Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 223 of 290
Found at i:72653886 original size:40 final size:40
Alignment explanation
Indices: 72653816--72653993 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
72653806 AAGCCAAGTA
* * * *
72653816 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
72653855 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72653895 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
72653935 CCTTCGGGACTTAGCCCGGGA-CTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
72653975 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72653994 TTATCATCCA
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
39 14 0.11
40 107 0.86
41 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72658403 original size:43 final size:43
Alignment explanation
Indices: 72658341--72658436 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 43
72658331 TCAAGACCAC
*
72658341 CAAAAG-AGAAGAAGAAGAAGTATTCAGCTTAGCCACTTGATA
1 CAAAAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATA
* *
72658383 CAAAAGAAGAAGAAGAAGAAGTATTCGGCTTAGTCACTAGATA
1 CAAAAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATA
*
72658426 TAAAAGAAGAA
1 CAAAAGAAGAA
72658437 AAAGTTGTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 6 0.12
43 43 0.88
ACGTcount: A:0.49, C:0.11, G:0.22, T:0.18
Consensus pattern (43 bp):
CAAAAGAAGAAGAAGAAGAAGTATTCAGCTTAGCCACTAGATA
Found at i:72666256 original size:46 final size:46
Alignment explanation
Indices: 72666192--72666298 Score: 178
Period size: 46 Copynumber: 2.3 Consensus size: 46
72666182 AGAACCAACA
*
72666192 AAGAAGAAGAAGAAGAAGTATTCATCTTACCCACTAGATACAAAAG
1 AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
* *
72666238 AAGAAGAAGAAGAAGAAGTATTTAGCTTAGCCACTAGATACAAAAG
1 AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
*
72666284 AAGAAGAAAAAGAAG
1 AAGAAGAAGAAGAAG
72666299 TCGTGAAGGA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.53, C:0.11, G:0.21, T:0.15
Consensus pattern (46 bp):
AAGAAGAAGAAGAAGAAGTATTCAGCTTACCCACTAGATACAAAAG
Found at i:72671122 original size:27 final size:26
Alignment explanation
Indices: 72671092--72671145 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
72671082 CTGCTCTTAT
* *
72671092 TAAAAATTAGAAAAATTTTATAAAAAA
1 TAAAAAATA-AAAAATTTTAGAAAAAA
*
72671119 TAAAAAATAATAAATTTTAGAAAAAA
1 TAAAAAATAAAAAATTTTAGAAAAAA
72671145 T
1 T
72671146 TATTAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (26 bp):
TAAAAAATAAAAAATTTTAGAAAAAA
Found at i:72671163 original size:20 final size:20
Alignment explanation
Indices: 72671117--72671166 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
72671107 TTTTATAAAA
*
72671117 AATAAAAAATAATAAATTTT
1 AATAAAAATTAATAAATTTT
*
72671137 AGA-AAAAATTATTAAATTTT
1 A-ATAAAAATTAATAAATTTT
72671157 AATAAAAATT
1 AATAAAAATT
72671167 TAAGAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AATAAAAATTAATAAATTTT
Found at i:72677852 original size:93 final size:93
Alignment explanation
Indices: 72677740--72677911 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
72677730 CGCCCATAAG
*
72677740 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
72677804 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
72677833 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72677898 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72677912 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72677906 original size:46 final size:46
Alignment explanation
Indices: 72677733--72677908 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
72677723 TGTAACCCGC
* *
72677733 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
72677779 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72677829 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72677872 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72677909 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72687671 original size:61 final size:61
Alignment explanation
Indices: 72687604--72687914 Score: 239
Period size: 61 Copynumber: 5.2 Consensus size: 61
72687594 TTTATAAAGT
72687604 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * ** * * * * * * * *
72687665 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTCA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTGATTATTAAGAATTTTATTA-A
* *
72687724 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAAATTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * ** * * * * * * *
72687785 ATTATATATTTTAATTAAAATATATTTA-ATAATAAT-TATG-TTAAATT-A-TATTTT-CTAGT
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATAT-TGATT--ATTAAGAATTTTATTA-A
72687844 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
72687905 ATTATATATT
1 ATCATATATT
72687915 TTAATTAAAA
Statistics
Matches: 180, Mismatches: 52, Indels: 36
0.67 0.19 0.13
Matches are distributed among these distances:
58 7 0.04
59 62 0.34
60 33 0.18
61 71 0.39
62 7 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (61 bp):
ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:72687728 original size:59 final size:58
Alignment explanation
Indices: 72687665--72687949 Score: 175
Period size: 61 Copynumber: 4.8 Consensus size: 58
72687655 ATTTTATTAA
72687665 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAATTATTT-AAATTATATTTTATAGT
* * ** * * * * * * *
72687724 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TA-TTAATTATTAAGAAATTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTAA--ATT-A-TATTTTA-TAGT
* *
72687785 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTCTAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAATTATATTTTATAGT
* * ** * * * * * * * *
72687844 ATCATATATTATGATTTTAGTAAATTCATATAAGAA-TATTGATTATTAAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATTTA-AATT-A-TATTTTA-TAGT
*
72687905 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAA
72687950 ATATGATTAA
Statistics
Matches: 160, Mismatches: 49, Indels: 32
0.66 0.20 0.13
Matches are distributed among these distances:
57 2 0.01
58 6 0.04
59 56 0.35
60 27 0.17
61 59 0.37
62 6 0.04
63 4 0.03
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATAATAATTATTTAAATTATATTTTATAGT
Found at i:72687814 original size:120 final size:120
Alignment explanation
Indices: 72687601--72687949 Score: 646
Period size: 120 Copynumber: 2.9 Consensus size: 120
72687591 TAATTTATAA
72687601 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
*
72687666 TCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATATTTTAT
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTAT
* *
72687721 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAAATTTATTAAA
1 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
*
72687786 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTCT
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTAT
72687841 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
72687906 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
72687950 ATATGATTAA
Statistics
Matches: 222, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
120 220 0.99
121 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAA
TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTAT
Found at i:72687923 original size:18 final size:17
Alignment explanation
Indices: 72687895--72687929 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
72687885 ATTATTAAGA
*
72687895 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
72687912 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
72687930 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:72688116 original size:39 final size:40
Alignment explanation
Indices: 72688073--72688177 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
72688063 TTCCATTATG
72688073 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
72688112 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
72688157 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
72688178 ACACCTCTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:72688171 original size:45 final size:44
Alignment explanation
Indices: 72688071--72688180 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
72688061 TTTTCCATTA
72688071 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
72688110 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
72688155 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
72688181 CCTCTATTCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:72688180 original size:16 final size:16
Alignment explanation
Indices: 72688159--72688228 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
72688149 TTGATTTGCT
*
72688159 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
72688175 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
72688191 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
72688207 AATACAGCTCTAATCC
1 ATTACACCTCTAATCC
*
72688223 AATACA
1 ATTACA
72688229 ACGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.33, C:0.34, G:0.01, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:72689617 original size:46 final size:46
Alignment explanation
Indices: 72689550--72689722 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
72689540 TGTAACCCGC
* * *
72689550 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
* * *
72689596 CCATAAGTTAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC--GTTCGCAT
* * *
72689646 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
72689689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
72689723 GGATGCTCAA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 3 0.03
46 57 0.54
47 25 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
Found at i:72689671 original size:93 final size:93
Alignment explanation
Indices: 72689557--72689728 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
72689547 CGCCCATAAG
* * *
72689557 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTTAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72689622 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72689650 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72689715 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72689729 TCAATCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72691830 original size:28 final size:28
Alignment explanation
Indices: 72691798--72691877 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 28
72691788 CATACATGCT
*
72691798 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
72691826 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
*
72691855 TATGGCCTACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
72691878 TTTTACACTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.48
29 23 0.50
30 1 0.02
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:72691858 original size:29 final size:28
Alignment explanation
Indices: 72691798--72691877 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 28
72691788 CATACATGCT
*
72691798 TATGGCCCACTAGGCCCAATCTCATTCA
1 TATGGCCCACTAGGCCCAATCACATTCA
*
72691826 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TATGGCCCACTAGGCCC-AATCACATTC-A
*
72691855 TATGGCCTACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
72691878 TTTTACACTC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 24 0.52
29 22 0.48
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATTCA
Found at i:72697948 original size:22 final size:21
Alignment explanation
Indices: 72697900--72697945 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
72697890 ATTCTATGCT
72697900 AATTGATAAAGATTAATATATA
1 AATT-ATAAAGATTAATATATA
72697922 AATTATAATAGATATAATAATATA
1 AATTATAA-AGAT-TAAT-ATATA
72697946 TTAAAGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (21 bp):
AATTATAAAGATTAATATATA
Found at i:72704853 original size:46 final size:46
Alignment explanation
Indices: 72704800--72704975 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
72704790 TGGTTGAGCA
*
72704800 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
72704846 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
72704893 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
72704939 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72704976 GCGGGTTTCA
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 69 0.67
47 34 0.33
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72704956 original size:93 final size:93
Alignment explanation
Indices: 72704797--72704967 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
72704787 GGATGGTTGA
* * *
72704797 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72704862 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
72704890 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72704955 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72704968 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:72707908 original size:15 final size:15
Alignment explanation
Indices: 72707888--72707941 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
72707878 ATATCTTGGG
72707888 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
72707903 TCTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
72707918 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72707933 TTTCTTTAT
1 TTTCTTTAT
72707942 TCGTTTTCTT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.11, C:0.19, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72707918 original size:30 final size:30
Alignment explanation
Indices: 72707884--72707943 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
72707874 TATCATATCT
*
72707884 TGGGTTTCTTTATCCTGGATCTCTTTATTC
1 TGGGTTTCTCTATCCTGGATCTCTTTATTC
* *
72707914 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCCTGGATCTCTTTATTC
72707944 GTTTTCTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.10, C:0.18, G:0.17, T:0.55
Consensus pattern (30 bp):
TGGGTTTCTCTATCCTGGATCTCTTTATTC
Found at i:72710445 original size:46 final size:45
Alignment explanation
Indices: 72710286--72710455 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 45
72710276 GGTTGAGCAT
* * *
72710286 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCAACGC
* *
72710331 CCGAACTCGTTGAGTTGAGTCCGAGTTCGA---G-AGATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTGTGGATGCAAC---GC
*
72710376 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGC-AACGC
*
72710424 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
72710456 ATGGGCGGGT
Statistics
Matches: 106, Mismatches: 8, Indels: 21
0.79 0.06 0.16
Matches are distributed among these distances:
42 6 0.06
45 29 0.27
46 34 0.32
47 27 0.25
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCAACGC
Found at i:72721046 original size:27 final size:27
Alignment explanation
Indices: 72721009--72721111 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
72720999 AAATAGATTT
* * *
72721009 TTTGTGACAGAGTCACCAGATAAAGATA
1 TTTGTGGCAGAGCCACCAGA-ACAGATA
*
72721037 -TTGTGGCAGAGCCACTAGAACAGATA
1 TTTGTGGCAGAGCCACCAGAACAGATA
* *
72721063 TTTATGGCGGAGCCACCAGAACAGATA
1 TTTGTGGCAGAGCCACCAGAACAGATA
*
72721090 TTTGTGGCATAGCCACCAGAAC
1 TTTGTGGCAGAGCCACCAGAAC
72721112 GCTTCCTCCA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.09
27 58 0.91
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (27 bp):
TTTGTGGCAGAGCCACCAGAACAGATA
Found at i:72721361 original size:27 final size:27
Alignment explanation
Indices: 72721313--72721723 Score: 457
Period size: 27 Copynumber: 15.3 Consensus size: 27
72721303 GGGGCAAAAT
* * *
72721313 GGTAATTTTATCCC-ACAAGGGTATCTC
1 GGTAATTCTA-CCCTACAGGGGTATTTC
* *
72721340 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
72721367 GGTATTTCTACTCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72721394 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72721421 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
72721448 AATATTTCTA-CCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72721474 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72721501 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72721528 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72721555 AGTAATTCTACCCTACACGGCTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
72721582 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72721609 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72721636 AGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
72721663 AGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
72721690 TGTAATTCTACCCTAAAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
72721717 AGTAATT
1 GGTAATT
72721724 TTGTAAACTA
Statistics
Matches: 326, Mismatches: 56, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 24 0.07
27 302 0.93
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:72723740 original size:42 final size:43
Alignment explanation
Indices: 72723674--72723754 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 43
72723664 AGGAATTTTT
*
72723674 TGATCTAAACTCATTGAGTCGTGGTCTGAGTTTATGATTTATG
1 TGATCTAAACTCATTGAGTCGTGGTCTGAGTTCATGATTTATG
* * *
72723717 TGATTTAAACTCA-TGAGTTGTGGTTTGAGTTCATGATT
1 TGATCTAAACTCATTGAGTCGTGGTCTGAGTTCATGATT
72723755 ATGAGACACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 22 0.65
43 12 0.35
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43
Consensus pattern (43 bp):
TGATCTAAACTCATTGAGTCGTGGTCTGAGTTCATGATTTATG
Found at i:72725687 original size:47 final size:47
Alignment explanation
Indices: 72725628--72725821 Score: 316
Period size: 47 Copynumber: 4.1 Consensus size: 47
72725618 TAAGTTGAAT
*
72725628 TTAAAGCTTGTTAAATTTGCTCTTAATATTTTCGGATAAGTTACTTAG
1 TTAAA-CTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
72725676 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
* *
72725723 TTAAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAATTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
* * * *
72725770 TTAAGCTTATTACATTTGCCCTTAATATTTCCGGATAAGTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
72725817 TTAAA
1 TTAAA
72725822 GAAAATTTTA
Statistics
Matches: 138, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
47 133 0.96
48 5 0.04
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (47 bp):
TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
Found at i:72726690 original size:45 final size:44
Alignment explanation
Indices: 72726625--72726785 Score: 211
Period size: 45 Copynumber: 3.6 Consensus size: 44
72726615 TATCGTACAG
72726625 TACTATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGC-TTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
72726670 TACTATTCAGGACTTTGAGCCAAGCAGGCTATAATGCCGGTGAGA
1 TACTATTC-GGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
72726715 TACTATTCGGGGCTTCAAGCCTAGCA-GCTATAATGTCGGTGAAA
1 TACTATTC-GGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
72726759 TGA-TA-TCGGGCTTCGAGCCTAGCAGGC
1 T-ACTATTCGGGCTTCGAGCCTAGCAGGC
72726786 GAAATTTCGG
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
42 16 0.16
43 4 0.04
44 19 0.19
45 60 0.59
46 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (44 bp):
TACTATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:72736884 original size:40 final size:40
Alignment explanation
Indices: 72736840--72737069 Score: 263
Period size: 40 Copynumber: 5.8 Consensus size: 40
72736830 TAACCACAAG
72736840 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
* *
72736880 CACAAATTCCTTCGGGTCTTAGCCCGGATAAAATC-ACT-A
1 CACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCA
* * * * *
72736919 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAA-TCG
1 -CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
*
72736959 CACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT-A
1 CACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCA
* * * * * *
72736998 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCG
1 -CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
72737039 CACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 CACAAATGCCTTCGGGTCTTAGCCCGGATAT
72737070 CATTCAAATG
Statistics
Matches: 156, Mismatches: 25, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
39 35 0.22
40 117 0.75
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCA
Found at i:72736981 original size:79 final size:80
Alignment explanation
Indices: 72736819--72737068 Score: 396
Period size: 79 Copynumber: 3.1 Consensus size: 80
72736809 TCTTCGGAAT
* * * * * * * *
72736819 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCACAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
72736883 AAATTCCTTCGGGTC
66 AAATGCCTTCGGGTC
72736898 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAA-TCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72736962 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
72736977 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
72737042 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72737057 TTAGCCCGGATA
1 TTAGCCCGGATA
72737069 TCATTCAAAT
Statistics
Matches: 160, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
79 81 0.51
80 79 0.49
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:72737025 original size:119 final size:119
Alignment explanation
Indices: 72736839--72737065 Score: 309
Period size: 119 Copynumber: 1.9 Consensus size: 119
72736829 ATAACCACAA
* *
72736839 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCACACAAATTCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTCACACAAATTCCTTCGGGTCTTAACC
* *
72736904 CGGATAAAATC-ACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATC
66 CGGAT-AAAGCAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAATC
72736958 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT-AGCAC-AATTGCCTTCGGGTCTTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTCA-CACAAATT-CCTTCGGGTCTTA
* * * * *
72737020 ACCCGGGTATAGCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGG
63 ACCCGGATAAAGCAACTAGCACAAATGCCTTCGGGTCTTAACCCGG
72737066 ATATCATTCA
Statistics
Matches: 95, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
118 8 0.08
119 83 0.87
120 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (119 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTCACACAAATTCCTTCGGGTCTTAACC
CGGATAAAGCAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAATC
Found at i:72744931 original size:40 final size:40
Alignment explanation
Indices: 72744887--72745118 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
72744877 ATAACCACAA
72744887 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72744927 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
72744967 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72745007 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
72745047 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
72745087 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
72745119 CATTCAAATG
Statistics
Matches: 162, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.04
40 149 0.92
41 7 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:72744994 original size:80 final size:80
Alignment explanation
Indices: 72744867--72745117 Score: 423
Period size: 80 Copynumber: 3.1 Consensus size: 80
72744857 TCTTCGGAAT
* * * * * * * *
72744867 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
72744931 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72744946 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
72745011 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72745026 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
72745091 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
72745106 TTAGCCCGGATA
1 TTAGCCCGGATA
72745118 TCATTCAAAT
Statistics
Matches: 163, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
79 4 0.02
80 159 0.98
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAATTCGCAC
AAATGCCTTCGGGTC
Found at i:72748583 original size:24 final size:25
Alignment explanation
Indices: 72748451--72748570 Score: 195
Period size: 25 Copynumber: 4.8 Consensus size: 25
72748441 GAGGAAGTGC
* * *
72748451 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
72748476 AAAAGGGCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
72748501 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
72748526 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
72748551 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
72748571 ATTAAAAGAG
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 90 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:72748594 original size:50 final size:50
Alignment explanation
Indices: 72748451--72748595 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 50
72748441 GAGGAAGTGC
* * * ** *
72748451 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTAGGCCCCAGTTTACCA
** *
72748501 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTAGGCCCCAGTTTACCA
*
72748551 AAAAGGGCTTTGCCCCAG-TTAT-TAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTATCAAAAAG-GGCTAGGCC-CCAGTT
72748596 ATATGATAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
48 5 0.06
49 11 0.13
50 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTAGGCCCCAGTTTACCA
Found at i:72748594 original size:75 final size:75
Alignment explanation
Indices: 72748451--72748595 Score: 186
Period size: 75 Copynumber: 1.9 Consensus size: 75
72748441 GAGGAAGTGC
* * **
72748451 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTACCAAAAAGGGCTTTGCCC
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCC
72748516 CAGTTTATCA
66 CAGTTTATCA
* * **
72748526 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCC
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAG-GGCTAGGCC
72748589 TCCAGTT
65 -CCAGTT
72748596 ATATGATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
73 5 0.08
74 10 0.17
75 45 0.75
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (75 bp):
AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAGGGCTAGGCCC
CAGTTTATCA
Found at i:72759968 original size:40 final size:40
Alignment explanation
Indices: 72759894--72760115 Score: 376
Period size: 40 Copynumber: 5.6 Consensus size: 40
72759884 AACCCAAGTA
* *
72759894 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
72759933 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
72759973 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
72760013 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
72760053 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
72760093 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72760116 CATTCGAATA
Statistics
Matches: 173, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.07
40 158 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:72764584 original size:48 final size:48
Alignment explanation
Indices: 72764513--72764863 Score: 522
Period size: 48 Copynumber: 7.1 Consensus size: 48
72764503 CAAGATAAAT
* *
72764513 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
72764561 AGATATGTATAGGTAGTAAAGCCGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
72764609 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
72764657 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72764705 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCC-----G--AA--TG--GCTAGTGTGAAATATGTATG
72764764 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
72764812 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72764860 AGAT
1 AGAT
72764864 GTGTGGATAT
Statistics
Matches: 278, Mismatches: 14, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
48 226 0.81
50 2 0.01
52 2 0.01
53 1 0.00
54 1 0.00
55 2 0.01
57 2 0.01
59 42 0.15
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:72764762 original size:107 final size:107
Alignment explanation
Indices: 72764637--72764850 Score: 392
Period size: 107 Copynumber: 2.0 Consensus size: 107
72764627 AAGCCGAATG
72764637 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
72764702 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
72764744 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
* *
72764809 ATGAGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAA
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72764851 ATATGTAGGA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 103 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31
Consensus pattern (107 bp):
GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGC
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:72765057 original size:37 final size:37
Alignment explanation
Indices: 72765007--72765106 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
72764997 AATATATTCT
72765007 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
72765044 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
72765081 GGGTAAGACTCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
72765107 GGACTATTCG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:72766643 original size:40 final size:40
Alignment explanation
Indices: 72766388--72766634 Score: 422
Period size: 40 Copynumber: 6.2 Consensus size: 40
72766378 TTATATAGCT
* * * * *
72766388 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCT
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
72766428 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCT
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
72766468 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
72766508 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
72766548 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
72766588 GGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
72766628 GGGCTAA
1 GGGCTAA
72766635 ACCTCGAAGG
Statistics
Matches: 199, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 199 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
Found at i:72766759 original size:28 final size:28
Alignment explanation
Indices: 72766723--72766790 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
72766713 AGTAGTTGAG
72766723 GCACTATGTGTGCGAGTTCTTCAATCAA
1 GCACTATGTGTGCGAGTTCTTCAATCAA
* *
72766751 GCACTATGTGTGCGAGTTCTTTAATCGA
1 GCACTATGTGTGCGAGTTCTTCAATCAA
*
72766779 GCGCTATGTGTG
1 GCACTATGTGTG
72766791 AGAAATCAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTCAATCAA
Found at i:72769987 original size:48 final size:48
Alignment explanation
Indices: 72769916--72770559 Score: 986
Period size: 48 Copynumber: 13.1 Consensus size: 48
72769906 CAAGATAAAT
* *
72769916 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * *
72769964 AGATATGTATAGGTAGTAAAGCCGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
72770012 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
72770060 AGATATGTATATGTGGTAAAGCTGAATGGCTAGTGTGAAATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72770108 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCC-----G--AA--TG--GCTAGTGTGAAATATGTATG
72770167 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
72770215 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
72770263 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAGTATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72770311 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-A--TAT--G-TATG
*
72770366 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
72770414 AGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72770462 AG--ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
72770508 AGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72770556 AGAT
1 AGAT
72770560 GTGTGTATAT
Statistics
Matches: 552, Mismatches: 24, Indels: 40
0.90 0.04 0.06
Matches are distributed among these distances:
46 45 0.08
48 402 0.73
49 3 0.01
50 2 0.00
51 3 0.01
52 5 0.01
53 2 0.00
54 4 0.01
55 42 0.08
57 2 0.00
59 42 0.08
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:72770274 original size:155 final size:145
Alignment explanation
Indices: 72770147--72770559 Score: 699
Period size: 151 Copynumber: 2.8 Consensus size: 145
72770137 CTAATGTGAA
72770147 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
72770212 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
72770277 GGTAAAGCC-GAATG
131 GGTAAAGCCAGAATG
*
72770291 GCTAGTGTGAAGTATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-A--T
72770356 ATGAGATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
62 AT--G-TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72770421 TATATGTGGTAAAGCCA-AATG
124 TATATGTGGTAAAGCCAGAATG
72770442 GCTAGTGTGAAATATGTATGAG--ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
* * *
72770505 ATGAGATATGTATATGCGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
66 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
72770560 GTGTGTATAT
Statistics
Matches: 256, Mismatches: 5, Indels: 18
0.92 0.02 0.06
Matches are distributed among these distances:
142 53 0.21
143 1 0.00
144 56 0.22
145 5 0.02
146 1 0.00
147 1 0.00
148 5 0.02
149 33 0.13
150 1 0.00
151 100 0.39
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (145 bp):
GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
GGTAAAGCCAGAATG
Found at i:72770298 original size:203 final size:202
Alignment explanation
Indices: 72769948--72770546 Score: 1005
Period size: 203 Copynumber: 3.0 Consensus size: 202
72769938 CGAATGGCTA
* * * *
72769948 ATGTGAAATATATATGAGATATGTATAGGTAGTAAAGCCGAATGGCTAGTGTGAAATATGCATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
72770013 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
* * *
72770078 AAGCTGAATGGCTAGTGTGAAATATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
131 AAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
72770143 TGAAGCT
196 TGAAGCT
72770150 AGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 A-TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
72770215 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
65 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
72770280 AAAGCCGAATGGCTAGTGTGAAGTATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
130 AAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
72770345 GTGAA-AT
195 GTGAAGCT
*
72770352 ATGT---ATGA-GATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 ATGTGAAAT-ATG-TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAT
* *
72770413 GAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG--ATGTATATGTGG
64 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
*
72770476 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGCGGTAAAGCCGAATGGCTAG
129 TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
72770541 TGTGAA
194 TGTGAA
72770547 ATATGTAGGA
Statistics
Matches: 380, Mismatches: 14, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
197 81 0.21
198 3 0.01
199 100 0.26
201 3 0.01
202 3 0.01
203 190 0.50
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.31
Consensus pattern (202 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGA
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTG
TGAAGCT
Found at i:72770750 original size:37 final size:37
Alignment explanation
Indices: 72770700--72770802 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
72770690 GGAAATATAT
72770700 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72770737 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72770774 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
72770803 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72774274 original size:40 final size:40
Alignment explanation
Indices: 72774102--72774267 Score: 262
Period size: 40 Copynumber: 4.2 Consensus size: 40
72774092 AACTCAAGTA
* **
72774102 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72774141 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72774181 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72774221 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72774261 CCTTCGG
1 CCTTCGG
72774268 ATCTTAGTCG
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.11
40 104 0.89
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72801519 original size:156 final size:156
Alignment explanation
Indices: 72801247--72801536 Score: 431
Period size: 156 Copynumber: 1.9 Consensus size: 156
72801237 TAACACCCTA
* * * * * *
72801247 ATTTTGGGCCTAGTCAGAATAGTGGTTTCATGACCACAAATTCGACGATGAAAATTTTATTTTTT
1 ATTTTGGGCCTAGTCAGAATAGTGGTTTCAGGACCACAAATCCGACGAGGAAAATTATAGTTATT
* *
72801312 ATTATATTTTTATGGTCTACGATTTCACAGAATAATTTCGTAAAAATTTCGTTAGAAAATTTTGA
66 ATTATATTTTTATGGTCTACAATTTCACAGAATAATTTCGTAAAAATTTCGTTAGAAAATTTCGA
72801377 CGTTCGGCACTTAATGTAACAGCCCG
131 CGTTCGGCACTTAATGTAACAGCCCG
* * *
72801403 ATTTTGGGCCTAGTCGGAATAGTGGTTTCGGGACCACAAATCCGACGAGGGAAAA-TATGGTTAT
1 ATTTTGGGCCTAGTCAGAATAGTGGTTTCAGGACCACAAATCCGACGA-GGAAAATTATAGTTAT
* *
72801467 TATTATATTTTTATGGTCTACAATTTCACGGAA-AATTTTCGTAAAAATTTCGTTCGAAAATTTC
65 TATTATATTTTTATGGTCTACAATTTCACAGAATAA-TTTCGTAAAAATTTCGTTAGAAAATTTC
72801531 GACGTT
129 GACGTT
72801537 TGGGCACTCA
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
155 2 0.02
156 112 0.94
157 5 0.04
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (156 bp):
ATTTTGGGCCTAGTCAGAATAGTGGTTTCAGGACCACAAATCCGACGAGGAAAATTATAGTTATT
ATTATATTTTTATGGTCTACAATTTCACAGAATAATTTCGTAAAAATTTCGTTAGAAAATTTCGA
CGTTCGGCACTTAATGTAACAGCCCG
Found at i:72802838 original size:103 final size:104
Alignment explanation
Indices: 72802594--72802859 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
72802584 GTTGTACATA
** *
72802594 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
72802659 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
72802698 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
72802762 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
72802801 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
72802860 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:72810322 original size:103 final size:104
Alignment explanation
Indices: 72810078--72810343 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
72810068 GTTGTACATA
** *
72810078 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
72810143 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
72810182 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
72810246 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
72810285 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
72810344 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:72819540 original size:21 final size:21
Alignment explanation
Indices: 72819514--72819556 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
72819504 CCCAATGAGA
72819514 TAAGCCATTGGTGAGTATGTC
1 TAAGCCATTGGTGAGTATGTC
72819535 TAAGCCATTGGTGAGTATGTC
1 TAAGCCATTGGTGAGTATGTC
72819556 T
1 T
72819557 TTGAGTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (21 bp):
TAAGCCATTGGTGAGTATGTC
Found at i:72821228 original size:36 final size:36
Alignment explanation
Indices: 72821181--72821253 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
72821171 CGGATAAGGG
72821181 TGTTACAGATACCTTGCTAGATGGTGTCATTTTGAT
1 TGTTACAGATACCTTGCTAGATGGTGTCATTTTGAT
72821217 TGTTACAGATACCTTGCTAGATGGTGTCATTTTGAT
1 TGTTACAGATACCTTGCTAGATGGTGTCATTTTGAT
72821253 T
1 T
72821254 AACTTATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (36 bp):
TGTTACAGATACCTTGCTAGATGGTGTCATTTTGAT
Found at i:72822686 original size:64 final size:65
Alignment explanation
Indices: 72822549--72822692 Score: 170
Period size: 64 Copynumber: 2.2 Consensus size: 65
72822539 AAAGTGGCCA
* * * *
72822549 CACACGCCCGTGTGCTAGGCCATACCAAACCTGTAGGGTATGCTGACTTATACAACATGGCCAAG
1 CACATGCCCGTGTGCTAGGCCATACCAAA-CTGTAGGGTATACTGACTTATACAACATCGACAAG
72822614 T
65 T
* *
72822615 CACATGCCCGTGTGCTAGGCCATGTACC-AA-T-TAGGGGTATACTGACTTGTACCACA-CGACA
1 CACATGCCCGTGTGCTAGGCCA--TACCAAACTGTA-GGGTATACTGACTTATACAACATCGACA
72822676 AGT
63 AGT
72822679 CACATGCCCGTGTG
1 CACATGCCCGTGTG
72822693 TGAGACCGTG
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
64 22 0.32
65 20 0.29
66 21 0.30
67 2 0.03
68 4 0.06
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (65 bp):
CACATGCCCGTGTGCTAGGCCATACCAAACTGTAGGGTATACTGACTTATACAACATCGACAAGT
Found at i:72826021 original size:29 final size:29
Alignment explanation
Indices: 72825988--72826089 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
72825978 TGAATGTTAC
* *
72825988 TGGGCCTAACGGGCCATACAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* * *
72826017 TGGGCCTAATGGACCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
72826046 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
72826074 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
72826090 GATACAGGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:72826060 original size:58 final size:56
Alignment explanation
Indices: 72825988--72826102 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 56
72825978 TGAATGTTAC
* * *
72825988 TGGGCCTAACGGGCCATACAAATGTGATTTGGGCCTAATGGACCATATATAGGTGATT
1 TGGGCCTAACGGGCCATACAAATATGA-TTGGGCCTAATGGACCAGATACAGGT-ATT
* ** * *
72826046 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGTATT
1 TGGGCCTAACGGGCCATACAAATATGATTGGGCCTAATGGACCAGATACAGGTATT
72826102 T
1 T
72826103 TGTAAGGGGT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 4 0.08
57 22 0.45
58 23 0.47
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (56 bp):
TGGGCCTAACGGGCCATACAAATATGATTGGGCCTAATGGACCAGATACAGGTATT
Found at i:72827712 original size:34 final size:34
Alignment explanation
Indices: 72827643--72827729 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 34
72827633 TTGCATACTG
*
72827643 TACTGAAAAGGGCTAAGGCCCAGACTGTCACTGT
1 TACTGAAAAGGGCTAAGGCCCAGACTGTCAATGT
* * * *
72827677 TATTGAAATGGGCTAAGGTCCAGTCTG-CTAATGT
1 TACTGAAAAGGGCTAAGGCCCAGACTGTC-AATGT
72827711 TACTGAAAAAGGGGCTAAG
1 TACTG-AAAA-GGGCTAAG
72827730 ACTCCTAACT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
33 1 0.02
34 31 0.72
35 3 0.07
36 8 0.19
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (34 bp):
TACTGAAAAGGGCTAAGGCCCAGACTGTCAATGT
Found at i:72828615 original size:66 final size:66
Alignment explanation
Indices: 72828517--72828648 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
72828507 CATTTACTTA
72828517 GCCAAATACACGCCAAAACAATATCAAAGATTACGGTTCATTTATCATAATTCACATAACCATTT
1 GCCAAATACACGCCAAAACAATATCAAAGATTACGGTTCATTTATCATAATTCACATAACCATTT
72828582 T
66 T
72828583 GCCAAATACACGCCAAAACAATATCAAAGATTACGGTTCATTTATCATAATTCACATAACCATTT
1 GCCAAATACACGCCAAAACAATATCAAAGATTACGGTTCATTTATCATAATTCACATAACCATTT
72828648 T
66 T
72828649 AACTTCCATA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (66 bp):
GCCAAATACACGCCAAAACAATATCAAAGATTACGGTTCATTTATCATAATTCACATAACCATTT
T
Found at i:72829736 original size:49 final size:50
Alignment explanation
Indices: 72829675--72829912 Score: 282
Period size: 49 Copynumber: 4.8 Consensus size: 50
72829665 TGAGGTCATG
* * *
72829675 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * * *
72829724 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAA-TTAGGTCACA
* * ** * *
72829775 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCTCG
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTCACA
* **
72829825 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GGTCACA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTCACA
* *
72829874 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATA
72829913 GCTTTGGCTA
Statistics
Matches: 159, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 77 0.48
50 44 0.28
51 38 0.24
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTCACA
Found at i:72832939 original size:10 final size:9
Alignment explanation
Indices: 72832916--72832940 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
72832906 TTTGATGTTA
72832916 GTTTTTGAT
1 GTTTTTGAT
72832925 GTTTTTGAT
1 GTTTTTGAT
72832934 GTTTTTG
1 GTTTTTG
72832941 TGTAACACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (9 bp):
GTTTTTGAT
Found at i:72834668 original size:79 final size:80
Alignment explanation
Indices: 72834569--72834789 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
72834559 CTCGTTCAAG
* * ** * *
72834569 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
72834632 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
72834648 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
72834713 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
72834728 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
72834790 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:72834720 original size:80 final size:80
Alignment explanation
Indices: 72834609--72834789 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
72834599 CTCATTCAAT
* * *
72834609 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
72834672 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
72834688 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
72834752 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
72834769 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
72834790 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:72834749 original size:40 final size:40
Alignment explanation
Indices: 72834606--72834789 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
72834596 TAACTCATTC
* *
72834606 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
72834646 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
72834686 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
72834726 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
72834767 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72834790 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:72842566 original size:79 final size:80
Alignment explanation
Indices: 72842467--72842687 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
72842457 CTCGTTCAAG
* * ** * *
72842467 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
72842530 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
72842546 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
72842611 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
72842626 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
72842688 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:72842618 original size:80 final size:80
Alignment explanation
Indices: 72842507--72842687 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
72842497 CTCATTCAAT
* * *
72842507 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
72842570 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
72842586 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
72842650 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
72842667 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
72842688 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:72842647 original size:40 final size:40
Alignment explanation
Indices: 72842504--72842687 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
72842494 TAACTCATTC
* *
72842504 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
72842544 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
72842584 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
72842624 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
72842665 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72842688 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:72845215 original size:10 final size:10
Alignment explanation
Indices: 72845200--72845230 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
72845190 CATCTCACTC
72845200 ATCAACCATA
1 ATCAACCATA
72845210 ATCAACCATA
1 ATCAACCATA
72845220 ATCAACCATA
1 ATCAACCATA
72845230 A
1 A
72845231 CCACATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (10 bp):
ATCAACCATA
Found at i:72861327 original size:43 final size:43
Alignment explanation
Indices: 72861265--72861441 Score: 232
Period size: 43 Copynumber: 4.1 Consensus size: 43
72861255 GATGTATATG
*
72861265 TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGAATGT
1 TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGGATGT
* * *
72861308 TGGCATCGGTATGTGATTACGTGTAAGACCACGTC-GGGATGT
1 TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGGATGT
* * *
72861350 TGGCATC-ATTATGTAATTATGTGTATGACCACGTCTAGGACGT
1 TGGCATCGA-TATGTAATTACGTGTAAGACCACGTCTAGGATGT
* * * *
72861393 TGGCATCGATATGTGATTACATGTAAGATCACGTCTGGGATGT
1 TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGGATGT
72861436 TGGCAT
1 TGGCAT
72861442 TGTAGAATAT
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
42 35 0.31
43 78 0.68
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGGATGT
Found at i:72861408 original size:85 final size:86
Alignment explanation
Indices: 72861265--72861441 Score: 268
Period size: 85 Copynumber: 2.1 Consensus size: 86
72861255 GATGTATATG
* * *
72861265 TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGAATGTTGGCATCGGTATGTGATTACGT
1 TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGAACGTTGGCATCGATATGTGATTACAT
72861330 GTAAGACCACGTC-GGGATGT
66 GTAAGACCACGTCTGGGATGT
* * *
72861350 TGGCATC-ATTATGTAATTATGTGTATGACCACGTCTAGGACGTTGGCATCGATATGTGATTACA
1 TGGCATCGA-TATGTAATTACGTGTAAGACCACGTCTAGAACGTTGGCATCGATATGTGATTACA
*
72861414 TGTAAGATCACGTCTGGGATGT
65 TGTAAGACCACGTCTGGGATGT
72861436 TGGCAT
1 TGGCAT
72861442 TGTAGAATAT
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
84 1 0.01
85 69 0.83
86 13 0.16
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (86 bp):
TGGCATCGATATGTAATTACGTGTAAGACCACGTCTAGAACGTTGGCATCGATATGTGATTACAT
GTAAGACCACGTCTGGGATGT
Found at i:72864196 original size:28 final size:28
Alignment explanation
Indices: 72864162--72864235 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
72864152 CTTACACCCG
*
72864162 ATCTCGCACACATAGTGCTCGGTTAATA
1 ATCTCGCACACATAGTGCTCGATTAATA
* *
72864190 ATTTCGCACACATAGTGCTCGATTACTA
1 ATCTCGCACACATAGTGCTCGATTAATA
72864218 ATCTCGCACACATAGTGC
1 ATCTCGCACACATAGTGC
72864236 ATATATTCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (28 bp):
ATCTCGCACACATAGTGCTCGATTAATA
Found at i:72869378 original size:20 final size:19
Alignment explanation
Indices: 72869332--72869378 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
72869322 TTTGTTTTTC
* *
72869332 TTTCTTTTCTTCCTGCCGA
1 TTTCTATTCTTCCTGCCAA
72869351 TTTCTATTCTTCTCTGCACAA
1 TTTCTATTCTTC-CTGC-CAA
72869372 TTT-TATT
1 TTTCTATT
72869379 TGTTTCACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 8 0.33
21 5 0.21
ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55
Consensus pattern (19 bp):
TTTCTATTCTTCCTGCCAA
Found at i:72871141 original size:15 final size:15
Alignment explanation
Indices: 72871121--72871154 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
72871111 TGTATCGGCA
72871121 AAAGCTAAAATGCCG
1 AAAGCTAAAATGCCG
*
72871136 AAAGCTGAAATGCCG
1 AAAGCTAAAATGCCG
72871151 AAAG
1 AAAG
72871155 TTTGGCTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (15 bp):
AAAGCTAAAATGCCG
Found at i:72871423 original size:29 final size:29
Alignment explanation
Indices: 72871391--72871477 Score: 122
Period size: 29 Copynumber: 3.0 Consensus size: 29
72871381 TTAACAGGCG
72871391 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
72871420 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
72871449 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
72871477 A
1 A
72871478 GATACAGGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 16 0.31
29 35 0.69
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:72871473 original size:28 final size:29
Alignment explanation
Indices: 72871363--72871477 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
72871353 GTGAGCATGA
* * ** *
72871363 ATATGAATGTGA-CTGGGCTTAACAGGCG
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72871391 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
72871420 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
72871449 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
72871477 A
1 A
72871478 GATACAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 28 0.38
29 45 0.61
30 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:72875070 original size:49 final size:49
Alignment explanation
Indices: 72875002--72875185 Score: 269
Period size: 49 Copynumber: 3.7 Consensus size: 49
72874992 TCTATTGTGA
* *
72875002 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
** * *
72875051 GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT
* * *
72875101 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
72875151 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
72875186 CGTGCCAGGT
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 73 0.62
50 4 0.03
51 40 0.34
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:72875177 original size:100 final size:100
Alignment explanation
Indices: 72875004--72875188 Score: 334
Period size: 100 Copynumber: 1.9 Consensus size: 100
72874994 TATTGTGAGG
* * **
72875004 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTATTGGTCGTATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
72875069 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
72875104 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
72875169 AAGTGCAGGCTACTATGCGT
66 AAGTGCAGGCTACTATGCGT
72875189 GCCAGGTAGC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:72878543 original size:31 final size:31
Alignment explanation
Indices: 72878502--72878578 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
72878492 TTTAGAAAGT
* * *
72878502 CACACACCCGTGTGGGTAGGCCGTGTTGTCA
1 CACACGCCCGTGTGGGTAGGCCGTATGGTCA
*
72878533 CACACGCCCGTGTGGGTAGGTCGTATGGTCA
1 CACACGCCCGTGTGGGTAGGCCGTATGGTCA
*
72878564 CACACGCCAGTGTGG
1 CACACGCCCGTGTGG
72878579 CTTGGGACAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.21
Consensus pattern (31 bp):
CACACGCCCGTGTGGGTAGGCCGTATGGTCA
Found at i:72884814 original size:40 final size:38
Alignment explanation
Indices: 72884695--72884831 Score: 112
Period size: 38 Copynumber: 3.6 Consensus size: 38
72884685 GCAGGCTATA
* ** *** *
72884695 TGCTGGAATTATATCCAGGTTAAATTTTGCAGGCTTCG
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAAGCTTCG
* * * *
72884733 TGCTGGTAATATATCTGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAAGCTTCG
* *
72884771 TGCTGGTATTATATCTGAGTTTAAAGTCCCGTAAGCTTCG
1 TGCTGGTATTATATCTG-GGTTAAA-TCCCGCAAGCTTCG
* * *
72884811 TGCTGGTGTTATGTTTGGGTT
1 TGCTGGTATTATATCTGGGTT
72884832 TTATACCTCG
Statistics
Matches: 78, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
38 45 0.58
39 9 0.12
40 24 0.31
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.37
Consensus pattern (38 bp):
TGCTGGTATTATATCTGGGTTAAATCCCGCAAGCTTCG
Found at i:72886267 original size:42 final size:42
Alignment explanation
Indices: 72886150--72886269 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 42
72886140 TGTGATCATG
* * * * *
72886150 TAAGACAATATCTGGGATATGGCGTTGATATGAGATTTAGTG
1 TAAGACCATATCTGGGATATGGCATCGATGTGAGATTTAGTA
* * * * * * *
72886192 TAAGACCATGTCTAGGACATGACATCAAAGTGAGATTTCGTA
1 TAAGACCATATCTGGGATATGGCATCGATGTGAGATTTAGTA
*
72886234 TAAGACCATATATGGGATATGGCATCGATGTGAGAT
1 TAAGACCATATCTGGGATATGGCATCGATGTGAGAT
72886270 CCCATGTAAG
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATGTGAGATTTAGTA
Found at i:72886298 original size:42 final size:41
Alignment explanation
Indices: 72886190--72886300 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 41
72886180 TGAGATTTAG
* ** *
72886190 TGTAAGACCATGTCTAGGACATGACATCAAAGTGAGATTTCG
1 TGTAAGACCATGTCT-GGACATGGCATCAAAGTGAGATCCCA
* * * * * *
72886232 TATAAGACCATATATGGGATATGGCATCGATGTGAGATCCCA
1 TGTAAGACCATGTCT-GGACATGGCATCAAAGTGAGATCCCA
72886274 TGTAAGACCATGTCTGGTACATGGCAT
1 TGTAAGACCATGTCTGG-ACATGGCAT
72886301 TGGCATCTTA
Statistics
Matches: 53, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
41 2 0.04
42 51 0.96
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGACATGGCATCAAAGTGAGATCCCA
Found at i:72886528 original size:27 final size:27
Alignment explanation
Indices: 72886479--72886533 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
72886469 AAGATGAGAA
** *
72886479 TAAAGAAATTATTATTTCGAGTTCTAT
1 TAAAGAAATTACGATCTCGAGTTCTAT
*
72886506 TAAAGAAATTACGATCTCTAGTTCTAT
1 TAAAGAAATTACGATCTCGAGTTCTAT
72886533 T
1 T
72886534 GAACATTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (27 bp):
TAAAGAAATTACGATCTCGAGTTCTAT
Found at i:72888642 original size:40 final size:40
Alignment explanation
Indices: 72888585--72888690 Score: 167
Period size: 40 Copynumber: 2.6 Consensus size: 40
72888575 TGAGGAATTG
* * *
72888585 TATCCGGGTTTAGAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
*
72888625 TATCCGGGCTTAAAGACCCGCAAGCTATGTGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
*
72888665 TATCCGGGCTTAAAGACCCTCAAGCT
1 TATCCGGGCTTAAAGACCCGCAAGCT
72888691 TCGTGTTAGA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
Found at i:72888703 original size:40 final size:40
Alignment explanation
Indices: 72888585--72888714 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
72888575 TGAGGAATTG
* * * * *
72888585 TATCCGGGTTTAGAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATGTGCTAGAATGT
*
72888625 TATCCGGGCTTAAAGACCCGCAAGCTATGTGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATGTGCTAGAATGT
* * *
72888665 TATCCGGGCTTAAAGACCCTCAAGCT-TCGTGTTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAAGCTAT-GTGCTAGAATGT
72888705 TATCCGGGCT
1 TATCCGGGCT
72888715 AGAGACCTGC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAAGCTATGTGCTAGAATGT
Found at i:72894713 original size:40 final size:40
Alignment explanation
Indices: 72894676--72894781 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 40
72894666 TGAGGAATTG
* *
72894676 TATCTGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGC
* * * * *
72894716 TATCCAGGCTTAAAGACCTGCAGGCTTTGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGC
*
72894756 TATCCGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
72894782 CGAGCTGGTA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
39 14 0.25
40 41 0.75
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATGC
Found at i:72900745 original size:22 final size:22
Alignment explanation
Indices: 72900714--72900792 Score: 95
Period size: 22 Copynumber: 3.6 Consensus size: 22
72900704 AATATGATTT
*
72900714 GCACAAAGCCATAATCAACATA
1 GCACAGAGCCATAATCAACATA
* * *** *
72900736 GCACAGAGCCATATTTAGGTTG
1 GCACAGAGCCATAATCAACATA
72900758 GCACAGAGCCATAATCAACATA
1 GCACAGAGCCATAATCAACATA
72900780 GCACAGAGCCATA
1 GCACAGAGCCATA
72900793 TTTAGATTGG
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.41, C:0.25, G:0.18, T:0.16
Consensus pattern (22 bp):
GCACAGAGCCATAATCAACATA
Found at i:72900768 original size:44 final size:44
Alignment explanation
Indices: 72900709--72900818 Score: 193
Period size: 44 Copynumber: 2.5 Consensus size: 44
72900699 TAGTAAATAT
*
72900709 GATTTGCACAAAGCCATAATCAACATAGCACAGAGCCATATTTA
1 GATTGGCACAAAGCCATAATCAACATAGCACAGAGCCATATTTA
* *
72900753 GGTTGGCACAGAGCCATAATCAACATAGCACAGAGCCATATTTA
1 GATTGGCACAAAGCCATAATCAACATAGCACAGAGCCATATTTA
72900797 GATTGGCACAAAGCCATAATCA
1 GATTGGCACAAAGCCATAATCA
72900819 GATTAAGCAG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (44 bp):
GATTGGCACAAAGCCATAATCAACATAGCACAGAGCCATATTTA
Found at i:72900821 original size:22 final size:22
Alignment explanation
Indices: 72900709--72900823 Score: 90
Period size: 22 Copynumber: 5.2 Consensus size: 22
72900699 TAGTAAATAT
* *
72900709 GATTTGCACAAAGCCATAATCA
1 GATTAGCACAGAGCCATAATCA
* * *
72900731 -ACATAGCACAGAGCCATATTTA
1 GA-TTAGCACAGAGCCATAATCA
* *
72900753 GGTTGGCACAGAGCCATAATCA
1 GATTAGCACAGAGCCATAATCA
* * *
72900775 -ACATAGCACAGAGCCATATTTA
1 GA-TTAGCACAGAGCCATAATCA
* *
72900797 GATTGGCACAAAGCCATAATCA
1 GATTAGCACAGAGCCATAATCA
72900819 GATTA
1 GATTA
72900824 AGCAGCACTA
Statistics
Matches: 68, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
21 1 0.01
22 66 0.97
23 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (22 bp):
GATTAGCACAGAGCCATAATCA
Found at i:72901207 original size:27 final size:27
Alignment explanation
Indices: 72901169--72901282 Score: 108
Period size: 27 Copynumber: 4.2 Consensus size: 27
72901159 CAAAACAGTC
* *
72901169 ATTTTACCCTACAGGGGTTTTTCGATA
1 ATTTTACACTACAGGGGTATTTCGATA
**
72901196 ATTTTACACTACAAAGGTATTTCGATA
1 ATTTTACACTACAGGGGTATTTCGATA
* * *
72901223 ATTTTACA-AATCGGGGGTATTTTGATA
1 ATTTTACACTA-CAGGGGTATTTCGATA
*
72901250 ATTTTACAAACT-CA-GGGTATTTCGGTA
1 ATTTTAC--ACTACAGGGGTATTTCGATA
72901277 ATTTTA
1 ATTTTA
72901283 TAAATTGGGG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 67 0.96
28 1 0.01
29 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTCGATA
Found at i:72901240 original size:54 final size:53
Alignment explanation
Indices: 72901182--72901419 Score: 180
Period size: 54 Copynumber: 4.4 Consensus size: 53
72901172 TTACCCTACA
72901182 GGGGT-TTTTCGATAATTTTACACTACAAAGGTATTTCGATAATTTTACAAATCG
1 GGGGTATTTT-GATAATTTTACACTAC-AAGGTATTTCGATAATTTTACAAATCG
* * * *
72901236 GGGGTATTTTGATAATTTTACAAACT-CAGGGTATTTCGGTAATTTTATAAATTG
1 GGGGTATTTTGATAATTTTAC--ACTACAAGGTATTTCGATAATTTTACAAATCG
* * * * *
72901290 GGGGTATTTT-AGTAATTTTACA-AACCGAGGATATTTCAATAATTTTACAAACCA
1 GGGGTATTTTGA-TAATTTTACACTA-CAAGG-TATTTCGATAATTTTACAAATCG
* ** * **** * *
72901344 GGGGTATTTTAATAATTCCACAAATTGGGGGTATTTCGGTAATTTTACAAA-CTA
1 GGGGTATTTTGATAATTTTAC-ACTACAAGGTATTTCGATAATTTTACAAATC-G
*
72901398 GGGGTATTTTGGTAATTTTACA
1 GGGGTATTTTGATAATTTTACA
72901420 AATAGGGGGT
Statistics
Matches: 148, Mismatches: 25, Indels: 23
0.76 0.13 0.12
Matches are distributed among these distances:
52 1 0.01
53 6 0.04
54 128 0.86
55 10 0.07
56 3 0.02
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
GGGGTATTTTGATAATTTTACACTACAAGGTATTTCGATAATTTTACAAATCG
Found at i:72901294 original size:27 final size:27
Alignment explanation
Indices: 72901211--72901440 Score: 212
Period size: 27 Copynumber: 8.5 Consensus size: 27
72901201 ACACTACAAA
*
72901211 GGTATTTCGATAATTTTACAAA-TCGGG
1 GGTATTTCGGTAATTTTACAAACT-GGG
* * **
72901238 GGTATTTTGATAATTTTACAAACTCAG
1 GGTATTTCGGTAATTTTACAAACTGGG
* *
72901265 GGTATTTCGGTAATTTTATAAATTGGG
1 GGTATTTCGGTAATTTTACAAACTGGG
** * *
72901292 GGTATTTTAGTAATTTTACAAACCGAG
1 GGTATTTCGGTAATTTTACAAACTGGG
* ** **
72901319 GATATTTCAATAATTTTACAAACCAGG
1 GGTATTTCGGTAATTTTACAAACTGGG
*** ** *
72901346 GGTATTTTAATAATTCCACAAATTGGG
1 GGTATTTCGGTAATTTTACAAACTGGG
*
72901373 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTGGG
*
72901400 GGTATTTTGGTAATTTTACAAA-TAGGG
1 GGTATTTCGGTAATTTTACAAACT-GGG
72901427 GGTATTTCGGTAAT
1 GGTATTTCGGTAAT
72901441 CTAAACAGCT
Statistics
Matches: 164, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 162 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAACTGGG
Found at i:72901306 original size:81 final size:81
Alignment explanation
Indices: 72901211--72901440 Score: 254
Period size: 81 Copynumber: 2.8 Consensus size: 81
72901201 ACACTACAAA
72901211 GGTATTTC-GATAATTTTACAAATCGGGGGTATTTTGATAATTTTACAAACTCA-GGGTATTTCG
1 GGTATTTCAG-TAATTTTACAAA-CGGGGGTATTTTGATAATTTTACAAACTCAGGGGTATTTCG
** *
72901274 GTAATTTTATAAATTGGG
64 GTAATTCCACAAATTGGG
* * * ** ***
72901292 GGTATTTTAGTAATTTTACAAACCGAGGATATTTCAATAATTTTACAAAC-CAGGGGTATTTTAA
1 GGTATTTCAGTAATTTTACAAA-CGGGGGTATTTTGATAATTTTACAAACTCAGGGGTATTTCGG
72901356 TAATTCCACAAATTGGG
65 TAATTCCACAAATTGGG
* * *
72901373 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-T-AGGGGGTATTTCG
1 GGTATTTCAGTAATTTTACAAAC-GGGGGTATTTTGATAATTTTACAAACTCA-GGGGTATTTCG
72901436 GTAAT
64 GTAAT
72901441 CTAAACAGCT
Statistics
Matches: 121, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
80 4 0.03
81 116 0.96
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAACGGGGGTATTTTGATAATTTTACAAACTCAGGGGTATTTCGGT
AATTCCACAAATTGGG
Found at i:72901421 original size:54 final size:54
Alignment explanation
Indices: 72901211--72901440 Score: 248
Period size: 54 Copynumber: 4.3 Consensus size: 54
72901201 ACACTACAAA
* * * *
72901211 GGTATTTCGATAATTTTACAAA-TCGGGGGTATTTTGATAATTTTACAAACTCAG
1 GGTATTTCGGTAATTTTACAAACT-AGGGGTATTTTAATAATTTTACAAACTGAG
* * * * *
72901265 GGTATTTCGGTAATTTTATAAATTGGGGGTATTTTAGTAATTTTACAAACCGAG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACTGAG
* ** * ** * *
72901319 GATATTTCAATAATTTTACAAACCAGGGGTATTTTAATAATTCCACAAATTGGG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACTGAG
** *
72901373 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA-TAGGG
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACT-GAG
72901427 GGTATTTCGGTAAT
1 GGTATTTCGGTAAT
72901441 CTAAACAGCT
Statistics
Matches: 147, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 145 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACTGAG
Found at i:72907368 original size:46 final size:46
Alignment explanation
Indices: 72907316--72907491 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
72907306 TGTAACCCGC
* *
72907316 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTCCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACGTCCGAAT
* * * * *
72907362 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATG-CCTAATT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACGTCCGAA-T
* * * * * *
72907408 ACATCTCA-CAAACTCGGACTCAACTCAACAAGCTCGGACATTCGTAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACAAGCTCGGACGTCCGAAT
* **
72907455 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGA
72907492 TTCCCAAATA
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
45 5 0.05
46 63 0.62
47 29 0.29
48 4 0.04
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACGTCCGAAT
Found at i:72908836 original size:25 final size:25
Alignment explanation
Indices: 72908808--72908857 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
72908798 TTTCAGGAGA
72908808 AAGAGACAGGAACATTATTGAGTCC
1 AAGAGACAGGAACATTATTGAGTCC
72908833 AAGAGACAGGAACATTATTGAGTCC
1 AAGAGACAGGAACATTATTGAGTCC
72908858 CGTAATATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (25 bp):
AAGAGACAGGAACATTATTGAGTCC
Found at i:72910855 original size:41 final size:41
Alignment explanation
Indices: 72910798--72910881 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
72910788 TAATGGAGGA
72910798 ATATGGAAGTTTGGTGTTAGATGAACATCTTCTTCTAAGTG
1 ATATGGAAGTTTGGTGTTAGATGAACATCTTCTTCTAAGTG
*
72910839 ATATGGAAGTTTGGTGTTAGATGAACATCTTTTTCTAAGTG
1 ATATGGAAGTTTGGTGTTAGATGAACATCTTCTTCTAAGTG
72910880 AT
1 AT
72910882 TTTTAAGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.40
Consensus pattern (41 bp):
ATATGGAAGTTTGGTGTTAGATGAACATCTTCTTCTAAGTG
Found at i:72911523 original size:40 final size:40
Alignment explanation
Indices: 72911468--72911621 Score: 148
Period size: 42 Copynumber: 3.8 Consensus size: 40
72911458 CAGCATCGGT
* * * *
72911468 ATATGATATCATGTAAGACCATATCTGGGATATGGCGTTG
1 ATATGAGATCATGTAAGACCATATCTGGGAAATGGCATCG
* * *
72911508 ATATGAGATCGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATATGAGATCATGTAAGACCATATCTGGGAAATGGCATCG
* * *
72911548 A-AGTGAGATTTCGTATAAGACCATATTTGGGAAATGGCATCG
1 ATA-TGAGA--TCATGTAAGACCATATCTGGGAAATGGCATCG
* *
72911590 ATGTGAGATCCCATGTAAGACCATGTCTGGGA
1 ATATGAGAT--CATGTAAGACCATATCTGGGA
72911622 CATTTTGGCA
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
39 1 0.01
40 41 0.44
42 51 0.55
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATGAGATCATGTAAGACCATATCTGGGAAATGGCATCG
Found at i:72911579 original size:42 final size:41
Alignment explanation
Indices: 72911421--72911621 Score: 136
Period size: 42 Copynumber: 4.7 Consensus size: 41
72911411 TTTGGATCAA
* *
72911421 TGAGATCTCGTATAAGACCATATCTGGGATATGGCATCAGCATCGG
1 TGAGAT-TCGTATAAGACCATATCTGGGAAATGGCATC-G-A--AG
* * * * * *
72911467 TATATGATATCATGTAAGACCATATCTGGGATATGGCGTTGATA-
1 T-GA-GAT-TCGTATAAGACCATATCTGGGAAATGGCATCGA-AG
* * *
72911511 TGAGA-TCGTGTAAGACCATGTCTGGGACATGGCATCGAAG
1 TGAGATTCGTATAAGACCATATCTGGGAAATGGCATCGAAG
* *
72911551 TGAGATTTCGTATAAGACCATATTTGGGAAATGGCATCGATG
1 TGAGA-TTCGTATAAGACCATATCTGGGAAATGGCATCGAAG
* * * *
72911593 TGAGATCCCATGTAAGACCATGTCTGGGA
1 TGAGAT-TCGTATAAGACCATATCTGGGA
72911622 CATTTTGGCA
Statistics
Matches: 125, Mismatches: 24, Indels: 16
0.76 0.15 0.10
Matches are distributed among these distances:
39 1 0.01
40 33 0.26
41 1 0.01
42 54 0.43
43 1 0.01
44 1 0.01
46 2 0.02
47 2 0.02
48 30 0.24
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (41 bp):
TGAGATTCGTATAAGACCATATCTGGGAAATGGCATCGAAG
Found at i:72925611 original size:32 final size:32
Alignment explanation
Indices: 72925565--72925642 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
72925555 TTTGGAGAGT
* *
72925565 CACACACCCATGTGTGTTTAACCGTGTGGTCA
1 CACACGCCCATGTGTGTTGAACCGTGTGGTCA
*
72925597 CACACGCCCGTGTGTGTTGAACCGTGTGGTCA
1 CACACGCCCATGTGTGTTGAACCGTGTGGTCA
*
72925629 CACATGCCCATGTG
1 CACACGCCCATGTG
72925643 GCTTGGGACA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (32 bp):
CACACGCCCATGTGTGTTGAACCGTGTGGTCA
Found at i:72928749 original size:57 final size:57
Alignment explanation
Indices: 72928687--72928801 Score: 196
Period size: 57 Copynumber: 2.0 Consensus size: 57
72928677 TTGGAAAATC
*
72928687 AAATGACACATATAACAAAATATTAAAAAATACTACACATGCCATTGAACAAAA-TAA
1 AAATGACACATATAACAAAATACTAAAAAATACTACACATGCCATTGAA-AAAAGTAA
*
72928744 AAATGACACATATAACAAAATACTAAAAAATACTATACATGCCATTGAAAAAAGTAA
1 AAATGACACATATAACAAAATACTAAAAAATACTACACATGCCATTGAAAAAAGTAA
72928801 A
1 A
72928802 CTAAGTCTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
56 4 0.07
57 51 0.93
ACGTcount: A:0.58, C:0.15, G:0.06, T:0.21
Consensus pattern (57 bp):
AAATGACACATATAACAAAATACTAAAAAATACTACACATGCCATTGAAAAAAGTAA
Found at i:72929570 original size:34 final size:34
Alignment explanation
Indices: 72929527--72929593 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
72929517 ACATGTAGGA
72929527 TCTTTTTACACATATCAATGAGGGCTTATCTATG
1 TCTTTTTACACATATCAATGAGGGCTTATCTATG
*
72929561 TCTTTTTACACATATCAATGAGGGTTTATCTAT
1 TCTTTTTACACATATCAATGAGGGCTTATCTAT
72929594 CGAATTCCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.43
Consensus pattern (34 bp):
TCTTTTTACACATATCAATGAGGGCTTATCTATG
Found at i:72931067 original size:37 final size:38
Alignment explanation
Indices: 72931001--72931075 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 38
72930991 CCTATCATGC
72931001 GAGGATAAAAAATATAAAATGAATAAATATAAATTTAT
1 GAGGATAAAAAATATAAAATGAATAAATATAAATTTAT
** *
72931039 GAGGATAACGAATAT-AAATGACTAAATATAAATTTAT
1 GAGGATAAAAAATATAAAATGAATAAATATAAATTTAT
72931076 TCCCTACTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 21 0.62
38 13 0.38
ACGTcount: A:0.56, C:0.03, G:0.12, T:0.29
Consensus pattern (38 bp):
GAGGATAAAAAATATAAAATGAATAAATATAAATTTAT
Found at i:72940922 original size:67 final size:67
Alignment explanation
Indices: 72940814--72940949 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
72940804 TAACTATTAA
*
72940814 AAATTTAACATAACTATATATTTTTCACATCTAAAAGAAAGTGTTGTTAAAGAATTATAAAAGCA
1 AAATTTAACATAACTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
72940879 AC
66 AC
*
72940881 AAATTTAACATATCTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
1 AAATTTAACATAACTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
72940946 AC
66 AC
72940948 AA
1 AA
72940950 GGTCAAGGTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (67 bp):
AAATTTAACATAACTATATATTTTTCACATCTAAAAAAAAGTGTTGTTAAAGAATTATAAAAGCA
AC
Found at i:72941260 original size:16 final size:17
Alignment explanation
Indices: 72941225--72941263 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
72941215 TTAATTAATT
*
72941225 TTTTAATATTTTTATAA
1 TTTTAATAATTTTATAA
72941242 TTTTAATAATTTT-TAA
1 TTTTAATAATTTTATAA
72941258 TTTTAA
1 TTTTAA
72941264 AAAATAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTAATAATTTTATAA
Found at i:72942099 original size:18 final size:19
Alignment explanation
Indices: 72942063--72942109 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
72942053 GTCCTAGATA
*
72942063 TTATTTTTTTTATAAAATT
1 TTATATTTTTTATAAAATT
*
72942082 TTATATTTTTT-TACAATT
1 TTATATTTTTTATAAAATT
72942100 TTATATTTTT
1 TTATATTTTT
72942110 ACGATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATATTTTTTATAAAATT
Found at i:72942181 original size:24 final size:26
Alignment explanation
Indices: 72942147--72942211 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 26
72942137 TTTATAATTC
72942147 TTTTATGATTTTTATTTCTAT-A-G-T
1 TTTTAT-ATTTTTATTTCTATAATGAT
*
72942171 TTTCTATATTTTTATTTTTATAATGAT
1 TTT-TATATTTTTATTTCTATAATGAT
72942198 TTTTATATTTTTAT
1 TTTTATATTTTTAT
72942212 AATGTTTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 16 0.44
25 4 0.11
26 12 0.33
27 4 0.11
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (26 bp):
TTTTATATTTTTATTTCTATAATGAT
Found at i:72942199 original size:18 final size:20
Alignment explanation
Indices: 72942179--72942215 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
72942169 GTTTTCTATA
72942179 TTTT-TATTTTTATAATGAT
1 TTTTATATTTTTATAATGAT
72942198 TTTTATATTTTTATAATG
1 TTTTATATTTTTATAATG
72942216 TTTATACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTATATTTTTATAATGAT
Found at i:72943283 original size:3 final size:3
Alignment explanation
Indices: 72943275--72943318 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
72943265 CCCATCTTTT
72943275 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
72943319 TCTGCAACTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:72947431 original size:46 final size:48
Alignment explanation
Indices: 72947377--72947497 Score: 156
Period size: 46 Copynumber: 2.6 Consensus size: 48
72947367 TGAAATGTGT
** * *
72947377 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATAGACAA
* * *
72947423 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATAGACAA
*
72947471 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
72947498 GCGTCAGCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 37 0.57
47 1 0.02
48 27 0.42
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGATAGACAA
Found at i:72950459 original size:16 final size:16
Alignment explanation
Indices: 72950440--72950472 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
72950430 AGAAAATGAA
*
72950440 AGATACGAATAAAGTT
1 AGATACAAATAAAGTT
72950456 AGATACAAATAAAGTT
1 AGATACAAATAAAGTT
72950472 A
1 A
72950473 CCTTAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.24
Consensus pattern (16 bp):
AGATACAAATAAAGTT
Found at i:72954746 original size:69 final size:69
Alignment explanation
Indices: 72954630--72954766 Score: 231
Period size: 69 Copynumber: 2.0 Consensus size: 69
72954620 CAAGACTCTA
* *
72954630 TCAGGCCTACCACCACTACAAAACCTGCTGAAAATCGTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCGTACAGCCACTGTTATTCCTGTTTTGGAA
72954695 CCTG
66 CCTG
*
72954699 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATTC-TACAGCCACTGTTATTCTTGTTTTGGA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAA-TCGTACAGCCACTGTTATTCCTGTTTTGGA
72954763 ACCT
65 ACCT
72954767 ATTTTTCCTA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 62 0.97
70 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCGTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:72961781 original size:49 final size:49
Alignment explanation
Indices: 72961680--72961786 Score: 126
Period size: 49 Copynumber: 2.2 Consensus size: 49
72961670 CTGGTACGCA
* * *
72961680 TAGTAGCCTGCACTTAGTACTACACATATGACCAACAATCGGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACATGACCAACAATCGGATACACG
* * * * *
72961729 TAGTAGCTTGTACTTAGTACTACACACGTGACCTAAC-CTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACATGACC-AACAATCGGATACACG
72961778 TAGTAGCCT
1 TAGTAGCCT
72961787 ACTGATACAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
49 45 0.94
50 3 0.06
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACCAACAATCGGATACACG
Found at i:72972891 original size:40 final size:40
Alignment explanation
Indices: 72972822--72973046 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
72972812 AAACCAAGTA
* * *
72972822 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72972861 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
72972901 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72972941 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
* *
72972984 CCTTCGGGACTTTGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72973024 CCTTCGGAACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72973047 CATCCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 110 0.70
42 1 0.01
43 34 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72973023 original size:83 final size:80
Alignment explanation
Indices: 72972822--72973046 Score: 283
Period size: 83 Copynumber: 2.8 Consensus size: 80
72972812 AAACCAAGTA
* * * *
72972822 CCTTCGGGA-TTTAG-CCGGATATCGCAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATA
1 CCTTCGGGACTTT-GCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
72972885 GTAACTCGCACACATG
65 GCAACTCGCACACATG
* * * * *
72972901 CCTTCGGGTCTTAGCCCGGAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTTGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
72972966 CAACTACTCACACAAATG
66 CAACT-CGCACAC--ATG
* *
72972984 CCTTCGGGACTTTGCCCGGATATAGTAACTTGCACAAATGCCTTCGGAACTTAGCCCGGATAT
1 CCTTCGGGACTTTGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
72973047 CATCCGAATA
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
79 9 0.07
80 49 0.40
81 6 0.05
83 59 0.48
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTTGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
CAACTCGCACACATG
Found at i:72983434 original size:40 final size:40
Alignment explanation
Indices: 72983365--72983589 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
72983355 AAACCAAGTA
* * *
72983365 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72983404 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
72983444 CCTTCGGGTCTTAGCCCGAAAATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72983484 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
* *
72983527 CCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72983567 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
72983590 CATCCGAATA
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
39 12 0.08
40 110 0.70
42 1 0.01
43 35 0.22
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72983552 original size:83 final size:79
Alignment explanation
Indices: 72983365--72983589 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 79
72983355 AAACCAAGTA
* * * * *
72983365 CCTTCGGGATTTAGCCGGATATCG-CAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
72983429 TAACTCGCACACATG
65 AAACTCGCACAAATG
* * *
72983444 CCTTCGGGTCTTAGCCCGAAAATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCG-ATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
72983509 CAACTACTCGCACAAATG
65 -AA--ACTCGCACAAATG
* *
72983527 CCTTCGGGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCC-GATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
72983590 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
79 15 0.12
80 39 0.31
81 2 0.02
83 68 0.54
84 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGA
AACTCGCACAAATG
Found at i:73001709 original size:51 final size:51
Alignment explanation
Indices: 73001653--73001775 Score: 167
Period size: 50 Copynumber: 2.4 Consensus size: 51
73001643 ATGAGTCACT
**
73001653 TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGGGAGTTACA
1 TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGAAAGTTACA
* * * *
73001704 TAATGCATGCCATAATTT-ATGATGCAAACTTAACTTACATGAAAGTTACA
1 TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGAAAGTTACA
* *
73001754 TAATGCATGACTTTATTAAATG
1 TAATGCATGACTTAATTTAATG
73001776 CAGAACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 42 0.69
51 19 0.31
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (51 bp):
TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGAAAGTTACA
Found at i:73003751 original size:28 final size:26
Alignment explanation
Indices: 73003711--73003775 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 26
73003701 TGAAGTATTC
73003711 AAAAAAAAAGAAATACGAAATTTAAA
1 AAAAAAAAAGAAATACGAAATTTAAA
73003737 AAAAAAGAAGAGAAATACGAAATTTATAA
1 AAAAAA-AA-AGAAATACGAAATTTA-AA
73003766 AAAATAAAAA
1 AAAA-AAAAA
73003776 AGAAGTGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
26 6 0.17
27 2 0.06
28 17 0.49
29 8 0.23
30 2 0.06
ACGTcount: A:0.72, C:0.03, G:0.09, T:0.15
Consensus pattern (26 bp):
AAAAAAAAAGAAATACGAAATTTAAA
Found at i:73007812 original size:18 final size:19
Alignment explanation
Indices: 73007789--73007835 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 19
73007779 CCATTCAAGA
73007789 GAAAAAAGAAAAG-AAAAT
1 GAAAAAAGAAAAGAAAAAT
73007807 G-AAAAAGAAAAGAAAAAT
1 GAAAAAAGAAAAGAAAAAT
73007825 GAGAAAAAGAA
1 GA-AAAAAGAA
73007836 TGCAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.42
18 7 0.27
20 8 0.31
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (19 bp):
GAAAAAAGAAAAGAAAAAT
Found at i:73007832 original size:20 final size:19
Alignment explanation
Indices: 73007791--73007856 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
73007781 ATTCAAGAGA
73007791 AAAAAGAAAAG-AAAAT-G
1 AAAAAGAAAAGAAAAATAG
73007808 AAAAAGAAAAGAAAAATGAG
1 AAAAAGAAAAGAAAAAT-AG
*
73007828 AAAAAG-AATGCAAAAATAG
1 AAAAAGAAAAG-AAAAATAG
*
73007847 CAAAAGAAAA
1 AAAAAGAAAA
73007857 AAAGAACAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 11 0.27
18 5 0.12
19 10 0.24
20 15 0.37
ACGTcount: A:0.74, C:0.03, G:0.17, T:0.06
Consensus pattern (19 bp):
AAAAAGAAAAGAAAAATAG
Found at i:73007895 original size:21 final size:22
Alignment explanation
Indices: 73007848--73007899 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
73007838 CAAAAATAGC
73007848 AAAAGAAAAAAAGAACAAGTGAG
1 AAAAGAAAAAAAGAACAAG-GAG
*
73007871 AAAAGAAAAAGAAGAGCAA-GA-
1 AAAAGAAAAA-AAGAACAAGGAG
73007892 AAAAGAAA
1 AAAAGAAA
73007900 TTAGAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
22 2 0.07
23 10 0.37
24 7 0.26
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAAAAGAACAAGGAG
Done.