Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 220 of 290
Found at i:71667737 original size:27 final size:27
Alignment explanation
Indices: 71667629--71667737 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
71667619 TGGATAAGTT
* *
71667629 GTAGAATTACCGAAATACCCCTATCGG
1 GTAGAAATACCGAAATACCCCTATAGG
* * *
71667656 GTAGAATTTACCGAAATACCCCTGTACG
1 GTAGAA-ATACCGAAATACCCCTATAGG
* * * *
71667684 ATAGAAATACTGAAATACCCTTGTAGG
1 GTAGAAATACCGAAATACCCCTATAGG
*
71667711 GTAGAAATACCAAAATACCCCTATAGG
1 GTAGAAATACCGAAATACCCCTATAGG
71667738 ACATAATTAC
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 45 0.66
28 23 0.34
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (27 bp):
GTAGAAATACCGAAATACCCCTATAGG
Found at i:71676065 original size:18 final size:18
Alignment explanation
Indices: 71676042--71676079 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
71676032 TAGTATTGAT
71676042 TACTAGTGTATAAATGCG
1 TACTAGTGTATAAATGCG
71676060 TACTAGTGTATAAATGCG
1 TACTAGTGTATAAATGCG
71676078 TA
1 TA
71676080 TTAGCCGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (18 bp):
TACTAGTGTATAAATGCG
Found at i:71676764 original size:40 final size:40
Alignment explanation
Indices: 71676674--71676858 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
71676664 TCGAATGATG
* * *
71676674 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
71676714 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71676754 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71676793 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71676834 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71676859 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.27
40 82 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71676810 original size:79 final size:81
Alignment explanation
Indices: 71676675--71676856 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
71676665 CGAATGATGT
*
71676675 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
71676739 GTGCGAGTTACTA-ATT
66 GTGCGAGTTACTATA-A
* * * * **
71676755 TCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
71676817 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
71676834 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
71676857 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 10, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.67
80 28 0.32
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:71676881 original size:79 final size:79
Alignment explanation
Indices: 71676727--71676881 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
71676717 GGACTAAGAT
** **
71676727 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
71676792 ATCCGGGTTAAGTC
66 ATCCGAGTTAAGTC
* *
71676806 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
71676869 TATATCC-AGTTAA
63 TAAATCCGAGTTAA
71676882 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAGTC
Found at i:71681135 original size:47 final size:47
Alignment explanation
Indices: 71681081--71681396 Score: 442
Period size: 47 Copynumber: 6.7 Consensus size: 47
71681071 TTAGGATTCT
* * *
71681081 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
71681128 ATGTGATGAATGTGAAAGTGTATATAATTGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT-A-TGTGATAAGGCCTAATGGCCG
*
71681177 ATGTGATTAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
71681224 ATGTGATGAATGTAAAAGTGTATATATGTGAT-A-GCCTAATAG-CG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
71681268 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
71681315 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
71681362 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
71681397 TCCGAAGGGC
Statistics
Matches: 246, Mismatches: 17, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
44 33 0.13
45 9 0.04
46 9 0.04
47 149 0.61
48 2 0.01
49 44 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:71681298 original size:25 final size:25
Alignment explanation
Indices: 71681268--71681346 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
71681258 CCTAATAGCG
71681268 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
71681293 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
71681315 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
71681340 ATGTGAT
1 ATGTGAT
71681347 AGGGCCGAGT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 15 0.38
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:71681311 original size:91 final size:93
Alignment explanation
Indices: 71681081--71681402 Score: 434
Period size: 91 Copynumber: 3.4 Consensus size: 93
71681071 TTAGGATTCT
* * * *
71681081 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
71681145 GTGTATATAATTGTGATAAGGCCTAATGGCCG
65 GTGTATAT-A-TGTGAT-AGGCCTAATGGCCG
* * *
71681177 ATGTGATTAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG
*
71681242 TGTATATATGTGATA-GCCTAATAG-CG
66 TGTATATATGTGATAGGCCTAATGGCCG
*
71681268 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG
* * *
71681333 TGTATATATGTGATAGGGCCGAGTGGCCA
66 TGTATATATGTGATA-GGCCTAATGGCCG
* * * *
71681362 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCCGAA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
71681403 GGGCATTTGT
Statistics
Matches: 204, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
91 78 0.38
92 8 0.04
93 7 0.03
94 44 0.22
95 2 0.01
96 65 0.32
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (93 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAGGCCTAATGGCCG
Found at i:71681327 original size:138 final size:142
Alignment explanation
Indices: 71681102--71681394 Score: 432
Period size: 138 Copynumber: 2.1 Consensus size: 142
71681092 GTGAACATGC
* *
71681102 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAATTGTGATAAGGC
1 ATATATGTGAT-AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAATTGTGATAAGGC
* * * * * *
71681167 CTAATGGCCGATGTGATTAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
65 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
71681232 AATGTAAAAGTGT
130 AATGTAAAAGTGT
71681245 ATATATGTGATA-GCCTAATAG-CGATGTGATGAATGTGAAAGTGTATAT-A-TGTGATAAGGCC
1 ATATATGTGATAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAATTGTGATAAGGCC
* * *
71681306 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGA
*
71681371 ATGTGAAAGTGT
131 ATGTAAAAGTGT
*
71681383 ATAAATGTGATA
1 ATATATGTGATA
71681395 AGTCCGAAGG
Statistics
Matches: 137, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
138 90 0.66
139 1 0.01
140 27 0.20
141 8 0.06
142 1 0.01
143 10 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATATATGTGATAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAATTGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGA
ATGTAAAAGTGT
Found at i:71681655 original size:37 final size:37
Alignment explanation
Indices: 71681614--71681691 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
71681604 CCGAGCTCTA
* * *
71681614 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
71681651 AAGA-CCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
71681687 AAGAC
1 AAGAC
71681692 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 32 0.89
37 4 0.11
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:71687602 original size:28 final size:28
Alignment explanation
Indices: 71687534--71687687 Score: 220
Period size: 28 Copynumber: 5.5 Consensus size: 28
71687524 GCACTAATTG
* * * * *
71687534 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
71687563 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71687591 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
71687619 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71687647 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71687674 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
71687688 GACTTAATAT
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.65
29 17 0.15
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71690119 original size:27 final size:27
Alignment explanation
Indices: 71690089--71690261 Score: 186
Period size: 27 Copynumber: 6.4 Consensus size: 27
71690079 TGGATAAGTT
*
71690089 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
71690116 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
71690143 GTAGAATTACCGAAATAGCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
71690170 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ** *
71690197 GTAGAAATATTGAAGTACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
71690224 GTAGAATTAGC-AAGATACCCTTGTGGG
1 GTAGAATTACCGAA-ATACCCCTGTAGG
*
71690251 GTAAAATTACC
1 GTAGAATTACC
71690262 ATTTTGCCCC
Statistics
Matches: 120, Mismatches: 25, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 2 0.02
27 118 0.98
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:71690959 original size:27 final size:26
Alignment explanation
Indices: 71690915--71690966 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71690905 CTCGCTGCAA
*
71690915 TCTGGTGCCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
71690942 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
71690967 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:71704206 original size:27 final size:26
Alignment explanation
Indices: 71704171--71704282 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
71704161 AGCATGGCTG
* *
71704171 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
71704197 CCAGATACAGATAATCGTGGCAGACCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
71704225 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
71704252 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
71704279 CCAG
1 CCAG
71704283 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:71704235 original size:54 final size:54
Alignment explanation
Indices: 71704171--71704282 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
71704161 AGCATGGCTG
*
71704171 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGACCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGACCCA
* * * *
71704225 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGACCCA
71704279 CCAG
1 CCAG
71704283 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGACCCA
Found at i:71704450 original size:28 final size:26
Alignment explanation
Indices: 71704388--71704450 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
71704378 AAAGTAACCC
** *
71704388 TAGGGGTATAATGGTAATTTTACACC
1 TAGGGGTATAACAGTAATTTTACACA
*
71704414 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ACACA
71704442 TAGGGGTAT
1 TAGGGGTAT
71704451 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTACACA
Found at i:71710939 original size:19 final size:19
Alignment explanation
Indices: 71710915--71710952 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71710905 GAGCGAGACT
71710915 TTGCTACTTTAGTGGATAA
1 TTGCTACTTTAGTGGATAA
71710934 TTGCTACTTTAGTGGATAA
1 TTGCTACTTTAGTGGATAA
71710953 GGCGAAGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (19 bp):
TTGCTACTTTAGTGGATAA
Found at i:71721554 original size:47 final size:46
Alignment explanation
Indices: 71721436--71721564 Score: 132
Period size: 46 Copynumber: 2.8 Consensus size: 46
71721426 TTTCACCCAT
* * * * * **
71721436 AATGAACTTGGAACGCAACTCAACGAGCTCGGGTGGTCACATCCAC
1 AATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTGCATCCAC
* * *
71721482 AATGATCTCGGAACACAACTCAACGAGTTTGGATGCTTGCATCCAT
1 AATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTGCATCCAC
* * *
71721528 AAGTGAACTCGGAATATAACTTAACGAGTTCGGATGC
1 AA-TGAACTCGGAACACAACTCAACGAGTTCGGATGC
71721565 CTCATAATTC
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
46 38 0.57
47 29 0.43
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.22
Consensus pattern (46 bp):
AATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTGCATCCAC
Found at i:71725359 original size:17 final size:17
Alignment explanation
Indices: 71725337--71725379 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
71725327 GAGATGATTT
*
71725337 GTGAATTGGTATGTTTG
1 GTGAATTGATATGTTTG
71725354 GTGAATTGATATGTTTG
1 GTGAATTGATATGTTTG
*
71725371 GGGAATTGA
1 GTGAATTGA
71725380 GCATAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (17 bp):
GTGAATTGATATGTTTG
Found at i:71730009 original size:33 final size:33
Alignment explanation
Indices: 71729972--71730038 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
71729962 CTAAGCCCGG
*
71729972 ATCAGTAACAAT-TGGGCCTGAGCCCTATTCAGT
1 ATCAGT-ACAATCTGGGCCTGAGCCCTATACAGT
* *
71730005 ATCAGTACAGTCTGGGCCTTAGCCCTATACAGT
1 ATCAGTACAATCTGGGCCTGAGCCCTATACAGT
71730038 A
1 A
71730039 ATAGCGTGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (33 bp):
ATCAGTACAATCTGGGCCTGAGCCCTATACAGT
Found at i:71732262 original size:44 final size:43
Alignment explanation
Indices: 71732212--71732332 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
71732202 TCAGGCCTCA
* *
71732212 GCCTAGCAAGCTTTAA-GTTGGTGA-ATAATATTATCGGGCTTCGG
1 GCCTAGCAAGCTATAATGCTGGTGAGAT-A-A-TATCGGGCTTCGG
*
71732256 GCCTAGCAGGCTATAATGCTGGTGAGATAATATCGGGCTTCGG
1 GCCTAGCAAGCTATAATGCTGGTGAGATAATATCGGGCTTCGG
* * * *
71732299 GCCTAGCAGGCTATAATGCCGGTGAAATGATATC
1 GCCTAGCAAGCTATAATGCTGGTGAGATAATATC
71732333 ATGCTTCAAG
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
43 44 0.64
44 15 0.22
45 8 0.12
46 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
GCCTAGCAAGCTATAATGCTGGTGAGATAATATCGGGCTTCGG
Found at i:71732293 original size:43 final size:43
Alignment explanation
Indices: 71732238--71732366 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
71732228 GTTGGTGAAT
* *
71732238 AATATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
*
71732281 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** ** * *
71732324 AATGATATCATGCTTCAAGTCTAGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
71732366 A
1 A
71732367 TGAGTTCAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 12 0.16
43 63 0.84
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:71732385 original size:41 final size:43
Alignment explanation
Indices: 71732301--71732393 Score: 122
Period size: 41 Copynumber: 2.2 Consensus size: 43
71732291 GGCTTCGGGC
* *
71732301 CTAGCAGGCTATAATGCCGGTGAAATGATATCATGCTTCAAGT
1 CTAGCAGGCGATAATGCCGGTGAAATGATATCATGCTTAAAGT
71732344 CTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCA-GACTTAAAGT
1 CTAGCAGGCGATAATGCCGGTGAAATGA-TATCATG-CTTAAAGT
71732385 CTAGCAGGC
1 CTAGCAGGC
71732394 TTCGGGCCAG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
40 1 0.02
41 24 0.52
42 11 0.24
43 10 0.22
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (43 bp):
CTAGCAGGCGATAATGCCGGTGAAATGATATCATGCTTAAAGT
Found at i:71732432 original size:40 final size:40
Alignment explanation
Indices: 71732404--71732487 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
71732394 TTCGGGCCAG
*
71732404 TGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCCGA
1 TGATGAATTCGGGTTTAAAACCTAGCAGGCTAAAGGCCGA
* *
71732444 TGATGAATTCGGGTTTAAAACCTAGCAGGCTAAATGCCGG
1 TGATGAATTCGGGTTTAAAACCTAGCAGGCTAAAGGCCGA
71732484 TGAT
1 TGAT
71732488 TTGATAAAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (40 bp):
TGATGAATTCGGGTTTAAAACCTAGCAGGCTAAAGGCCGA
Found at i:71734450 original size:26 final size:27
Alignment explanation
Indices: 71734417--71734532 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
71734407 GGCATAATCA
* *
71734417 TCATTTTACCATAC-AGGGATATTATGG
1 TCATTTTACCCTACAAGGG-TATTACGG
* *
71734444 TCA-TTTATCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAAGGGTATTACGG
71734470 TCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTACAAGGGTATTACGG
*
71734497 TTATTTTACCCTAC-A-GGTCATTACGG
1 TCATTTTACCCTACAAGGGT-ATTACGG
71734523 TCATTTTACC
1 TCATTTTACC
71734533 TATTTTAGGT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
25 3 0.04
26 34 0.44
27 41 0.53
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGTATTACGG
Found at i:71734474 original size:53 final size:53
Alignment explanation
Indices: 71734417--71734532 Score: 155
Period size: 53 Copynumber: 2.2 Consensus size: 53
71734407 GGCATAATCA
* *
71734417 TCATTTTACCATAC-AGGGATATTATGGTCA-TTTATCCTACAAGGGCATTACGG
1 TCATTTTACCATACAAGGG-TATTACGGTCATTTTACCCTAC-AGGGCATTACGG
* * *
71734470 TCATTTTACCCTACAAGGGTATTACGGTTATTTTACCCTACAGGTCATTACGG
1 TCATTTTACCATACAAGGGTATTACGGTCATTTTACCCTACAGGGCATTACGG
71734523 TCATTTTACC
1 TCATTTTACC
71734533 TATTTTAGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 43 0.77
54 13 0.23
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (53 bp):
TCATTTTACCATACAAGGGTATTACGGTCATTTTACCCTACAGGGCATTACGG
Found at i:71743121 original size:23 final size:23
Alignment explanation
Indices: 71743095--71743142 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
71743085 GATTATTGAG
71743095 AACATGTTGAGCATGTCGAATAA
1 AACATGTTGAGCATGTCGAATAA
71743118 AACATGTTGAGCATGTCGAATAA
1 AACATGTTGAGCATGTCGAATAA
71743141 AA
1 AA
71743143 GTGAAAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (23 bp):
AACATGTTGAGCATGTCGAATAA
Found at i:71745906 original size:17 final size:19
Alignment explanation
Indices: 71745884--71745920 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
71745874 TTGGGCTTAA
71745884 TGGG-CCACACGGG-CGTG
1 TGGGCCCACACGGGCCGTG
*
71745901 TGGGCCCACATGGGCCGTG
1 TGGGCCCACACGGGCCGTG
71745920 T
1 T
71745921 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.11, C:0.30, G:0.43, T:0.16
Consensus pattern (19 bp):
TGGGCCCACACGGGCCGTG
Found at i:71746217 original size:21 final size:21
Alignment explanation
Indices: 71746188--71746228 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
71746178 AAGTGTACTG
71746188 TACTAGCAGCTCTGCTACAAT
1 TACTAGCAGCTCTGCTACAAT
* *
71746209 TACTGGCAGTTCTGCTACAA
1 TACTAGCAGCTCTGCTACAA
71746229 CTATTGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (21 bp):
TACTAGCAGCTCTGCTACAAT
Found at i:71756938 original size:38 final size:38
Alignment explanation
Indices: 71756895--71757103 Score: 157
Period size: 38 Copynumber: 5.0 Consensus size: 38
71756885 TTTCAAATTA
* *
71756895 ACATGTATAACCGTGGCATATCCACTTAGCACCAAGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* * *
71756933 ACATGTTTAACCGTGGTATATCCAGTTAGCACGACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
71756974 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
71757018 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTACCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
*
71757066 ACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
71757104 TTTCCATTTC
Statistics
Matches: 137, Mismatches: 17, Indels: 34
0.73 0.09 0.18
Matches are distributed among these distances:
38 60 0.44
39 1 0.01
40 2 0.01
41 2 0.01
42 3 0.02
43 1 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 26 0.19
48 34 0.25
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:71757049 original size:48 final size:48
Alignment explanation
Indices: 71756935--71757073 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
71756925 ACCAAGTTAC
* * * *
71756935 ATGTTTAACCGTGGTATATCCAGTTAGCACGACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
71756982 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
71757030 ATGTGTAATCGTGGTATATCCACTTACCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
71757074 AACCGTGGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 32 0.40
48 48 0.60
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:71757077 original size:133 final size:131
Alignment explanation
Indices: 71756861--71757103 Score: 333
Period size: 133 Copynumber: 1.8 Consensus size: 131
71756851 ACATGTAATT
* * * * *
71756861 GTGGCATATGCACTTAGCACCACTTTTCAAATTAACATGTATAACCGTGGCATATCCACTTAGCA
1 GTGGCATATCCACTTAGCACCACGTTACAAATCAACATGTATAACCGTGGCATATCCACTTACCA
* * * *
71756926 CCAAGTTACATGTTTAACCGTGGTATATCCAGTTAGCACGACGTTAATGAATCAATATATGTAAC
66 CCAAGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
71756991 C
131 C
* * * * *
71756992 GTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCACTTAC
1 GTGGCATATCCACTTAGCACCACGTTACA--AATCAACATGTATAACCGTGGCATATCCACTTAC
*
71757057 CACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
64 CACCAAGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
71757104 TTTCCATTTC
Statistics
Matches: 95, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
131 26 0.27
133 69 0.73
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (131 bp):
GTGGCATATCCACTTAGCACCACGTTACAAATCAACATGTATAACCGTGGCATATCCACTTACCA
CCAAGTTACACGTATAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAC
C
Found at i:71764809 original size:27 final size:26
Alignment explanation
Indices: 71764779--71764861 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
71764769 ATCTCATATC
*
71764779 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGG-TAGAATTACTGAAATACCCT
* *
71764806 TGTAGTGTAGAATTACTGAAATGCCCC
1 TGTAG-GTAGAATTACTGAAATACCCT
**
71764833 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTA-GGTAGAATTACTGAAATACCCT
71764860 TG
1 TG
71764862 GTTTATAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 45 0.96
28 2 0.04
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (26 bp):
TGTAGGTAGAATTACTGAAATACCCT
Found at i:71764873 original size:27 final size:27
Alignment explanation
Indices: 71764843--71764955 Score: 156
Period size: 27 Copynumber: 4.2 Consensus size: 27
71764833 TGTAGGGTAG
* * *
71764843 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
71764870 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
71764897 AATTACCAAAATACCCCTACTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
71764924 AATTACCAAAATACCTCT-GATTTGTGA
1 AATTACCAAAATACCCCTAG-TTTGTAA
71764951 AATTA
1 AATTA
71764956 ATGAAATACC
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:71764963 original size:54 final size:54
Alignment explanation
Indices: 71764867--71765024 Score: 142
Period size: 54 Copynumber: 2.9 Consensus size: 54
71764857 CCTTGGTTTA
* * *
71764867 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTACTTTG
1 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTAACAAAATACCCTCGAC-CTG
* * **
71764921 TAAAATTACCAAAATACCTCT-GATTTGTGAAATTAATGAAATACCCTCGACCTG
1 TAAAATTACCAAAATACCCCTAG-TTTGTAAAATTAACAAAATACCCTCGACCTG
** * * * * *
71764975 TAAAATTACTGAAATA-CCCTCGACTTATAAAATTACCAAAGTACCCTCGA
1 TAAAATTACCAAAATACCCCTAG-TTTGTAAAATTAACAAAATACCCTCGA
71765025 TTTACAGAAT
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
53 4 0.05
54 77 0.92
55 3 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCCTAGTTTGTAAAATTAACAAAATACCCTCGACCTG
Found at i:71764963 original size:81 final size:80
Alignment explanation
Indices: 71764843--71765028 Score: 187
Period size: 81 Copynumber: 2.3 Consensus size: 80
71764833 TGTAGGGTAG
* * **
71764843 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAA
1 AATTACCAAAATACCC-TGATTTATAAAATTAACAAAATA-CCCTAGACCTGTAAAATTACCAAA
* *
71764907 ATACCC-CTACTTTGTAA
64 ATACCCTCGAC-TTATAA
* * ** * **
71764924 AATTACCAAAATACCTCTGATTTGTGAAATTAATGAAATACCCTCGACCTGTAAAATTACTGAAA
1 AATTACCAAAATACC-CTGATTTATAAAATTAACAAAATACCCTAGACCTGTAAAATTACCAAAA
71764989 TACCCTCGACTTATAA
65 TACCCTCGACTTATAA
*
71765005 AATTACCAAAGTACCCTCGATTTA
1 AATTACCAAAATACCCT-GATTTA
71765029 CAGAATTATC
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
80 7 0.08
81 75 0.87
82 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (80 bp):
AATTACCAAAATACCCTGATTTATAAAATTAACAAAATACCCTAGACCTGTAAAATTACCAAAAT
ACCCTCGACTTATAA
Found at i:71765010 original size:27 final size:27
Alignment explanation
Indices: 71764950--71765065 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
71764940 CTGATTTGTG
* * *
71764950 AAATTAATGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACTTATA
71764977 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACTGAAATACCCTCGACTTATA
* * *
71765004 AAATTAC-CAAAGTACCCTCGATTTACA
1 AAATTACTGAAA-TACCCTCGACTTATA
* *** *
71765031 GAATTA-TCGTTTTACCCTCGATTTATA
1 AAATTACT-GAAATACCCTCGACTTATA
71765058 AAATTACT
1 AAATTACT
71765066 ATTTTACCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 3 0.04
27 68 0.94
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTTATA
Found at i:71765036 original size:54 final size:55
Alignment explanation
Indices: 71764976--71765091 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 55
71764966 CTCGACCTGT
71764976 AAAATTACT-GAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACTCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTAC
* *** * * *** *
71765030 AGAATTA-TCGTTTTACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTAC
1 AAAATTACTCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTAC
71765084 AAAATTAC
1 AAAATTAC
71765092 CGTTTTACCC
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
53 1 0.02
54 48 0.98
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (55 bp):
AAAATTACTCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTAC
Found at i:71765047 original size:81 final size:81
Alignment explanation
Indices: 71764962--71765287 Score: 218
Period size: 81 Copynumber: 4.1 Consensus size: 81
71764952 ATTAATGAAA
* *
71764962 TACCCTCGACCTGTAAAATTACTGA-AATACCCTCGACTTATAAAATTACCAAAGTACCCTCGAT
1 TACCCTCGACCTATAAAATTACT-ATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGAT
*
71765026 TTACAGAATTA-TCGTTT
65 TTACAGAATTACT-ATTT
** ** * * ****
71765043 TACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGACCTATAAAATTACTATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATT
71765108 TACAGAATTACTATTT
66 TACAGAATTACTATTT
* ** * ** * * * ****
71765124 TACCCTCAATGTACAAAATTA-TCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGAT
1 TACCCTCGACCTATAAAATTACT-ATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGAT
*
71765188 TTATAGAATTACTATTT
65 TTACAGAATTACTATTT
* ** * * * *** *
71765205 TACCCTCAATTTACAAAATTACCT-T--T--CCTCGATTTACAGAATTACCATTTTACCCTTGAT
1 TACCCTCGACCTATAAAATTA-CTATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGAT
*
71765265 TTATAGAATTACTATTT
65 TTACAGAATTACTATTT
71765282 TACCCT
1 TACCCT
71765288 TGATTTACAG
Statistics
Matches: 216, Mismatches: 24, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
77 54 0.25
79 1 0.00
80 2 0.01
81 157 0.73
82 1 0.00
83 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGACCTATAAAATTACTATAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATT
TACAGAATTACTATTT
Found at i:71765070 original size:27 final size:27
Alignment explanation
Indices: 71765016--71765340 Score: 358
Period size: 27 Copynumber: 12.2 Consensus size: 27
71765006 ATTACCAAAG
*
71765016 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* *
71765043 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * **
71765070 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
71765097 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
71765124 TACCCTCAATGTACAAAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-ATTT
*
71765151 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
*
71765178 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
71765205 TACCCTCAATTTACAAAATTAC--CTT
1 TACCCTCGATTTACAGAATTACTATTT
*
71765230 T--CCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
71765255 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* **
71765282 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
71765309 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
71765336 TACCC
1 TACCC
71765341 CTAGGGTGTT
Statistics
Matches: 254, Mismatches: 37, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
23 17 0.07
25 6 0.02
26 1 0.00
27 228 0.90
28 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:71765096 original size:54 final size:54
Alignment explanation
Indices: 71764989--71765340 Score: 399
Period size: 54 Copynumber: 6.6 Consensus size: 54
71764979 ATTACTGAAA
* * *** * *
71764989 TACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * *
71765043 TACCCTCGATTTATAAAATTACTATTTTACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * * * * *
71765097 TACCCTCGATTTACAGAATTACTATTTTACCCTCAATGTACAAAATTATCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * * * *
71765151 TACCCTCGATTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACT-ATTTTACCCTCGATTTACAGAATTACCATTT
* * *
71765205 TACCCTCAATTTACAAAATTAC--CTTT--CCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
* * * *
71765255 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
*
71765309 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTATTTTACCC
71765341 CTAGGGTGTT
Statistics
Matches: 255, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
50 40 0.16
52 6 0.02
53 1 0.00
54 208 0.82
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:71765620 original size:27 final size:26
Alignment explanation
Indices: 71765576--71765627 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71765566 CTCGCTGCAA
*
71765576 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
71765603 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
71765628 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:71765695 original size:26 final size:27
Alignment explanation
Indices: 71765666--71765725 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
71765656 CCAAATATAT
*
71765666 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
71765692 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
71765719 ATATCTG
1 ATATCTG
71765726 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:71765881 original size:6 final size:6
Alignment explanation
Indices: 71765844--71765898 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
71765834 TTGCATTCAC
* * *
71765844 ATTCTG CTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
71765893 ATTCTG
1 ATTCTG
71765899 TCACCTGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 2 0.05
6 34 0.85
7 3 0.08
8 1 0.03
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:71765935 original size:37 final size:37
Alignment explanation
Indices: 71765838--71765928 Score: 103
Period size: 37 Copynumber: 2.5 Consensus size: 37
71765828 TTGGGATTGC
* * * *
71765838 ATTCACATTCTGCTTTTGATTCTGTTACCTGATACTG
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTG
* *
71765875 ATTCTGATTCTGATTCTGATTCTGTCACCTGATTCTTG
1 ATTCTCATTCTGATTCTGATTCTGTCACCTGATAC-TG
*
71765913 -TTCTCATTTTGATTCT
1 ATTCTCATTCTGATTCT
71765929 AGTTCTGATA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
37 43 0.96
38 2 0.04
ACGTcount: A:0.16, C:0.21, G:0.13, T:0.49
Consensus pattern (37 bp):
ATTCTCATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:71767856 original size:27 final size:27
Alignment explanation
Indices: 71767798--71767878 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
71767788 AATCTCATAT
* * *
71767798 CTGTAGGCTAGCATTACTGAAATACCT
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
71767825 TTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
**
71767852 CTGTAGGGTAGAATTACCAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
71767879 TTGGTTTATA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:71767893 original size:27 final size:27
Alignment explanation
Indices: 71767863--71768058 Score: 189
Period size: 27 Copynumber: 7.3 Consensus size: 27
71767853 TGTAGGGTAG
* *
71767863 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
71767890 AATTGCCAAAATA-CCTCTGGTTTGTAA
1 AATTACCAAAATACCCT-TGATTTGTAA
*
71767917 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
71767944 AATTACCAAAATACCTTTGATTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
*** **
71767971 AATTAATGAAATACCCTTGACATGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
71767998 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
71768025 AATTACCAAAGTACCCTCGATTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
71768052 AATTACC
1 AATTACC
71768059 TTTTTACCCT
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.02
27 136 0.96
28 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:71768066 original size:27 final size:27
Alignment explanation
Indices: 71768036--71768418 Score: 445
Period size: 27 Copynumber: 14.2 Consensus size: 27
71768026 ATTACCAAAG
*
71768036 TACCCTCGATTTATAAAATTACCTTTT
1 TACCCTCGATTTACAAAATTACCTTTT
*
71768063 TACCCTCGATTTACAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* *
71768090 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
*
71768117 TACCCTCGATTTACAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* * *
71768144 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
*
71768171 TACCCTCAATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
*
71768198 TACCCTCGATTTACAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
*
71768225 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
* * *
71768252 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
71768279 TACCCTCGATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* * *
71768306 TATCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
* * *
71768333 TACCCTCAATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* * *
71768360 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
* *
71768387 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
71768414 TACCC
1 TACCC
71768419 CTAGGGTGTT
Statistics
Matches: 308, Mismatches: 38, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.02
27 297 0.96
28 5 0.02
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCTTTT
Found at i:71768067 original size:54 final size:54
Alignment explanation
Indices: 71768009--71768418 Score: 523
Period size: 54 Copynumber: 7.6 Consensus size: 54
71767999 ATTACTGAAA
* * * *** * * *
71768009 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCTTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
71768063 TACCCTCGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
71768117 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * **
71768171 TACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
71768225 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
71768279 TACCCTCGATTTACAAAATTACTATTTTATCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
71768333 TACCCTCAATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
*
71768387 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTATTTTACCC
71768419 CTAGGGTGTT
Statistics
Matches: 319, Mismatches: 37, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 319 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:71768448 original size:81 final size:82
Alignment explanation
Indices: 71768036--71768418 Score: 533
Period size: 81 Copynumber: 4.7 Consensus size: 82
71768026 ATTACCAAAG
* * * *
71768036 TACCCTCGATTTATAAAATTACCT-TTTTACCCTCGATTTACAGAATTACTATTTTACCCTCA-A
1 TACCCTCGATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGA
* * **
71768099 TTTACAAAATTACCGTTT
65 TTTATAGAATTACTATTT
* * *
71768117 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCA-AT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGAT
* *
71768181 TTACAAAATTACTATTT
66 TTATAGAATTACTATTT
71768198 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGAT
*
71768262 TTATAGAATTACCATTT
66 TTATAGAATTACTATTT
* * *
71768279 TACCCTCGATTTACAAAATTACTATTTTATCCTCGATTTACAGAATTACCATTTTACCCTCA-AT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGAT
71768343 TTATAGAATTACTATTT
66 TTATAGAATTACTATTT
* ** *
71768360 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCC
71768419 CTAGGGTGTT
Statistics
Matches: 273, Mismatches: 26, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
80 2 0.01
81 271 0.99
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (82 bp):
TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGAT
TTATAGAATTACTATTT
Found at i:71768958 original size:31 final size:31
Alignment explanation
Indices: 71768923--71769026 Score: 154
Period size: 31 Copynumber: 3.4 Consensus size: 31
71768913 TTGCATTCAC
* * *
71768923 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
* * *
71768954 ATTCTGATTCTAATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
71768985 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
71769016 ATTCTGATTCT
1 ATTCTGATTCT
71769027 CATTTTGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:71768962 original size:6 final size:6
Alignment explanation
Indices: 71768923--71769047 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
71768913 TTGCATTCAC
* * *
71768923 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
71768972 -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
71769022 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
71769048 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 5 0.06
6 73 0.81
7 9 0.10
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:71769024 original size:37 final size:34
Alignment explanation
Indices: 71768923--71769038 Score: 100
Period size: 31 Copynumber: 3.5 Consensus size: 34
71768913 TTGCATTCAC
* * *
71768923 ATTCTGATTTTGATTCTGTTA-C--CTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTACTGATTCTG
* *
71768954 ATTCTGATTCTAATTCTGTCACCTA---ATTTTG
1 ATTCTGATTCTGATTCTGTCACCTACTGATTCTG
71768985 ATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCT-A--CTGATTCTG
* *
71769022 ATTCTCATTTTGATTCT
1 ATTCTGATTCTGATTCT
71769039 AGTTCTGATA
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
31 45 0.67
32 2 0.03
37 20 0.30
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (34 bp):
ATTCTGATTCTGATTCTGTCACCTACTGATTCTG
Found at i:71779875 original size:27 final size:28
Alignment explanation
Indices: 71779763--71779888 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
71779753 CATGAGATTG
* * * *
71779763 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
71779792 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71779820 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71779848 GCACTAAGTGTGCAAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71779875 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
71779889 GACTTAATAT
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.26
28 47 0.53
29 18 0.20
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71779878 original size:55 final size:57
Alignment explanation
Indices: 71779763--71779888 Score: 175
Period size: 55 Copynumber: 2.2 Consensus size: 57
71779753 CATGAGATTG
* * * *
71779763 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATA
* *
71779820 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATA
*
71779875 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
71779889 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.37
56 21 0.34
57 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:71779899 original size:27 final size:27
Alignment explanation
Indices: 71779791--71779901 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
71779781 TAAATTGTAC
** * *
71779791 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
71779819 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
71779847 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
71779874 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
71779901 A
1 A
71779902 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:71784240 original size:46 final size:46
Alignment explanation
Indices: 71784187--71784359 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
71784177 TGGTTGAGCA
71784187 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
71784233 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
71784278 CATCCGAACTCGTTGAGTTTAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71784326 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71784360 GGGGTGGGTT
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.57
47 26 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71784302 original size:93 final size:93
Alignment explanation
Indices: 71784184--71784354 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
71784174 GGATGGTTGA
* * * *
71784184 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71784249 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
71784277 GCATCCGAACTCGTTGAGTTTAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71784342 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71784355 ACTTAGGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:71786665 original size:27 final size:27
Alignment explanation
Indices: 71786633--71786865 Score: 256
Period size: 27 Copynumber: 8.7 Consensus size: 27
71786623 CACATCACAT
*
71786633 AGGGCAAAACAGTCATCTTACCAT-ATA
1 AGGGCAAAACAGTCATTTTACC-TCATA
* * *
71786660 AGGGCAAAATAGTCATCTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCTCATA
* * *
71786687 AGGACAAAATAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCTCATA
* * *
71786714 GGGGCAAAGCAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCTCATA
* *
71786741 AGGGCAAAATAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCTCATA
* * *
71786768 AGGGCAAAATAGTCATTTTACATCATG
1 AGGGCAAAACAGTCATTTTACCTCATA
* *
71786795 AGGGAAAAATC-GTCATTTTACCTCATG
1 AGGGCAAAA-CAGTCATTTTACCTCATA
*
71786822 AGGGAAAAACAGTCA-TTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCTCATA
*
71786848 AGGGCAAAACAATCATTT
1 AGGGCAAAACAGTCATTT
71786866 ATTAATATGG
Statistics
Matches: 180, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.14
27 155 0.86
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCTCATA
Found at i:71786727 original size:81 final size:79
Alignment explanation
Indices: 71786628--71786865 Score: 286
Period size: 81 Copynumber: 3.0 Consensus size: 79
71786618 ATATACACAT
* *
71786628 CACATA-GGGCAAAACAGTCATCTTACCATATAAGGGCAAAATAGTCATCTTACCTCATGAGGAC
1 CACATAGGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAGTCAT-TTACCTCATGAGGGC
71786692 AAAATAGTCATTTTA
65 AAAATAGTCATTTTA
* *
71786707 CCACATAGGGGCAAAGCAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTACCTCATGAGGG
1 -CACATAGGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAGTCA-TTTACCTCATGAGGG
71786772 CAAAATAGTCATTTTA
64 CAAAATAGTCATTTTA
* * * * *
71786788 CATCAT-GAGGGAAAAATC-GTCATTTTACC-TCATGAGGGAAAAACAGTCATTTACCTCATAAG
1 CA-CATAG-GGGCAAAA-CAGTCATTTTACCAT-ATAAGGGCAAAATAGTCATTTACCTCATGAG
* *
71786850 GGCAAAACAATCATTT
62 GGCAAAATAGTCATTT
71786866 ATTAATATGG
Statistics
Matches: 139, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
80 35 0.25
81 102 0.73
82 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (79 bp):
CACATAGGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAGTCATTTACCTCATGAGGGCA
AAATAGTCATTTTA
Found at i:71790762 original size:93 final size:93
Alignment explanation
Indices: 71790655--71790825 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71790645 GCCCCTAAGT
* *
71790655 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71790720 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
71790748 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71790813 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71790826 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:71790822 original size:46 final size:46
Alignment explanation
Indices: 71790650--71790822 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
71790640 AACCCGCCCC
* * *
71790650 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
71790696 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
71790744 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
71790789 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71790823 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:71793244 original size:15 final size:15
Alignment explanation
Indices: 71793218--71793273 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
71793208 CAAGGAAACC
71793218 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
71793233 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
71793248 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
71793263 GAATAAAGAAA
1 GAATAAAGAAA
71793274 CCAAGATACG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:71795502 original size:46 final size:43
Alignment explanation
Indices: 71795359--71795494 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 43
71795349 CCCAGCCCTA
*
71795359 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
71795406 CA-TGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATA
1 -AGTGAACTCAGACTCAACTCAACGAGTTC-G-GATGC-CAACCATT
71795452 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CAACCAT
71795495 CCTAGTGACA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 28 0.38
47 28 0.38
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:71797938 original size:27 final size:26
Alignment explanation
Indices: 71797904--71798136 Score: 243
Period size: 27 Copynumber: 8.7 Consensus size: 26
71797894 ACATGCACAT
*
71797904 AGGGCAAAATAGTCATCTTACCATATA
1 AGGGCAAAATAGTCATTTTACC-TATA
*
71797931 AAGGCAAAATAGTCATTTTACCT-TA
1 AGGGCAAAATAGTCATTTTACCTATA
* *
71797956 TGTGGACAAAACAGTCATTTTACCTCATA
1 AG-GG-CAAAATAGTCATTTTACCT-ATA
* *
71797985 AGGGCAAAACAATCATTTTACCATATA
1 AGGGCAAAATAGTCATTTTACC-TATA
* * *
71798012 ACGGCAAAATAGCCATTTTACCACATA
1 AGGGCAAAATAGTCATTTTACC-TATA
* * * *
71798039 AAGGCAAAACAGTCATTTTACCTCTG
1 AGGGCAAAATAGTCATTTTACCTATA
*
71798065 AGGGCAAAATAGTCATTTTACCTCATG
1 AGGGCAAAATAGTCATTTTACCT-ATA
*
71798092 AGGGCAAAACAGTCATTTTACCTCATA
1 AGGGCAAAATAGTCATTTTACCT-ATA
*
71798119 AGGGAAAAATAGTCATTT
1 AGGGCAAAATAGTCATTT
71798137 ATCAATATGG
Statistics
Matches: 175, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
25 2 0.01
26 25 0.14
27 142 0.81
28 3 0.02
29 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (26 bp):
AGGGCAAAATAGTCATTTTACCTATA
Found at i:71798047 original size:81 final size:80
Alignment explanation
Indices: 71797904--71798136 Score: 281
Period size: 81 Copynumber: 2.9 Consensus size: 80
71797894 ACATGCACAT
* * **
71797904 AGGGCAAAATAGTCATCTTACCATATAAAGGCAAAATAGTCATTTTACCTTAT-GTGGACAAAAC
1 AGGGCAAAATAGTCATTTTACCATATAAAGGCAAAATAGTCATTTTACCTCATAAAGG-CAAAAC
71797968 AGTCATTTTACCTCATA
65 AGTCATTTTACCTC-TA
* * * * *
71797985 AGGGCAAAACAATCATTTTACCATATAACGGCAAAATAGCCATTTTACCACATAAAGGCAAAACA
1 AGGGCAAAATAGTCATTTTACCATATAAAGGCAAAATAGTCATTTTACCTCATAAAGGCAAAACA
*
71798050 GTCATTTTACCTCTG
66 GTCATTTTACCTCTA
* * * * * *
71798065 AGGGCAAAATAGTCATTTTACC-TCATGAGGGCAAAACAGTCATTTTACCTCATAAGGGAAAAAT
1 AGGGCAAAATAGTCATTTTACCAT-ATAAAGGCAAAATAGTCATTTTACCTCATAAAGGCAAAAC
71798129 AGTCATTT
65 AGTCATTT
71798137 ATCAATATGG
Statistics
Matches: 130, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 61 0.47
81 66 0.51
82 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (80 bp):
AGGGCAAAATAGTCATTTTACCATATAAAGGCAAAATAGTCATTTTACCTCATAAAGGCAAAACA
GTCATTTTACCTCTA
Found at i:71800352 original size:27 final size:28
Alignment explanation
Indices: 71800311--71800416 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 28
71800301 CAGCCAGAAT
* * *
71800311 AGATA-TTGTGACAGAGTCACTAGATAC
1 AGATATTTGTGGCAGAGCCACCAGATAC
* * *
71800338 AGATA-TTGTGGCAGAGCCACCAAAAAT
1 AGATATTTGTGGCAGAGCCACCAGATAC
71800365 AGATATTTGTGGCAGAGCCACCAGAT-C
1 AGATATTTGTGGCAGAGCCACCAGATAC
*
71800392 AGATATTTGTGGGAGAGCCACCAGA
1 AGATATTTGTGGCAGAGCCACCAGA
71800417 ACGCTTCCTC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 50 0.74
28 18 0.26
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (28 bp):
AGATATTTGTGGCAGAGCCACCAGATAC
Found at i:71800381 original size:55 final size:54
Alignment explanation
Indices: 71800308--71800414 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 54
71800298 TGGCAGCCAG
* *
71800308 AATAGATATTGTGACAGAGTCACTAGATACAGATA-TTGTGGCAGAGCCACCAAA
1 AATAGATATTGTGACAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCACCAAA
* *
71800362 AATAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGGAGAGCCACCA
1 AATAGATA-TTGTGACAGAGCCACCAGATCAGATATTTGTGGCAGAGCCACCA
71800415 GAACGCTTCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
54 14 0.30
55 33 0.70
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AATAGATATTGTGACAGAGCCACCAGATCAGATATTTGTGGCAGAGCCACCAAA
Found at i:71814525 original size:15 final size:15
Alignment explanation
Indices: 71814505--71814535 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71814495 AATGAATGAT
71814505 TTTAATTTTAATTTA
1 TTTAATTTTAATTTA
71814520 TTTAATTTTAATTTA
1 TTTAATTTTAATTTA
71814535 T
1 T
71814536 ATTGATCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTAATTTTAATTTA
Found at i:71814898 original size:42 final size:43
Alignment explanation
Indices: 71814791--71814921 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 43
71814781 CGACATGTGT
* * * *
71814791 TTTCGTGTAAGACCACATCTAGGAC-GTTAGCATCGAT-TTATGA
1 TTTCGTGTAAGACCATATCTGGGACAGTGA-CATCAATATT-TGA
* *
71814834 TTTATGTGTAAGACCATGTCTGGGACA-TCGACATC-ATATTTGA
1 TTT-CGTGTAAGACCATATCTGGGACAGT-GACATCAATATTTGA
* *
71814877 TTTCGTGTAAGACCCTATCTGGGACAGTGGCATCAATATTTGA
1 TTTCGTGTAAGACCATATCTGGGACAGTGACATCAATATTTGA
71814920 TT
1 TT
71814922 GCACGTAAGA
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
42 25 0.34
43 22 0.30
44 25 0.34
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACCATATCTGGGACAGTGACATCAATATTTGA
Found at i:71814930 original size:43 final size:42
Alignment explanation
Indices: 71814841--71814943 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
71814831 TGATTTATGT
* * **
71814841 GTAAGACCATGTCTGGGACATCGACATCATATTTGATTTCGT
1 GTAAGACCATATCTGGGACATCGACATCATATTTGATTGCAC
* *
71814883 GTAAGACCCTATCTGGGACAGT-GGCATCAATATTTGATTGCAC
1 GTAAGACCATATCTGGGACA-TCGACATC-ATATTTGATTGCAC
**
71814926 GTAAGACCACGTCTGGGA
1 GTAAGACCATATCTGGGA
71814944 TGTTGGCATT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 23 0.46
43 27 0.54
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
GTAAGACCATATCTGGGACATCGACATCATATTTGATTGCAC
Found at i:71817455 original size:34 final size:34
Alignment explanation
Indices: 71817407--71817472 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
71817397 CTATTATTGT
* *
71817407 TACTGTATTCGGCTAAGGCTCAT-ACTGATACTGA
1 TACTGTAATAGGCTAAGGC-CATAACTGATACTGA
* *
71817441 TACTGTAATAGGCTATGGCCCTAACTGATACT
1 TACTGTAATAGGCTAAGGCCATAACTGATACT
71817473 AGATTGTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 2 0.07
34 25 0.93
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (34 bp):
TACTGTAATAGGCTAAGGCCATAACTGATACTGA
Found at i:71825547 original size:43 final size:43
Alignment explanation
Indices: 71825390--71825548 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
71825380 TCTGTGTTTT
** * *
71825390 CATGTAAGACCACATCGAGGACATTGGCACCGAT-TTATGATTTA
1 CATGTAAGACCATGTCTAGGACATTGGCATCGATATT-TGA-TTA
* * * * * * *
71825434 CGTGTAATACCATGTTTGGGACATCGACATC-ATATTTGATTT
1 CATGTAAGACCATGTCTAGGACATTGGCATCGATATTTGATTA
* * * *
71825476 CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTA
1 CATGTAAGACCATGTCTAGGACATTGGCATCGATATTTGATTA
* *
71825519 CATGTAAGACCATGTCCAGGACGTTGGCAT
1 CATGTAAGACCATGTCTAGGACATTGGCAT
71825549 TGTACAAGCT
Statistics
Matches: 89, Mismatches: 24, Indels: 5
0.75 0.20 0.04
Matches are distributed among these distances:
42 27 0.30
43 39 0.44
44 23 0.26
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCATGTCTAGGACATTGGCATCGATATTTGATTA
Found at i:71830534 original size:23 final size:23
Alignment explanation
Indices: 71830504--71830591 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 23
71830494 GAGCTGATGC
*
71830504 ACAGTAAGCTCTGACGAGTTGAA
1 ACAGTAAGCTCTGACGAGATGAA
*
71830527 ACAGTAAGCTTTGACGAGATGAA
1 ACAGTAAGCTCTGACGAGATGAA
* * *
71830550 CCAGTAA--TCTGATAAGAGGTGAGA
1 ACAGTAAGCTCTG--ACGAGATGA-A
*
71830574 ACAGTAAGCTCTTACGAG
1 ACAGTAAGCTCTGACGAG
71830592 CTGATATATC
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.06
23 34 0.67
24 11 0.22
26 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (23 bp):
ACAGTAAGCTCTGACGAGATGAA
Found at i:71836158 original size:40 final size:40
Alignment explanation
Indices: 71836121--71836265 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 40
71836111 TGAGGAATGT
*
71836121 TATCAGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
* *
71836161 TATCCGGGCTTAAAGACCCAC-GAGCTAT-ATGCTGGAA-TG
1 TATCCGGGCTTAAAGACCCGCAG-GCT-TCGTGCTGGAATTG
71836200 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 -TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
*
71836241 TATCCGGGCATAAAGACCCGCAGGC
1 TATCCGGGCTTAAAGACCCGCAGGC
71836266 AATGAGCTGG
Statistics
Matches: 93, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
39 4 0.04
40 85 0.91
41 4 0.04
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
Found at i:71843863 original size:40 final size:40
Alignment explanation
Indices: 71843819--71843971 Score: 202
Period size: 40 Copynumber: 3.8 Consensus size: 40
71843809 TGATACTTGA
* *
71843819 GGAATGTTATCCGGGCGTAAAGACCCGCAGGCTTCGTGCT
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
* *
71843859 GGAAT-TGAATCAGGGCTTAAAGACCCGCAGGCTAT-ATGCT
1 GGAATGT-TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCT
*
71843899 GGAATGTTATCCGGGCTTAAAGACTCGCAGGCTTCATGCT
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
* * *
71843939 GGAATGTTATTCGGGCATAAAGACCCGTAGGCT
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCT
71843972 ACGAGCTAGT
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 94 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
Found at i:71843960 original size:80 final size:80
Alignment explanation
Indices: 71843819--71843972 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 80
71843809 TGATACTTGA
* *
71843819 GGAATGTTATCCGGGCGTAAAGACCCGCAGGCTTCGTGCTGGAATTGAATCAGGGCTTAAAGACC
1 GGAATGTTATCCGGGCGTAAAGACCCGCAGGCTTCATGCTGGAATTGAATCAGGGCATAAAGACC
71843884 CGCAGGCTATATGCT
66 CGCAGGCTATATGCT
* * * *
71843899 GGAATGTTATCCGGGCTTAAAGACTCGCAGGCTTCATGCTGGAATGTTATTC-GGGCATAAAGAC
1 GGAATGTTATCCGGGCGTAAAGACCCGCAGGCTTCATGCTGGAAT-TGAATCAGGGCATAAAGAC
*
71843963 CCGTAGGCTA
65 CCGCAGGCTA
71843973 CGAGCTAGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 62 0.94
81 4 0.06
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
GGAATGTTATCCGGGCGTAAAGACCCGCAGGCTTCATGCTGGAATTGAATCAGGGCATAAAGACC
CGCAGGCTATATGCT
Found at i:71849477 original size:42 final size:42
Alignment explanation
Indices: 71849365--71849493 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
71849355 ATATCGTACA
* * *
71849365 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATATCG
** * * *
71849408 ATGCC-ACTGTCTTAGATGGGGTATTACACGAATCACATATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGAATCACATATCG
*
71849450 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
71849493 A
1 A
71849494 AAATCCTATG
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
42 36 0.52
43 33 0.48
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:71876969 original size:73 final size:73
Alignment explanation
Indices: 71876879--71877018 Score: 262
Period size: 73 Copynumber: 1.9 Consensus size: 73
71876869 ACAAAAGCTG
71876879 AATTTTTTTTTAGACATATTATAAGCACTCATTTTCTAAATTCCTTCATTACCTATTCAGCCAAC
1 AATTTTTTTTTAGACATATTATAAGCACTCATTTTCTAAATTCCTTCATTACCTATTCAGCCAAC
71876944 TCGTCTGA
66 TCGTCTGA
**
71876952 AATTTTTTTTTAGACATATTATAAGCACTCATTTTCTAAATTCCTTCATTACCTATTTGGCCAAC
1 AATTTTTTTTTAGACATATTATAAGCACTCATTTTCTAAATTCCTTCATTACCTATTCAGCCAAC
71877017 TC
66 TC
71877019 AACTTAACCA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 65 1.00
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (73 bp):
AATTTTTTTTTAGACATATTATAAGCACTCATTTTCTAAATTCCTTCATTACCTATTCAGCCAAC
TCGTCTGA
Found at i:71877351 original size:16 final size:16
Alignment explanation
Indices: 71877330--71877362 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
71877320 TTGTAACGCC
71877330 CCAAAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
*
71877346 CCAAAAATCCTAAAAT
1 CCAAAAATCCCAAAAT
71877362 C
1 C
71877363 TCGATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCAAAAT
Found at i:71878610 original size:16 final size:16
Alignment explanation
Indices: 71878591--71878635 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
71878581 TGGAAAATCT
71878591 CGAAAAGCCAAAATAC
1 CGAAAAGCCAAAATAC
* *
71878607 CGAAAAGCTAAAATGC
1 CGAAAAGCCAAAATAC
* *
71878623 TGAAAAGTCAAAA
1 CGAAAAGCCAAAA
71878636 GTTTGGCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.56, C:0.18, G:0.16, T:0.11
Consensus pattern (16 bp):
CGAAAAGCCAAAATAC
Found at i:71878947 original size:28 final size:28
Alignment explanation
Indices: 71878854--71878962 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 28
71878844 GACTGTAAAT
* *
71878854 GTGAGTTGGGCCTAGT-GGCCATATGAAT
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
* * *
71878882 TTGATTTGGGCCTAATCGGCCACAT-AAA
1 GTGA-TTGGGCCTAATGGGCCATATGAAA
*
71878910 TGTGAATGGGCCTAATGGGCCATATGAAA
1 -GTGATTGGGCCTAATGGGCCATATGAAA
* * *
71878939 GAGATTGGGCATAGTGGGCCATAT
1 GTGATTGGGCCTAATGGGCCATAT
71878963 ATATAGGTAT
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
28 52 0.80
29 13 0.20
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATGAAA
Found at i:71881342 original size:43 final size:43
Alignment explanation
Indices: 71881281--71881485 Score: 296
Period size: 43 Copynumber: 4.9 Consensus size: 43
71881271 GAATATTCAG
*
71881281 ATGATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
71881324 ATGATAACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
71881367 ATGATAATCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
71881410 AT-AT--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
71881450 AT-AT--CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
71881486 AGCTATATCC
Statistics
Matches: 153, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 67 0.44
42 2 0.01
43 84 0.55
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (43 bp):
ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:71881511 original size:39 final size:40
Alignment explanation
Indices: 71881290--71881511 Score: 295
Period size: 43 Copynumber: 5.4 Consensus size: 40
71881280 GATGATAACT
71881290 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CC
* * *
71881333 GGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATGATAATC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CC
* *
71881376 GGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
71881416 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
71881456 GGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
*
71881496 -GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
71881512 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.10
40 74 0.44
42 2 0.01
43 76 0.45
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:71889533 original size:79 final size:80
Alignment explanation
Indices: 71889290--71889552 Score: 334
Period size: 79 Copynumber: 3.2 Consensus size: 80
71889280 CGGATGATAA
*
71889290 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGATAACCGGGCCAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CCGGGCTAAGTCCCGAAGGCAT
*
71889355 TTGTGTGAGTTACTATGAT
63 TTGTGCGAGTTACTAT-AT
* *
71889374 AACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
* *
71889439 TTTGCTAGTTACTATAT
64 TGTGCGAGTTACTATAT
* * *
71889456 CCGGGCTAAGTGCCGAAGACATTTGTGCGA-TTACTATATCCGGGCTAAGTCCCGAAGGCAGTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
71889520 AGCGAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
* *
71889535 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
71889553 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
78 14 0.09
79 44 0.28
80 26 0.16
82 2 0.01
83 34 0.22
85 2 0.01
86 36 0.23
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:71889542 original size:39 final size:40
Alignment explanation
Indices: 71889290--71889552 Score: 334
Period size: 43 Copynumber: 6.5 Consensus size: 40
71889280 CGGATGATAA
71889290 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
71889331 AACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATGAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
71889374 AACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71889416 CCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71889456 CCGGGCTAAGTGCCGAAGACATTTGTGCGA-TTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
71889495 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
71889535 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
71889553 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 51 0.25
40 70 0.35
42 2 0.01
43 79 0.39
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:71891350 original size:47 final size:48
Alignment explanation
Indices: 71891286--71891391 Score: 151
Period size: 47 Copynumber: 2.2 Consensus size: 48
71891276 CCCTTCGGGA
* * * *
71891286 CTTATCACATTTATACACTTTCACATTCATCACATTGGC-CATTCGGC
1 CTTATCACATATATACACTTTCACATCCAACACATTGGCAAATTCGGC
* *
71891333 CTTATCACATATGTACACTTTCTCATCCAACACATTGGCAAATTCGGC
1 CTTATCACATATATACACTTTCACATCCAACACATTGGCAAATTCGGC
71891381 CTTATCACATA
1 CTTATCACATA
71891392 ATTAATACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 34 0.65
48 18 0.35
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
CTTATCACATATATACACTTTCACATCCAACACATTGGCAAATTCGGC
Found at i:71895665 original size:40 final size:39
Alignment explanation
Indices: 71895604--71895839 Score: 301
Period size: 40 Copynumber: 5.9 Consensus size: 39
71895594 GATTACACAT
*
71895604 CACCGGCACGAATGCCTTTCGGGACTTATCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGA-TTATCCCGGATATAA
* * * * *
71895644 CATCGGCACGAATACCCTTCGGGATTTAGCTCGAATATAA
1 CACCGGCACGAATGCCCTTCGGGA-TTATCCCGGATATAA
*
71895684 CACCGGCACGAATGCCCTTCGGGATTTTACCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGATTAT-CCCGGATATAA
*
71895724 CACCGGCACGAATGCCCTTCGGGATTTTGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGATTAT-CCCGGATATAA
* * *
71895764 CACCGGCATGAATGCCCTTCAGGATTTAGCCCGGATATAA
1 CACCGGCACGAATGCCCTTCGGGA-TTATCCCGGATATAA
* *
71895804 CACCAGCACGAATGCCCTTCGGGATTTTGCCCGGAT
1 CACCGGCACGAATGCCCTTCGGGATTAT-CCCGGAT
71895840 CATCGTCGAG
Statistics
Matches: 170, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 4 0.02
40 164 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CACCGGCACGAATGCCCTTCGGGATTATCCCGGATATAA
Found at i:71895817 original size:120 final size:120
Alignment explanation
Indices: 71895604--71895839 Score: 366
Period size: 120 Copynumber: 2.0 Consensus size: 120
71895594 GATTACACAT
* * *
71895604 CACCGGCACGAATGCCTTTCGGGACTTATCCCGGATATAACATCGGCACGAATACCCTTCGGGAT
1 CACCGGCACGAATGCCCTTCGGGACTTATCCCGGATATAACACCGGCACGAATACCCTTCAGGAT
* *
71895669 TTAGCTCGAATATAACACCGGCACGAATGCCCTTCGGGATTTTACCCGGATATAA
66 TTAGCCCGAATATAACACCAGCACGAATGCCCTTCGGGATTTTACCCGGATATAA
* * *
71895724 CACCGGCACGAATGCCCTTCGGGA-TTTTGCCCGGATATAACACCGGCATGAATGCCCTTCAGGA
1 CACCGGCACGAATGCCCTTCGGGACTTAT-CCCGGATATAACACCGGCACGAATACCCTTCAGGA
* *
71895788 TTTAGCCCGGATATAACACCAGCACGAATGCCCTTCGGGATTTTGCCCGGAT
65 TTTAGCCCGAATATAACACCAGCACGAATGCCCTTCGGGATTTTACCCGGAT
71895840 CATCGTCGAG
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
119 3 0.03
120 102 0.97
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (120 bp):
CACCGGCACGAATGCCCTTCGGGACTTATCCCGGATATAACACCGGCACGAATACCCTTCAGGAT
TTAGCCCGAATATAACACCAGCACGAATGCCCTTCGGGATTTTACCCGGATATAA
Found at i:71895837 original size:80 final size:79
Alignment explanation
Indices: 71895604--71895839 Score: 355
Period size: 80 Copynumber: 2.9 Consensus size: 79
71895594 GATTACACAT
* * * *
71895604 CACCGGCACGAATGCCTTTCGGGACTTATCCCGGATATAACATCGGCACGAATACCCTTCGGGAT
1 CACCGGCACGAATGCCCTTCGGGATTTA-CCCGGATATAACACCGGCACGAATGCCCTTCGGGAT
* * *
71895669 TTAGCTCGAATATAA
65 TTTGCCCGGATATAA
71895684 CACCGGCACGAATGCCCTTCGGGATTTTACCCGGATATAACACCGGCACGAATGCCCTTCGGGAT
1 CACCGGCACGAATGCCCTTCGGGA-TTTACCCGGATATAACACCGGCACGAATGCCCTTCGGGAT
71895749 TTTGCCCGGATATAA
65 TTTGCCCGGATATAA
* * *
71895764 CACCGGCATGAATGCCCTTCAGGATTTAGCCCGGATATAACACCAGCACGAATGCCCTTCGGGAT
1 CACCGGCACGAATGCCCTTCGGGATTTA-CCCGGATATAACACCGGCACGAATGCCCTTCGGGAT
71895829 TTTGCCCGGAT
65 TTTGCCCGGAT
71895840 CATCGTCGAG
Statistics
Matches: 144, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
79 4 0.03
80 137 0.95
81 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
CACCGGCACGAATGCCCTTCGGGATTTACCCGGATATAACACCGGCACGAATGCCCTTCGGGATT
TTGCCCGGATATAA
Found at i:71897892 original size:47 final size:47
Alignment explanation
Indices: 71897829--71897932 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
71897819 CCCTTCGGGA
*
71897829 CTTATCACATTTATACACTTTCA-CATTCATCACATTGGCCATTCGGC
1 CTTATCACATTTATACACTTT-ATCATCCATCACATTGGCCATTCGGC
71897876 CTTATCACATTTATACACTTTATCATCCATCACATTGGCCATTCGGC
1 CTTATCACATTTATACACTTTATCATCCATCACATTGGCCATTCGGC
71897923 CTTATCACAT
1 CTTATCACAT
71897933 AATTAATACT
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.02
47 54 0.98
ACGTcount: A:0.26, C:0.30, G:0.08, T:0.37
Consensus pattern (47 bp):
CTTATCACATTTATACACTTTATCATCCATCACATTGGCCATTCGGC
Found at i:71906096 original size:43 final size:42
Alignment explanation
Indices: 71906042--71906129 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 42
71906032 ATATCGTACA
* *
71906042 ATGCCAATGTCCCAGAC-GTAGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACAG-AGTCTTACACG-AATCACACATCG
* *
71906085 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCACACATCG
1 ATGCCAATGTCCCAGACAGAGTCTTACACGAATCACACATCG
71906127 ATG
1 ATG
71906130 GCAACGTCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 14 0.35
43 25 0.62
44 1 0.03
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGAGTCTTACACGAATCACACATCG
Found at i:71907892 original size:43 final size:43
Alignment explanation
Indices: 71907844--71907995 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 43
71907834 CATCCTAGAC
* *
71907844 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
* * *
71907887 GTCTTACATGAAATCAAATA-CGATGTCGA-TGTCCCAGACATG
1 GTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAGACAGG
*
71907929 GTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGAC-GTG
1 GTCTTACACG-AAATCA-AATATCGATGCC-ACTGTCCCAGACAG-G
*
71907973 GTCTTACACGAAATCACATATCG
1 GTCTTACACGAAATCAAATATCG
71907996 GATCCTATGT
Statistics
Matches: 92, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
42 27 0.29
43 37 0.40
44 28 0.30
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAGG
Found at i:71915493 original size:43 final size:42
Alignment explanation
Indices: 71915446--71915539 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
71915436 TCCCAGACGT
* *
71915446 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCTAGACAA
1 GGTCTTACAGGAAATCAAATAT-GATGCCGA-TATCCTAGACAA
* *
71915489 GGTCTTACAGGAAATCAAATATGATGCCGATGTCCTAGACAT
1 GGTCTTACAGGAAATCAAATATGATGCCGATATCCTAGACAA
71915531 GGTCTTACA
1 GGTCTTACA
71915540 CATAAATCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 25 0.54
43 21 0.46
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (42 bp):
GGTCTTACAGGAAATCAAATATGATGCCGATATCCTAGACAA
Found at i:71915528 original size:42 final size:43
Alignment explanation
Indices: 71915446--71915597 Score: 132
Period size: 43 Copynumber: 3.5 Consensus size: 43
71915436 TCCCAGACGT
* *
71915446 GGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAA
1 GGTCTTACAGGAAATCAAATATCGATGCCACTATCCTAGACAA
* *
71915489 GGTCTTACAGGAAATCAAATAT-GATGCCGA-TGTCCTAGACAT
1 GGTCTTACAGGAAATCAAATATCGATGCC-ACTATCCTAGACAA
** * ***
71915531 GGTCTTACACATAAATCACAA-CTCGATGCCAAC-ATCCTAGATGT
1 GGTCTTACA-GGAAATCA-AATATCGATGCC-ACTATCCTAGACAA
* *
71915575 GGTCTTACACGAAATCACATATC
1 GGTCTTACAGGAAATCAAATATC
71915598 AGATCCTATG
Statistics
Matches: 88, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 26 0.30
43 36 0.41
44 26 0.30
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACAGGAAATCAAATATCGATGCCACTATCCTAGACAA
Found at i:71915547 original size:43 final size:43
Alignment explanation
Indices: 71915427--71915597 Score: 131
Period size: 43 Copynumber: 4.0 Consensus size: 43
71915417 AGCTCGTACA
* *
71915427 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACTGTCCTAGACATGGTCTTACA-GTAAATCAAATATCG
* * *
71915470 ATGCCACTATCCTAGACAAGGTCTTACAGGAAATCAAATAT-G
1 ATGCCACTGTCCTAGACATGGTCTTACAGTAAATCAAATATCG
* *
71915512 ATGCCGA-TGTCCTAGACATGGTCTTACACATAAATCACAA-CTCG
1 ATGCC-ACTGTCCTAGACATGGTCTTACA-GTAAATCA-AATATCG
* ** *
71915556 ATGCCAAC-ATCCTAGATGTGGTCTTACACG-AAATCACATATC
1 ATGCC-ACTGTCCTAGACATGGTCTTACA-GTAAATCAAATATC
71915598 AGATCCTATG
Statistics
Matches: 103, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 29 0.28
43 47 0.46
44 27 0.26
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCTAGACATGGTCTTACAGTAAATCAAATATCG
Found at i:71921216 original size:47 final size:47
Alignment explanation
Indices: 71921164--71921772 Score: 510
Period size: 47 Copynumber: 12.6 Consensus size: 47
71921154 GATAATTGTG
* * *
71921164 ATGTGAATGTATATATATGTGATAAGACCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
71921211 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
71921258 ATGTGAAAGTG--TATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
71921303 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *** * *
71921350 ATGTGAAAGTGTATATATGTGATAAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGAAAGTGTATATATGTGAT--AAG-GCCTA-ATG-GCCGATG-TG-AT-G--A
* * **
71921407 ATGTGATGAA-TGTGA-A-A-GTGTATATATGTG-ATAA-GGCCTAATG-GCCGA
1 ATGTGA--AAGTGT-ATATATGTG-ATA-A-G-GCCTAATGGCC-GATGTGATGA
* * *
71921455 CGTGATGAATGTG-A-A-A-GTGTATATATGTG-ATAA-GGCCTAATAGTCGATGTGATGA
1 -ATG-TGAAAGTGTATATATGTG-ATA-A-G-GCCTAATGG-C-------CGATGTGATGA
* *
71921510 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
71921557 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
71921606 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
71921653 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
71921700 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
71921747 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
71921773 TCCCGAAGGG
Statistics
Matches: 478, Mismatches: 45, Indels: 78
0.80 0.07 0.13
Matches are distributed among these distances:
45 43 0.09
47 295 0.62
48 3 0.01
49 52 0.11
50 7 0.01
51 2 0.00
52 5 0.01
53 10 0.02
54 16 0.03
55 11 0.02
56 11 0.02
57 16 0.03
58 4 0.01
59 3 0.01
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:71921379 original size:19 final size:19
Alignment explanation
Indices: 71921355--71921393 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
71921345 GATGAATGTG
71921355 AAAGTGTATATATGTGATA
1 AAAGTGTATATATGTGATA
71921374 AAAGTGTATATATGTGATA
1 AAAGTGTATATATGTGATA
71921393 A
1 A
71921394 GGCCGAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.36
Consensus pattern (19 bp):
AAAGTGTATATATGTGATA
Found at i:71921381 original size:66 final size:66
Alignment explanation
Indices: 71921308--71921440 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
71921298 GATGAATGTG
*
71921308 AAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
71921373 A
66 A
*
71921374 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
71921439 A
66 A
71921440 A
1 A
71921441 GGCCTAATGG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.31
Consensus pattern (66 bp):
AAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
A
Found at i:71921389 original size:113 final size:113
Alignment explanation
Indices: 71921269--71921487 Score: 384
Period size: 113 Copynumber: 1.9 Consensus size: 113
71921259 TGTGAAAGTG
* *
71921269 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
71921334 ATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAAAGTGTA
66 ATAGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAAAGTGTA
*
71921382 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
71921447 ATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAA
66 ATAGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAA
71921488 GGCCTAATAG
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 100 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (113 bp):
TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATAGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAAAGTGTA
Found at i:71921484 original size:94 final size:94
Alignment explanation
Indices: 71921374--71921772 Score: 627
Period size: 94 Copynumber: 4.2 Consensus size: 94
71921364 ATATGTGATA
* *
71921374 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* *
71921439 AAGGCCTAATGGCCGACGTGATGAATGTG
66 AAGGCCGAATGGCCAACGTGATGAATGTG
* *
71921468 AAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
71921533 AAGGCCGAATGGCCAATGTGATGAATGTG
66 AAGGCCGAATGGCCAACGTGATGAATGTG
71921562 AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 AAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * *
71921627 ATAAGGCCTAATAGCCGATGTGATGAATGTG
64 ATAAGGCCGAATGGCCAACGTGATGAATGTG
* *
71921658 AAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
1 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * *
71921723 AGGGCCGAGTGGCCAACGTGATGGATGTG
66 AAGGCCGAATGGCCAACGTGATGAATGTG
*
71921752 AAAGTGTATAAATGTGATAAG
1 AAAGTGTATATATGTGATAAG
71921773 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 23, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
94 191 0.68
96 89 0.32
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCGAATGGCCAACGTGATGAATGTG
Found at i:71921489 original size:160 final size:158
Alignment explanation
Indices: 71921216--71921534 Score: 557
Period size: 160 Copynumber: 2.0 Consensus size: 158
71921206 GATGAATGTG
* *
71921216 AAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATGTGATAA
1 AAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATGTGATAA
*
71921281 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
66 GGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
71921346 ATGAATGTGAAAGTGTATATATGTGATA
131 ATGAATGTGAAAGTGTATATATGTGATA
*
71921374 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTG--TATATGTGAT
* * *
71921439 AAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATG
64 AAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATG
71921504 TGATGAATGTGAAAGTGTATATATGTGATA
129 TGATGAATGTGAAAGTGTATATATGTGATA
71921534 A
1 A
71921535 GGCCGAATGG
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
158 50 0.33
160 102 0.67
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (158 bp):
AAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATGTGATAA
GGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
ATGAATGTGAAAGTGTATATATGTGATA
Found at i:71921583 original size:190 final size:190
Alignment explanation
Indices: 71921380--71921772 Score: 664
Period size: 190 Copynumber: 2.1 Consensus size: 190
71921370 GATAAAAGTG
71921380 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
71921445 TAATGGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGA
66 TAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* *
71921510 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
* *
71921570 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
71921635 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* * *
71921700 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
71921760 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
71921773 TCCCGAAGGG
Statistics
Matches: 191, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
188 10 0.05
189 1 0.01
190 180 0.94
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
Found at i:71923423 original size:46 final size:45
Alignment explanation
Indices: 71923367--71923494 Score: 143
Period size: 46 Copynumber: 2.8 Consensus size: 45
71923357 ATTGAGACGA
*
71923367 GTGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCT-CGAGAT
1 GTGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTACGAGAT
* * *
71923411 GTAAGCCAGTGTAAGACATCTCTGGGACATGCATCAG-CTACGAGAT
1 GT--GCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTACGAGAT
* * *
71923457 GTGTCATTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GTGCCAGTGTAA-AACATGTCTGGGACAT-GCATCGGC
71923495 ACGGATATGT
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
44 10 0.15
45 15 0.22
46 43 0.63
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (45 bp):
GTGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCTACGAGAT
Found at i:71923524 original size:50 final size:47
Alignment explanation
Indices: 71923327--71923626 Score: 174
Period size: 47 Copynumber: 6.4 Consensus size: 47
71923317 GGGTGTTACA
* * * * * *
71923327 GTAAGACCATGTCTGGGATATGGCATCAGTATTGAGACG-AGTGCTAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCA-CGAGATGTAGAGCTAGT
* * *
71923375 GTAA-AACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCCAGT
1 GTAAGACCATGTCTGGGACATGCATCGG-CACGAGATGTAGAGCTAGT
* * * *
71923421 GTAAGA-CATCTCTGGGACATGCATCAGCTACGAGATGT-G-TC-ATT
1 GTAAGACCATGTCTGGGACATGCATCGGC-ACGAGATGTAGAGCTAGT
*
71923465 GTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCTAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCAC-GAGATGT-AGAGCTAGT
* * ** * *
71923515 GTAAGACCATGTTTGGGACATGGCAT-TG-ACTTGATGGATGAGCCAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCACGAGATGTA-GAGCTAGT
* * * ** *
71923562 GTCAGACCATTTTTGGGACATGGCATC-G-ACTTGATGGATA-AGCCAGT
1 GTAAGACCATGTCTGGGACAT-GCATCGGCACGAGAT-G-TAGAGCTAGT
71923609 GTAAGACCATGTCTGGGA
1 GTAAGACCATGTCTGGGA
71923627 TGTGGCATCG
Statistics
Matches: 204, Mismatches: 32, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
44 8 0.04
45 17 0.08
46 61 0.30
47 80 0.39
48 8 0.04
49 3 0.01
50 27 0.13
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
GTAAGACCATGTCTGGGACATGCATCGGCACGAGATGTAGAGCTAGT
Found at i:71923577 original size:47 final size:47
Alignment explanation
Indices: 71923464--71923636 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
71923454 GATGTGTCAT
* * *
71923464 TGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGA-GAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATC-G-ACTTG--ATG-GATGAGCCAG
*
71923514 TGTAAGACCATGTTTGGGACATGGCATTGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
* * *
71923561 TGTCAGACCATTTTTGGGACATGGCATCGACTTGATGGATAAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
* **
71923608 TGTAAGACCATGTCTGGGATGTGGCATCG
1 TGTAAGACCATGTTTGGGACATGGCATCG
71923637 GTATTATACC
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
46 2 0.02
47 76 0.70
48 2 0.02
49 2 0.02
50 26 0.24
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAG
Found at i:71928817 original size:47 final size:47
Alignment explanation
Indices: 71928761--71928903 Score: 232
Period size: 47 Copynumber: 3.0 Consensus size: 47
71928751 GTTGAATTTA
* * * *
71928761 AAGCTTGTTAACTTTTCTCTTAATATTTTCGGACAAGTTAGTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
71928808 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* *
71928855 AAGCTTGTTAAATTTGCTCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
71928902 AA
1 AA
71928904 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 90 1.00
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
Found at i:71929762 original size:45 final size:45
Alignment explanation
Indices: 71929698--71930053 Score: 640
Period size: 45 Copynumber: 7.9 Consensus size: 45
71929688 TATCGTACAG
71929698 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
71929743 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
71929788 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
71929833 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
71929878 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
71929923 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** *
71929968 TACTATTCGGGCCTTCAAGCCTAGCAGGCTATAATACCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
71930013 TACTATTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGT
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGT
71930054 AAAATGATAT
Statistics
Matches: 301, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 301 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:71941550 original size:16 final size:18
Alignment explanation
Indices: 71941519--71941551 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
71941509 AACTCGTCAC
71941519 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
71941537 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
71941552 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:71947556 original size:47 final size:47
Alignment explanation
Indices: 71947500--71947689 Score: 326
Period size: 47 Copynumber: 4.0 Consensus size: 47
71947490 GTTGAATTTA
71947500 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* * *
71947547 GAGCTTGTTAAATTTGCTCTTAATATTTCCAGACAATTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
*
71947594 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAATTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
* *
71947641 AAGCTTGTTAAATTTGCTCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
71947688 AA
1 AA
71947690 AGAAAATTTT
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGACAAGTTACTTAGTT
Found at i:71948552 original size:45 final size:45
Alignment explanation
Indices: 71948488--71948620 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
71948478 TATCGTACAG
* * *
71948488 TACTATTTGGGCCATTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
71948533 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
71948578 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
71948621 AATGATATCG
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:71949136 original size:16 final size:18
Alignment explanation
Indices: 71949105--71949137 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
71949095 AACTTGTCAC
71949105 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
71949123 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
71949138 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:71949414 original size:23 final size:23
Alignment explanation
Indices: 71949387--71949497 Score: 100
Period size: 23 Copynumber: 4.7 Consensus size: 23
71949377 GTGTTACAAA
* *
71949387 TAAGCTCT-ATTGAGCTAAAATAG
1 TAAGCTCTGA-TGAGCTGAAACAG
* *
71949410 TAAGCTTTGATGAGTTGAAACAG
1 TAAGCTCTGATGAGCTGAAACAG
*
71949433 TAAGCTCTGACGAGCTGAAACAG
1 TAAGCTCTGATGAGCTGAAACAG
* *
71949456 TAAGCTCTTACGAGCTGATATATCAG
1 TAAGCTCTGATGAGCTGA-A-A-CAG
71949482 TAAGCTCAT-ATGAGCT
1 TAAGCTC-TGATGAGCT
71949498 ACGGTGTGTC
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
23 54 0.73
24 2 0.03
25 1 0.01
26 16 0.22
27 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (23 bp):
TAAGCTCTGATGAGCTGAAACAG
Found at i:71951457 original size:27 final size:27
Alignment explanation
Indices: 71951394--71951519 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
71951384 GCTACCTGAA
* * *
71951394 CCCTCATGTGATAAAATAATGA-TTT-
1 CCCTTATGTGATAAAATGACGATTTTG
71951419 CCCTTATGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
** *
71951446 CCCTTATGTGATAAAATGAAAATTTTT
1 CCCTTATGTGATAAAATGACGATTTTG
*
71951473 CCCTTATGTGATAAAATAACGATTTTG
1 CCCTTATGTGATAAAATGACGATTTTG
*
71951500 CCCTTATGTGATAAGATGAC
1 CCCTTATGTGATAAAATGAC
71951520 CGAAATACCT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
25 19 0.22
26 3 0.03
27 65 0.75
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACGATTTTG
Found at i:71951481 original size:54 final size:54
Alignment explanation
Indices: 71951416--71951518 Score: 188
Period size: 54 Copynumber: 1.9 Consensus size: 54
71951406 AAAATAATGA
*
71951416 TTTCCCTTATGTGATAAAATGACGATTTTGCCCTTATGTGATAAAATGAAAATT
1 TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAAATGAAAATT
*
71951470 TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAGATGA
1 TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAAATGA
71951519 CCGAAATACC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (54 bp):
TTTCCCTTATGTGATAAAATAACGATTTTGCCCTTATGTGATAAAATGAAAATT
Found at i:71965953 original size:34 final size:34
Alignment explanation
Indices: 71965909--71965980 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
71965899 TCATTTCTTT
* ** *
71965909 TACTGTTACTGTAATGGGCTAAGGCCCACACTGA
1 TACTGATACTGTAATGGAATAAGGCCCACAATGA
71965943 TACTGATACTGTAATGGAATAAGGCCCACAATGA
1 TACTGATACTGTAATGGAATAAGGCCCACAATGA
71965977 TACT
1 TACT
71965981 AGACTATCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (34 bp):
TACTGATACTGTAATGGAATAAGGCCCACAATGA
Found at i:71975886 original size:18 final size:18
Alignment explanation
Indices: 71975865--71975900 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71975855 GTGTTAGTAG
71975865 TGATAATAGTTTTTATCT
1 TGATAATAGTTTTTATCT
71975883 TGATAATAGTTTTTATCT
1 TGATAATAGTTTTTATCT
71975901 AAGAAATCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (18 bp):
TGATAATAGTTTTTATCT
Found at i:71977526 original size:46 final size:44
Alignment explanation
Indices: 71977469--71977595 Score: 130
Period size: 47 Copynumber: 2.8 Consensus size: 44
71977459 TCATTTGTGT
71977469 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGA-
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATC-G--ACATTATGAC
* * * *
71977515 GAGCTAATGTAAGACCATGTCTGGGACAAGGCATCGACATTGTGAC
1 GAGCTAGTGTAA-AACATGTCTGGGAC-ATGCATCGACATTATGAC
* *
71977561 GAGTGCCAGTGTAAGACATGTCTGGGACATGCATC
1 GA--GCTAGTGTAAAACATGTCTGGGACATGCATC
71977596 AGCCTCGGGA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
45 8 0.12
46 19 0.28
47 26 0.39
48 14 0.21
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAAACATGTCTGGGACATGCATCGACATTATGAC
Found at i:71977540 original size:47 final size:44
Alignment explanation
Indices: 71977469--71977741 Score: 140
Period size: 46 Copynumber: 5.8 Consensus size: 44
71977459 TCATTTGTGT
*
71977469 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTATGAC
* * *
71977515 GAGCTAATGTAAGACCATGTCTGGGACAAGGCATCGACATTGTGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGAC-ATGCATCGACATTATGAC
* * ***
71977561 GAGTGCCAGTGTAAGACATGTCTGGGACATGCATC-AGCCTCGGGAC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CATTATGAC
* * ** * ** *
71977607 GTAAACCAGAATAAGACATGTCTGGGACATGCATCGGCTACGA-GAT
1 G--AGCTAGTGTAAGACATGTCTGGGACATGCATCGAC-ATTATGAC
* * * * *
71977653 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATTGGTACGGTTATGTGA-
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCA-TCG-AC-ATTA--TGAC
71977703 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACA
71977742 CTTTACCCAT
Statistics
Matches: 175, Mismatches: 35, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
44 9 0.05
45 22 0.13
46 62 0.35
47 27 0.15
48 21 0.12
49 2 0.01
50 30 0.17
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTATGAC
Found at i:71979786 original size:20 final size:20
Alignment explanation
Indices: 71979761--71979798 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71979751 GTAACATATA
71979761 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
71979781 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
71979799 TAGTTTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Done.