Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 221 of 290
Found at i:71982292 original size:36 final size:37
Alignment explanation
Indices: 71982220--71982297 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
71982210 TTATTACGAA
* *
71982220 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
71982257 GTCTTACCCGGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
71982293 GTCTT
1 GTCTT
71982298 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 24 0.63
37 14 0.37
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:71982575 original size:47 final size:47
Alignment explanation
Indices: 71982415--71982736 Score: 545
Period size: 47 Copynumber: 6.7 Consensus size: 47
71982405 GCCCTTCGGG
*
71982415 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
71982465 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
71982514 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
71982561 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
71982608 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
71982655 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
71982702 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
71982737 CTATCATTTC
Statistics
Matches: 263, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 177 0.67
49 82 0.31
50 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:71985645 original size:21 final size:22
Alignment explanation
Indices: 71985612--71985652 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
71985602 TTCATTTATG
*
71985612 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
71985633 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
71985653 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:71986130 original size:28 final size:28
Alignment explanation
Indices: 71986062--71986140 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
71986052 GAATCATTCG
*
71986062 ATATTTCGTACACTAAGT-CTCATTGTCA
1 ATATTTCGTACACTAAGTGC-CATTCTCA
* * *
71986090 ATATCTCGCACACAAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
* *
71986118 ATATTTCATACACTGAGTGCCAT
1 ATATTTCGTACACTAAGTGCCAT
71986141 ATTTGATTGC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.33
Consensus pattern (28 bp):
ATATTTCGTACACTAAGTGCCATTCTCA
Found at i:71991561 original size:28 final size:28
Alignment explanation
Indices: 71991493--71991573 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
71991483 ATCATAACTG
*
71991493 TAAATCTGATTGGGCCTAAT-GGCCGTA
1 TAAATATGATTGGGCCTAATGGGCCGTA
* * *
71991520 TGAATGTGATTTGGACCTAATGGGCC-TCA
1 TAAATATGA-TTGGGCCTAATGGGCCGT-A
71991549 TAAATATGATTGGGCCTAATGGGCC
1 TAAATATGATTGGGCCTAATGGGCC
71991574 ATATGGAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 7 0.16
28 26 0.58
29 12 0.27
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (28 bp):
TAAATATGATTGGGCCTAATGGGCCGTA
Found at i:71991587 original size:28 final size:27
Alignment explanation
Indices: 71991500--71991605 Score: 81
Period size: 28 Copynumber: 3.8 Consensus size: 27
71991490 CTGTAAATCT
* *
71991500 GATTGGGCCTAAT-GGCCGTATGAATGT
1 GATTGGGCCTAATGGGCCATATGAA-GA
* * *
71991527 GATTTGGACCTAATGGGCC-TCATAAATA
1 GA-TTGGGCCTAATGGGCCAT-ATGAAGA
71991555 TGATTGGGCCTAATGGGCCATATGGAAGA
1 -GATTGGGCCTAATGGGCCATAT-GAAGA
* * *
71991584 GATTAGGCCTATTGGGCTATAT
1 GATTGGGCCTAATGGGCCATAT
71991606 AAAGGTATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
27 2 0.03
28 47 0.75
29 14 0.22
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
GATTGGGCCTAATGGGCCATATGAAGA
Found at i:71991608 original size:56 final size:56
Alignment explanation
Indices: 71991493--71991600 Score: 139
Period size: 56 Copynumber: 1.9 Consensus size: 56
71991483 ATCATAACTG
* * * *
71991493 TAAATCTGATTGGGCCTAATGGCCGTATGAATGTGATTTGGACCTAATGGGCCTCA
1 TAAATATGATTGGGCCTAATGGCCATATGAATGAGATTAGGACCTAATGGGCCTCA
*
71991549 TAAATATGATTGGGCCTAATGGGCCATATGGAA-GAGATTAGG-CCTATTGGGC
1 TAAATATGATTGGGCCTAAT-GGCCATAT-GAATGAGATTAGGACCTAATGGGC
71991601 TATATAAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
56 28 0.62
57 14 0.31
58 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (56 bp):
TAAATATGATTGGGCCTAATGGCCATATGAATGAGATTAGGACCTAATGGGCCTCA
Found at i:72002717 original size:19 final size:19
Alignment explanation
Indices: 72002693--72002735 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
72002683 ATCGTGTCAC
72002693 ATTAAAGTGTTTTTCGTAA
1 ATTAAAGTGTTTTTCGTAA
72002712 ATTAAAGTGTTTTTCGTAA
1 ATTAAAGTGTTTTTCGTAA
72002731 ATTAA
1 ATTAA
72002736 CTTCTTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.47
Consensus pattern (19 bp):
ATTAAAGTGTTTTTCGTAA
Found at i:72003265 original size:27 final size:28
Alignment explanation
Indices: 72003235--72003293 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
72003225 ATTTAGTATT
* *
72003235 AGTAA-AGTCTGGGCCTTAGCCCTATAC
1 AGTAATAGTCTGGGCCTAAGCCCAATAC
* *
72003262 AGTAATAGTGTGGGCCTAAGCCCAATTC
1 AGTAATAGTCTGGGCCTAAGCCCAATAC
72003290 AGTA
1 AGTA
72003294 TCAGTAGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (28 bp):
AGTAATAGTCTGGGCCTAAGCCCAATAC
Found at i:72003505 original size:28 final size:28
Alignment explanation
Indices: 72003439--72003510 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
72003429 TAGTAGAACT
72003439 ACTAATAACAGTAA--ACATGGCAAAGCC
1 ACTAAT-ACAGTAATTACATGGCAAAGCC
* * *
72003466 ACCAA-AGTAGTAATTACGTGGCAAAGCC
1 ACTAATA-CAGTAATTACATGGCAAAGCC
*
72003494 ACTAATACAGTACTTAC
1 ACTAATACAGTAATTAC
72003511 TCCTAATTAG
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 4 0.11
28 24 0.69
29 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.19
Consensus pattern (28 bp):
ACTAATACAGTAATTACATGGCAAAGCC
Found at i:72006303 original size:49 final size:49
Alignment explanation
Indices: 72006231--72006417 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
72006221 GCTGAAGCTA
* *
72006231 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
* *
72006280 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAG
** * *
72006330 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
* * *
72006378 TTTTCGGGTACGCATAGTAGTCTGCACTTAGTACTACACA
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
72006418 TGCGACCTCA
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 39 0.33
50 41 0.35
51 35 0.30
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
Found at i:72006415 original size:101 final size:99
Alignment explanation
Indices: 72006242--72006428 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
72006232 CTGGTACGCA
* * *
72006242 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
72006307 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
72006341 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGTCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
72006405 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
72006429 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 31 0.40
101 42 0.55
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:72009472 original size:6 final size:6
Alignment explanation
Indices: 72009461--72009489 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
72009451 AAAATGTAAA
72009461 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
72009490 ATGGAGCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:72020170 original size:101 final size:98
Alignment explanation
Indices: 72019985--72020205 Score: 277
Period size: 100 Copynumber: 2.2 Consensus size: 98
72019975 TGTGAGGTCA
* *
72019985 CATGCGTAGTACTAAGTGCAGGCTACGACGTGTACCGGATAATTGGTCACATGTGTAGTACTAAG
1 CATGTGTAGTACTAAGTGCAGGCTACGACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAG
* *
72020050 TGCAAGCTACTGTGCGTACCCGATAACTTCG-AT
66 TGCAAGCTACTCTGCGTACCAGATAA-TTCGTAT
* * * *
72020083 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATTAGGTCACGTGTGTAGTACT
1 CA--TGTGTAGTACTAAGTGCAGGCTACGACGTGTACCAGATAATT-GGTCACATGTGTAGTACT
* *
72020148 -AGATGCAAGCTACTACT-TGTACCAGATAATTGGTAT
63 AAG-TGCAAGCTACT-CTGCGTACCAGATAATTCGTAT
72020184 CATGTGTAGTACTAAGTGCAGG
1 CATGTGTAGTACTAAGTGCAGG
72020206 TTATTATGCG
Statistics
Matches: 107, Mismatches: 10, Indels: 11
0.84 0.08 0.09
Matches are distributed among these distances:
98 2 0.02
99 20 0.19
100 42 0.39
101 42 0.39
102 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (98 bp):
CATGTGTAGTACTAAGTGCAGGCTACGACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAG
TGCAAGCTACTCTGCGTACCAGATAATTCGTAT
Found at i:72020219 original size:49 final size:49
Alignment explanation
Indices: 72019980--72020224 Score: 253
Period size: 49 Copynumber: 4.9 Consensus size: 49
72019970 TCTATTGTGA
* * * *
72019980 GGTCACATGCGTAGTACTAAGTGCAGGCTACGACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
72020029 GGTCACATGTGTAGTACTAAGTGCAAGCTACTGTGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * *
72020079 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
72020129 AGGTCACGTGTGTAGTACT-AGATGCAAGCTACTACT-TGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAG-TGCAGGCTACTA-TGTGTACCAGATAATT
* * *
72020179 GGT-ATCATGTGTAGTACTAAGTGCAGGTTATTATGCGTACCAGATA
1 GGTCA-CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
72020225 GCTTTGGCTA
Statistics
Matches: 162, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.01
49 76 0.47
50 46 0.28
51 38 0.23
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:72027304 original size:49 final size:50
Alignment explanation
Indices: 72027223--72027456 Score: 197
Period size: 49 Copynumber: 4.7 Consensus size: 50
72027213 ATCTATTGTG
* * * *
72027223 AGGTCACGT-TGTAGTACTTAGTGCGGGCTACTATGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * * * **
72027272 -GGTCGCATGTGTAGTACTAAGTTCAAGCTACTATGCGTACCCAATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT
*** * * * * *
72027322 CTATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-AGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA-ATT
* ** *
72027372 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGCACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
** *
72027422 -GGTTGCATATGTAGTACTAAGTGCAGGCTACTATG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
72027457 CGTGTAACAC
Statistics
Matches: 144, Mismatches: 36, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
48 6 0.04
49 59 0.41
50 45 0.31
51 34 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:72036735 original size:49 final size:50
Alignment explanation
Indices: 72036662--72036897 Score: 278
Period size: 49 Copynumber: 4.7 Consensus size: 50
72036652 ATTGTGAGGT
* *
72036662 CATGTTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-GGTCG
1 CATG-TGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCA
* * * * * *
72036712 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTAGGTCA
* * * * **
72036763 CGTGTGTAGTACAAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCA
* * *
72036813 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCA
*
72036862 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
72036898 AGAGAGCCTT
Statistics
Matches: 156, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
49 70 0.45
50 50 0.32
51 36 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGGTCA
Found at i:72036848 original size:101 final size:98
Alignment explanation
Indices: 72036662--72036900 Score: 316
Period size: 101 Copynumber: 2.4 Consensus size: 98
72036652 ATTGTGAGGT
* *
72036662 CATGTTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACTAA
1 CATG-TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACTAA
*
72036727 GTGTAGGCTACTATGCGTACCCGATAACTTCGATCA
65 GTGTAGGCTACTACGCGTACCCGATAA-TT-GATCA
* * ** *
72036763 CGTGTGTAGTACAAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACATGTGTAGTACTAA
* * * *
72036828 GTGTAGGCTACTACGTGTACCGGATAATTGGTCG
65 GTGTAGGCTACTACGCGTACCCGATAATTGATCA
* *
72036862 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA
72036901 GAGCCTTGTC
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 38 0.31
100 38 0.31
101 45 0.37
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACTAAG
TGTAGGCTACTACGCGTACCCGATAATTGATCA
Found at i:72050694 original size:20 final size:19
Alignment explanation
Indices: 72050658--72050709 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
72050648 AAAATCATAC
*
72050658 AAAAAAAGAATATATATAG
1 AAAAAAAGAATAAATATAG
* *
72050677 AAAAAAAGATTGAAATATAC
1 AAAAAAAGAAT-AAATATAG
72050697 ATAAAAAATGAAT
1 A-AAAAAA-GAAT
72050710 TTTTTTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.38
20 7 0.27
21 6 0.23
22 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.21
Consensus pattern (19 bp):
AAAAAAAGAATAAATATAG
Found at i:72056861 original size:39 final size:40
Alignment explanation
Indices: 72056704--72056928 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
72056694 GCTACTCGTT
* *
72056704 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
72056744 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
72056784 CAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
72056824 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * * *
72056863 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
72056904 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72056929 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 114 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:72056912 original size:119 final size:120
Alignment explanation
Indices: 72056704--72056928 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
72056694 GCTACTCGTT
* * *
72056704 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
72056769 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCGCA
* * **
72056824 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
72056886 AGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 AGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
72056929 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTATTAACTCGCA
Found at i:72066731 original size:17 final size:17
Alignment explanation
Indices: 72066709--72066758 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
72066699 TGAATCCTCC
72066709 TATTTTTTATTTATTCT
1 TATTTTTTATTTATTCT
*
72066726 TATTTTTATTTTTATT-T
1 TATTTTT-TATTTATTCT
72066743 TA-TTTTTATTT-TTCT
1 TATTTTTTATTTATTCT
72066758 T
1 T
72066759 TTGATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 2 0.07
15 6 0.21
16 4 0.14
17 10 0.34
18 7 0.24
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (17 bp):
TATTTTTTATTTATTCT
Found at i:72066734 original size:6 final size:6
Alignment explanation
Indices: 72066709--72066767 Score: 68
Period size: 6 Copynumber: 10.2 Consensus size: 6
72066699 TGAATCCTCC
* *
72066709 TATTTT T-TATT TATTCT TATTTT TATTTT TA-TTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* *
72066755 TCTTTT GATTTT T
1 TATTTT TATTTT T
72066768 TTTCAGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
5 9 0.21
6 34 0.79
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:72066744 original size:23 final size:23
Alignment explanation
Indices: 72066712--72066766 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
72066702 ATCCTCCTAT
72066712 TTTTTA-TTTATTCTTATTTTTA
1 TTTTTATTTTATTCTTATTTTTA
* *
72066734 TTTTTATTTTATTTTTATTTTTC
1 TTTTTATTTTATTCTTATTTTTA
*
72066757 TTTTGATTTT
1 TTTTTATTTT
72066767 TTTTCAGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 6 0.21
23 23 0.79
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTTATTTTATTCTTATTTTTA
Found at i:72073943 original size:40 final size:40
Alignment explanation
Indices: 72073888--72074110 Score: 281
Period size: 40 Copynumber: 5.5 Consensus size: 40
72073878 TATTCGGATG
72073888 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72073928 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
72073971 CTACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
72074011 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
72074051 ATATCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
72074090 ATATCC-GGCT-AGATCCCGAAG
1 ATATCCGGGCTAAG-TCCCGAAG
72074111 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
37 2 0.01
38 4 0.02
39 31 0.19
40 87 0.54
41 1 0.01
43 36 0.22
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:72074031 original size:83 final size:80
Alignment explanation
Indices: 72073892--72074110 Score: 277
Period size: 83 Copynumber: 2.7 Consensus size: 80
72073882 CGGATGATAT
* **
72073892 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
72073957 TGCGAGTAGTTG-CTCTAC
66 TGC---TAG-TGACTATAC
*
72073975 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
72074040 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* *
72074055 CCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCT-AGATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAG-TCCCGAAG
72074111 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 8, Indels: 11
0.87 0.06 0.08
Matches are distributed among these distances:
77 2 0.02
78 12 0.10
79 28 0.22
80 19 0.15
83 64 0.51
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:72077408 original size:26 final size:25
Alignment explanation
Indices: 72077344--72077413 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
72077334 CAATCTGACC
* *
72077344 CATAGCTTGTGTGAGCAGGCCCATTT
1 CATAGC-TGTGTGAGCAAGACCATTT
* *
72077370 CACAACTGATGTGAGCAAGACCATTT
1 CATAGCTG-TGTGAGCAAGACCATTT
72077396 CATAGCTCGTGTGAGCAA
1 CATAGCT-GTGTGAGCAA
72077414 ACATGTATCT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.06
26 33 0.92
27 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
CATAGCTGTGTGAGCAAGACCATTT
Found at i:72082590 original size:15 final size:15
Alignment explanation
Indices: 72082570--72082599 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72082560 CAACACTTGT
72082570 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
72082585 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
72082600 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:72097302 original size:15 final size:15
Alignment explanation
Indices: 72097282--72097315 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
72097272 ACATCCATAA
72097282 TCATGCAATGACATG
1 TCATGCAATGACATG
72097297 TCATGCAATGACATG
1 TCATGCAATGACATG
72097312 TCAT
1 TCAT
72097316 CCAAAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (15 bp):
TCATGCAATGACATG
Found at i:72098405 original size:51 final size:49
Alignment explanation
Indices: 72098287--72098482 Score: 257
Period size: 49 Copynumber: 4.0 Consensus size: 49
72098277 GTAGACAAGG
* **
72098287 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGTGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
72098336 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTG-ACCAA
* ** ***
72098386 GTTATCGGGTACGTATAGTAGCCTGCACTTAGTACTACACATACGACCAA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
*
72098436 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
72098483 TCACAATAGA
Statistics
Matches: 124, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 79 0.64
50 8 0.06
51 37 0.30
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:72098434 original size:100 final size:100
Alignment explanation
Indices: 72098286--72098480 Score: 336
Period size: 100 Copynumber: 1.9 Consensus size: 100
72098276 TGTAGACAAG
* * **
72098286 GTTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGTGACCAATTATCCGGTACACGT
1 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGT
72098351 AGTAGCCTGCACTTAGTACTACACACGTGAACGAA
66 AGTAGCCTGCACTTAGTACTACACACGTGAACGAA
* *
72098386 GTTATCGGGTACGTATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCTGGTACACGT
1 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGT
72098451 AGTAGCCTGCACTTAGTACTACACACGTGA
66 AGTAGCCTGCACTTAGTACTACACACGTGA
72098481 CCTCACAATA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (100 bp):
GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACGT
AGTAGCCTGCACTTAGTACTACACACGTGAACGAA
Found at i:72098759 original size:27 final size:28
Alignment explanation
Indices: 72098729--72098785 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
72098719 TCATACAACC
*
72098729 CATGTAATAATAATTTAACATTC-ATTT
1 CATGTAACAATAATTTAACATTCAATTT
**
72098756 CATGTAACAATAATTTGCCATTCAATTT
1 CATGTAACAATAATTTAACATTCAATTT
72098784 CA
1 CA
72098786 CATGACACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.40
Consensus pattern (28 bp):
CATGTAACAATAATTTAACATTCAATTT
Found at i:72100135 original size:24 final size:25
Alignment explanation
Indices: 72100100--72100154 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
72100090 TAAGCTCATT
*
72100100 GAGCT-AGAAACAATAAGCTCTGAC
1 GAGCTGAGAAACAATAAACTCTGAC
* *
72100124 GAGCTGAG-AACAGTAAACTCTTAC
1 GAGCTGAGAAACAATAAACTCTGAC
*
72100148 AAGCTGA
1 GAGCTGA
72100155 TTTATATCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (25 bp):
GAGCTGAGAAACAATAAACTCTGAC
Found at i:72105815 original size:99 final size:100
Alignment explanation
Indices: 72105655--72105886 Score: 306
Period size: 99 Copynumber: 2.3 Consensus size: 100
72105645 CTGGTATGCC
* * * **
72105655 TAGTAGCCTGCACATAGTACTATACATGCGACCAATTATCAGATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCAGATACACGTAGTAGCCTGCACTTA
*
72105720 GTACTACACACGTG-GC-CAATTATCCGGTACACG
66 GTACTACACACGTGAGCACAATTATCCGGTACACA
* *
72105753 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCAGATACACGTAGTAGCCTGCACTT
* * * ** *
72105818 AGTACTACACACGTGATCACAGTTTTTGGGTACGCA
65 AGTACTACACACGTGAGCACAATTATCCGGTACACA
*
72105854 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
72105887 TCACAATAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 29 0.25
99 43 0.37
100 1 0.01
101 42 0.37
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCAGATACACGTAGTAGCCTGCACTTA
GTACTACACACGTGAGCACAATTATCCGGTACACA
Found at i:72105822 original size:50 final size:49
Alignment explanation
Indices: 72105655--72105879 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 49
72105645 CTGGTATGCC
* * * *
72105655 TAGTAGCCTGCACATAGTACTATACATGCGACCAATTATCAGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGATACACG
* * *
72105704 TAGTAGCCTGCACTTAGTACTACACACGTGGCCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGATACACG
** *
72105753 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCAGATACACG
* * ** * * *
72105803 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCAGATACACG
72105854 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
72105880 TGCGACCTCA
Statistics
Matches: 152, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 74 0.49
50 43 0.28
51 34 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGATACACG
Found at i:72110208 original size:23 final size:22
Alignment explanation
Indices: 72110157--72110201 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
72110147 CCTTAATAGG
72110157 CGAGGAAAAATCCCGTTTGAAC
1 CGAGGAAAAATCCCGTTTGAAC
72110179 CGAGGAAAAATCCCGTTTGAAC
1 CGAGGAAAAATCCCGTTTGAAC
72110201 C
1 C
72110202 TTAGGAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (22 bp):
CGAGGAAAAATCCCGTTTGAAC
Found at i:72112500 original size:35 final size:35
Alignment explanation
Indices: 72112384--72112486 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 35
72112374 CTCAAGGTTC
* *
72112384 ATTATATCATCACATATGGCCAAATATACAAGTAT
1 ATTATAACATCACATGTGGCCAAATATACAAGTAT
* * * * *
72112419 ATTAAAACATCACATGTAGTCAAATATTCAAGTTT
1 ATTATAACATCACATGTGGCCAAATATACAAGTAT
*
72112454 ATTATAACATCACATGTGGCCAAAGATACAAGT
1 ATTATAACATCACATGTGGCCAAATATACAAGT
72112487 CCAATATATC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 56 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (35 bp):
ATTATAACATCACATGTGGCCAAATATACAAGTAT
Found at i:72114186 original size:13 final size:13
Alignment explanation
Indices: 72114168--72114194 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72114158 GAAGTTGTCG
72114168 CACACGGGCGTGT
1 CACACGGGCGTGT
72114181 CACACGGGCGTGT
1 CACACGGGCGTGT
72114194 C
1 C
72114195 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:72124452 original size:27 final size:27
Alignment explanation
Indices: 72124377--72124532 Score: 129
Period size: 27 Copynumber: 5.8 Consensus size: 27
72124367 ATACTTTAGT
* * **
72124377 TTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
72124404 TTACCAAAATACCCCT-AGTTTGTAAAA
1 TTACCAAAATACCCCTGA-TTTGTAAAA
*
72124431 TTACCAAAATACCCCTGATTTGTGAAA
1 TTACCAAAATACCCCTGATTTGTAAAA
** **
72124458 TTACTGAAATA-CCCTCGACCTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
*** *
72124485 TTATTGAAATA-CCCTCGACTTGTAAAA
1 TTACCAAAATACCCCT-GATTTGTAAAA
* *
72124512 TTATCAAATTACCCCTGATTT
1 TTACCAAAATACCCCTGATTT
72124533 ACAGAATTAT
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.04
27 100 0.92
28 5 0.05
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
TTACCAAAATACCCCTGATTTGTAAAA
Found at i:72124540 original size:27 final size:28
Alignment explanation
Indices: 72124508--72124581 Score: 82
Period size: 27 Copynumber: 2.7 Consensus size: 28
72124498 CTCGACTTGT
72124508 AAAATTATCAAATTACCCCT-GATTTAC
1 AAAATTATCAAATTACCCCTCGATTTAC
* **
72124535 AGAATTATCATTTTA-CCCTCGATTTAC
1 AAAATTATCAAATTACCCCTCGATTTAC
*
72124562 AAAATTA-CTAAAATACCCCT
1 AAAATTATC-AAATTACCCCT
72124582 ATAGGGTAGA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 5 0.14
27 28 0.76
28 4 0.11
ACGTcount: A:0.39, C:0.23, G:0.04, T:0.34
Consensus pattern (28 bp):
AAAATTATCAAATTACCCCTCGATTTAC
Found at i:72124594 original size:27 final size:27
Alignment explanation
Indices: 72124564--72124758 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
72124554 CGATTTACAA
* *
72124564 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
72124591 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
72124618 AAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
72124645 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
72124672 AAATACCGAAAAACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
72124699 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
72124726 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
72124753 AATTAC
1 AATTAC
72124759 CATTTTACCC
Statistics
Matches: 149, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
27 148 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:72125122 original size:26 final size:27
Alignment explanation
Indices: 72125093--72125152 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
72125083 CCACATATAT
*
72125093 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
72125119 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
72125146 ATATCTG
1 ATATCTG
72125153 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:72125302 original size:6 final size:6
Alignment explanation
Indices: 72125271--72125349 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
72125261 TTGCATTCAC
* * *
72125271 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG AATCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
72125320 -TCACCTG ATTCTA ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
72125350 AGCTCTGATA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 2 0.04
6 47 0.82
7 6 0.11
8 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:72125306 original size:31 final size:31
Alignment explanation
Indices: 72125271--72125349 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
72125261 TTGCATTCAC
* * *
72125271 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* *
72125302 ATTCTGATTCTGAATCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
72125333 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
72125350 AGCTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:72125356 original size:18 final size:18
Alignment explanation
Indices: 72125324--72125358 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72125314 AATCTGTCAC
*
72125324 CTGATTCTAATTCTGATT
1 CTGATTCTAACTCTGATT
*
72125342 CTGATTCTAGCTCTGAT
1 CTGATTCTAACTCTGAT
72125359 AATGTTTCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (18 bp):
CTGATTCTAACTCTGATT
Found at i:72127334 original size:27 final size:27
Alignment explanation
Indices: 72127303--72127505 Score: 264
Period size: 27 Copynumber: 7.5 Consensus size: 27
72127293 ATACTTTAGT
* * **
72127303 TTACCAAAATACCCTTAGATTACAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
*
72127330 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
* ** * *
72127357 TTACTAAAATACCTTTTGTTTATAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
72127384 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
72127411 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
*
72127438 TTATCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
**
72127465 TTACCAAAATACCCCT-GATTTGTGTAA
1 TTACCAAAATACCCCTAG-TTTGTAAAA
*
72127492 TTACTAAAATACCC
1 TTACCAAAATACCC
72127506 TCGACCTGTA
Statistics
Matches: 155, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.01
27 154 0.99
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (27 bp):
TTACCAAAATACCCCTAGTTTGTAAAA
Found at i:72127516 original size:81 final size:81
Alignment explanation
Indices: 72127303--72127566 Score: 243
Period size: 81 Copynumber: 3.3 Consensus size: 81
72127293 ATACTTTAGT
* ** **
72127303 TTACCAAAATACCCTTAGA-TTACAAAATTACCAAAATACCCCTG-GTTTGTAAAATTA-CTAAA
1 TTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCC-GAGCCTGTAAAATTATC-AAA
** * *
72127365 ATACCTTTTGTTTATAAAA
63 ATACCCCTAGTTTGTAAAA
* **
72127384 TTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAAT
1 TTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAAT
72127448 ACCCCTAGTTTGTAAAA
65 ACCCCTAGTTTGTAAAA
** * **
72127465 TTACCAAAATACCCCTGATTTGTGTAATTACTAAAATACCCTCGA-CCTGTAAAATTATTGAAAT
1 TTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAAT
* *
72127529 A-CCCTCGACTTGTAAAA
65 ACCCCTAG-TTTGTAAAA
**
72127546 TTACCAATGTACCCCTGATTT
1 TTACCAAAATACCCCTGATTT
72127567 ACAGAATTAC
Statistics
Matches: 156, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
79 1 0.01
80 5 0.03
81 146 0.94
82 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (81 bp):
TTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATA
CCCCTAGTTTGTAAAA
Found at i:72127559 original size:27 final size:27
Alignment explanation
Indices: 72127303--72127552 Score: 163
Period size: 27 Copynumber: 9.3 Consensus size: 27
72127293 ATACTTTAGT
* **
72127303 TTACCAAAATACCCTTAGA-TTACAAAA
1 TTACCAAAATACCC-TCGACTTGTAAAA
**
72127330 TTACCAAAATACCC-CTGGTTTGTAAAA
1 TTACCAAAATACCCTC-GACTTGTAAAA
* * * * *
72127357 TTACTAAAATACCTTTTG-TTTATAAAA
1 TTACCAAAATACC-CTCGACTTGTAAAA
* *
72127384 TTACCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCTCGA-CTTGTAAAA
* *
72127411 TTACCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCTCGA-CTTGTAAAA
* * *
72127438 TTATCAAAATACCC-CTAGTTTGTAAAA
1 TTACCAAAATACCCTCGA-CTTGTAAAA
* **
72127465 TTACCAAAATACCC-CTGATTTGTGTAA
1 TTACCAAAATACCCTC-GACTTGTAAAA
* *
72127492 TTACTAAAATACCCTCGACCTGTAAAA
1 TTACCAAAATACCCTCGACTTGTAAAA
***
72127519 TTATTGAAATACCCTCGACTTGTAAAA
1 TTACCAAAATACCCTCGACTTGTAAAA
72127546 TTACCAA
1 TTACCAA
72127553 TGTACCCCTG
Statistics
Matches: 186, Mismatches: 29, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
26 1 0.01
27 182 0.98
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
TTACCAAAATACCCTCGACTTGTAAAA
Found at i:72127612 original size:27 final size:25
Alignment explanation
Indices: 72127326--72127614 Score: 130
Period size: 27 Copynumber: 10.7 Consensus size: 25
72127316 CTTAGATTAC
*
72127326 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATT-CCAAAATACCCC-GATTTGT
* ** *
72127353 AAAATTACTAAAATACCTTTTG-TTTAT
1 AAAATT-CCAAAATACC--CCGATTTGT
*
72127380 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATT-CCAAAATACCCCGA-TTTGT
*
72127407 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATT-CCAAAATACCCCGA-TTTGT
* *
72127434 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATT-CCAAAATACCCCGA-TTTGT
72127461 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATT-CCAAAATACCCC-GATTTGT
** * **
72127488 GTAATTACTAAAATACCCTCGACCTGT
1 AAAATT-CCAAAATACCC-CGATTTGT
*** *
72127515 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATT-CCAAAATACCC-CGATTTGT
** **
72127542 AAAATTACCAATGTACCCCTGATTTAC
1 AAAATT-CCAAAATACCCC-GATTTGT
* * ** *
72127569 AGAATTACAATTTTACCCTCGATTTAT
1 AAAATTCCAA-AATACCC-CGATTTGT
72127596 AAAATTCCTAAAATACCCC
1 AAAATTCC-AAAATACCCC
72127615 TGTAGGGTAG
Statistics
Matches: 214, Mismatches: 38, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.02
27 203 0.95
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (25 bp):
AAAATTCCAAAATACCCCGATTTGT
Found at i:72127753 original size:53 final size:54
Alignment explanation
Indices: 72127603--72127760 Score: 246
Period size: 54 Copynumber: 2.9 Consensus size: 54
72127593 TATAAAATTC
* *
72127603 CTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATA
1 CTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATA
** *
72127657 CCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATA
1 CTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATA
* *
72127711 CTAAAATA-CCCAGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAA
1 CTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAA
72127761 TTACCGAGAT
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
53 39 0.41
54 55 0.59
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.23
Consensus pattern (54 bp):
CTAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATA
Found at i:72127772 original size:27 final size:27
Alignment explanation
Indices: 72127606--72127791 Score: 223
Period size: 27 Copynumber: 7.0 Consensus size: 27
72127596 AAAATTCCTA
72127606 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
72127633 AAATACCCTTGTAGGGTAAAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
72127660 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
72127687 AAATACCCTTGTAGGGTAGAAATACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
72127714 AAATA-CCCAGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
72127740 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
72127767 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
72127792 ATTTTACCCC
Statistics
Matches: 138, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
26 39 0.28
27 99 0.72
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:72127783 original size:53 final size:53
Alignment explanation
Indices: 72127606--72127790 Score: 244
Period size: 53 Copynumber: 3.5 Consensus size: 53
72127596 AAAATTCCTA
* *
72127606 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATACCG
1 AAATA-CCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCG
* **
72127660 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATACTA
1 AAATA-CCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCG
* * *
72127714 AAATACCCAGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCG
* * * *
72127767 AGATACCTTGTGGGGTAAAATTAC
1 AAATACCCTGTAGGGTAGAATTAC
72127791 CATTTTACCC
Statistics
Matches: 115, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 61 0.53
54 54 0.47
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (53 bp):
AAATACCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCG
Found at i:72128551 original size:55 final size:53
Alignment explanation
Indices: 72128425--72128621 Score: 151
Period size: 55 Copynumber: 3.7 Consensus size: 53
72128415 AGGGTTTAAG
* * * * * * ** * *
72128425 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAC
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAA-CTACATAAGGCAAA
* * *
72128479 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACATTAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTACA-TAAGGCAAA
* * * * * * * * *
72128534 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGGAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
**
72128587 GATACCACATAAGACCATGTCAAGACATGGCAATG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATG
72128622 GTTAGTTTAA
Statistics
Matches: 113, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
53 37 0.33
54 37 0.33
55 39 0.35
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
Found at i:72128616 original size:53 final size:54
Alignment explanation
Indices: 72128425--72128628 Score: 155
Period size: 53 Copynumber: 3.8 Consensus size: 54
72128415 AGGGTTTAAG
* * * *
72128425 GATACCA-AGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT--TTACAAGGCAAC
1 GATACCACA-TAAGACCATGTCAAGACATGGCAATGGTAAGTTCATT--AAGGCAAA
* * ** * * * *
72128479 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACATTAAGGCAAA
1 GATACCACATAAGACCATGTCAAGACATGGCAATGGT-AAGTTCATTAAGGCAAA
* ** * * * * *
72128534 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCA-TAAGGGAAG
1 GATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTTCATTAAGGCAAA
*
72128587 GATACCACATAAGACCATGTCAAGACATGGCAATGGTTAGTT
1 GATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTT
72128629 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
53 43 0.36
54 34 0.29
55 40 0.34
57 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
GATACCACATAAGACCATGTCAAGACATGGCAATGGTAAGTTCATTAAGGCAAA
Found at i:72136959 original size:49 final size:49
Alignment explanation
Indices: 72136885--72137064 Score: 245
Period size: 49 Copynumber: 3.7 Consensus size: 49
72136875 TGAGTTCACG
* * *
72136885 TGTGTAGTATTAAGTGTAGGTTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
** * *
72136934 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGG-TGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GGATAATT-GGTCGCA
*
72136984 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
* *
72137033 TGTGTAGTACTAAGTGCAAGCTACTATGTGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA
72137065 CCAGATAGCT
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
49 71 0.62
50 43 0.38
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
Found at i:72137056 original size:99 final size:99
Alignment explanation
Indices: 72136880--72137064 Score: 316
Period size: 99 Copynumber: 1.9 Consensus size: 99
72136870 TATTGTGAGT
* * * *
72136880 TCACGTGTGTAGTATTAAGTGTAGGTTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAATTGGTCGCATGTGTAGTACT
*
72136945 AAGTGCAGGCTACTACGTGTATCAGGTGGTTAGG
66 AAGTGCAAGCTACTACGTGTATCAGGTGGTTAGG
72136979 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAATTGGTCGCATGTGTAGTACT
*
72137044 AAGTGCAAGCTACTATGTGTA
66 AAGTGCAAGCTACTACGTGTA
72137065 CCAGATAGCT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAAGCTACTACGTGTATCAGGTGGTTAGG
Found at i:72142165 original size:28 final size:28
Alignment explanation
Indices: 72142134--72142217 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
72142124 AACTTTGATC
72142134 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
72142162 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
72142184 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
72142212 ACGTGT
1 ACGTGT
72142218 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:72142201 original size:50 final size:49
Alignment explanation
Indices: 72142030--72142261 Score: 295
Period size: 49 Copynumber: 4.7 Consensus size: 49
72142020 TCTATTGTGA
* *
72142030 GGTCACGTGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
72142079 GGTCGCATGTGTTGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATAA--TT
* * * **
72142130 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
72142179 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
72142229 GGTCTCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
72142262 TGCGTACTAG
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
49 71 0.46
50 46 0.30
51 38 0.25
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:72151345 original size:6 final size:6
Alignment explanation
Indices: 72151336--72151398 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
72151326 TTGCATTCAC
* * *
72151336 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
72151385 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
72151399 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 3 0.07
6 38 0.83
7 4 0.09
8 1 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:72157847 original size:47 final size:48
Alignment explanation
Indices: 72157788--72157897 Score: 159
Period size: 48 Copynumber: 2.3 Consensus size: 48
72157778 CAGTAATGCG
* *
72157788 GATAAACTGCCACATAATCAAA-TTGTGGACAAGCCACCAATTTTGTA
1 GATATACTGCCACATAATCAAATTTGTGGACAAGCCACCAATTTTGCA
* *
72157835 GATATACTGCCACATAATCAAATTTGTGGACAGGCCACCACTTTTGCA
1 GATATACTGCCACATAATCAAATTTGTGGACAAGCCACCAATTTTGCA
* *
72157883 AATATACTACCACAT
1 GATATACTGCCACAT
72157898 TCTTCCACCT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
47 21 0.38
48 35 0.62
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (48 bp):
GATATACTGCCACATAATCAAATTTGTGGACAAGCCACCAATTTTGCA
Found at i:72159998 original size:8 final size:8
Alignment explanation
Indices: 72159985--72160021 Score: 74
Period size: 8 Copynumber: 4.6 Consensus size: 8
72159975 AGTAGTTAAG
72159985 TGGAGTGT
1 TGGAGTGT
72159993 TGGAGTGT
1 TGGAGTGT
72160001 TGGAGTGT
1 TGGAGTGT
72160009 TGGAGTGT
1 TGGAGTGT
72160017 TGGAG
1 TGGAG
72160022 GTTCTTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.51, T:0.35
Consensus pattern (8 bp):
TGGAGTGT
Found at i:72160266 original size:3 final size:3
Alignment explanation
Indices: 72160258--72160292 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
72160248 TTTTGACGTT
*
72160258 TTC TTC TTC TTT TTC TTC TTC TTC TTC TCTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC T
72160293 ATCAATTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:72168636 original size:13 final size:13
Alignment explanation
Indices: 72168618--72168642 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72168608 GAACTATGAA
72168618 ATTAATGAGTACT
1 ATTAATGAGTACT
72168631 ATTAATGAGTAC
1 ATTAATGAGTAC
72168643 AGAAGAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
ATTAATGAGTACT
Found at i:72174985 original size:34 final size:34
Alignment explanation
Indices: 72174945--72175010 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
72174935 TCAACCTTTC
*
72174945 TCACCTAACTTCCAAATGCATAATCTTACCATTT
1 TCACCTAACTTCCAAATACATAATCTTACCATTT
*
72174979 TCACCTAACTTCCAGATACATAATCTTACCAT
1 TCACCTAACTTCCAAATACATAATCTTACCAT
72175011 CTTTTTACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33
Consensus pattern (34 bp):
TCACCTAACTTCCAAATACATAATCTTACCATTT
Found at i:72178553 original size:22 final size:23
Alignment explanation
Indices: 72178499--72178550 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
72178489 TATAAAACCT
72178499 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
* *
72178521 AATAAAAAGTAGTCTTAAAGTAG
1 AATAAAAAGTAGTCTTAAAGAAA
72178544 AATAAAA
1 AATAAAA
72178551 GTAAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.63, C:0.04, G:0.12, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:72184688 original size:13 final size:13
Alignment explanation
Indices: 72184670--72184696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72184660 GCTCGACAGG
72184670 GACACGCCCGTGT
1 GACACGCCCGTGT
72184683 GACACGCCCGTGT
1 GACACGCCCGTGT
72184696 G
1 G
72184697 CGATTATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:72185301 original size:43 final size:43
Alignment explanation
Indices: 72185189--72185358 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 43
72185179 ATAAAGGTCG
* * * *
72185189 TACAATG-CAATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* * * * * *
72185230 TATCGATGCCACTATCCTAGACAGGGTCTTACACGAAATCACAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* * * * *
72185274 TACGATGCCAATGTCTCAGGCATGGTCTTACGCGTAATCATAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
* *
72185317 TACAATGCCAATGTCCCAGACATGGTATTACATGTAATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
72185359 TCTCGATAAG
Statistics
Matches: 102, Mismatches: 24, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 93 0.91
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAA
Found at i:72199415 original size:40 final size:40
Alignment explanation
Indices: 72199094--72199401 Score: 521
Period size: 40 Copynumber: 7.7 Consensus size: 40
72199084 TATTCGGATG
* *
72199094 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72199134 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72199173 ATGACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72199213 ATAACCGGGCTAAGTTCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72199253 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72199293 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72199333 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72199373 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
72199402 AGCAAGTAGC
Statistics
Matches: 251, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
39 35 0.14
40 216 0.86
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72207391 original size:40 final size:40
Alignment explanation
Indices: 72207282--72207625 Score: 565
Period size: 40 Copynumber: 8.7 Consensus size: 40
72207272 TATTCGGATG
* *
72207282 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72207322 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72207361 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72207401 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
72207441 ATAACCGGGCTAAATCTCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72207481 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72207520 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72207560 ATAACCGGGCTAAGTCTCGAAGGTATTTGTGCGAGTTAC-
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72207599 -T-ACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
72207626 AGCAAGTAGC
Statistics
Matches: 286, Mismatches: 14, Indels: 11
0.92 0.05 0.04
Matches are distributed among these distances:
37 24 0.08
38 1 0.00
39 71 0.25
40 190 0.66
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72207493 original size:119 final size:119
Alignment explanation
Indices: 72207282--72207625 Score: 561
Period size: 119 Copynumber: 2.9 Consensus size: 119
72207272 TATTCGGATG
* * * * *
72207282 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCT-AAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAATCTCGAAGGC
72207345 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACTATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72207401 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAATCTCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAATCTCGAAGGCA
*
72207466 TTTGTGCAAGTTACTATAACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 TTTGTGCGAGTTACTATAACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
72207520 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCTCGAAGGTA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAATCTCGAAGGCA
*
72207585 TTTGTGCGAGTTAC--TACCGGGCTAAGTCCCGAAGGCATTTG
66 TTTGTGCGAGTTACTATAACGGGCTAAGTCCCGAAGGCATTTG
72207626 AGCAAGTAGC
Statistics
Matches: 213, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
117 26 0.12
119 157 0.74
120 30 0.14
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAATCTCGAAGGCA
TTTGTGCGAGTTACTATAACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72207571 original size:159 final size:158
Alignment explanation
Indices: 72207282--72207658 Score: 582
Period size: 159 Copynumber: 2.4 Consensus size: 158
72207272 TATTCGGATG
* * **
72207282 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACGGGCTAAGTCCCGAAGGCA
72207346 TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGC
65 TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGC
72207411 TAAGTCCCGAAGGCATTTGTGCGAGTTAC
130 TAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
72207440 TATAACCGGGCTAAATCTCGAAGGCATTTGTGCAAGTTACTATAACGGGCTAAGTCCCGAAGGCA
1 -ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACGGGCTAAGTCCCGAAGGCA
72207505 TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGC
65 TTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGC
* *
72207570 TAAGTCTCGAAGGTATTTGTGCGAGTTAC
130 TAAGTCCCGAAGGCATTTGTGCGAGTTAC
* * * * *
72207599 -T-ACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCCGGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATAACGGGCTAAGTCCCGAAGG
72207659 TACTTGGTTT
Statistics
Matches: 201, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
155 2 0.01
156 49 0.24
157 1 0.00
158 11 0.05
159 138 0.69
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (158 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCT
AAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:72213292 original size:50 final size:50
Alignment explanation
Indices: 72213233--72213333 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
72213223 AAACTCCTTT
72213233 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCTAAG
1 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCTAAG
72213283 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCTAAG
1 TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCTAAG
72213333 T
1 T
72213334 GTGGAAAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.39
Consensus pattern (50 bp):
TATTGATAAGTCACTCATATGCAAACATTATTTCAAAATTTTAATCTAAG
Found at i:72214789 original size:25 final size:25
Alignment explanation
Indices: 72214752--72214803 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
72214742 AAGGAATTCG
72214752 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
72214777 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
72214802 CA
1 CA
72214804 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:72215023 original size:40 final size:40
Alignment explanation
Indices: 72214979--72215360 Score: 332
Period size: 40 Copynumber: 9.6 Consensus size: 40
72214969 CCAGCATGAT
* * * * *
72214979 TGCTCTTCGGGACCTAGCTCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
72215019 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
72215059 TGCTCTTTGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
72215099 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
72215139 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
72215179 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCA-CACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACT-AGCACGAA
* ** * * *
72215220 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* * * * *
72215260 TGC-CTTCGGG-TTTAGCCCGGAATTA-GTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCACGAA
* **
72215299 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
72215339 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
72215361 CATCATTCGA
Statistics
Matches: 291, Mismatches: 40, Indels: 22
0.82 0.11 0.06
Matches are distributed among these distances:
38 4 0.01
39 28 0.10
40 238 0.82
41 20 0.07
42 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:72217261 original size:37 final size:37
Alignment explanation
Indices: 72217211--72217289 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
72217201 TTATTACGAA
* * *
72217211 GTCTTACCCGGACATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
72217248 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
72217285 GTCTT
1 GTCTT
72217290 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:72217581 original size:49 final size:47
Alignment explanation
Indices: 72217408--72217845 Score: 718
Period size: 47 Copynumber: 9.2 Consensus size: 47
72217398 CCCTTCGGGA
* * * * * *
72217408 CTTATCACATTTATACAC-TTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72217454 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72217501 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72217548 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72217597 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72217643 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72217690 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72217739 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72217788 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72217835 CTTATCACATA
1 CTTATCACATA
72217846 GAATCCTAAA
Statistics
Matches: 373, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
46 61 0.16
47 170 0.46
49 142 0.38
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72217586 original size:96 final size:96
Alignment explanation
Indices: 72217408--72217845 Score: 726
Period size: 96 Copynumber: 4.6 Consensus size: 96
72217398 CCCTTCGGGA
* * * * * * * *
72217408 CTTATCACATTTATACAC-TTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72217470 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72217501 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72217566 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72217597 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
72217659 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72217690 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
72217755 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
72217788 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
72217846 GAATCCTAAA
Statistics
Matches: 327, Mismatches: 10, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
93 64 0.20
94 29 0.09
95 46 0.14
96 142 0.43
98 46 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72224029 original size:43 final size:43
Alignment explanation
Indices: 72223862--72224034 Score: 169
Period size: 43 Copynumber: 4.0 Consensus size: 43
72223852 ATATCATACA
* * *
72223862 ATGCCAAC-GTCCCAGACGTGGTTTTACATGTAATCACATGTCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACG-AATCACATATCG
72223905 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCACA-ATTACG
1 ATGCCAACTGTCCCAGAC-GTGGTCTTACACGAATCACATA-T-CG
* * * *
72223948 ATGCCGA-TGTCCTAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* *
72223991 ATGCCAACT-TCCTAGACGTGGTCTTACACGAGAGCACATATCG
1 ATGCCAACTGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
72224034 A
1 A
72224035 AAATCCTATG
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 11 0.10
43 87 0.79
44 11 0.10
45 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:72226549 original size:38 final size:38
Alignment explanation
Indices: 72226455--72226616 Score: 272
Period size: 38 Copynumber: 4.3 Consensus size: 38
72226445 AGGCCCGAAT
* *
72226455 ATAT-TTCCAGCACGTAGCCTGCGGACCTCAGGTCTGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
*
72226492 ATATGTTTCCAACACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATG-TTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
*
72226531 ATATGTTCCAGCACGTAGCCTGCAGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
72226569 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
1 ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
72226607 ATATGTTCCA
1 ATATGTTCCA
72226617 AATATCATGC
Statistics
Matches: 117, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
37 4 0.03
38 78 0.67
39 35 0.30
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.23
Consensus pattern (38 bp):
ATATGTTCCAGCACGTAGCCTGCGGACCTCAAGTCCGG
Found at i:72231173 original size:48 final size:48
Alignment explanation
Indices: 72231068--72231382 Score: 235
Period size: 48 Copynumber: 6.6 Consensus size: 48
72231058 CATGTGTGCT
* * * *
72231068 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACAT--TATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATATGAGATGAGAG-C
* *
72231114 AATGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGACGAGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATATGAGATGAGAGC
* * * * * *
72231161 TAGTGTATGACCATGTCTAGGACATGGCATCGGCCT-CGAGATGTGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAGCATATGAGATGAGAG-C
* * *
72231210 AGTGTAAGACCATGTCTGGGACATGGCATCAAC-TATGAGATGTG-TC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATATGAGATGAGAGC
* * *
72231256 AGTGTAAGACCATGTTTGGGACATGGCATCGGGACGGATATGTGA-GAGA-C
1 AGTGTAAGACCATGTCTGGGACATGGCATC---A-GCATATGAGATGAGAGC
*
72231306 AGTGTAAGACCATGTCTGGGACATGGCATCAAC-T-T--GATGTATGAGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATATGAGATG-A-GAGC
* * *
72231352 TAGTGTAAGACCATGTTTGGGGCATGACATC
1 -AGTGTAAGACCATGTCTGGGACATGGCATC
72231383 GACATCCTAC
Statistics
Matches: 220, Mismatches: 31, Indels: 35
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 2 0.01
45 3 0.01
46 40 0.18
47 45 0.20
48 87 0.40
49 2 0.01
50 32 0.15
51 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATATGAGATGAGAGC
Found at i:72231209 original size:96 final size:94
Alignment explanation
Indices: 72231065--72231383 Score: 355
Period size: 96 Copynumber: 3.4 Consensus size: 94
72231055 TGACATGTGT
* *
72231065 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCAC-ATTATGAGAGCCAATGTAAGACCAT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC-CGA-TATGTGAGCCAGTGTAAGACCAT
*
72231127 GTCTGGGACATGGCATCAGC-ATTGAGACGAG
64 GTCTGGGACATGGCATCAACTA-TGAGACGAG
* * * *
72231158 AGCTAGTGTATGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTGAGCCAGTGTAAGACCAT
1 -GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCC-CGATATGTGAGCCAGTGTAAGACCAT
* *
72231223 GTCTGGGACATGGCATCAACTATGAGATGTG
64 GTCTGGGACATGGCATCAACTATGAGACGAG
* * * *
72231254 TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGGACGGATATGTGAGAGACAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGCCCGATATGT--GAGCCAGTGTAAGACCA
*
72231318 TGTCTGGGACATGGCATCAACT-TGATGTATGA-
63 TGTCTGGGACATGGCATCAACTATGA-G-ACGAG
* *
72231350 GCTAGTGTAAGACCATGTTTGGGGCATGACATCG
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCG
72231384 ACATCCTACC
Statistics
Matches: 193, Mismatches: 22, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
94 44 0.23
95 19 0.10
96 97 0.50
97 33 0.17
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCCGATATGTGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCAACTATGAGACGAG
Found at i:72237351 original size:67 final size:66
Alignment explanation
Indices: 72237210--72237395 Score: 218
Period size: 67 Copynumber: 2.8 Consensus size: 66
72237200 CATCATGTGT
* * *
72237210 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCACATGGGTGATACT-A-TGTGTACACCA
1 ACAAGAGAGCTACAAG--A-TAT-ATGTAGCTAGGTCACATGGGTGGTACTAAGTGAGGACACCA
72237273 TGTAG
62 TGTAG
* * *
72237278 ACAAGAGAGCTACCAGATATATGTAGCTAGGTCACATGCGTGGTTCTAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAAGATATATGTAGCTAGGTCACATGGGTGGTACTAAGTG-AGGACACCATGT
72237343 AG
65 AG
* *
72237345 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTG
1 ACAAGAGAGCTACAAGATATA-TGTAGCTAGGTCACATGGGTGGTACTAAGTG
72237396 TTCACCATGT
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
64 24 0.23
65 4 0.04
66 28 0.27
67 31 0.30
68 17 0.16
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACAAGATATATGTAGCTAGGTCACATGGGTGGTACTAAGTGAGGACACCATGTA
G
Found at i:72242768 original size:39 final size:39
Alignment explanation
Indices: 72242720--72242900 Score: 143
Period size: 39 Copynumber: 4.7 Consensus size: 39
72242710 CCTGATCACG
* *
72242720 CTTACGTGCCCCTATCGTACTTTGGTACCCCTGATTGCA
1 CTTAAGTGCCCCTATCGTACTTTGGTACCCCTAATTGCA
* * ** * *
72242759 CTTAAGTGCCCTTGTCGATACTTCAGTA-CCCTGATCGCA
1 CTTAAGTGCCCCTATCG-TACTTTGGTACCCCTAATTGCA
* * * *
72242798 CTTATGTGCCACTATTGTACTTTGGTACCCC-AATTACA
1 CTTAAGTGCCCCTATCGTACTTTGGTACCCCTAATTGCA
* * * * * * *
72242836 CTTACGTACCCCTGTCATACTTCGGTACCCTTAATTGCG
1 CTTAAGTGCCCCTATCGTACTTTGGTACCCCTAATTGCA
*
72242875 CTTACA-TGCCCCTATTGTACTTTGGT
1 CTTA-AGTGCCCCTATCGTACTTTGGT
72242901 GCTCTTTATA
Statistics
Matches: 106, Mismatches: 32, Indels: 8
0.73 0.22 0.05
Matches are distributed among these distances:
38 35 0.33
39 63 0.59
40 8 0.08
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (39 bp):
CTTAAGTGCCCCTATCGTACTTTGGTACCCCTAATTGCA
Found at i:72242894 original size:77 final size:78
Alignment explanation
Indices: 72242718--72242900 Score: 226
Period size: 77 Copynumber: 2.4 Consensus size: 78
72242708 CTCCTGATCA
* * * * *
72242718 CGCTTACGTGCCCCTATCGTACTTTGGTACCCCTGATTGCACTTAAGTGCCCTTGTCGATACTTC
1 CGCTTACGTGCCCCTATTGTACTTTGGTACCCCTAATTACACTTAAGTACCCCTGTCGATACTTC
*
72242783 AGTACCCTGATCG
66 AGTACCCTAATCG
* * * *
72242796 CACTTATGTGCCACTATTGTACTTTGGTACCCC-AATTACACTTACGTACCCCTGTC-ATACTTC
1 CGCTTACGTGCCCCTATTGTACTTTGGTACCCCTAATTACACTTAAGTACCCCTGTCGATACTTC
* *
72242859 GGTACCCTTAATTG
66 AGTACCC-TAATCG
*
72242873 CGCTTACATGCCCCTATTGTACTTTGGT
1 CGCTTACGTGCCCCTATTGTACTTTGGT
72242901 GCTCTTTATA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
76 13 0.15
77 46 0.52
78 29 0.33
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (78 bp):
CGCTTACGTGCCCCTATTGTACTTTGGTACCCCTAATTACACTTAAGTACCCCTGTCGATACTTC
AGTACCCTAATCG
Found at i:72246392 original size:30 final size:30
Alignment explanation
Indices: 72246358--72246454 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
72246348 TAAACTAAAA
*
72246358 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
72246388 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
72246418 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
72246447 ATGAGCTA
1 -TGAGCTA
72246455 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:72247480 original size:81 final size:81
Alignment explanation
Indices: 72247345--72247533 Score: 263
Period size: 81 Copynumber: 2.3 Consensus size: 81
72247335 CTTATAAGAT
* *
72247345 AAAATGACTATTTTGCCCTTATTTTATAAAATGACAATTTTGCCCTTATGAGGTAAAATGACGGT
1 AAAATGACTATTTTGCCCTTATTTGATAAAATGACAATTTTGCCCGTATGAGGTAAAATGACGGT
* *
72247410 TTTGCCTTTATGGGGA
66 TTTGCCCTTATGAGGA
* * *
72247426 AAAATGACTATTTTGCCCTTATTTGATAAAATGACAATTTTTCTCGTATGAGGTAAAATGATGGT
1 AAAATGACTATTTTGCCCTTATTTGATAAAATGACAATTTTGCCCGTATGAGGTAAAATGACGGT
* *
72247491 TTTTCCCTTATGAGGT
66 TTTGCCCTTATGAGGA
**
72247507 AAAATGACTGCTTTGCCCCTT-TTTGAT
1 AAAATGACTATTTTG-CCCTTATTTGAT
72247534 GTATGTATAT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 91 0.95
82 5 0.05
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (81 bp):
AAAATGACTATTTTGCCCTTATTTGATAAAATGACAATTTTGCCCGTATGAGGTAAAATGACGGT
TTTGCCCTTATGAGGA
Found at i:72247482 original size:27 final size:27
Alignment explanation
Indices: 72247333--72247514 Score: 157
Period size: 27 Copynumber: 6.7 Consensus size: 27
72247323 CATACTTGAA
* * *
72247333 CCCTTATAAGATAAAATGACTATTTTG
1 CCCTTATGAGGTAAAATGACAATTTTG
****
72247360 CCCTTATTTTATAAAATGACAATTTTG
1 CCCTTATGAGGTAAAATGACAATTTTG
**
72247387 CCCTTATGAGGTAAAATGACGGTTTTG
1 CCCTTATGAGGTAAAATGACAATTTTG
* * * *
72247414 CCTTTATGGGGAAAAATGACTATTTTG
1 CCCTTATGAGGTAAAATGACAATTTTG
** * *
72247441 CCCTTATTTGATAAAATGACAATTTTT
1 CCCTTATGAGGTAAAATGACAATTTTG
* * *** *
72247468 CTCGTATGAGGTAAAATGATGGTTTTT
1 CCCTTATGAGGTAAAATGACAATTTTG
72247495 CCCTTATGAGGTAAAATGAC
1 CCCTTATGAGGTAAAATGAC
72247515 TGCTTTGCCC
Statistics
Matches: 122, Mismatches: 33, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (27 bp):
CCCTTATGAGGTAAAATGACAATTTTG
Found at i:72247882 original size:18 final size:18
Alignment explanation
Indices: 72247856--72247928 Score: 85
Period size: 18 Copynumber: 4.1 Consensus size: 18
72247846 GGATTGGCAT
* *
72247856 ACTGTTTACTGTTACTTC
1 ACTGATTACTGTTACTGC
72247874 ACTGATTACTGTTACTGC
1 ACTGATTACTGTTACTGC
* *
72247892 ATTGATTTCTGTTACTGC
1 ACTGATTACTGTTACTGC
*
72247910 AGT-ATTTACTGTTACTGC
1 ACTGA-TTACTGTTACTGC
72247928 A
1 A
72247929 ATGGGCTAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
17 1 0.02
18 47 0.98
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (18 bp):
ACTGATTACTGTTACTGC
Found at i:72250728 original size:79 final size:81
Alignment explanation
Indices: 72250592--72250776 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
72250582 TTGAATGATG
* *
72250592 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
72250656 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72250671 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72250733 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
72250751 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72250777 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:72250790 original size:40 final size:40
Alignment explanation
Indices: 72250593--72250776 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
72250583 TGAATGATGT
* * * *
72250593 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72250633 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
72250673 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
72250711 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72250752 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72250777 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72250798 original size:79 final size:79
Alignment explanation
Indices: 72250645--72250809 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
72250635 GGACTAAGAT
* * **
72250645 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
72250710 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
72250724 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
72250787 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
72250803 CCGAAGG
1 CCGAAGG
72250810 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:72258737 original size:40 final size:40
Alignment explanation
Indices: 72258541--72258723 Score: 198
Period size: 39 Copynumber: 4.6 Consensus size: 40
72258531 TGAATGATGT
* * * *
72258541 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72258581 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
72258621 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
72258659 TCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72258699 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72258724 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 6 0.05
39 55 0.45
40 53 0.43
41 8 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72258741 original size:79 final size:78
Alignment explanation
Indices: 72258593--72258756 Score: 206
Period size: 79 Copynumber: 2.1 Consensus size: 78
72258583 GGACTAAGAT
* * **
72258593 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
72258658 ATCCGGTTAAGTC
66 ATCCGGTTAAATC
* *
72258671 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
72258734 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
72258750 CCGAAGG
1 CCGAAGG
72258757 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
77 2 0.03
78 33 0.45
79 39 0.53
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGTTAAATC
Found at i:72263390 original size:43 final size:43
Alignment explanation
Indices: 72263335--72263491 Score: 269
Period size: 43 Copynumber: 3.7 Consensus size: 43
72263325 GTGCTGGTAT
72263335 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATG
* *
72263378 TGTATTTGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATG
* * *
72263421 TGTATTCGGGACTTCGTGCCTAGCAGGCTTCGTGTCAGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATG
72263464 TGTATTCGGGCCTTCGTGCCTAGCAGGC
1 TGTATTCGGGCCTTCGTGCCTAGCAGGC
72263492 ATAATGCCGG
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
TGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATG
Found at i:72263436 original size:86 final size:85
Alignment explanation
Indices: 72263316--72263504 Score: 290
Period size: 86 Copynumber: 2.2 Consensus size: 85
72263306 GATAAATCCC
* * *
72263316 GCAGGCCTAGTGCTGGT-ATTGTATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
1 GCAGGCATAGTGCCGGTGATTGTATTCGGGACTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
*
72263380 TATTTGGGCCTTCGTGCCTA
66 TATTCGGGCCTTCGTGCCTA
* * *
72263400 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGACTTCGTGCCTAGCAGGCTTCGTGTCAGTGATGT
1 GCAGGCATAGTGCCGGTGAT-TGTATTCGGGACTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGT
72263465 GTATTCGGGCCTTCGTGCCTA
65 GTATTCGGGCCTTCGTGCCTA
*
72263486 GCAGGCATAATGCCGGTGA
1 GCAGGCATAGTGCCGGTGA
72263505 AATGGTATGT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
84 15 0.16
85 2 0.02
86 78 0.82
ACGTcount: A:0.14, C:0.22, G:0.33, T:0.30
Consensus pattern (85 bp):
GCAGGCATAGTGCCGGTGATTGTATTCGGGACTTCGTGCCTAGCAGGCTTAGTGCCAGTGATGTG
TATTCGGGCCTTCGTGCCTA
Found at i:72265027 original size:20 final size:20
Alignment explanation
Indices: 72264984--72265028 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
72264974 GCATAACGGG
*
72264984 GGCACCAAAGTGCAATCAGG
1 GGCACCAAAGTGCAATCAGA
72265004 GGCACCAAAGTGCAAAT-AGA
1 GGCACCAAAGTGC-AATCAGA
72265024 GGCAC
1 GGCAC
72265029 AAATGTCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.38, C:0.24, G:0.29, T:0.09
Consensus pattern (20 bp):
GGCACCAAAGTGCAATCAGA
Found at i:72274673 original size:26 final size:23
Alignment explanation
Indices: 72274637--72274689 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 23
72274627 GTTTTATTTT
72274637 AATTAACCTTATTTACTAAATATCAA
1 AATTAACCTTA-TTACT-AAT-TCAA
72274663 AATTAACCTTATTACTAATTCAA
1 AATTAACCTTATTACTAATTCAA
72274686 AATT
1 AATT
72274690 TCAATAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 8 0.30
24 3 0.11
25 5 0.19
26 11 0.41
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (23 bp):
AATTAACCTTATTACTAATTCAA
Found at i:72278273 original size:35 final size:34
Alignment explanation
Indices: 72278215--72278286 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 34
72278205 ATCTATCATC
* *
72278215 TCATCCATGAATCACATTACCAAACATTTCACAT
1 TCATCCATAAATCACATTACCAAACAATTCACAT
* *
72278249 TCATGCCATAAATCACATTTCCAAACAATTCAGAT
1 TCAT-CCATAAATCACATTACCAAACAATTCACAT
72278284 TCA
1 TCA
72278287 CCAAGCATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.39, C:0.28, G:0.04, T:0.29
Consensus pattern (34 bp):
TCATCCATAAATCACATTACCAAACAATTCACAT
Found at i:72279395 original size:43 final size:42
Alignment explanation
Indices: 72279327--72279490 Score: 195
Period size: 42 Copynumber: 3.9 Consensus size: 42
72279317 TACCTTGCCA
** * * *
72279327 ATGCCATATCTTAGATATGATCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
72279369 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* * *
72279412 ATGCCATATCCTAGATATGGTCTTACACGAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
72279454 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
72279491 GTAACCCTAA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 70 0.67
43 34 0.33
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:72281524 original size:111 final size:111
Alignment explanation
Indices: 72281330--72281557 Score: 420
Period size: 111 Copynumber: 2.1 Consensus size: 111
72281320 ATAACATACA
* *
72281330 AACTTACCTCAGATGTTAAAACGGTGAATCTAGTTGATTAGTCGATAACTTTATCTTTTCCCCAA
1 AACTTACCTCAGATGTTAAAACGGTGAATCTAGTCGATTAGTAGATAACTTTATCTTTTCCCCAA
72281395 TCCAAATCTATATTTCTCCTTTCTTGATCTAAATATATTTAAAATT
66 TCCAAATCTATATTTCTCCTTTCTTGATCTAAATATATTTAAAATT
*
72281441 AACTTACCTCAGATGTTAAAACGGTGAATCTAGTCGATTAGTAGATAACTTTATCTTTTCCTCAA
1 AACTTACCTCAGATGTTAAAACGGTGAATCTAGTCGATTAGTAGATAACTTTATCTTTTCCCCAA
*
72281506 TCCAAATCTGTATTTCTCCTTTCTTGATCTAAATATATTTAAAATT
66 TCCAAATCTATATTTCTCCTTTCTTGATCTAAATATATTTAAAATT
72281552 AACTTA
1 AACTTA
72281558 TTTAATCATA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 113 1.00
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.40
Consensus pattern (111 bp):
AACTTACCTCAGATGTTAAAACGGTGAATCTAGTCGATTAGTAGATAACTTTATCTTTTCCCCAA
TCCAAATCTATATTTCTCCTTTCTTGATCTAAATATATTTAAAATT
Found at i:72286719 original size:42 final size:41
Alignment explanation
Indices: 72286617--72286736 Score: 116
Period size: 43 Copynumber: 2.9 Consensus size: 41
72286607 GTCTGTGACA
* * *
72286617 TCATGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCATGTAAGACCATGTCTGGGACACAGGCATCGATT-ACATT
* **
72286659 TACATATAAGACCATGTCTGGGACATTGGCATCGTATCT-CATT
1 T-CATGTAAGACCATGTCTGGGACACAGGCATCG-AT-TACATT
* * *
72286702 TCATGTAAGACCCTGTCTGGGACAGATGCATCGAT
1 TCATGTAAGACCATGTCTGGGACACAGGCATCGAT
72286737 ATTGAATTAC
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.44
43 31 0.48
44 2 0.03
45 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (41 bp):
TCATGTAAGACCATGTCTGGGACACAGGCATCGATTACATT
Found at i:72286775 original size:85 final size:85
Alignment explanation
Indices: 72286617--72286775 Score: 187
Period size: 85 Copynumber: 1.9 Consensus size: 85
72286607 GTCTGTGACA
* * ** *
72286617 TCATGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
1 TCATGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCTAGGA
*
72286682 CATTGGCATCGTATCTCATT
66 CATCGGCATCGTATCTCATT
* * *
72286702 TCATGTAAGACCCTGTCTGGGACAGATGCATCGATATTGA-A-TTACATGTAAGACCACATCTAG
1 TCATGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACATCTAG
**
72286765 GATGTCGGCAT
64 GACATCGGCAT
72286776 TGTACTTGAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
85 55 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (85 bp):
TCATGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCTAGGA
CATCGGCATCGTATCTCATT
Found at i:72291415 original size:11 final size:11
Alignment explanation
Indices: 72291379--72291434 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
72291369 CATGGAATGT
72291379 ATGATATGCAC
1 ATGATATGCAC
* *
72291390 ATGACATG--T
1 ATGATATGCAC
72291399 ATGATATGCAC
1 ATGATATGCAC
*
72291410 ATGATATG--T
1 ATGATATGCAC
72291419 ATGATATGCAC
1 ATGATATGCAC
72291430 ATGAT
1 ATGAT
72291435 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72291434 original size:20 final size:20
Alignment explanation
Indices: 72291375--72291434 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
72291365 TAAACATGGA
*
72291375 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAT
72291395 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAT
72291415 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAT
72291435 GTATTCATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAT
Found at i:72291511 original size:24 final size:24
Alignment explanation
Indices: 72291484--72291661 Score: 257
Period size: 24 Copynumber: 7.4 Consensus size: 24
72291474 GAGGAAGTGC
72291484 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
72291508 AAAAGGGCTTATGCCCAAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* * *
72291532 AAAACGGCGTATGCCCCGGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72291556 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
72291580 AAAAGGGCTTGTGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
72291604 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
72291628 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
72291652 AAAAGAGGCT
1 AAAAG-GGCT
72291662 AGGCCTCTAG
Statistics
Matches: 136, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 132 0.97
25 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:72293533 original size:43 final size:43
Alignment explanation
Indices: 72293438--72293556 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
72293428 ATCGAGATAT
* * *
72293438 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGGATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGCATTAA
*
72293481 GATTACGTGTAAAACCATGTCTGGGACATTGGCA-T-CATTAA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGCATTAA
* * *
72293522 TCGATTTCGTGTAAGACCCTGTCTGGGACAGTGGC
1 --GATTACGTGTAAGACCATGTCTGGGACATTGGC
72293557 CTCAATTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 4 0.06
42 1 0.02
43 61 0.92
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGCATTAA
Found at i:72309280 original size:28 final size:29
Alignment explanation
Indices: 72309249--72309303 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
72309239 CTGAAATTCT
72309249 GATAT-CATGGCCCAAAGCCAAATCAGGC
1 GATATGCATGGCCCAAAGCCAAATCAGGC
*
72309277 GATATGCATGGCCCGAAGCCAAATCAG
1 GATATGCATGGCCCAAAGCCAAATCAG
72309304 TATATCTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.35, C:0.27, G:0.24, T:0.15
Consensus pattern (29 bp):
GATATGCATGGCCCAAAGCCAAATCAGGC
Found at i:72310687 original size:22 final size:23
Alignment explanation
Indices: 72310638--72310685 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
72310628 CTTAACAGTG
72310638 TTTGAAAAATATTCTATGGCAAC
1 TTTGAAAAATATTCTATGGCAAC
72310661 TTTGAAAAATATTCTATGGCAAC
1 TTTGAAAAATATTCTATGGCAAC
72310684 TT
1 TT
72310686 GATCTTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (23 bp):
TTTGAAAAATATTCTATGGCAAC
Found at i:72312070 original size:20 final size:20
Alignment explanation
Indices: 72312045--72312096 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
72312035 ATCAAAGTGC
*
72312045 AAATGATTTTAACCATGTCA
1 AAATGATTTTAACCAAGTCA
* *
72312065 AAATGATTTCAATCAAGTCA
1 AAATGATTTTAACCAAGTCA
* *
72312085 ACATCATTTTAA
1 AAATGATTTTAA
72312097 AATGATTTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (20 bp):
AAATGATTTTAACCAAGTCA
Found at i:72315334 original size:45 final size:45
Alignment explanation
Indices: 72315272--72315396 Score: 146
Period size: 45 Copynumber: 2.8 Consensus size: 45
72315262 TAGGACTCTG
*
72315272 ATATGTGTTTTCA-TGTAAGACCACGTCTGGGACATTGGCATCGAT
1 ATATGTGTTTT-AGTGTAAGACCACGTCTGGGACATAGGCATCGAT
* *
72315317 ATATGTGTTTTAGTGTAAGACCACATCTAGGACATAGGCATCGAT
1 ATATGTGTTTTAGTGTAAGACCACGTCTGGGACATAGGCATCGAT
* * * * *
72315362 ATACGT-TATTTCGAGTAAGACCATGGCTGGGACAT
1 ATATGTGT-TTTAGTGTAAGACCACGTCTGGGACAT
72315397 CAGAATCGTA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 2 0.03
45 66 0.97
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (45 bp):
ATATGTGTTTTAGTGTAAGACCACGTCTGGGACATAGGCATCGAT
Found at i:72316868 original size:7 final size:7
Alignment explanation
Indices: 72316856--72316887 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
72316846 TTTTTGTAGG
72316856 TATTTTT
1 TATTTTT
72316863 TATTTTT
1 TATTTTT
72316870 TA-TTTT
1 TATTTTT
72316876 TA-TTTT
1 TATTTTT
72316882 TATTTT
1 TATTTT
72316888 ATAAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:72317820 original size:23 final size:23
Alignment explanation
Indices: 72317744--72317831 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 23
72317734 TACTTGATTA
*
72317744 GAATACGACACA-AAAGTG-CTT
1 GAATACGACACACAAAGTGCCTG
* * *
72317765 AAAAACGACACACGAAGTGCCT-
1 GAATACGACACACAAAGTGCCTG
*
72317787 GATATA-G-CACACAAGGTGCCTG
1 GA-ATACGACACACAAAGTGCCTG
*
72317809 GAATACGACACATAAAGTGCCTG
1 GAATACGACACACAAAGTGCCTG
72317832 ATCAGTAAAG
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
21 25 0.48
22 10 0.19
23 17 0.33
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.16
Consensus pattern (23 bp):
GAATACGACACACAAAGTGCCTG
Found at i:72393018 original size:19 final size:19
Alignment explanation
Indices: 72392982--72393020 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72392972 TTTTCATCAT
* *
72392982 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
72393001 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
72393020 A
1 A
72393021 AATAATTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:72393525 original size:28 final size:27
Alignment explanation
Indices: 72393483--72393572 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
72393473 TTGACAGAGT
72393483 CACCAGATACAGATATTTTGTGGC-GGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGG-GC
** *
72393512 CACCAGAACAGATATACGTGACAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
**
72393539 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGAT-ATTTGTGGCAGGGC
72393567 CACCAG
1 CACCAG
72393573 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 20 0.39
28 24 0.47
29 7 0.14
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:72393728 original size:28 final size:28
Alignment explanation
Indices: 72393678--72393742 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
72393668 AAATTAACCC
* *
72393678 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATATTGCATACA
*
72393706 TAGGGGTATAATGGTAATATTGCATACA
1 TAGGGGTATAAAGGTAATATTGCATACA
72393734 TAGGGGTAT
1 TAGGGGTAT
72393743 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATATTGCATACA
Found at i:72404880 original size:40 final size:40
Alignment explanation
Indices: 72404796--72404979 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
72404786 TTGAATGCTG
* * * *
72404796 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
72404835 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
72404876 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
72404916 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
72404956 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72404980 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:72404933 original size:80 final size:81
Alignment explanation
Indices: 72404796--72404976 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
72404786 TTGAATGCTG
* * *
72404796 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
72404860 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
72404876 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
72404937 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
72404956 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
72404977 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:72405033 original size:39 final size:39
Alignment explanation
Indices: 72404796--72405038 Score: 122
Period size: 40 Copynumber: 6.1 Consensus size: 39
72404786 TTGAATGCTG
* ** *
72404796 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGAAC-GAGTGACTATA
* * ** * *
72404836 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTA-A
1 TCCGGGCTAAG-TCCCGAAGGCA-TTGAACGAGTGACTATA
* * **
72404875 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGAT-ACTA-A
1 -TCCGGGCTAAGTCCCGAAGG-CATTGAACGAG-TGACTATA
* ** ** *
72404915 TTCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 -TCCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACT-ATA
* * *
72404956 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATA
*
72404995 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATA
72405034 TCCGG
1 TCCGG
72405039 TTAAATTCCG
Statistics
Matches: 166, Mismatches: 24, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
38 20 0.12
39 27 0.16
40 110 0.66
41 9 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATA
Found at i:72412772 original size:40 final size:40
Alignment explanation
Indices: 72412688--72412871 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
72412678 TTGAATGCTG
* * * *
72412688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
72412727 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
72412768 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
72412808 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
72412848 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72412872 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:72412825 original size:80 final size:81
Alignment explanation
Indices: 72412688--72412868 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
72412678 TTGAATGCTG
* * *
72412688 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
72412752 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
72412768 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
72412829 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
72412848 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
72412869 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Done.