Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 224 of 290
Found at i:73014244 original size:46 final size:46
Alignment explanation
Indices: 73014140--73014364 Score: 177
Period size: 47 Copynumber: 4.8 Consensus size: 46
73014130 ACATTATGAG
*
73014140 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAA
1 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGATCAA
* * *
73014188 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-CATA
1 AGCCAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGATCA-A
* * ** * *
73014234 AGCCAATGTAAGACATGTCTAGGACATGCATCAGC-TACAAGATGAT
1 AGCCAATGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGATCAA
* * * * * * *
73014280 AGTCAGTGTAAGACCATGTCTGAGACATGGCATTGAC-TTGTGATCTA
1 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGATCAA
* * *
73014327 AGCCAGTGTAAGACCATGTCTAGGACGTGGCATCGGCA
1 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATCGGCA
73014365 CCTTACCCAT
Statistics
Matches: 140, Mismatches: 31, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
45 2 0.01
46 60 0.43
47 61 0.44
48 17 0.12
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGCCAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGATCAA
Found at i:73014329 original size:93 final size:94
Alignment explanation
Indices: 73014140--73014360 Score: 256
Period size: 93 Copynumber: 2.4 Consensus size: 94
73014130 ACATTATGAG
* * **
73014140 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAAAGCTAGTGTAAGACATG
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCAGCATCAAGATGAAAGCTAGTGTAAGACATG
* *
73014205 TCTGGGACATGCATCGGCCTTGAGACATA
66 TCTGAGACATGCATCGGACTTGAGACATA
*
73014234 AGCCAATGTAAGA-CATGTCTAGGACAT-GCATCAGC-TACAAGATGATAG-TCAGTGTAAGACC
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATCAGCAT-CAAGATGAAAGCT-AGTGTAAGA-C
* *
73014295 ATGTCTGAGACATGGCAT-TGACTTGTGATC-TA
63 ATGTCTGAGACAT-GCATCGGACTTGAGA-CATA
* *
73014327 AGCCAGTGTAAGACCATGTCTAGGACGTGGCATC
1 AGCCAATGTAAGACCATGTCTAGGACATGGCATC
73014361 GGCACCTTAC
Statistics
Matches: 109, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
91 2 0.02
92 24 0.22
93 47 0.43
94 31 0.28
95 5 0.05
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
AGCCAATGTAAGACCATGTCTAGGACATGGCATCAGCATCAAGATGAAAGCTAGTGTAAGACATG
TCTGAGACATGCATCGGACTTGAGACATA
Found at i:73017327 original size:46 final size:46
Alignment explanation
Indices: 73017277--73017448 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73017267 TGAGCATCCA
73017277 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
73017323 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
73017370 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
73017416 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73017449 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:73017429 original size:93 final size:93
Alignment explanation
Indices: 73017270--73017441 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73017260 GGATGGTTGA
* *
73017270 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73017335 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
73017363 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73017428 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73017442 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73028784 original size:40 final size:39
Alignment explanation
Indices: 73028720--73028931 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
73028710 TCTTCGGAAT
* *
73028720 TTAG-CCGGATATAACTACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
73028759 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
73028799 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
73028839 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
73028879 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
*
73028919 TTAACCCGGATAT
1 TTAGCCCGGATAT
73028932 CATTCAAATG
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
39 8 0.05
40 133 0.90
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:73028847 original size:80 final size:80
Alignment explanation
Indices: 73028739--73028931 Score: 350
Period size: 80 Copynumber: 2.4 Consensus size: 80
73028729 TATAACTACA
* * *
73028739 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
73028804 CCGGATAAAATCACT
66 CCGGATAAAATCACT
*
73028819 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
73028884 CCGGATAAAATCACT
66 CCGGATAAAATCACT
73028899 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
1 AGCACAATTGCCTTCGGGTCTTAACCCGGATAT
73028932 CATTCAAATG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 108 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
AGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATAAAATCACT
Found at i:73036850 original size:40 final size:39
Alignment explanation
Indices: 73036786--73036997 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
73036776 TCTTCGGAAT
* *
73036786 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
73036825 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
73036865 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
73036905 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
73036945 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
73036985 TTAGCCCGGATAT
1 TTAGCCCGGATAT
73036998 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:73036913 original size:80 final size:80
Alignment explanation
Indices: 73036786--73036997 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
73036776 TCTTCGGAAT
* * * * *
73036786 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
73036850 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
73036865 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
73036930 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
73036945 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73036998 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:73039482 original size:46 final size:46
Alignment explanation
Indices: 73039430--73039605 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
73039420 TATTTGGGCA
*
73039430 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
* * * *
73039476 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAA--A--CG
* * *
73039523 TCTGAGCTCGTTTAGTTGAGT-TCGAGTTCACTTATGGATGCAAAC-
1 TCCGAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCAAACG
* * *
73039568 ACCCAAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCTGAGTTCACTTATGG
73039606 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 57 0.55
47 27 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
Found at i:73039541 original size:93 final size:93
Alignment explanation
Indices: 73039426--73039597 Score: 249
Period size: 93 Copynumber: 1.8 Consensus size: 93
73039416 CAGATATTTG
* * *
73039426 GGCATCCGAACTCGTTGAGTTGAG-TCTGAGTTCACTTATGGATGCGAACGTCCGAA-CTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCAAAC-ACCCAAGCTCGTTG
73039489 AGTTGAGTCCGAGTTCATGAGATGTAACTA
64 AGTTGAGTCCGAGTTCATGAGATGTAACTA
* * *
73039519 GGCATCTGAGCTCGTTTAGTTGAGTTCGAGTTCACTTATGGATGCAAACACCCAAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACACCCAAGCTCGTTGAG
*
73039584 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
73039598 GCTTATGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 4 0.06
93 64 0.91
94 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACACCCAAGCTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:73043613 original size:46 final size:46
Alignment explanation
Indices: 73043561--73043732 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
73043551 TGGGCATCCG
*
73043561 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCA
1 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCA
* * * * * * *
73043607 AACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAT-CTAAGCATCCA
1 AACTCATTGAGTTGAGTCCGAGTTCACT--TATGGATGC-AAACGTTCA
* * * * *
73043654 AGCTCATTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGCTCG
1 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCA
* *
73043700 AGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCATTGAGTTGAGTCCGAGTTCACTTATGG
73043733 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.64
47 34 0.34
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCA
Found at i:73043713 original size:93 final size:93
Alignment explanation
Indices: 73043554--73043725 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
73043544 AGATATTTGG
* * *
73043554 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTTCAAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCAAACTCATTGAGT
73043619 TGAGTCCGAGTTCGTGAGATGTATCTAA
66 TGAGTCCGAGTTCGTGAGATGTATCTAA
* * * *
73043647 GCATCC-AAGCTCATTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGCTCGAGCTCATTGAG
1 GCATCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCAAACTCATTGAG
73043711 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
73043726 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTATCTAA
Found at i:73045357 original size:51 final size:51
Alignment explanation
Indices: 73045294--73045424 Score: 201
Period size: 50 Copynumber: 2.6 Consensus size: 51
73045284 ATGAACAAAT
*
73045294 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* * *
73045345 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAACTTACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* *
73045395 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
73045425 CAAAACCCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 45 0.63
51 26 0.37
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:73045491 original size:39 final size:39
Alignment explanation
Indices: 73045432--73045517 Score: 127
Period size: 39 Copynumber: 2.2 Consensus size: 39
73045422 ATGCAAAACC
* * * *
73045432 CATATTAATGTTGTTCAAACTATGATATAATTAAAGACT
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
73045471 CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
*
73045510 CAAACTAA
1 CATACTAA
73045518 ACTAACTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.31
Consensus pattern (39 bp):
CATACTAATGATGTTCAAACTATGACATAATTAAAGACA
Found at i:73049305 original size:37 final size:37
Alignment explanation
Indices: 73049255--73049333 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
73049245 TTATTACGAA
* *
73049255 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
73049292 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
73049329 GTCTT
1 GTCTT
73049334 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:73049530 original size:47 final size:47
Alignment explanation
Indices: 73049452--73050039 Score: 978
Period size: 47 Copynumber: 12.5 Consensus size: 47
73049442 CCCTTCGGGA
* * * * * * *
73049452 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73049499 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73049546 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73049593 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73049640 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73049687 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73049734 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73049783 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73049830 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73049877 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73049924 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73049971 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73050018 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
73050040 TTGGCTGAAT
Statistics
Matches: 516, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 470 0.91
49 46 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73054599 original size:46 final size:46
Alignment explanation
Indices: 73054549--73054721 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73054539 TGGTTGAGCA
*
73054549 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
73054595 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
73054642 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
73054688 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73054722 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:73054705 original size:93 final size:93
Alignment explanation
Indices: 73054546--73054716 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73054536 GGATGGTTGA
* *
73054546 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
73054611 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
73054639 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
73054704 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73054717 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73054982 original size:19 final size:20
Alignment explanation
Indices: 73054945--73054982 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73054935 ATAAGGTGGT
73054945 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73054965 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73054983 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73062168 original size:129 final size:132
Alignment explanation
Indices: 73061994--73062281 Score: 312
Period size: 132 Copynumber: 2.2 Consensus size: 132
73061984 AAAAAAAACT
* * * *
73061994 CAACCCAACACGATAGGGCACGATTCTCAAATCGCCAAACATCGAACA-T-CTTTTGTTTTGAA-
1 CAACCCAACACGATAGGGCACGATTCCCAAATCGCCAAACATCGAACATTGCCTTCGTTTTAAAG
* * * *
73062056 AAGTTTTTAATAGACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTCAGCAAACGAGAAAT
66 AACTTTTTAAAAGACATAAGTGAAAACCTAAAGGAATATTCGATTATTTTCAGCAAACGAGAAAT
73062121 CA
131 CA
* * * * * *
73062123 CAACCCAACACGATAGGGCATGATTCCCGAATTGTCAAACGTCGAATATTGCCTTCGTTTTAAAG
1 CAACCCAACACGATAGGGCACGATTCCCAAATCGCCAAACATCGAACATTGCCTTCGTTTTAAAG
* *** * * * *
73062188 AACTTTTTAAAAGGCATAAGTGAAATTTTGAAGGGATATTCGATTATTTTGAGCAAACGCGAAAT
66 AACTTTTTAAAAGACATAAGTGAAAACCTAAAGGAATATTCGATTATTTTCAGCAAACGAGAAAT
**
73062253 TG
131 CA
* * *
73062255 CAACCCAACACGTTAGAGCACTATTCC
1 CAACCCAACACGATAGGGCACGATTCC
73062282 GCGATCGAAT
Statistics
Matches: 128, Mismatches: 28, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
129 41 0.32
130 1 0.01
131 10 0.08
132 76 0.59
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (132 bp):
CAACCCAACACGATAGGGCACGATTCCCAAATCGCCAAACATCGAACATTGCCTTCGTTTTAAAG
AACTTTTTAAAAGACATAAGTGAAAACCTAAAGGAATATTCGATTATTTTCAGCAAACGAGAAAT
CA
Found at i:73065143 original size:131 final size:131
Alignment explanation
Indices: 73064735--73065536 Score: 1297
Period size: 131 Copynumber: 6.1 Consensus size: 131
73064725 GCGGCTTCGA
* * * *
73064735 GGAGATAAGACCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGA-TGGTGGCTT
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACT--T-GCTT
*
73064799 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTTCCCCACTGCAACT
63 AAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACT
*
73064864 TTAG
128 TCAG
*
73064868 GGAGAC-AGAATCTACAATATTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGACTTGCTTAA
1 GGAGACAAG-ATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAA
* * *
73064932 ATCTGCTT--CTGCAACTTCAAGAAACCAAGATTCGTCGCCTTCGATTTGCCCCACTGCAACTTC
65 ATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTC
73064995 AG
130 AG
73064997 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
*
73065062 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCTTCGTCTTCGATTTGCCCCACTGCAACTTCA
66 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
73065127 G
131 G
* *
73065128 GGAGACAAGATCTACAATATTCAACCTACTCCACTACATCTTTAGGGAGCTAGGATTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* * * *
73065193 TCTACTTCATTGTAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTCGCCCCACTGCAACTTCA
66 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
73065258 G
131 G
* *
73065259 GGAGACAAGATCTACAATATTTAGCCTATTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* * ** *
73065324 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATCCATCGTCTTCGATTCACCCCACTGCATCTTCA
66 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
73065389 G
131 G
*
73065390 GGAGACAAGATCTACAATATTCAACCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
1 GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
* *
73065455 TCTGCTTCACTGCAACTTCTGGAAGCCAAGATTCGTCGTCTTCGATTTTCCCCACTGCAACTTCA
66 TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
73065520 G
131 G
73065521 GGAGACAAGATCTACA
1 GGAGACAAGATCTACA
73065537 TTCTGTTTCG
Statistics
Matches: 624, Mismatches: 40, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
129 120 0.19
130 2 0.00
131 449 0.72
132 3 0.00
133 49 0.08
134 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (131 bp):
GGAGACAAGATCTACAATATTCAGCCTACTCCACTACATCTTTAGGGAGCTAGGACTTGCTTAAA
TCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCA
G
Found at i:73065162 original size:45 final size:44
Alignment explanation
Indices: 73064982--73065176 Score: 103
Period size: 45 Copynumber: 4.4 Consensus size: 44
73064972 TCGATTTGCC
*
73064982 CCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACT
1 CCACTGCAACTTCAGGGAGACAAGATCTAC-ATATTCAACCTACT
* * * * * * * *
73065027 CCACTACATCTTTAGGGAG-CTAGGA-CT---TGCTTAAATCTGCT
1 CCACTGCAACTTCAGGGAGAC-AAGATCTACAT-ATTCAACCTACT
* * * * * * * ** * *
73065068 TCACTGCAACTTCAGGAAGCCAAGATTCTTCGTCTTCGATTTGCC
1 CCACTGCAACTTCAGGGAGACAAGA-TCTACATATTCAACCTACT
73065113 CCACTGCAACTTCAGGGAGACAAGATCTACAATATTCAACCTACT
1 CCACTGCAACTTCAGGGAGACAAGATCTAC-ATATTCAACCTACT
* * *
73065158 CCACTACATCTTTAGGGAG
1 CCACTGCAACTTCAGGGAG
73065177 CTAGGATTTG
Statistics
Matches: 108, Mismatches: 33, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
40 1 0.01
41 24 0.22
42 1 0.01
43 2 0.02
44 7 0.06
45 72 0.67
46 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGACAAGATCTACATATTCAACCTACT
Found at i:73065659 original size:64 final size:64
Alignment explanation
Indices: 73065558--73065681 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 64
73065548 AGGCCTATGC
* * *
73065558 TTATGCCAAATAATTAAGATGCTATGATCAACATGAATCAATTGTTCCTAACTAGATGTGATGT
1 TTATGCCAAATAATTAAGATGCTATGATCAACATGAATCAAATGCTCCTAACTAAATGTGATGT
*
73065622 TTATGTCAAATAATT-AGAATGCTATGATCGAA-ATGAATCAAATGCTCCTAACTAAATGTG
1 TTATGCCAAATAATTAAG-ATGCTATGATC-AACATGAATCAAATGCTCCTAACTAAATGTG
73065682 TTATGAATGA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
63 2 0.04
64 50 0.93
65 2 0.04
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (64 bp):
TTATGCCAAATAATTAAGATGCTATGATCAACATGAATCAAATGCTCCTAACTAAATGTGATGT
Found at i:73066780 original size:3 final size:3
Alignment explanation
Indices: 73066772--73066806 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
73066762 GCCTCTCCTT
* *
73066772 TTC TTC TTC TTT TTC TTT TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
73066807 TCTTTTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TTC
Found at i:73066787 original size:6 final size:6
Alignment explanation
Indices: 73066770--73066819 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
73066760 TGGCCTCTCC
* * * *
73066770 TTTTCT TCTTCT TTTTCT TTTTCT TCTTCT TCTTC- -TTTCT TTTTGT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
73066816 TTTT
1 TTTT
73066820 TTTAAGGTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
4 3 0.08
6 34 0.92
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTCT
Found at i:73066793 original size:18 final size:18
Alignment explanation
Indices: 73066770--73066807 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
73066760 TGGCCTCTCC
*
73066770 TTTTCTTCTTCTTTTTCT
1 TTTTCTTCTTCTTCTTCT
73066788 TTTTCTTCTTCTTCTTCT
1 TTTTCTTCTTCTTCTTCT
73066806 TT
1 TT
73066808 CTTTTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTCTTCTTCTTCTTCT
Found at i:73069852 original size:37 final size:38
Alignment explanation
Indices: 73069802--73069881 Score: 110
Period size: 38 Copynumber: 2.1 Consensus size: 38
73069792 TTATTACGAA
* *
73069802 GTCTTACCCGGAC-ATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAATTC-CCACACGAAGTCATCGG
*
73069839 GTCTTACCCGGACAAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
73069877 GTCTT
1 GTCTT
73069882 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.34
38 23 0.61
39 2 0.05
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (38 bp):
GTCTTACCCGGACAAAAATTCCCACACGAAGTCATCGG
Found at i:73070078 original size:47 final size:47
Alignment explanation
Indices: 73070000--73070324 Score: 466
Period size: 47 Copynumber: 7.0 Consensus size: 47
73069990 CCCTTCGGGA
* * * * * * *
73070000 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
73070047 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73070094 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73070141 CTTATCACATATATACACTTTCACATTCATCACATCGG-C--TA---
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73070182 -TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73070228 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73070275 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73070324 C
1 C
73070325 CTTACTATTC
Statistics
Matches: 252, Mismatches: 17, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
40 36 0.14
43 2 0.01
44 2 0.01
46 1 0.00
47 172 0.68
49 39 0.15
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73070210 original size:134 final size:135
Alignment explanation
Indices: 73070051--73070320 Score: 488
Period size: 134 Copynumber: 2.0 Consensus size: 135
73070041 CTCGGCCCCG
* *
73070051 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
73070116 ACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGC
*
73070180 TATTA
131 CATTA
*
73070185 TCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
73070250 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
66 ACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGG
73070315 CCATTA
130 CCATTA
73070321 GGCCCTTACT
Statistics
Matches: 130, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
134 95 0.73
136 35 0.27
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (135 bp):
TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGC
CATTA
Found at i:73074094 original size:40 final size:40
Alignment explanation
Indices: 73074030--73074372 Score: 426
Period size: 40 Copynumber: 8.6 Consensus size: 40
73074020 CCAGCATGAT
* * *
73074030 TGCTCTTCGGGAATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGG-ACTTAGCCCGGATACATCACTAGCACGAA
*
73074071 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
73074111 TGCTCCTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73074151 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
73074191 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
73074231 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
73074271 TGCTCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* **
73074311 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
73074351 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
73074373 CATCATTCGA
Statistics
Matches: 271, Mismatches: 26, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
39 23 0.08
40 230 0.85
41 18 0.07
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:73074181 original size:120 final size:120
Alignment explanation
Indices: 73074022--73074372 Score: 485
Period size: 120 Copynumber: 2.9 Consensus size: 120
73074012 ACACGTCACC
* * *
73074022 AGCATGATTGCTCTTCGGGAATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTA
1 AGCATGAATGCTCTTCGGG-ACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTA
*
73074087 GCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATCGCT
65 GCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
* * *
73074143 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
73074208 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
66 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
* * * * *
73074263 AGCATGAATGCTCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTA
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTA
* ** *
73074326 GTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
65 GCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
73074373 CATCATTCGA
Statistics
Matches: 206, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
119 53 0.26
120 130 0.63
121 23 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
Found at i:73074719 original size:29 final size:29
Alignment explanation
Indices: 73074680--73074758 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73074670 CTTAATAATC
*
73074680 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73074710 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73074739 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73074759 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73074801 original size:43 final size:43
Alignment explanation
Indices: 73074740--73074842 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
73074730 TGCATTTCAA
73074740 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73074783 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73074826 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
73074843 TAAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:73076742 original size:37 final size:37
Alignment explanation
Indices: 73076692--73076770 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
73076682 TTATTACGAA
* *
73076692 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
73076729 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
73076766 GTCTT
1 GTCTT
73076771 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:73076967 original size:47 final size:47
Alignment explanation
Indices: 73076889--73077358 Score: 786
Period size: 47 Copynumber: 10.1 Consensus size: 47
73076879 CCCTTCGGGA
* * * * * * *
73076889 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73076936 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73076983 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077030 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077077 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73077124 CTTATCACATATATACACTTTCACATTCATCACATCGG-C--TAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077167 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077214 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077261 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73077308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73077355 CTTA
1 CTTA
73077359 CTATCATTTC
Statistics
Matches: 402, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
43 37 0.09
44 5 0.01
46 4 0.01
47 356 0.89
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73077230 original size:184 final size:186
Alignment explanation
Indices: 73076889--73077358 Score: 764
Period size: 184 Copynumber: 2.5 Consensus size: 186
73076879 CCCTTCGGGA
* * * * * * * * *
73076889 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
73076954 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGG-CA-TAGGCCTTATCACACATATACACTTTCACATTCATCACATC
* *
73077019 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077077 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73077142 TTTCACATTCATCACATCGGC-TAGG-CTTATCACACATATACACTTTCACATTCATCACATCGG
66 TTTCACATTCATCACATCGGCATAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
73077205 CCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73077261 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73077326 TTTCACATTCATCACATCGGCCATTAGGCCTTA
66 TTTCACATTCATCACATCGG-CA-TAGGCCTTA
73077359 CTATCATTTC
Statistics
Matches: 263, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
184 174 0.66
185 5 0.02
187 5 0.02
188 79 0.30
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (186 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCATAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73077354 original size:231 final size:231
Alignment explanation
Indices: 73076940--73077358 Score: 793
Period size: 231 Copynumber: 1.8 Consensus size: 231
73076930 CTCGGCCCTG
* *
73076940 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
* *
73077005 ACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
*
73077070 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
131 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
73077135 TATACACTTTCACATTCATCACATCGGCTAGGCTTA
196 TATACACTTTCACATTCATCACATCGGCTAGGCTTA
73077171 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
73077236 ACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
73077301 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
131 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
73077359 CTATCATTTC
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
231 183 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (231 bp):
TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
TATACACTTTCACATTCATCACATCGGCTAGGCTTA
Found at i:73082195 original size:587 final size:587
Alignment explanation
Indices: 73081083--73082259 Score: 2131
Period size: 587 Copynumber: 2.0 Consensus size: 587
73081073 CTCTACTAGC
73081083 TCCTTTTTGCTTGATCCAGGCCACAAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAGAAA
1 TCCTTTTTGCTTGATCCAGGCCACAAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAGAAA
73081148 GTCAGGACGCGACGACTTTTGGATAATCTTTATCAGCTTGAATCCTTAGGTAAAGTTTGGTTTTC
66 GTCAGGACGCGACGACTTTTGGATAATCTTTATCAGCTTGAATCCTTAGGTAAAGTTTGGTTTTC
73081213 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
131 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
73081278 ATCCGCGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
196 ATCCGCGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
*
73081343 CAACACCTCCTTTCTATAATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
261 CAACACCTCATTTCTATAATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
* *
73081408 TAGTATAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAGGGGTTCAGAGTGGCTC
326 TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCAGAGTGGCTC
*
73081473 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAGGGTACCTAAGTC
391 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAGGGTACCTAAGCC
* * * *
73081538 AGCAGATTCCTCGATCCTCACCCATTATAGGCTCATACAGATCGAGTTCAGTTCATGGGAATACA
456 AGCAGATTCCTAGATCCTCACCCATTATAGGCTCATACAGATCGAATTCAATTCAGGGGAATACA
* *
73081603 TTTCCCTATAACCATGCGGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGGAAGT
521 TTTCCCTATAACCATGCAGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGAAAGT
73081668 AA
586 AA
*
73081670 TCCTTTTTGCTTGATCCAGGCCACGAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAGAAA
1 TCCTTTTTGCTTGATCCAGGCCACAAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAGAAA
* *
73081735 GTCGGGACGCGACGGCTTTTGGATAATCTTTATCAGCTTGAATCCTTAGGTAAAGTTTGGTTTTC
66 GTCAGGACGCGACGACTTTTGGATAATCTTTATCAGCTTGAATCCTTAGGTAAAGTTTGGTTTTC
73081800 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
131 CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
* *
73081865 ATCCGCGTTATTAAGAAATTCGTTTTCTTATGACAAACTGTTCTATTTAGCAATCGAGTATGAAT
196 ATCCGCGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
* *
73081930 CAACACCTCATTTCTATGATGATGTAATGCAATGCATTCATGAACAAACAAAAAACAAAACACGT
261 CAACACCTCATTTCTATAATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
*
73081995 TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCGGAGTGGCTC
326 TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCAGAGTGGCTC
*
73082060 TACCTAGGGTAACCTCCTAGGTTTCTCTATATGTGGCTCGGTTCTAGAGTAAGGGTACCTGAA-C
391 TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAGGGTACCT-AAGC
* *
73082124 CAGCAGATTCCTAGATCCTCACCCTTTATAGGCTCATACGGATCGAATTCAATTCAGGGGAATAC
455 CAGCAGATTCCTAGATCCTCACCCATTATAGGCTCATACAGATCGAATTCAATTCAGGGGAATAC
* *
73082189 ATTTCCCTATGACCATGCAGAGATGAAAATCTCACGAAATCATAGGTACGGATGTATCCCGAAAG
520 ATTTCCCTATAACCATGCAGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGAAAG
73082254 TAA
585 TAA
73082257 TCC
1 TCC
73082260 ACTAGCCCAT
Statistics
Matches: 566, Mismatches: 23, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
587 564 1.00
588 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (587 bp):
TCCTTTTTGCTTGATCCAGGCCACAAATTACTATCCTCGCAATGTTGATTAGCTCCTTTAAGAAA
GTCAGGACGCGACGACTTTTGGATAATCTTTATCAGCTTGAATCCTTAGGTAAAGTTTGGTTTTC
CTCCAAGAACTGTTAGCCTTCTTCTGTCGTGTTCACTTGGACCAAATTCGGACAACCGTATTGTA
ATCCGCGTTATTAAGAAATTCATTTTCTTATAACAAACTGTTCTATTTAGCAATCGAGTATGAAT
CAACACCTCATTTCTATAATGATGTAATGCAATGCAGTCATGAACAAACAAAAAACAAAACACGT
TAGTACAGAAATAAATAACCAACAAAGTACCTAATCGGGTGATCACTAAGGGTTCAGAGTGGCTC
TACCTAGGGTAACCTCCTAGGTCTCTCTATATGTGGCTCGGTTCTAGAGTAAGGGTACCTAAGCC
AGCAGATTCCTAGATCCTCACCCATTATAGGCTCATACAGATCGAATTCAATTCAGGGGAATACA
TTTCCCTATAACCATGCAGAGATGAAAATCTCACGAAATCATAGGTACGAATGTATCCCGAAAGT
AA
Found at i:73083425 original size:132 final size:129
Alignment explanation
Indices: 73083009--73083475 Score: 413
Period size: 132 Copynumber: 3.5 Consensus size: 129
73082999 TATAAAATAC
* * *
73083009 GAGTGAAATTTCGAA-GAGATATTCGATTATTTTGACCAAACGGGAAATTGCTACCCAGCACGAT
1 GAGTGAAATTTCGAAGGA-ATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGAT
* * *
73083073 AGGGTACT-ATTCCCCGAATTGCCAAACATCGAACACTTCTTTCGTTTTAAAGGACTTTTAGAAA
65 AGGGCA-TGATT-CCCGAATTGCCAAACATCGAACA-TTCTTTCGTTTTAAAGAATTTTTA-AAA
*
73083137 ACGT
126 ACAT
* * * * * * * *
73083141 GAATGAAATTTCGAAGGGATCTTCGATTGTTTAGACCAAATGAAAAAAAAAGCGCAACCCAGCAC
1 GAGTGAAATTTCGAAGGAATATTCGATTATTTTGACCAAACG----AGAAATCGCAACCCAGCAC
* * * * * * *
73083206 GATAGGGCACGATTCTCAAATCGCCAAGCATCGAACATCCTTT-GTTTTGAAA-AGTTTTTAATA
62 GATAGGGCATGATTCCCGAATTGCCAAACATCGAACATTCTTTCGTTTT-AAAGAATTTTTAA-A
73083269 AACAT
125 AACAT
** * * * *
73083274 GAGTGAAA-ACCTAAAGGAATATTCGATTATTTTGAGCAAATGAGAAATCACAACCCAGCACGAT
1 GAGTGAAATTTC-GAAGGAATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGAT
* ** * *
73083338 AGGGCATGATTCCCGAATTGTCAAACGCCGAATATTGCTTTCGTTTTAAAGAATTTTTTAAAAGG
65 AGGGCATGATTCCCGAATTGCCAAACATCGAACATT-CTTTCGTTTTAAAGAA-TTTTTAAAA-A
73083403 CAT
127 CAT
* * * * * *
73083406 GAGTGAAATTTTGAAGGAATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTA
1 GAGTGAAATTTCGAAGGAATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGATA
73083471 GGGCA
66 GGGCA
73083476 CTATTCCGTG
Statistics
Matches: 264, Mismatches: 56, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
129 45 0.17
130 7 0.03
131 8 0.03
132 105 0.40
133 47 0.18
134 8 0.03
135 19 0.07
136 25 0.09
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (129 bp):
GAGTGAAATTTCGAAGGAATATTCGATTATTTTGACCAAACGAGAAATCGCAACCCAGCACGATA
GGGCATGATTCCCGAATTGCCAAACATCGAACATTCTTTCGTTTTAAAGAATTTTTAAAAACAT
Found at i:73084607 original size:19 final size:19
Alignment explanation
Indices: 73084580--73084626 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
73084570 TTAATACAAA
* * *
73084580 GTTTAAAATAACTAAAATG
1 GTTTTAAATAAATAAAAAG
73084599 GTTTTAAATAAATAAAAAG
1 GTTTTAAATAAATAAAAAG
73084618 G-TTTAAATA
1 GTTTTAAATA
73084627 TATACGAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.34
Consensus pattern (19 bp):
GTTTTAAATAAATAAAAAG
Found at i:73093706 original size:20 final size:20
Alignment explanation
Indices: 73093681--73093720 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
73093671 ACAGCATTGA
*
73093681 ATAGCTAATCTTTAGGGATT
1 ATAGCTAATCTTTAGAGATT
* *
73093701 ATAGCTGATTTTTAGAGATT
1 ATAGCTAATCTTTAGAGATT
73093721 TTAATTACAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.42
Consensus pattern (20 bp):
ATAGCTAATCTTTAGAGATT
Found at i:73099835 original size:11 final size:11
Alignment explanation
Indices: 73099819--73099844 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73099809 TTGACATTAA
73099819 TTAAAAGTTTT
1 TTAAAAGTTTT
73099830 TTAAAAGTTTT
1 TTAAAAGTTTT
73099841 TTAA
1 TTAA
73099845 CTTCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (11 bp):
TTAAAAGTTTT
Found at i:73105665 original size:42 final size:43
Alignment explanation
Indices: 73105582--73105683 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
73105572 TCTCGGACGT
* ** *
73105582 GGTCTTACATGTAATTCAATATCGATACCTTTGTCCCAGACAG
1 GGTCTTACATGTAAATCAATATCGATACCGATGTCCCAGACAC
*
73105625 GGTCTTACATG-AAATCAGATA-CGATGCCGATGTCCCAGACAC
1 GGTCTTACATGTAAATCA-ATATCGATACCGATGTCCCAGACAC
* *
73105667 GGCCTTATATGTAAATC
1 GGTCTTACATGTAAATC
73105684 TCAATCGAGG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 31 0.62
43 19 0.38
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATACCGATGTCCCAGACAC
Found at i:73122063 original size:31 final size:31
Alignment explanation
Indices: 73122006--73122067 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
73121996 TGTGATAAAA
**
73122006 GAAGCAACTTTGAATGCATTTACAGAGAAAG
1 GAAGCAACTTTGAACACATTTACAGAGAAAG
* *
73122037 GAAGCAACTTTGAACACGTTTGCAGAGAAAG
1 GAAGCAACTTTGAACACATTTACAGAGAAAG
73122068 TGTGAAGGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (31 bp):
GAAGCAACTTTGAACACATTTACAGAGAAAG
Found at i:73122651 original size:33 final size:33
Alignment explanation
Indices: 73122572--73122685 Score: 119
Period size: 31 Copynumber: 3.5 Consensus size: 33
73122562 GATATATATT
* *
73122572 ATATTTAAATAATTTAATATAATAATAAATG--
1 ATATTCAAATAATTTAATATAATAATACATGAA
* * * *
73122603 GTTTTTAAATAATTTAATATAATGATACATGAA
1 ATATTCAAATAATTTAATATAATAATACATGAA
* *
73122636 ATATTCAAATAATTTAATATAACAATACATTAA
1 ATATTCAAATAATTTAATATAATAATACATGAA
73122669 ATA--CAAATTAATTTAAT
1 ATATTCAAA-TAATTTAAT
73122686 TTTTATATAT
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
31 31 0.44
32 9 0.13
33 30 0.43
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (33 bp):
ATATTCAAATAATTTAATATAATAATACATGAA
Found at i:73126741 original size:41 final size:41
Alignment explanation
Indices: 73126613--73126728 Score: 187
Period size: 41 Copynumber: 2.8 Consensus size: 41
73126603 CCCGAATCAG
* * *
73126613 TGAAAAGGGTGAAAAGGACGTTATCCAGAAAGGATATTGAA
1 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
73126654 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
1 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
* *
73126695 TGAAAAGGTTGGAAAGGATGTTATCCAAAAAGGA
1 TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGA
73126729 CAACAAATGA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.45, C:0.06, G:0.28, T:0.22
Consensus pattern (41 bp):
TGAAAAGGTTGAAAAGGATGTTATCCAGAAAGGATATTAAA
Found at i:73134453 original size:243 final size:242
Alignment explanation
Indices: 73134005--73134481 Score: 794
Period size: 243 Copynumber: 2.0 Consensus size: 242
73133995 ACAATGTCAC
* *
73134005 GACACACCAAGTCTTGTGTCTGACATTGAGGGCAATATGTTAAGTTTCTTGATGTCTTCAGGGGT
1 GACACACCAAGTCCTGTGTCTGACATTGAGGGCAATATGCTAAGTTTCTTGATGTCTTCAGGGGT
73134070 ATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTCT
66 ATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTCT
* *
73134135 CCTTAAGTTGCGAAATCCCATGCTCTGTGTTGCAACCTAGCAACCATTATTGAGTTAATATGCCT
131 CCTTAAGTTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACCATTATAGAGTTAATATGCCT
73134200 TCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTCGATGTCGT
196 TCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTCGATGTCGT
*
73134247 GACACACCAAGTCCTGTGTCGTGACATTGAGGGCAATATGCTAAGTTTCTTGTTGTCTTCAGGGG
1 GACACACCAAGTCCTGTGTC-TGACATTGAGGGCAATATGCTAAGTTTCTTGATGTCTTCAGGGG
* * * **
73134312 TATTTCATGACATCCTTAGGCTGTGTCATGATATTGAAGGTAGTCTTGGATTTTTCTGATTCTTC
65 TATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTC
* * * *
73134377 TTCC-TATGTTGTGACATCCCATGCTCCGTGTTGCAATCTAGCAACCATTATAGAGTTAATATGC
130 -TCCTTAAGTTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACCATTATAGAGTTAATATGC
*
73134441 CTTCTAATGGTCTCCTGCACATTCATAAAGTATATTAGCTC
194 CTTCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTC
73134482 AACCTTAGGC
Statistics
Matches: 218, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
242 19 0.09
243 196 0.90
244 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (242 bp):
GACACACCAAGTCCTGTGTCTGACATTGAGGGCAATATGCTAAGTTTCTTGATGTCTTCAGGGGT
ATTTCACGACATCCTTAGGCTGTGTCATGACATTAAAGGTAGTCTTGGATTTTTCAAATTCTTCT
CCTTAAGTTGCGAAATCCCATGCTCCGTGTTGCAACCTAGCAACCATTATAGAGTTAATATGCCT
TCTAATGGTCTCCTGCACACTCATAAAGTATATTAGCTCGATGTCGT
Found at i:73138169 original size:49 final size:49
Alignment explanation
Indices: 73138103--73138338 Score: 289
Period size: 49 Copynumber: 4.8 Consensus size: 49
73138093 TAGCCAAAGC
*
73138103 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
73138152 TATCCGGTACACTTAGTAGCCTGCACTTAGTACTACACACGTGAACTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCG-ACCAAT
* * * *
73138202 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACTATG-GA--AGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACT--ACAC-ATGCGACCAAT
* *
73138251 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
73138300 TATCTGGTACACATAGTAGCCTACACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
73138339 CATGACCTCA
Statistics
Matches: 157, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
46 3 0.02
47 6 0.04
49 106 0.68
50 34 0.22
51 1 0.01
52 5 0.03
53 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:73138275 original size:99 final size:99
Alignment explanation
Indices: 73138104--73138342 Score: 297
Period size: 99 Copynumber: 2.4 Consensus size: 99
73138094 AGCCAAAGCT
* * *
73138104 ATCTGGTACGCATAGTAGCCTGCACTTAGTACT--ACACATGCGACCAATTATCCGGTACACTTA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGCGA-CAATTATCCGGTACACATA
* *
73138167 GTAGCCTGCACTTAGTACTACACACGTGAACTAACC
65 GTAGCCTGCACTTAGTACTACACACGCG-ACCAACC
* * * *
73138203 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACTATG-GA-AGTTATCGGGTACGCATA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACAC-ATGCGACAATTATCCGGTACACATA
* **
73138266 GTAGCCTGCACTTAGTACTACACATGCGACCAATT
65 GTAGCCTGCACTTAGTACTACACACGCGACCAACC
* *
73138301 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACACATG
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATG
73138343 ACCTCACAAT
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
97 3 0.02
98 40 0.33
99 70 0.57
101 6 0.05
102 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACATGCGACAATTATCCGGTACACATAG
TAGCCTGCACTTAGTACTACACACGCGACCAACC
Found at i:73143851 original size:49 final size:49
Alignment explanation
Indices: 73143774--73143901 Score: 184
Period size: 49 Copynumber: 2.6 Consensus size: 49
73143764 CTTGTTGTGT
*
73143774 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAAAGC
* * * ** *
73143823 CAGTGTAAGACCTGTTTGGGACACGGCATCGATATTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAAAGC
*
73143872 CAGTGTAAGACCTATCTGGGACATGGCATC
1 CAGTGTAAGACCTGTCTGGGACATGGCATC
73143902 AACTTTGATG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATATATGAAAGC
Found at i:73145817 original size:19 final size:19
Alignment explanation
Indices: 73145793--73145832 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73145783 AGTTACACGG
* * *
73145793 CCTGGGGACATGGGCGTGT
1 CCTGGGCACACGGGCATGT
73145812 CCTGGGCACACGGGCATGT
1 CCTGGGCACACGGGCATGT
73145831 CC
1 CC
73145833 CTGTGCACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.12, C:0.30, G:0.40, T:0.17
Consensus pattern (19 bp):
CCTGGGCACACGGGCATGT
Found at i:73147307 original size:25 final size:24
Alignment explanation
Indices: 73147265--73147312 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
73147255 TGGTTTGATT
73147265 ATGTGTATAAATGTAGGTATGGTTC
1 ATGTGTATAAATGTAGGT-TGGTTC
*
73147290 ATGT-TATAAATTTGAGGTTGGTT
1 ATGTGTATAAATGT-AGGTTGGTT
73147313 TTGTAATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (24 bp):
ATGTGTATAAATGTAGGTTGGTTC
Found at i:73163381 original size:17 final size:17
Alignment explanation
Indices: 73163338--73163385 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
73163328 GCAATTCCCC
*
73163338 AATGCATTGACAA-GAA
1 AATGCAATGACAATGAA
* *
73163354 TATGTAATGACAATGAA
1 AATGCAATGACAATGAA
73163371 AATGCAATGACAATG
1 AATGCAATGACAATG
73163386 TATACTTATC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 10 0.38
17 16 0.62
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (17 bp):
AATGCAATGACAATGAA
Found at i:73173516 original size:19 final size:19
Alignment explanation
Indices: 73173489--73173532 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
73173479 AATGTATGTT
*
73173489 TTTACTTAGTTTTAATATG
1 TTTATTTAGTTTTAATATG
73173508 TTTATTTAGTTTTAATATG
1 TTTATTTAGTTTTAATATG
73173527 TTTATT
1 TTTATT
73173533 GCTATGATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.25, C:0.02, G:0.09, T:0.64
Consensus pattern (19 bp):
TTTATTTAGTTTTAATATG
Found at i:73178876 original size:22 final size:22
Alignment explanation
Indices: 73178851--73178896 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
73178841 GCCAAAACAA
73178851 TATCAAAATAATATGGTTCATT
1 TATCAAAATAATATGGTTCATT
73178873 TATCAAAATAATATGGTTCATT
1 TATCAAAATAATATGGTTCATT
73178895 TA
1 TA
73178897 CCATAATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
TATCAAAATAATATGGTTCATT
Found at i:73181361 original size:25 final size:25
Alignment explanation
Indices: 73181327--73181441 Score: 106
Period size: 25 Copynumber: 4.6 Consensus size: 25
73181317 TGCTCCACAT
*
73181327 CTCGTGAGAGCATATTGATTTATAG
1 CTCGTGAGAGCATACTGATTTATAG
* * *
73181352 CTCGTGAGAGTATACCGAATTATAG
1 CTCGTGAGAGCATACTGATTTATAG
* * * *
73181377 CTCGTAAAAGCATACTAATCTATAG
1 CTCGTGAGAGCATACTGATTTATAG
* * * *
73181402 CTCGAGTGAGCATACTGATTCACAG
1 CTCGTGAGAGCATACTGATTTATAG
73181427 CTCGT-ATGAGCATAC
1 CTCGTGA-GAGCATAC
73181442 ATGTACATGA
Statistics
Matches: 68, Mismatches: 21, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
25 68 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTCGTGAGAGCATACTGATTTATAG
Found at i:73187372 original size:20 final size:21
Alignment explanation
Indices: 73187337--73187378 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
73187327 AATTTATATA
73187337 TTTATATATTTCTTTATTTTC
1 TTTATATATTTCTTTATTTTC
*
73187358 TTTATTTATTT-TTTATTTTC
1 TTTATATATTTCTTTATTTTC
73187378 T
1 T
73187379 AAATTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATATATTTCTTTATTTTC
Found at i:73187384 original size:20 final size:21
Alignment explanation
Indices: 73187343--73187386 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
73187333 TATATTTATA
**
73187343 TATTTCTTTATTTTCTTTATT
1 TATTTCTTTATTTTCTAAATT
73187364 TATTT-TTTATTTTCTAAATT
1 TATTTCTTTATTTTCTAAATT
73187384 TAT
1 TAT
73187387 ATATTTCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (21 bp):
TATTTCTTTATTTTCTAAATT
Found at i:73189073 original size:182 final size:170
Alignment explanation
Indices: 73188764--73189255 Score: 623
Period size: 171 Copynumber: 2.8 Consensus size: 170
73188754 CGTGTCATAG
* * * *
73188764 GCCATGTGGACATTTGAAATGGGAGTACATGGTCGTGTCCCAGCCTATGGT-CTACCCCGTGTAA
1 GCCATGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCCAGCCCAT-GTCCTACCCCGTGTAA
* *
73188828 CTCTCTGACTTAGGTCACACGAGCAATACACACA-CTCGTGTGGCTAGCCCGTGTGCCCTAAAAA
65 CTCTCTGACTTGGGTCACACGACCAATACACACACCT-GTGTGGCTAGCCCGTGTGCCCTAAAAA
* * *
73188892 TGGCCATAAATGCTAGTGTGTCAGGCCATGTGTCTCACACGGCCAC-TAG-ACAC
129 TGGCCATAAACGC--GCGTGT---GCCA-G-G---AACAC-GCC-CGT-GCACAC
73188945 GCTCATGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCCAGCCCATGTCCTACCCCGTGTAA
1 GC-CATGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCCAGCCCATGTCCTACCCCGTGTAA
* * *
73189010 CTCTCTGACTTGGGTCACACGACCAACACACACACCTGTTTGGCTGGCCCGTGTGCCCTAAAAAT
65 CTCTCTGACTTGGGTCACACGACCAATACACACACCTGTGTGGCTAGCCCGTGTGCCCTAAAAAT
* *
73189075 GGCCATAAACGCGCGTGTGCCAGGAACACGCCCGTGTCATAG
130 GGCCATAAACGCGCGTGTGCCAGGAACACGCCCGTG-CACAC
* * *
73189117 GCCGTGTGGACATTCGAAATAAGAGCACATGGTCGTGTCCTAGCCCATGTCCTACCCCGTGTAAC
1 GCCATGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCCAGCCCATGTCCTACCCCGTGTAAC
* * *
73189182 TCTTTGACTTGGGTCACACAACCAATACACACACCCGTGTGGCTAGCCCGTGTGCCCTAAAAATG
66 TCTCTGACTTGGGTCACACGACCAATACACACACCTGTGTGGCTAGCCCGTGTGCCCTAAAAATG
73189247 GCCATAAAC
131 GCCATAAAC
73189256 ACTCATGTGT
Statistics
Matches: 282, Mismatches: 23, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
170 2 0.01
171 132 0.47
172 8 0.03
175 1 0.00
176 1 0.00
177 4 0.01
180 5 0.02
181 4 0.01
182 123 0.44
183 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (170 bp):
GCCATGTGGACATTCGAAATAGGAGCACATGGTCGTGTCCCAGCCCATGTCCTACCCCGTGTAAC
TCTCTGACTTGGGTCACACGACCAATACACACACCTGTGTGGCTAGCCCGTGTGCCCTAAAAATG
GCCATAAACGCGCGTGTGCCAGGAACACGCCCGTGCACAC
Found at i:73190542 original size:24 final size:24
Alignment explanation
Indices: 73190486--73190578 Score: 80
Period size: 24 Copynumber: 3.9 Consensus size: 24
73190476 GAGCTGATGG
***
73190486 ACAGTAAGCTCTATTGAGCT-AAA
1 ACAGTAAGCTCTAACAAGCTGAAA
* *
73190509 ACGGTTAGCTCTAACAAGCTGAAA
1 ACAGTAAGCTCTAACAAGCTGAAA
* **
73190533 ACAGTAAGCTCTTACAAGCTGGTA
1 ACAGTAAGCTCTAACAAGCTGAAA
* * *
73190557 ACAGAAAGCTCTTACGAGCTGA
1 ACAGTAAGCTCTAACAAGCTGA
73190579 TATATCGGTA
Statistics
Matches: 56, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
23 15 0.27
24 41 0.73
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (24 bp):
ACAGTAAGCTCTAACAAGCTGAAA
Found at i:73192662 original size:36 final size:36
Alignment explanation
Indices: 73192622--73192740 Score: 150
Period size: 36 Copynumber: 3.3 Consensus size: 36
73192612 TGGTACACCC
*
73192622 GAAACACACCAGATGCACATAAAAGCTAATCTATCT
1 GAAACACACCAGATGCACATAAAAGCTAATCCATCT
*
73192658 GAAACACACCAAATG-ATCATAAAAGCTAATCCATCT
1 GAAACACACCAGATGCA-CATAAAAGCTAATCCATCT
* * * * *
73192694 GAAACACACCAGATGCTCATAAGAGTTAATACAACT
1 GAAACACACCAGATGCACATAAAAGCTAATCCATCT
*
73192730 AAAACACACCA
1 GAAACACACCA
73192741 AAAACTGGGA
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
35 1 0.01
36 71 0.99
ACGTcount: A:0.47, C:0.25, G:0.10, T:0.18
Consensus pattern (36 bp):
GAAACACACCAGATGCACATAAAAGCTAATCCATCT
Found at i:73203536 original size:16 final size:16
Alignment explanation
Indices: 73203515--73203548 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73203505 TTGTGTCGTA
*
73203515 ATTTACGAATTTCTTC
1 ATTTACGAAGTTCTTC
73203531 ATTTACGAAGTTCTTC
1 ATTTACGAAGTTCTTC
73203547 AT
1 AT
73203549 AAAAGCCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (16 bp):
ATTTACGAAGTTCTTC
Found at i:73225343 original size:40 final size:40
Alignment explanation
Indices: 73225191--73225336 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
73225181 TTGAATGATG
* * * *
73225191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
73225231 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73225271 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73225312 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73225337 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73225343 original size:80 final size:80
Alignment explanation
Indices: 73225191--73225369 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
73225181 TTGAATGATG
* * *
73225191 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
73225256 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
73225271 TCCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
73225334 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
73225351 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
73225370 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.72
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:73233020 original size:40 final size:40
Alignment explanation
Indices: 73232868--73233013 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
73232858 TTGAATGATG
* * * *
73232868 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
73232908 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73232948 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73232989 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73233014 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73233020 original size:80 final size:80
Alignment explanation
Indices: 73232868--73233046 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
73232858 TTGAATGATG
* * *
73232868 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
73232933 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
73232948 TCCGGGTTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
73233011 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
* *
73233028 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
73233047 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 60 0.72
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:73239915 original size:28 final size:28
Alignment explanation
Indices: 73239852--73240005 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
73239842 ATATTAAGTC
*
73239852 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73239879 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73239907 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73239935 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73239963 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73239991 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73240006 GTACAATTTA
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 21 0.17
28 100 0.83
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73248046 original size:28 final size:28
Alignment explanation
Indices: 73247983--73248108 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
73247973 ATATTAAGTC
*
73247983 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73248010 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73248038 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73248066 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
73248095 CGTACACTTAGTGC
1 CGCACACTTAGTGC
73248109 CAATCTCATG
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 21 0.24
28 50 0.56
29 18 0.20
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73250706 original size:28 final size:29
Alignment explanation
Indices: 73250675--73250730 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
73250665 CCGAAATACT
*
73250675 GATAT-CATGG-CCAGAAGCCAAATCAGTC
1 GATATGCATGGCCCA-AAGCAAAATCAGTC
73250703 GATATGCATGGCCCAAAGCAAAATCAGT
1 GATATGCATGGCCCAAAGCAAAATCAGT
73250731 TTATCTCTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 5 0.20
29 17 0.68
30 3 0.12
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (29 bp):
GATATGCATGGCCCAAAGCAAAATCAGTC
Found at i:73251357 original size:21 final size:20
Alignment explanation
Indices: 73251333--73251371 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
73251323 CTTGTTTAAT
73251333 TATCAACAACCATTCAAAATC
1 TATCAACAACCA-TCAAAATC
* *
73251354 TATCATCAATCATCAAAA
1 TATCAACAACCATCAAAA
73251372 CTGATACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
TATCAACAACCATCAAAATC
Found at i:73258414 original size:29 final size:28
Alignment explanation
Indices: 73258362--73258416 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
73258352 CCAAAATACT
* **
73258362 GATATCATGGCCCGAAGCTGAATCAGCC
1 GATATCATAGCCCGAAGCCAAATCAGCC
73258390 GATATGCATAGCCCGAAGCCAAATCAG
1 GATAT-CATAGCCCGAAGCCAAATCAG
73258417 TTTATCTCGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.33, C:0.27, G:0.24, T:0.16
Consensus pattern (28 bp):
GATATCATAGCCCGAAGCCAAATCAGCC
Found at i:73260097 original size:13 final size:13
Alignment explanation
Indices: 73260079--73260103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73260069 CCGAACATAG
73260079 ATAGCCAAACATC
1 ATAGCCAAACATC
73260092 ATAGCCAAACAT
1 ATAGCCAAACAT
73260104 TTGGTCATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAGCCAAACATC
Found at i:73263155 original size:16 final size:16
Alignment explanation
Indices: 73263136--73263168 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
73263126 ACCATCAATG
73263136 TTATATTAAATTGATT
1 TTATATTAAATTGATT
73263152 TTATATTAAATTGATT
1 TTATATTAAATTGATT
73263168 T
1 T
73263169 GAAAACGTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
TTATATTAAATTGATT
Found at i:73265482 original size:25 final size:25
Alignment explanation
Indices: 73265447--73265498 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
73265437 GGAAAAGGCT
73265447 AATTTTAAGGGTTCTTAGGCATTCC
1 AATTTTAAGGGTTCTTAGGCATTCC
*
73265472 AATTTTGAGGGTTCTTAGGCATTCC
1 AATTTTAAGGGTTCTTAGGCATTCC
73265497 AA
1 AA
73265499 AGCCTATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (25 bp):
AATTTTAAGGGTTCTTAGGCATTCC
Found at i:73285322 original size:22 final size:22
Alignment explanation
Indices: 73285297--73285346 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
73285287 AAAACATGTT
* *
73285297 TGTTGCGGAAGCATTTCAACAA
1 TGTTGCGAAAGCATATCAACAA
73285319 TGTTGCGAAAGCATATCAACAA
1 TGTTGCGAAAGCATATCAACAA
73285341 TGTTGC
1 TGTTGC
73285347 AAAAACGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (22 bp):
TGTTGCGAAAGCATATCAACAA
Found at i:73286768 original size:26 final size:26
Alignment explanation
Indices: 73286726--73286861 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
73286716 TGATACAAAT
73286726 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73286752 TGATAATAAGTTGGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73286778 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73286804 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
73286830 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
73286856 TGATAA
1 TGATAA
73286862 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:73288368 original size:26 final size:26
Alignment explanation
Indices: 73288302--73288377 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
73288292 AAAAGTAGCC
* *
73288302 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGGA
* *
73288330 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTATTATACCCCTAGGTGGA
*
73288356 AAATTACCATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
73288378 GTTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGGA
Found at i:73288521 original size:27 final size:27
Alignment explanation
Indices: 73288480--73288619 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
73288470 GAGGAAGCGT
*
73288480 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
73288507 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
73288534 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
73288561 TCTGGTGGCTCTACCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
73288589 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
73288615 TCTGG
1 TCTGG
73288620 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 81 0.81
28 14 0.14
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:73288565 original size:54 final size:55
Alignment explanation
Indices: 73288480--73288619 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
73288470 GAGGAAGCGT
* * * *
73288480 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTACCACAAATATCTGTA
* *
73288534 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTACCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTACCACAAATATCTGTA
* *
73288589 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
73288620 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 59 0.77
55 18 0.23
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTACCACAAATATCTGTA
Found at i:73290373 original size:26 final size:26
Alignment explanation
Indices: 73290344--73290477 Score: 241
Period size: 26 Copynumber: 5.2 Consensus size: 26
73290334 TGATACAAAT
73290344 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73290370 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73290396 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73290422 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73290448 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
73290474 TGAT
1 TGAT
73290478 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73295267 original size:13 final size:13
Alignment explanation
Indices: 73295251--73295275 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73295241 ACCAACATAG
73295251 ATAGCCAAACATC
1 ATAGCCAAACATC
73295264 ATAGCCAAACAT
1 ATAGCCAAACAT
73295276 TTGGTCATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAGCCAAACATC
Found at i:73297655 original size:16 final size:17
Alignment explanation
Indices: 73297622--73297658 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
73297612 TATTATATGT
73297622 TTTATTATATTAACATG
1 TTTATTATATTAACATG
*
73297639 TTTATTAT-TTTACATG
1 TTTATTATATTAACATG
73297655 TTTA
1 TTTA
73297659 ACCTTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTATTATATTAACATG
Found at i:73301036 original size:93 final size:93
Alignment explanation
Indices: 73300929--73301099 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73300919 GCCCCTAAGT
* *
73300929 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73300994 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
73301022 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73301087 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73301100 TCAACTTGTG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73301096 original size:46 final size:46
Alignment explanation
Indices: 73300924--73301096 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
73300914 AACCCGCCCC
* * *
73300924 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
73300970 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
73301018 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
73301063 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73301097 TGCTCAACTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:73302529 original size:70 final size:70
Alignment explanation
Indices: 73302446--73302675 Score: 374
Period size: 70 Copynumber: 3.3 Consensus size: 70
73302436 TATGCTATTG
*
73302446 TAAA-TATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTATTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
73302510 TACTA
66 TACTA
* *
73302515 TAAATTATTGGTTGTCCAAATTAGGATAAATTCATGGTGCTTAGCTAGTTAATATGTTGCTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
*
73302580 TACTT
66 TACTA
73302585 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGCTT-CTGTT
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATG-TTGCTGTT
*
73302649 ATACTG
65 ATACTA
* *
73302655 TAAATTATTGGCTGTACAAAT
1 TAAATTATTGGTTGTCCAAAT
73302676 AAGGTTGAGG
Statistics
Matches: 150, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
69 4 0.03
70 144 0.96
71 2 0.01
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (70 bp):
TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
TACTA
Found at i:73307409 original size:27 final size:27
Alignment explanation
Indices: 73307378--73307431 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
73307368 AATTTTTGCA
73307378 CTAATCCTTTCTTTCATAGCATCAACT
1 CTAATCCTTTCTTTCATAGCATCAACT
* *
73307405 CTAATCCTTTCTTTCATATCGTCAACT
1 CTAATCCTTTCTTTCATAGCATCAACT
73307432 AACACATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.30, G:0.04, T:0.43
Consensus pattern (27 bp):
CTAATCCTTTCTTTCATAGCATCAACT
Found at i:73307691 original size:14 final size:15
Alignment explanation
Indices: 73307672--73307705 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
73307662 CATACAAATC
73307672 TTTCTTCTTCTTT-T
1 TTTCTTCTTCTTTGT
73307686 TTTCTTCTTCTTTGT
1 TTTCTTCTTCTTTGT
73307701 TTTCT
1 TTTCT
73307706 CCTCTTCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTCTTCTTCTTTGT
Found at i:73309478 original size:27 final size:27
Alignment explanation
Indices: 73309436--73309487 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
73309426 TTGTTACATG
73309436 CCTTTTGCTTTCTATTTAT-TTTATTA
1 CCTTTTGCTTTCTATTTATATTTATTA
*
73309462 CCTTTTTCTTTCTTATTTATATTTAT
1 CCTTTTGCTTTC-TATTTATATTTAT
73309488 CTAAAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 11 0.48
27 7 0.30
28 5 0.22
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.67
Consensus pattern (27 bp):
CCTTTTGCTTTCTATTTATATTTATTA
Found at i:73316889 original size:16 final size:16
Alignment explanation
Indices: 73316868--73316900 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
73316858 ACAGATCAAA
73316868 CCTTCTCATAGTGATG
1 CCTTCTCATAGTGATG
73316884 CCTTCTCATAGTGATG
1 CCTTCTCATAGTGATG
73316900 C
1 C
73316901 TCTCTGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.36
Consensus pattern (16 bp):
CCTTCTCATAGTGATG
Found at i:73317124 original size:18 final size:17
Alignment explanation
Indices: 73317101--73317134 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73317091 GTGCTTATCC
*
73317101 TTCTTTTCTTGTTTTTTT
1 TTCTTTT-TTCTTTTTTT
73317119 TTCTTTTTTCTTTTTT
1 TTCTTTTTTCTTTTTT
73317135 GGGTAGCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.00, C:0.12, G:0.03, T:0.85
Consensus pattern (17 bp):
TTCTTTTTTCTTTTTTT
Found at i:73318419 original size:20 final size:21
Alignment explanation
Indices: 73318393--73318438 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
73318383 ATAATTTTTT
*
73318393 ATAAATTTGT-AAAATATTAA
1 ATAAATTTATAAAAATATTAA
*
73318413 CTAAATTTATAAAAATATTAA
1 ATAAATTTATAAAAATATTAA
73318434 ATAAA
1 ATAAA
73318439 GTTCAAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATAAATTTATAAAAATATTAA
Found at i:73318447 original size:21 final size:21
Alignment explanation
Indices: 73318403--73318447 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
73318393 ATAAATTTGT
* *
73318403 AAAATATTAACTAAATTTATA
1 AAAATATTAAATAAATTCATA
73318424 AAAATATTAAATAAAGTTCA-A
1 AAAATATTAAATAAA-TTCATA
73318445 AAA
1 AAA
73318448 GTTTTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATATTAAATAAATTCATA
Found at i:73319200 original size:18 final size:18
Alignment explanation
Indices: 73319169--73319203 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73319159 ACGTAATCAA
* *
73319169 TTTCTTCTTTCCCTTAGC
1 TTTCTGCTTCCCCTTAGC
73319187 TTTCTGCTTCCCCTTAG
1 TTTCTGCTTCCCCTTAG
73319204 AGGACGAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.34, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTCTGCTTCCCCTTAGC
Found at i:73320125 original size:142 final size:142
Alignment explanation
Indices: 73319869--73320143 Score: 505
Period size: 142 Copynumber: 1.9 Consensus size: 142
73319859 TTTATTTTAA
*
73319869 CAACATATCAAGAATGCAGTATGATGCATGCGTCTTATATTAAAACCTTGAAAAACATTTTTCCA
1 CAACATATCAAGAATGCAGTATGATGCATGCATCTTATATTAAAACCTTGAAAAACATTTTTCCA
* *
73319934 TTGCTACGATCATTTTCACACCATCAATCATGTTGCCTTTGGGTCTTATGATTAACTAGAAAAAA
66 TTGCTACGATCATTCTCACACCATCAATCATGTCGCCTTTGGGTCTTATGATTAACTAGAAAAAA
73319999 CATATTAACTAG
131 CATATTAACTAG
*
73320011 CAACATATCAAGAATGTAGTATGATGCATGCATCTTATATTAAAACCTTGAAAAACATTTTTCCA
1 CAACATATCAAGAATGCAGTATGATGCATGCATCTTATATTAAAACCTTGAAAAACATTTTTCCA
*
73320076 TTGCTACGATCATTCTCACACCATCAATCATGTCGCCTTTGGGTCTTATGATTAACTAGCAAAAA
66 TTGCTACGATCATTCTCACACCATCAATCATGTCGCCTTTGGGTCTTATGATTAACTAGAAAAAA
73320141 CAT
131 CAT
73320144 GGATTACATT
Statistics
Matches: 128, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 128 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (142 bp):
CAACATATCAAGAATGCAGTATGATGCATGCATCTTATATTAAAACCTTGAAAAACATTTTTCCA
TTGCTACGATCATTCTCACACCATCAATCATGTCGCCTTTGGGTCTTATGATTAACTAGAAAAAA
CATATTAACTAG
Found at i:73320985 original size:5 final size:5
Alignment explanation
Indices: 73320975--73321096 Score: 244
Period size: 5 Copynumber: 24.4 Consensus size: 5
73320965 ATATCAAAAT
73320975 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
73321025 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
73321075 TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TA
73321097 AACAATTATA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 117 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:73321302 original size:22 final size:22
Alignment explanation
Indices: 73321276--73321318 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
73321266 CAATTGGGAA
73321276 ACTAGATGTAAGCAAAATTATT
1 ACTAGATGTAAGCAAAATTATT
73321298 ACTAGATGTAAGCAAAATTAT
1 ACTAGATGTAAGCAAAATTAT
73321319 CATCTTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (22 bp):
ACTAGATGTAAGCAAAATTATT
Found at i:73321422 original size:72 final size:72
Alignment explanation
Indices: 73321336--73321480 Score: 290
Period size: 72 Copynumber: 2.0 Consensus size: 72
73321326 TGTTAAACCG
73321336 AATAAGTTATAAGTCGTCCAAATAGTTAATTAATAATGTTACATGCAAATCTTTTGTTAATTGGT
1 AATAAGTTATAAGTCGTCCAAATAGTTAATTAATAATGTTACATGCAAATCTTTTGTTAATTGGT
73321401 CATACAT
66 CATACAT
73321408 AATAAGTTATAAGTCGTCCAAATAGTTAATTAATAATGTTACATGCAAATCTTTTGTTAATTGGT
1 AATAAGTTATAAGTCGTCCAAATAGTTAATTAATAATGTTACATGCAAATCTTTTGTTAATTGGT
73321473 CATACAT
66 CATACAT
73321480 A
1 A
73321481 CTGCCAGTAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (72 bp):
AATAAGTTATAAGTCGTCCAAATAGTTAATTAATAATGTTACATGCAAATCTTTTGTTAATTGGT
CATACAT
Found at i:73329380 original size:93 final size:93
Alignment explanation
Indices: 73329221--73329391 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
73329211 GCTCATAAGT
* * *
73329221 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
73329286 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
73329314 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
73329379 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73329392 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73329381 original size:46 final size:46
Alignment explanation
Indices: 73329214--73329388 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
73329204 GTAACCCGCT
* * *
73329214 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATC
* *
73329260 CATAGGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATC
* * * * *
73329309 -TTCA-CGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATC
73329353 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73329389 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 27 0.26
48 1 0.01
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATC
Found at i:73345541 original size:39 final size:39
Alignment explanation
Indices: 73345479--73345671 Score: 180
Period size: 39 Copynumber: 5.0 Consensus size: 39
73345469 CAGTGATGTT
*
73345479 TATCCGGACTT-AGAGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAG-GTCCGCAGGCTATGTGCTGGAATTA
*
73345518 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
73345557 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * * *
73345596 TGTCCGGGC-TAAAGTCC-CGAGGCTTTGAGCTGGTATTA
1 TATCCGGACTTAAGGTCCGC-AGGCTATGTGCTGGAATTA
** **
73345634 TA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGGTAATT
1 TATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG-AATT
73345672 GGTTTCAAGT
Statistics
Matches: 128, Mismatches: 20, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
37 6 0.05
38 34 0.27
39 85 0.66
40 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:73355821 original size:46 final size:44
Alignment explanation
Indices: 73355757--73355884 Score: 150
Period size: 45 Copynumber: 2.8 Consensus size: 44
73355747 CCCAAGGCCA
* *
73355757 ATGCATATCCCAGACATGTCTTACACTAGCTCTCATCTTAATGT-CG
1 ATGCATGTCCTAGACATGTCTTACACTAGCTCTCA---TAATGTCCG
* *
73355803 ATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGCCT
1 ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATGT-CCG
* * *
73355848 ATGCATGTGCTAGACATGTCTTACACTATCTCACATA
1 ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATA
73355885 CCACCCAATG
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
43 6 0.08
45 34 0.47
46 32 0.44
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.33
Consensus pattern (44 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATGTCCG
Found at i:73355867 original size:45 final size:44
Alignment explanation
Indices: 73355757--73355875 Score: 150
Period size: 46 Copynumber: 2.6 Consensus size: 44
73355747 CCCAAGGCCA
* *
73355757 ATGCATATCCCAGACATGTCTTACACTAGCTCTCATCTTAATGTCG
1 ATGCATGTCCTAGACATGTCTTACACTAGCTCTCA--TTAATGTCG
* *
73355803 ATGCATGTCCTAGACATGTCTTACACTGGCTCTCA-TAATGTGCCT
1 ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATTAATGT--CG
*
73355848 ATGCATGTGCTAGACATGTCTTACACTA
1 ATGCATGTCCTAGACATGTCTTACACTA
73355876 TCTCACATAC
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
43 6 0.09
45 27 0.42
46 32 0.49
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (44 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCTCTCATTAATGTCG
Found at i:73361395 original size:20 final size:21
Alignment explanation
Indices: 73361370--73361409 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
73361360 CACTTGAAAC
*
73361370 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
73361390 AGGGCAACACGCCCATGTGG
1 AGGGCAACACGCCCATGTGG
73361410 CCCTGCTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:73361621 original size:14 final size:14
Alignment explanation
Indices: 73361602--73361628 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73361592 TGACGTTAGC
73361602 AACAATTTTGGGGA
1 AACAATTTTGGGGA
73361616 AACAATTTTGGGG
1 AACAATTTTGGGG
73361629 CACACGGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (14 bp):
AACAATTTTGGGGA
Found at i:73364310 original size:40 final size:40
Alignment explanation
Indices: 73364254--73364429 Score: 214
Period size: 40 Copynumber: 4.4 Consensus size: 40
73364244 GATGGTAACC
* * * * * *
73364254 GGGCTAATTCCTGAAGGAATTTCTGCTAGTGACTA-ATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCT
73364294 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
*
73364334 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
* *
73364374 GGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT-T
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCT
* *
73364413 CGGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
73364430 TACTTGGTCT
Statistics
Matches: 122, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 17 0.14
40 104 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCT
Found at i:73365984 original size:49 final size:48
Alignment explanation
Indices: 73365926--73366184 Score: 166
Period size: 49 Copynumber: 5.5 Consensus size: 48
73365916 CTCAATGTCG
73365926 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTGGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGT-GATGCCA
* * *
73365975 TGTCCCAGACAGGTCTTACACT-AGCTCTCATCTATTG-GTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAG-GT-GATGCCA
* * * * * * * * *
73366024 TGTCCCAAACCGGTCTTACACTGA----CACACAGCAAGCTAACGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTGATGCCA
* ** *
73366068 TGTCCCAAACAGGTCTTACACT-AGCTTGT-ATATCCCGAGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAGG-TGATGCCA
* * *
73366116 TGTCCCAGACATGTCTTACACTGGCTATT-ATA-AT-GTGGCTGATG-CA
1 TGTCCCAGACAGGTCTTACACTGACT-TTCATATATCGAGG-TGATGCCA
*
73366162 TGTCCCAGACATGTCTTACACTG
1 TGTCCCAGACAGGTCTTACACTG
73366185 GCTCACATAC
Statistics
Matches: 165, Mismatches: 32, Indels: 29
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 26 0.16
45 4 0.02
46 34 0.21
48 35 0.21
49 64 0.39
50 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTGATGCCA
Found at i:73366132 original size:48 final size:46
Alignment explanation
Indices: 73366066--73366183 Score: 141
Period size: 46 Copynumber: 2.5 Consensus size: 46
73366056 AAGCTAACGC
* *
73366066 CATGTCCCAAACAGGTCTTACACTAGCT-TGTAT-ATCCCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTAT-TATAAT---GAGGCCGATG
* * *
73366114 CATGTCCCAGACATGTCTTACACTGGCTATTATAATGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTATTATAATGAGGCCGATG
73366160 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
73366184 GGCTCACATA
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
46 32 0.51
48 28 0.44
49 3 0.05
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTATTATAATGAGGCCGATG
Found at i:73368365 original size:50 final size:49
Alignment explanation
Indices: 73368243--73368418 Score: 199
Period size: 50 Copynumber: 3.5 Consensus size: 49
73368233 TGAGGTCGCA
*** * *
73368243 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TT-GGTCACG
* **
73368294 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACG
* * * ** *
73368344 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACG
73368393 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
73368419 TGCGTACCAG
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 29 0.27
50 44 0.42
51 33 0.31
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACG
Found at i:73375552 original size:11 final size:11
Alignment explanation
Indices: 73375536--73375591 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
73375526 ACAGGACTTG
*
73375536 TTCGACCATGA
1 TTCGACAATGA
73375547 TTCGACAATGA
1 TTCGACAATGA
* *
73375558 TTCGACAGTAA
1 TTCGACAATGA
73375569 TTCGA-AATGA
1 TTCGACAATGA
*
73375579 TTCGACTATGA
1 TTCGACAATGA
73375590 TT
1 TT
73375592 TGGTATTGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
10 8 0.21
11 30 0.79
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (11 bp):
TTCGACAATGA
Found at i:73380988 original size:40 final size:40
Alignment explanation
Indices: 73380933--73381114 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
73380923 TATTCGGATG
* * *
73380933 ATATCCGGGCTAAGTCCCAAAGGCCTTTCTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
73380973 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
73381013 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
73381053 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
73381093 ATATCC-GTCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
73381115 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.10
40 115 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:73384012 original size:50 final size:50
Alignment explanation
Indices: 73383932--73384072 Score: 196
Period size: 50 Copynumber: 2.8 Consensus size: 50
73383922 GGGTAAGGTA
* * * * *
73383932 CCGACGCCATGTCCCTGACATAGTCTTACACT-GTTTCTCATCTATCG-GTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATATCGAG-G
*
73383982 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
73384032 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT
73384073 GTCTCCCTAT
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
50 81 0.98
51 2 0.02
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.28
Consensus pattern (50 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
Found at i:73388029 original size:42 final size:42
Alignment explanation
Indices: 73387871--73388030 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
73387861 TACCGTACCA
* * *
73387871 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * * * * * * *
73387913 ATGCTA-ATAGCCAGCTGTAGTTTTACATGAAGTCTCATATCG
1 ATGCCATAT-CCCAGATATGGTCTTACACGTAGTCTCATATCG
* *
73387955 ATGCCATATCCCAGA-ATGGTCTTGCACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
73387996 ATGCCATATCCCAGATATGGTCTTACACGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCT
73388031 TAGTAACCCT
Statistics
Matches: 95, Mismatches: 20, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
41 36 0.38
42 57 0.60
43 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:73388030 original size:83 final size:84
Alignment explanation
Indices: 73387871--73388030 Score: 180
Period size: 83 Copynumber: 1.9 Consensus size: 84
73387861 TACCGTACCA
* * * * * * *
73387871 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCTAATAGCCAGCTGTAGTTT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATACCCAGATATAGTCT
*
73387936 TACATGAAGTCTCATATCG
66 TACACGAAGTCTCATATCG
* * * *
73387955 ATGCCATATCCCAGA-ATGGTCTTGCACGTAGTCTCATATTGATGCC-ATATCCCAGATATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATA-CCCAGATATAGTC
*
73388018 TTACACGTAGTCT
65 TTACACGAAGTCT
73388031 TAGTAACCCT
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
82 3 0.05
83 44 0.71
84 15 0.24
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAATACCCAGATATAGTCT
TACACGAAGTCTCATATCG
Found at i:73397626 original size:19 final size:19
Alignment explanation
Indices: 73397594--73397646 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
73397584 TTAGTTATTT
*
73397594 TTATTTTTAATTTTAAATA
1 TTATTTTTATTTTTAAATA
* *
73397613 TTATTTTTATTTTTTATTA
1 TTATTTTTATTTTTAAATA
* *
73397632 TTTTTTTTGTTTTTA
1 TTATTTTTATTTTTA
73397647 CAAATAAACT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (19 bp):
TTATTTTTATTTTTAAATA
Found at i:73397638 original size:13 final size:13
Alignment explanation
Indices: 73397588--73397646 Score: 50
Period size: 12 Copynumber: 4.7 Consensus size: 13
73397578 TTTTAGTTAG
73397588 TTATTTTTA-TTT
1 TTATTTTTATTTT
* ** *
73397600 TTAATTTTAAATA
1 TTATTTTTATTTT
73397613 TTATTTTTATTTT
1 TTATTTTTATTTT
*
73397626 TTATTATT-TTTT
1 TTATTTTTATTTT
*
73397638 TTGTTTTTA
1 TTATTTTTA
73397647 CAAATAAACT
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
12 18 0.51
13 17 0.49
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (13 bp):
TTATTTTTATTTT
Found at i:73402398 original size:28 final size:28
Alignment explanation
Indices: 73402358--73402414 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
73402348 ATGAAAAAGT
73402358 ATATAAATTTTTGTGTTTCCACACCCCC
1 ATATAAATTTTTGTGTTTCCACACCCCC
* *
73402386 ATATAAATTTTTGTGTTTTCACTCCCCC
1 ATATAAATTTTTGTGTTTCCACACCCCC
73402414 A
1 A
73402415 AACTTAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.26, G:0.07, T:0.42
Consensus pattern (28 bp):
ATATAAATTTTTGTGTTTCCACACCCCC
Found at i:73421130 original size:34 final size:34
Alignment explanation
Indices: 73421084--73421206 Score: 126
Period size: 34 Copynumber: 3.7 Consensus size: 34
73421074 TTGAATAGTC
* * *
73421084 TGGGCCTCAGCCCATTTCAGTTGCAATATCAGTG
1 TGGGCCTTAGCCCATTTCAGTTACAGTATCAGTG
* * *
73421118 TGGGCCTTAGCCCAATACAGTAACAGTATCAGTG
1 TGGGCCTTAGCCCATTTCAGTTACAGTATCAGTG
73421152 ATGGG--TTAGCCCATTTCAG-TACAGTATCAGTG
1 -TGGGCCTTAGCCCATTTCAGTTACAGTATCAGTG
** **
73421184 ACGGTGTTAGCCCATTTCAGTTA
1 TGGGCCTTAGCCCATTTCAGTTA
73421207 GCCCATTTCA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
31 2 0.03
32 12 0.16
33 26 0.35
34 30 0.41
35 4 0.05
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTTCAGTTACAGTATCAGTG
Found at i:73421172 original size:33 final size:32
Alignment explanation
Indices: 73421092--73421204 Score: 129
Period size: 33 Copynumber: 3.4 Consensus size: 32
73421082 TCTGGGCCTC
* *
73421092 AGCCCATTTCAGTTGCAATATCAGTG-TGGGCCTT
1 AGCCCATTTCAG-TACAGTATCAGTGATGGG--TT
* *
73421126 AGCCCAATACAGTAACAGTATCAGTGATGGGTT
1 AGCCCATTTCAGT-ACAGTATCAGTGATGGGTT
*
73421159 AGCCCATTTCAGTACAGTATCAGTGACGGTGTT
1 AGCCCATTTCAGTACAGTATCAGTGATGG-GTT
73421192 AGCCCATTTCAGT
1 AGCCCATTTCAGT
73421205 TAGCCCATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
32 15 0.22
33 30 0.43
34 20 0.29
35 4 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (32 bp):
AGCCCATTTCAGTACAGTATCAGTGATGGGTT
Found at i:73421208 original size:14 final size:14
Alignment explanation
Indices: 73421189--73421218 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
73421179 CAGTGACGGT
73421189 GTTAGCCCATTTCA
1 GTTAGCCCATTTCA
73421203 GTTAGCCCATTTCA
1 GTTAGCCCATTTCA
73421217 GT
1 GT
73421219 ACAGTATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.37
Consensus pattern (14 bp):
GTTAGCCCATTTCA
Found at i:73422062 original size:26 final size:26
Alignment explanation
Indices: 73422026--73422077 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
73422016 ACAACGCCAA
73422026 CGTAAATTCAAACATAGCCCCGTGTT
1 CGTAAATTCAAACATAGCCCCGTGTT
73422052 CGTAAATTCAAACATAGCCCCGTGTT
1 CGTAAATTCAAACATAGCCCCGTGTT
73422078 AGTCCTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CGTAAATTCAAACATAGCCCCGTGTT
Done.