAATGATATGATAAC
7391001 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
1 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
*
7391066 CTTTAAGCCTTGTTAGCAATGATATGAT
66 CTTTAAGCCTTGTCAGCAATGATATGAT
7391094 TTTAAAAAGG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (96 bp):
ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
CTTTAAGCCTTGTCAGCAATGATATGATAAC
Found at i:7394364 original size:64 final size:64
Alignment explanation
Indices: 7394284--7394411 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
7394274 CTGTTAGAAG
* * *
7394284 TTAGAACAAAGGATGTCCTACATTAATTATTTGCAATCTGGATATATCCTTAACCAGAGATGGC
1 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
* * *
7394348 TTAGAACAAAGCATGTCCTAGATTAATTATTTGCAATCCGGATATATCCTCAACTAGATATGGC
1 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
7394412 CAATTCATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 58 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (64 bp):
TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
Found at i:7395660 original size:17 final size:17
Alignment explanation
Indices: 7395640--7395672 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7395630 ATTAAGAATG
7395640 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
7395657 TTATTAAATTATATTT
1 TTATTAAATTATATTT
7395673 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:7395676 original size:55 final size:56
Alignment explanation
Indices: 7395617--7395750 Score: 168
Period size: 58 Copynumber: 2.4 Consensus size: 56
7395607 TTAATTCATA
* *
7395617 TAATAATAATTATATTAAGAATGTTATTAAATTA-TA-T-TTTTTATTAAATTATATT
1 TAATAATAATTATATTAA-AATATGATTAAATTATTATTATTTTTATTAAATTAT-TT
*
7395672 TAATAATAATTATGTTAAAATATGATTAAATTATTTATTATTTTTATTAAATTATTT
1 TAATAATAATTATATTAAAATATGATTAAATTA-TTATTATTTTTATTAAATTATTT
7395729 TCAATAATAATCT-TATTAAAAT
1 T-AATAATAAT-TATATTAAAAT
7395751 TTAATAACAA
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
54 13 0.19
55 17 0.25
56 2 0.03
57 4 0.06
58 32 0.46
59 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (56 bp):
TAATAATAATTATATTAAAATATGATTAAATTATTATTATTTTTATTAAATTATTT
Found at i:7395953 original size:32 final size:33
Alignment explanation
Indices: 7395916--7395986 Score: 119
Period size: 32 Copynumber: 2.2 Consensus size: 33
7395906 TTGAATTACT
*
7395916 AATTACAACTCTATTCAATTACAGCTCTA-TTC
1 AATTACAACTCTATTCAATTACAGCCCTATTTC
7395948 AATTACAACTCTATTCAATTACAGCCCTATTTC
1 AATTACAACTCTATTCAATTACAGCCCTATTTC
7395981 -ATTACA
1 AATTACA
7395987 GTGAACCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
32 34 0.92
33 3 0.08
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (33 bp):
AATTACAACTCTATTCAATTACAGCCCTATTTC
Found at i:7395977 original size:16 final size:16
Alignment explanation
Indices: 7395916--7395987 Score: 101
Period size: 16 Copynumber: 4.5 Consensus size: 16
7395906 TTGAATTACT
*
7395916 AATTACAACTCTATTC
1 AATTACAGCTCTATTC
7395932 AATTACAGCTCTATTC
1 AATTACAGCTCTATTC
*
7395948 AATTACAACTCTATTC
1 AATTACAGCTCTATTC
*
7395964 AATTACAGCCCTATTTC
1 AATTACAGCTCTA-TTC
7395981 -ATTACAG
1 AATTACAG
7395988 TGAACCAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 48 0.94
17 3 0.06
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (16 bp):
AATTACAGCTCTATTC
Found at i:7398784 original size:48 final size:49
Alignment explanation
Indices: 7398656--7398802 Score: 224
Period size: 49 Copynumber: 3.0 Consensus size: 49
7398646 GTTTGTGTAT
*
7398656 TCATAACAATTTGGTACCAAAGCCAATCGCAATAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
*
7398705 TCATAACAATTTGGTACCAAAGCCCATCACAATAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
* * * * *
7398754 TCAT-ACAATTTCGTACCAAAGCCTACCACAACAGGCAACGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
7398802 T
1 T
7398803 GTTGTTACAA
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 40 0.44
49 51 0.56
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (49 bp):
TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
Found at i:7401560 original size:21 final size:22
Alignment explanation
Indices: 7401534--7401575 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7401524 ATATGGTTCT
7401534 TTTCTTT-TTTTTTTCTTTTTC
1 TTTCTTTCTTTTTTTCTTTTTC
*
7401555 TTTCTTTCTTTTTTTTTTTTT
1 TTTCTTTCTTTTTTTCTTTTT
7401576 TTAAGTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (22 bp):
TTTCTTTCTTTTTTTCTTTTTC
Found at i:7406045 original size:13 final size:13
Alignment explanation
Indices: 7406027--7406051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7406017 TTGGCGCCTA
7406027 ATATATATATAAT
1 ATATATATATAAT
7406040 ATATATATATAA
1 ATATATATATAA
7406052 AGAAACCCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATATATAAT
Found at i:7421292 original size:16 final size:17
Alignment explanation
Indices: 7421258--7421298 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
7421248 CTTGACATAT
7421258 TTTACAAATTTTAATTAA
1 TTTA-AAATTTTAATTAA
7421276 -TTAAAATATTTAA-TAA
1 TTTAAAAT-TTTAATTAA
7421292 TTTAAAA
1 TTTAAAA
7421299 AAAACAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTAAAATTTTAATTAA
Found at i:7423170 original size:17 final size:18
Alignment explanation
Indices: 7423135--7423176 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7423125 AAATTCATTT
*
7423135 TATTAAAATCATTTCAAC
1 TATTAAAATCATTTAAAC
7423153 T-TTAAAAT-ATTGTAAAC
1 TATTAAAATCATT-TAAAC
7423170 TATTAAA
1 TATTAAA
7423177 TAAAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 12 0.57
18 6 0.29
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (18 bp):
TATTAAAATCATTTAAAC
Found at i:7423215 original size:28 final size:28
Alignment explanation
Indices: 7423181--7423238 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
7423171 ATTAAATAAA
*
7423181 ATTATTTTCCAATTATTTAAATATTATC
1 ATTATTTTCAAATTATTTAAATATTATC
*
7423209 ATTATTTTTAAATTATTTAAATATTATC
1 ATTATTTTCAAATTATTTAAATATTATC
7423237 AT
1 AT
7423239 AATTATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (28 bp):
ATTATTTTCAAATTATTTAAATATTATC
Found at i:7423254 original size:28 final size:28
Alignment explanation
Indices: 7423195--7423255 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
7423185 TTTTCCAATT
* * *
7423195 ATTTAAATATTATCATTATTTTTAAATT
1 ATTTAAATATTATCATAATTATTAAATA
*
7423223 ATTTAAATATTATCATAATTATTGAATA
1 ATTTAAATATTATCATAATTATTAAATA
7423251 ATTTA
1 ATTTA
7423256 CTTAATTACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (28 bp):
ATTTAAATATTATCATAATTATTAAATA
Found at i:7424439 original size:18 final size:18
Alignment explanation
Indices: 7424408--7424442 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7424398 TTGTTGGCCA
7424408 TATGAACAAATGCAATGG
1 TATGAACAAATGCAATGG
* *
7424426 TATGACCAATTGCAATG
1 TATGAACAAATGCAATG
7424443 TGTAAGGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (18 bp):
TATGAACAAATGCAATGG
Found at i:7439457 original size:16 final size:16
Alignment explanation
Indices: 7439433--7439486 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
7439423 TTTGGTTCGC
* *
7439433 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
7439449 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
7439465 TGTAATGGAATAGAGA
1 TGTAATGGAATAGAGG
7439481 TGTAAT
1 TGTAAT
7439487 AGCAAATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:7439531 original size:45 final size:44
Alignment explanation
Indices: 7439465--7439555 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
7439455 GGAATAGAGG
*
7439465 TGTAATGGAATAGAGATGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGACGTAATAG-AAATCAACTGTTTGGTTGAA
* * ***
7439510 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGACGTAATAGAAATCAACTGTTTGGTTGAA
7439554 TG
1 TG
7439556 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 18 0.45
45 22 0.55
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGACGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:7439723 original size:24 final size:24
Alignment explanation
Indices: 7439685--7439750 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 24
7439675 TTAATAATAA
*
7439685 ATAATTTAATCATATTTAAACATAATT
1 ATAATTAAAT-ATA-TTAAACAT-ATT
* *
7439712 ATTATTAAATATATTAAATATATT
1 ATAATTAAATATATTAAACATATT
7439736 ATAATTAAAATATAT
1 ATAATT-AAATATAT
7439751 AATTTAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 8 0.24
25 15 0.44
26 3 0.09
27 8 0.24
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
ATAATTAAATATATTAAACATATT
Found at i:7439954 original size:26 final size:28
Alignment explanation
Indices: 7439925--7439985 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
7439915 TATGAATTTG
*
7439925 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
7439951 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
7439979 TAAAATT
1 TATAATT
7439986 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:7439987 original size:91 final size:89
Alignment explanation
Indices: 7439891--7440107 Score: 299
Period size: 91 Copynumber: 2.4 Consensus size: 89
7439881 AATTTAAAAT
* * * *
7439891 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
7439956 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* *
7439982 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAA-ATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
7440047 TTTAATAATGATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
*
7440073 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
7440108 CTAAAATCAA
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
91 89 0.80
92 22 0.20
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:7439988 original size:44 final size:42
Alignment explanation
Indices: 7439925--7440067 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 42
7439915 TATGAATTTG
7439925 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAAT-ATA
* ** *
7439969 TATAATTTCATAA-AATTATTGA-TAATAATTTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAAT-A-TAAT-TTA-AT-AATATA
* *
7440016 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAAT-ATA
7440060 TATAATTT
1 TATAATTT
7440068 CATAAAATTC
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
43 5 0.06
44 29 0.38
45 9 0.12
46 9 0.12
47 19 0.25
48 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (42 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATATA
Found at i:7440082 original size:47 final size:47
Alignment explanation
Indices: 7439932--7440088 Score: 128
Period size: 47 Copynumber: 3.4 Consensus size: 47
7439922 TTGTATAATT
* * * * *
7439932 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* ** * *
7439979 TAAAATTATTGATAAT-AAT-T--TTTCTTATATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATTTAATA-ATG-ATATATA-ATTTCA
* *
7440023 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
7440070 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
7440089 ATGTTCTTAT
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
43 5 0.06
44 15 0.19
45 13 0.16
46 12 0.15
47 31 0.38
48 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:7443042 original size:14 final size:14
Alignment explanation
Indices: 7443001--7443033 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7442991 ACTTTTTGAT
7443001 TAATGGAAACATAA
1 TAATGGAAACATAA
*
7443015 TAATGGAGACATAA
1 TAATGGAAACATAA
7443029 TAATG
1 TAATG
7443034 TAAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (14 bp):
TAATGGAAACATAA
Found at i:7449843 original size:2 final size:2
Alignment explanation
Indices: 7449836--7449864 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7449826 TATCCCTATA
7449836 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7449865 AAGCACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7452745 original size:3 final size:3
Alignment explanation
Indices: 7452737--7452772 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
7452727 GTGCAATTTC
*
7452737 AAT AAT AAT AAT AAT AAT AAT AAT AAT CAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7452773 TTATTATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7455283 original size:9 final size:9
Alignment explanation
Indices: 7455257--7455305 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
7455247 ATATTTTGTG
*
7455257 ATGATAATC
1 ATGATCATC
* *
7455266 ATCACCATC
1 ATGATCATC
7455275 ATGATCATC
1 ATGATCATC
*
7455284 ATGATCACC
1 ATGATCATC
*
7455293 ATGATCATG
1 ATGATCATC
7455302 ATGA
1 ATGA
7455306 AGGTGGTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (9 bp):
ATGATCATC
Found at i:7467660 original size:20 final size:19
Alignment explanation
Indices: 7467617--7467707 Score: 87
Period size: 19 Copynumber: 4.8 Consensus size: 19
7467607 TAAGTTTTAA
* *
7467617 TAAAAATATTTAAAATTTAG
1 TAAAAAAATATAAAATTT-G
7467637 -AAAAAAATATAAAATTTG
1 TAAAAAAATATAAAATTTG
*
7467655 TAAAAAAATTATAAAA-ATG
1 TAAAAAAA-TATAAAATTTG
* **
7467674 TAAAGAAATATAAAATTCA
1 TAAAAAAATATAAAATTTG
*
7467693 TTAAAAAATATAAAA
1 TAAAAAAATATAAAA
7467708 ATTATCGTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
18 8 0.14
19 44 0.75
20 7 0.12
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (19 bp):
TAAAAAAATATAAAATTTG
Found at i:7467926 original size:28 final size:28
Alignment explanation
Indices: 7467895--7467961 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
7467885 TATTTTCTAA
*
7467895 TTATAAATTATAAATATTTTTTAT-ATTT
1 TTATAAATT-TAAATAATTTTTATAATTT
*
7467923 TTATTAAAATTAAATAATTTTTATAATTT
1 TTA-TAAATTTAAATAATTTTTATAATTT
*
7467952 TTATTAATTT
1 TTATAAATTT
7467962 TTTTTATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TTATAAATTTAAATAATTTTTATAATTT
Found at i:7467971 original size:12 final size:12
Alignment explanation
Indices: 7467940--7467976 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
7467930 AATTAAATAA
7467940 TTTTTATAA-TT
1 TTTTTATAATTT
*
7467951 TTTAT-TAATTT
1 TTTTTATAATTT
7467962 TTTTTATAATTT
1 TTTTTATAATTT
7467974 TTT
1 TTT
7467977 GCCACATGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
10 3 0.14
11 10 0.45
12 9 0.41
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:7468269 original size:91 final size:91
Alignment explanation
Indices: 7468106--7468306 Score: 230
Period size: 91 Copynumber: 2.2 Consensus size: 91
7468096 AATTGCTTTT
* * * *
7468106 TTTTTTTGAAAAAGTTTGA-GGTCTTTTTAATGCATTTTAAAAGTTTAAGTACCAAATTGAGTGC
1 TTTTTTTGAAAAAGTTTAAGGGTCTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTGC
* *
7468170 AAACAAAAA-GTAGGG-GCTTAATTGC
66 AAAAAAAAAGGTAGGGAG-TTAATTAC
* * *
7468195 TTTTTTTGAAAAAGTTTAAGGGTATTTTTTGATGCATTGTGAAAGTTGAAGTACC-AAGTGAGTG
1 TTTTTTTGAAAAAGTTTAAGGGT-CTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTG
*
7468259 CAAAAAAAAAAGGTTGGGAGTTAATTAC
65 C-AAAAAAAAAGGTAGGGAGTTAATTAC
* **
7468287 TTTATTAAAAAAAGTTTAAG
1 TTTTTTTGAAAAAGTTTAAG
7468307 AACTTTTTAC
Statistics
Matches: 94, Mismatches: 13, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
89 18 0.19
90 12 0.13
91 34 0.36
92 29 0.31
93 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.36
Consensus pattern (91 bp):
TTTTTTTGAAAAAGTTTAAGGGTCTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTGC
AAAAAAAAAGGTAGGGAGTTAATTAC
Found at i:7485924 original size:22 final size:23
Alignment explanation
Indices: 7485899--7485944 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7485889 CAACCAAATC
7485899 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
7485921 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
7485944 A
1 A
7485945 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:7485950 original size:23 final size:23
Alignment explanation
Indices: 7485906--7485950 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7485896 ATCAATTCAA
*
7485906 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
7485929 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
7485951 CACATTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:7489254 original size:7 final size:7
Alignment explanation
Indices: 7489236--7489265 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7489226 AGCTGAAATG
7489236 AAGCCTTT
1 AAGCC-TT
7489244 AAGCCTT
1 AAGCCTT
7489251 AAGCCTT
1 AAGCCTT
7489258 AAGCCTT
1 AAGCCTT
7489265 A
1 A
7489266 TTGCTTAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (7 bp):
AAGCCTT
Found at i:7496270 original size:21 final size:21
Alignment explanation
Indices: 7496223--7496279 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
7496213 TTAAGTTTGG
*
7496223 TTTATTTCAAT-TGAGTTTTTCT
1 TTTATTTCAATAT--GTGTTTCT
*
7496245 ATTATTTCAATATGTGTTTCT
1 TTTATTTCAATATGTGTTTCT
7496266 TTTATTTCAATATG
1 TTTATTTCAATATG
7496280 ATCAATTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.65
22 10 0.32
23 1 0.03
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.60
Consensus pattern (21 bp):
TTTATTTCAATATGTGTTTCT
Found at i:7501119 original size:73 final size:73
Alignment explanation
Indices: 7500994--7501138 Score: 231
Period size: 73 Copynumber: 2.0 Consensus size: 73
7500984 ACAAACCATG
*
7500994 TGGAACTCTTTCAAATGAGTGTGGGAGTTCTCGTTTTTCAAACCGCAGAAAGTAGGCAATAAATG
1 TGGAACTCTTTCAAATGAGTGTGGGAGTTCTCGTTTTTCAAACCACAGAAAGTAGGCAATAAATG
7501059 AATTAATT
66 AATTAATT
* *
7501067 TGGAACTCTTTCAGATGAGTGT-GGAGGTTCTTGTTTTTCAAACCAC-GAAAAGTAGGCAATAAA
1 TGGAACTCTTTCAAATGAGTGTGGGA-GTTCTCGTTTTTCAAACCACAG-AAAGTAGGCAATAAA
7501130 TGAATTAAT
64 TGAATTAAT
7501139 CCTGACATTA
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
72 4 0.06
73 63 0.94
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (73 bp):
TGGAACTCTTTCAAATGAGTGTGGGAGTTCTCGTTTTTCAAACCACAGAAAGTAGGCAATAAATG
AATTAATT
Found at i:7506178 original size:26 final size:26
Alignment explanation
Indices: 7506149--7506201 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7506139 TCAAACATGC
7506149 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
7506175 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
7506201 A
1 A
7506202 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:7507722 original size:26 final size:26
Alignment explanation
Indices: 7507686--7507795 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
7507676 CATGAAATTC
7507686 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7507712 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7507738 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
7507764 TTATCACGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7507790 TTATCA
1 TTATCA
7507796 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7509895 original size:11 final size:11
Alignment explanation
Indices: 7509879--7509921 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
7509869 TAGAATATAC
7509879 CCCATACCTTG
1 CCCATACCTTG
*
7509890 CCCATACCTTT
1 CCCATACCTTG
*
7509901 CCCATACC-TA
1 CCCATACCTTG
7509911 CCCATACCTTG
1 CCCATACCTTG
7509922 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7509916 original size:21 final size:22
Alignment explanation
Indices: 7509879--7509920 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7509869 TAGAATATAC
*
7509879 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
7509901 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
7509921 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:7510490 original size:18 final size:18
Alignment explanation
Indices: 7510457--7510531 Score: 87
Period size: 18 Copynumber: 4.2 Consensus size: 18
7510447 ACCGTTTATG
* *
7510457 GTACTATTAATGTATACA
1 GTACTATTCACGTATACA
* * *
7510475 GCACTATTCACATATACG
1 GTACTATTCACGTATACA
*
7510493 GTACTATTTACGTATACA
1 GTACTATTCACGTATACA
*
7510511 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
7510529 GTA
1 GTA
7510532 GTTGGGATTG
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:7510508 original size:36 final size:36
Alignment explanation
Indices: 7510456--7510527 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
7510446 GACCGTTTAT
*
7510456 GGTACTATTAATGTATACAGCACTATTCACATATAC
1 GGTACTATTAACGTATACAGCACTATTCACATATAC
* * * *
7510492 GGTACTATTTACGTATACAGTACTGTTCACGTATAC
1 GGTACTATTAACGTATACAGCACTATTCACATATAC
7510528 AGTAGTTGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (36 bp):
GGTACTATTAACGTATACAGCACTATTCACATATAC
Found at i:7517250 original size:8 final size:8
Alignment explanation
Indices: 7517237--7517266 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
7517227 AATAATAACG
7517237 ATATATAA
1 ATATATAA
7517245 ATATATAA
1 ATATATAA
7517253 ATATATAA
1 ATATATAA
7517261 ATATAT
1 ATATAT
7517267 GTATTAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATATATAA
Found at i:7518009 original size:23 final size:25
Alignment explanation
Indices: 7517963--7518009 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
7517953 TATAGCAAAA
*
7517963 ATAATAATAATATGTTAATGAATATG
1 ATAATAATAACATGTTAA-GAATATG
7517989 ATAATAATAACA-GTTAA-AATA
1 ATAATAATAACATGTTAAGAATA
7518010 ATGCTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 4 0.20
25 5 0.25
26 11 0.55
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (25 bp):
ATAATAATAACATGTTAAGAATATG
Found at i:7521502 original size:11 final size:11
Alignment explanation
Indices: 7521488--7521562 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 11
7521478 TATATTAAAG
7521488 ATATACATAAT
1 ATATACATAAT
7521499 ATATACATAA-
1 ATATACATAAT
* *
7521509 A-AAATATAAT
1 ATATACATAAT
*
7521519 AT-TAAATATAT
1 ATATACATA-AT
* *
7521530 ATATAAATGAT
1 ATATACATAAT
*
7521541 ATATATGA-AAT
1 ATATA-CATAAT
7521552 ATATACATAAT
1 ATATACATAAT
7521563 GTAGTTATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 6 0.12
10 7 0.14
11 31 0.62
12 6 0.12
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:7521750 original size:14 final size:15
Alignment explanation
Indices: 7521731--7521760 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7521721 TTCGTTATCA
7521731 TTTGCCAT-TTTTAT
1 TTTGCCATATTTTAT
7521745 TTTGCCATATTTTAT
1 TTTGCCATATTTTAT
7521760 T
1 T
7521761 CACTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (15 bp):
TTTGCCATATTTTAT
Found at i:7525658 original size:26 final size:26
Alignment explanation
Indices: 7525607--7525660 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
7525597 AACAAATTGA
*
7525607 AAATACATTAAAAAAATTTTATACTT
1 AAATACATTAAAAAAATTGTATACTT
* *
7525633 AAATAACATTAAGATAATTGTA-ACTT
1 AAAT-ACATTAAAAAAATTGTATACTT
7525659 AA
1 AA
7525661 CAAATAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATACATTAAAAAAATTGTATACTT
Found at i:7525743 original size:11 final size:11
Alignment explanation
Indices: 7525723--7525777 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
7525713 AAAATATCCA
7525723 AATAATAATAAT
1 AATAA-AATAAT
*
7525735 AATAAAATAGT
1 AATAAAATAAT
* *
7525746 AACAATATAAT
1 AATAAAATAAT
*
7525757 AATAAAATGAT
1 AATAAAATAAT
*
7525768 AGTAAAATAA
1 AATAAAATAA
7525778 CAACAGAAAA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
11 29 0.85
12 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.27
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:7525769 original size:25 final size:24
Alignment explanation
Indices: 7525722--7525776 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
7525712 TAAAATATCC
7525722 AAATAATAATAATAATAAAATAGTA
1 AAAT-ATAATAATAATAAAATAGTA
*
7525747 ACAATATAATAATAA-AATGATAGTA
1 A-AATATAATAATAATAA-AATAGTA
7525772 AAATA
1 AAATA
7525777 ACAACAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 6 0.22
25 18 0.67
26 3 0.11
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.27
Consensus pattern (24 bp):
AAATATAATAATAATAAAATAGTA
Found at i:7529940 original size:24 final size:24
Alignment explanation
Indices: 7529908--7529968 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
7529898 ATTTTTGGTG
7529908 TAATTTAGTATTTT-TTTTGACAAA
1 TAATTTAGTATTTTATTTT-ACAAA
7529932 TAATTTAGTATTTATATTTTACAAA
1 TAATTTAGTATTT-TATTTTACAAA
*
7529957 -AGTTTA-TATTTT
1 TAATTTAGTATTTT
7529969 GGTAACCAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
22 1 0.03
23 5 0.15
24 18 0.53
25 6 0.18
26 4 0.12
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.56
Consensus pattern (24 bp):
TAATTTAGTATTTTATTTTACAAA
Found at i:7531864 original size:22 final size:22
Alignment explanation
Indices: 7531802--7531873 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
7531792 AAGTCTTTTT
*
7531802 TAAAAATTATAATTA-TTC-AAA
1 TAAAAA-TATTATTATTTCAAAA
* * *
7531823 T-AAAAT-TTTTTATGTGAAAA
1 TAAAAATATTATTATTTCAAAA
7531843 TAAAAATATTATTATTTCAAAA
1 TAAAAATATTATTATTTCAAAA
7531865 TCAAAAATA
1 T-AAAAATA
7531874 ATAATTATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 4 0.10
19 2 0.05
20 8 0.21
21 6 0.15
22 12 0.31
23 7 0.18
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (22 bp):
TAAAAATATTATTATTTCAAAA
Found at i:7535813 original size:8 final size:8
Alignment explanation
Indices: 7535800--7535827 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7535790 TTAAAGTGAA
7535800 ATTTTATC
1 ATTTTATC
7535808 ATTTTATC
1 ATTTTATC
7535816 ATTTTATC
1 ATTTTATC
7535824 ATTT
1 ATTT
7535828 ATGAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (8 bp):
ATTTTATC
Found at i:7537890 original size:88 final size:83
Alignment explanation
Indices: 7537719--7537890 Score: 186
Period size: 84 Copynumber: 2.0 Consensus size: 83
7537709 CTAAAATCCT
* * *
7537719 TTCAATTCAGTTCTCTTATAAATAGAAAATTTATAAAATAATATATATAGTGAAATTGCATTTCA
1 TTCAATTCAGTTCTCTTATAAATAAAAAAATTATAAAATAATATATATAGTAAAATTGCATTTCA
*
7537784 ACCCCCAAAATGAAAAAAA
66 ACCCCAAAAATG-AAAAAA
* *
7537803 TTCAATTTAGTTCTCTTATAAATAAATAAAGAAATTAT-AAATTA-ATATATAGTAAAATTGCAC
1 TTCAATTCAGTTCTCTTATAAAT--A-AAA-AAATTATAAAATAATATATATAGTAAAATTGCA-
*
7537866 TTTTAACTCCTCTAAAAATGAAAAA
61 TTTCAAC-CC-C-AAAAATGAAAAA
7537891 GAAAAATTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
84 22 0.30
86 18 0.25
87 13 0.18
88 8 0.11
89 6 0.08
90 6 0.08
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (83 bp):
TTCAATTCAGTTCTCTTATAAATAAAAAAATTATAAAATAATATATATAGTAAAATTGCATTTCA
ACCCCAAAAATGAAAAAA
Found at i:7537952 original size:31 final size:30
Alignment explanation
Indices: 7537913--7537993 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 30
7537903 TTAAGTAAAT
*
7537913 AAAT-AAAGTACAAAGGACTAAAGTT-ACC
1 AAATAAAAGTACAAAGGACTAAAATTGACC
* *
7537941 AATTTGAAAAGTAC-AAGAACTAAAATTGACC
1 AA-AT-AAAAGTACAAAGGACTAAAATTGACC
*
7537972 AAATAAAAGTACAGA-GACTAAA
1 AAATAAAAGTACAAAGGACTAAA
7537994 TCCACAGCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
28 2 0.05
29 15 0.36
30 13 0.31
31 12 0.29
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.19
Consensus pattern (30 bp):
AAATAAAAGTACAAAGGACTAAAATTGACC
Found at i:7538970 original size:96 final size:96
Alignment explanation
Indices: 7538765--7539013 Score: 268
Period size: 96 Copynumber: 2.5 Consensus size: 96
7538755 GTTTTTAAAT
* * ** *
7538765 TTTAGGGTTTTAAAGAAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTT-AAGAAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
*
7538830 CTAATTTTAAAAAATTAGATTATGGTTTAGTG
65 CTAATTTAAAAAAATTAGATTATGGTTTAGTG
* * *
7538862 TTTATGGTTTTTAAG-GAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTA-GGGTTTTAAGAAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA
*
7538926 -TAAATTTAAAAAAATTAGATTAGGATTTTAAGGTTTAGGG
65 CT-AATTTAAAAAAATTAGATT---A---T--GGTTTAGTG
*
7538966 TTTTAGGGTATTTAAGAAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 -TTTAGGGT-TTTAAGAAAAAAAATCAAATAAATTAGGGTTTAGGGTT
7539014 TAGGGTAACT
Statistics
Matches: 126, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
95 1 0.01
96 60 0.48
97 7 0.06
98 6 0.05
99 1 0.01
102 1 0.01
104 11 0.09
105 10 0.08
106 29 0.23
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (96 bp):
TTTAGGGTTTTAAGAAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAC
TAATTTAAAAAAATTAGATTATGGTTTAGTG
Found at i:7539531 original size:126 final size:126
Alignment explanation
Indices: 7539057--7539595 Score: 812
Period size: 126 Copynumber: 4.3 Consensus size: 126
7539047 AAAAGCTTCT
* * *
7539057 ACGTGGAGGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
7539122 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * **
7539183 ATGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAAATAATTTTGAGAAGACGTGTCAGTGCA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTG-AAAAAATAATTTTGAGAAGACGTGTCTGCACA
* **
7539248 AATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTTC
65 AATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* *
7539310 ACATGGATGCTCTTTTGCTACAGTAGTCTCTG-AAAAATAATTTTGAGAAGACGTGTCTGCACAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* * *
7539374 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
7539435 ACGTGGATGCTCTTTTGCTATAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
* *
7539500 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTTAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
7539561 ACGTGGACGATCTTTCGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
7539596 TAACTTGGGC
Statistics
Matches: 376, Mismatches: 33, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
125 113 0.30
126 147 0.39
127 116 0.31
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCACAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:7542848 original size:116 final size:116
Alignment explanation
Indices: 7542604--7543216 Score: 1050
Period size: 116 Copynumber: 5.3 Consensus size: 116
7542594 TTATATTTTT
* * *
7542604 TTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAGTAATTTTCATTTTATT-A
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
* * * **
7542668 AAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACATTTTATATTG
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
* *
7542719 TCACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTTCATTTTATTAA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
7542784 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
* *
7542835 TTACATGAAATAATATAAAAATATTTAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
7542900 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
* *
7542951 TTACATAAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
* *
7543016 AAATATAAAGGTAAATTATAATTACTTTATTTAAAACAACCTTTTATCTAA
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
7543067 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAA-TTTCTATTTTATTA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTC-ATTTTATTA
7543131 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
65 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
*
7543183 TTACATGAAATAATATAAAAAGATTCAAAATGTT
1 TTACATGAAATAATATAAAAATATTCAAAATGTT
7543217 TGTACAAATA
Statistics
Matches: 473, Mismatches: 23, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
115 61 0.13
116 412 0.87
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (116 bp):
TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
Found at i:7543738 original size:30 final size:30
Alignment explanation
Indices: 7543697--7543762 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
7543687 GTTGAACTGT
* *
7543697 TGGGCCCGGTGATTGTGTAGGTC-CTGTTGC
1 TGGGCCCGGTGATTGTGT-GGGCGCTGTTGA
*
7543727 TGGGCCGGGTGATTGTGTGGGCGCTGTTGA
1 TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
7543757 TGGGCC
1 TGGGCC
7543763 TGCGTCGTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.06, C:0.18, G:0.45, T:0.30
Consensus pattern (30 bp):
TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
Found at i:7546747 original size:46 final size:46
Alignment explanation
Indices: 7546680--7546970 Score: 402
Period size: 46 Copynumber: 6.5 Consensus size: 46
7546670 TGACAACCTG
7546680 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
7546726 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
7546764 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
7546810 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
7546856 TGTGTAAGACCATGGTTGAAAGATACCATGACAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
7546902 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* *
7546948 TGAGTAAGACCATAGTTGAAAGA
1 TGTGTAAGACCATGGTTGAAAGA
7546971 CACTTTGGCA
Statistics
Matches: 223, Mismatches: 13, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
38 36 0.16
41 2 0.01
43 2 0.01
45 1 0.00
46 182 0.82
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:7546766 original size:84 final size:84
Alignment explanation
Indices: 7546631--7546936 Score: 468
Period size: 84 Copynumber: 3.5 Consensus size: 84
7546621 AGTGTGCTCT
7546631 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
7546696 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
7546715 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
7546780 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
7546799 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACC-----T--G-TGTGTAAG
*
7546864 ACCATGGTTGAAAGATACCATGACAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
7546891 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
7546937 ATGACAGAAA
Statistics
Matches: 205, Mismatches: 9, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
84 129 0.63
89 1 0.00
91 1 0.00
92 74 0.36
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:7547286 original size:23 final size:25
Alignment explanation
Indices: 7547241--7547287 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7547231 AATAAATATA
*
7547241 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
7547266 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
7547288 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:7547893 original size:7 final size:7
Alignment explanation
Indices: 7547883--7547913 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7547873 GTTAAATAAA
7547883 AAATACT
1 AAATACT
7547890 AAATACT
1 AAATACT
7547897 AAATACT
1 AAATACT
7547904 AAATAC-
1 AAATACT
7547910 AAAT
1 AAAT
7547914 CCATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:7547894 original size:14 final size:14
Alignment explanation
Indices: 7547875--7547908 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7547865 AAATATTAGT
7547875 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
7547889 TAAATACTAAATAC
1 TAAATAAAAAATAC
7547903 TAAATA
1 TAAATA
7547909 CAAATCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:7549100 original size:20 final size:22
Alignment explanation
Indices: 7549067--7549113 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
7549057 TAACGAGAGT
7549067 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
*
7549089 TTTGAGA-G-ATTTGAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
7549109 TTTGA
1 TTTGA
7549114 AAGAATATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 16 0.67
21 1 0.04
22 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:7549112 original size:11 final size:11
Alignment explanation
Indices: 7549067--7549118 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
7549057 TAACGAGAGT
*
7549067 TTTGAGAGGAA
1 TTTGAGAGAAA
*
7549078 TTTAAGAGAAA
1 TTTGAGAGAAA
7549089 TTTGAGAG--A
1 TTTGAGAGAAA
7549098 TTTGAGAGAAA
1 TTTGAGAGAAA
*
7549109 TTTGAAAGAA
1 TTTGAGAGAA
7549119 TATTGAAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 9 0.26
11 26 0.74
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:7549130 original size:31 final size:31
Alignment explanation
Indices: 7549067--7549130 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
7549057 TAACGAGAGT
* *
7549067 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
7549098 TTTGAGAGAAATTTGAA-AG-AATATTGAAAGA
1 TTTGAGAGAAATTT-AAGAGAAAT-TTGAAAGA
7549129 TT
1 TT
7549131 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 3 0.10
31 24 0.83
32 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:7555968 original size:6 final size:6
Alignment explanation
Indices: 7555959--7555990 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7555949 CAACTAATTT
*
7555959 TATATT TATATC TATATC TATATC TATATC TA
1 TATATC TATATC TATATC TATATC TATATC TA
7555991 CATATATTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.53
Consensus pattern (6 bp):
TATATC
Found at i:7556372 original size:16 final size:16
Alignment explanation
Indices: 7556348--7556378 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7556338 CCCTTGGTTC
7556348 ATTGGAATGGAATAGG
1 ATTGGAATGGAATAGG
*
7556364 ATTGTAATGGAATAG
1 ATTGGAATGGAATAG
7556379 TCATTATGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (16 bp):
ATTGGAATGGAATAGG
Found at i:7556518 original size:3 final size:3
Alignment explanation
Indices: 7556510--7556538 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7556500 TTCGAATTAT
7556510 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7556539 TTTTTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7556620 original size:22 final size:21
Alignment explanation
Indices: 7556589--7556629 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7556579 AATCTATAAA
* *
7556589 TATAATATTAATATATAAATTG
1 TATAAAATTAAAATA-AAATTG
7556611 TATAAAATTAAAATAAAAT
1 TATAAAATTAAAATAAAAT
7556630 AAAGCAGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
TATAAAATTAAAATAAAATTG
Found at i:7565949 original size:10 final size:11
Alignment explanation
Indices: 7565921--7565950 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7565911 ATTTAAATAC
7565921 AGAAAAATAAA
1 AGAAAAATAAA
7565932 AGAAAAATAAA
1 AGAAAAATAAA
7565943 A-AAAAATA
1 AGAAAAATA
7565951 GATAAATAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (11 bp):
AGAAAAATAAA
Found at i:7565957 original size:18 final size:17
Alignment explanation
Indices: 7565923--7565971 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
7565913 TTAAATACAG
*
7565923 AAAAATAAAAGAAAAAT
1 AAAAAAAAAAGAAAAAT
*
7565940 AAAAAAAAATAGATAAAT
1 AAAAAAAAA-AGAAAAAT
*
7565958 AGCAAAAAAAAGAA
1 A-AAAAAAAAAGAA
7565972 GAAGAAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 8 0.31
18 11 0.42
19 7 0.27
ACGTcount: A:0.80, C:0.02, G:0.08, T:0.10
Consensus pattern (17 bp):
AAAAAAAAAAGAAAAAT
Found at i:7566098 original size:11 final size:11
Alignment explanation
Indices: 7566082--7566116 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7566072 CTCTTCCCCC
7566082 CTCCCTTCTCT
1 CTCCCTTCTCT
7566093 CTCCCTTCTCT
1 CTCCCTTCTCT
7566104 CTTCCC-TCTCT
1 C-TCCCTTCTCT
7566115 CT
1 CT
7566117 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:7567368 original size:9 final size:9
Alignment explanation
Indices: 7567354--7567379 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7567344 TATAGCTTCT
7567354 TATTATTAC
1 TATTATTAC
7567363 TATTATTAC
1 TATTATTAC
7567372 TATTATTA
1 TATTATTA
7567380 TTAGTGTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (9 bp):
TATTATTAC
Done.