Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 225 of 290
Found at i:73425056 original size:47 final size:47
Alignment explanation
Indices: 73424997--73425178 Score: 319
Period size: 47 Copynumber: 3.9 Consensus size: 47
73424987 GAAATGATAG
* *
73424997 TAAGGCCTAATGGTCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
73425044 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
73425091 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
73425138 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
73425179 AGTGATGAAT
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:73425184 original size:71 final size:72
Alignment explanation
Indices: 73425107--73425256 Score: 268
Period size: 71 Copynumber: 2.1 Consensus size: 72
73425097 CAAATGGTCG
73425107 ATGTGATGAATGTGAAAGTGTATAT-GTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGTGTATATAG-GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
73425171 GTGTATAT
65 GTGTATAT
*
73425179 A-GTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
73425243 TGTATAT
66 TGTATAT
73425250 ATGTGAT
1 ATGTGAT
73425257 AAGGCCTAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
71 68 0.91
72 7 0.09
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.31
Consensus pattern (72 bp):
ATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATAT
Found at i:73425188 original size:24 final size:25
Alignment explanation
Indices: 73425156--73425209 Score: 101
Period size: 24 Copynumber: 2.2 Consensus size: 25
73425146 AATAGCCGAT
73425156 GTGATGAATGTGAAAGTGTATATA-
1 GTGATGAATGTGAAAGTGTATATAG
73425180 GTGATGAATGTGAAAGTGTATATAG
1 GTGATGAATGTGAAAGTGTATATAG
73425205 GTGAT
1 GTGAT
73425210 AAGGCCTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 24 0.83
25 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.33
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATAG
Found at i:73425234 original size:47 final size:47
Alignment explanation
Indices: 73425180--73425399 Score: 343
Period size: 47 Copynumber: 4.7 Consensus size: 47
73425170 AGTGTATATA
*
73425180 GTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
73425227 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
73425274 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
73425321 GTG-TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
73425367 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
73425400 TCCCGAAGGG
Statistics
Matches: 160, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 40 0.25
47 120 0.75
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:73425244 original size:118 final size:119
Alignment explanation
Indices: 73425060--73425303 Score: 429
Period size: 118 Copynumber: 2.1 Consensus size: 119
73425050 CTAATGGCCG
*
73425060 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGTCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAG
*
73425125 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
66 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
73425179 A-GTGATGAATGTGAAAGTGTATATAG-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGTGTATAT-GTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAA
*
73425242 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65 GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
73425297 ATGTGAT
1 ATGTGAT
73425304 AAGGCCTAAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
118 112 0.94
119 7 0.06
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.31
Consensus pattern (119 bp):
ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:73425287 original size:165 final size:165
Alignment explanation
Indices: 73425015--73425348 Score: 591
Period size: 165 Copynumber: 2.0 Consensus size: 165
73425005 AATGGTCGAC
73425015 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
73425080 TATATGTGTGATAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
66 TATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
73425145 TAATAGCCGATGTGATGAATGTGAAAGTGTATATA-
131 TAATAGCCGATGTG-TGAATGTGAAAGTGTATATAT
73425180 GTGATGAATGTGAAAGTGTATATAG-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTGATGAATGTGAAAGTGTATAT-GTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
73425244 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
65 GTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
73425309 CTAATGGCCGATGTGTGAATGTGAAAGTGTATATAT
130 CTAATAGCCGATGTGTGAATGTGAAAGTGTATATAT
73425345 GTGA
1 GTGA
73425349 CAGGGCCGAG
Statistics
Matches: 162, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
164 20 0.12
165 141 0.87
166 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.30
Consensus pattern (165 bp):
GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGTGAATGTGAAAGTGTATATAT
Found at i:73425394 original size:93 final size:94
Alignment explanation
Indices: 73425180--73425399 Score: 343
Period size: 93 Copynumber: 2.4 Consensus size: 94
73425170 AGTGTATATA
*
73425180 GTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
73425245 TATATATGTGATAAGGCCTAATGGCCGAT
66 TATATATGTGACAAGGCCGAATGGCCAAC
73425274 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
73425338 TATATATGTGACAGGGCCGAGTGGCCAAC
66 TATATATGTGACAAGGCCGAATGGCCAAC
* * *
73425367 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
73425400 TCCCGAAGGG
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 67 0.58
94 49 0.42
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.28
Consensus pattern (94 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGACAAGGCCGAATGGCCAAC
Found at i:73440114 original size:35 final size:35
Alignment explanation
Indices: 73440067--73440141 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
73440057 GTGTTATCTA
*
73440067 GTGTGCTCGATGGTACTGGCTCTTATGAGCAACTG
1 GTGTGCTCGATGGTACTGGATCTTATGAGCAACTG
* *
73440102 GTGTGCTGGATGGTACTGGATCTTATGAGCATCTG
1 GTGTGCTCGATGGTACTGGATCTTATGAGCAACTG
73440137 GTGTG
1 GTGTG
73440142 TTGAACAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.16, C:0.16, G:0.35, T:0.33
Consensus pattern (35 bp):
GTGTGCTCGATGGTACTGGATCTTATGAGCAACTG
Found at i:73441811 original size:46 final size:45
Alignment explanation
Indices: 73441759--73441933 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
73441749 TGGTTGAGCA
73441759 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * * *
73441805 TTCGAACTTGTTGAGTTGAGTCTGAGTT--CTT-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG-GATGCGAA-T--G
*
73441850 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATG
* * *
73441898 CCCGAGCTCGTTCAGTTGAGTCCGAGTTCACTTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
73441934 GGCGGGTTAC
Statistics
Matches: 106, Mismatches: 12, Indels: 23
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 3 0.03
45 3 0.03
46 56 0.53
47 25 0.24
48 1 0.01
49 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATG
Found at i:73441915 original size:93 final size:93
Alignment explanation
Indices: 73441756--73441926 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
73441746 GGATGGTTGA
* ** * *
73441756 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTCAGT
*
73441821 TGAGTCTGAGTTCTTGAGATGTAACTAG
66 TGAGTCCGAGTTCTTGAGATGTAACTAG
* *
73441849 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTCAGT
73441914 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73441927 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCTTGAGATGTAACTAG
Found at i:73445392 original size:34 final size:34
Alignment explanation
Indices: 73445350--73445430 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
73445340 TTAGCCCCTT
*
73445350 TTTC-TTAACAGTATCAGTCTTGGCCTGAACCCA
1 TTTCATTAACAGTATCAGTCTAGGCCTGAACCCA
* * *
73445383 TTTCATTAACAGCGA-CAGTCTAGGCCTTAGCCCA
1 TTTCATTAACAG-TATCAGTCTAGGCCTGAACCCA
*
73445417 TTTCAGT-ACAGTAT
1 TTTCATTAACAGTAT
73445431 GCAAAAAAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
32 1 0.03
33 8 0.21
34 29 0.74
35 1 0.03
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (34 bp):
TTTCATTAACAGTATCAGTCTAGGCCTGAACCCA
Found at i:73446175 original size:24 final size:24
Alignment explanation
Indices: 73446142--73446191 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
73446132 CGATGCACTC
*
73446142 TTCGGTTTTTTGACCTTTCAGCCT
1 TTCGGCTTTTTGACCTTTCAGCCT
* *
73446166 TTCGGCTTTTTGGCTTTTCAGCCT
1 TTCGGCTTTTTGACCTTTCAGCCT
73446190 TT
1 TT
73446192 GCAGTTTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.06, C:0.24, G:0.18, T:0.52
Consensus pattern (24 bp):
TTCGGCTTTTTGACCTTTCAGCCT
Found at i:73458981 original size:131 final size:131
Alignment explanation
Indices: 73458831--73459071 Score: 376
Period size: 131 Copynumber: 1.8 Consensus size: 131
73458821 AAAAAAATTA
*
73458831 AAAATGAAGGCAATCTTCGATGTTTGGCAATTCAGGGAATCGTGCCCAATCGTGCTGGGTTGCAA
1 AAAACGAAGGCAATCTTCGATGTTTGGCAATTCAGGGAATCGTGCCCAATCGTGCTGGGTTGCAA
* *
73458896 TTT-CTCATTTGTTCAAAACAATCGAACATCCCTTTAGAATTTCACCCTCATCTTTAAAAATTCT
66 TTTCCT-ATTTGGTCAAAACAATCGAACATACCTTTAGAATTTCACCCTCATCTTTAAAAATTCT
73458960 TC
130 TC
* * *
73458962 AAAACGAAGGTAATGTTCGATGTTTGGCAATTCAGGGAATCGTGCCCTATCGTGCTGGGTTGCAA
1 AAAACGAAGGCAATCTTCGATGTTTGGCAATTCAGGGAATCGTGCCCAATCGTGCTGGGTTGCAA
* * * *
73459027 TTTCCTGTTTGGTCGAAATAATCGAATATACCTTTAGAATTTCAC
66 TTTCCTATTTGGTCAAAACAATCGAACATACCTTTAGAATTTCAC
73459072 TCATATTCTA
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
131 97 0.98
132 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (131 bp):
AAAACGAAGGCAATCTTCGATGTTTGGCAATTCAGGGAATCGTGCCCAATCGTGCTGGGTTGCAA
TTTCCTATTTGGTCAAAACAATCGAACATACCTTTAGAATTTCACCCTCATCTTTAAAAATTCTT
C
Found at i:73462898 original size:40 final size:40
Alignment explanation
Indices: 73462824--73463005 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
73462814 AACCCAAGTA
* *
73462824 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
73462863 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
73462903 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73462943 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
73462983 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73463006 CATTCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.09
40 122 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:73473978 original size:45 final size:45
Alignment explanation
Indices: 73473925--73474260 Score: 218
Period size: 45 Copynumber: 7.6 Consensus size: 45
73473915 AAGATTGTAG
73473925 ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
* * ** ****
73473970 ATCTTGTCTTCCTGAAGTTGCAGTGAAGTAGATTTAAG-C-CACC
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
* * * * * **
73474013 ATCCTATCTCCCTAAAGTTGTAGTGGAGTAGACCGAAGATTGT-A
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
* * * *
73474057 GATCTTGTCTCCCTGAAGTTGTAGTGAAGCAGATCGAAGACGGCGA
1 -ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
* * * ** ****
73474103 ATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-C-CACC
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
* * * * * * * **
73474146 ATCCTATCTGCCTAAAGTTGTAGTGGAGTAG-GCTGAATATTGT-A
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATC-GAAGACGGTGA
** * *
73474190 GATCTTGTCTCCCCAAAGTTACAGTGGAGCAGATCGAAGACGGTGA
1 -ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
*
73474236 ATCTTGTCTTCCTGAAGTTGCAGTG
1 ATCTTGTCTCCCTGAAGTTGCAGTG
73474261 AAGAAGATTT
Statistics
Matches: 213, Mismatches: 68, Indels: 20
0.71 0.23 0.07
Matches are distributed among these distances:
43 55 0.26
44 2 0.01
45 153 0.72
46 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (45 bp):
ATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGA
Found at i:73474152 original size:133 final size:133
Alignment explanation
Indices: 73473912--73474357 Score: 694
Period size: 133 Copynumber: 3.4 Consensus size: 133
73473902 GGGTAACAGG
* *
73473912 CTGAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGACGGTGAATCTTGT
1 CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGT
*
73473977 CTTCCTGAAGTTGCAGTGAAGTAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGT
66 CTTCCTGAAGTTGCAGTGAAGAAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGT
73474042 AGA
131 AGA
* * * * *
73474045 CCGAAGATTGTAGATCTTGTCTCCCTGAAGTTGTAGTGAAGCAGATCGAAGACGGCGAATCTTGT
1 CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGT
* *
73474110 CTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCATCCTATCTGCCTAAAGTTGTAGTGGAGT
66 CTTCCTGAAGTTGCAGTGAAGAAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGT
*
73474175 AGG
131 AGA
* * *
73474178 CTGAATATTGTAGATCTTGTCTCCCCAAAGTTACAGTGGAGCAGATCGAAGACGGTGAATCTTGT
1 CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGT
* ** * *
73474243 CTTCCTGAAGTTGCAGTGAAGAAGATTTAAGTCACCGCCCTATTTCCCTAAAGTTGTAGTGGGGT
66 CTTCCTGAAGTTGCAGTGAAGAAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGT
73474308 AGA
131 AGA
* * *
73474311 CTGAAGATTGTAGATCTTATTTCCCTAAAGTTGCAGTCGAGCAGATC
1 CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATC
73474358 AAAGTCACAA
Statistics
Matches: 283, Mismatches: 30, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 283 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (133 bp):
CTGAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGACGGTGAATCTTGT
CTTCCTGAAGTTGCAGTGAAGAAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAGT
AGA
Found at i:73478420 original size:47 final size:47
Alignment explanation
Indices: 73478362--73478483 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
73478352 GCATTGGCAC
73478362 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
73478409 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
73478456 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
73478484 CCAAGGCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:73478526 original size:54 final size:55
Alignment explanation
Indices: 73478462--73478608 Score: 165
Period size: 54 Copynumber: 2.7 Consensus size: 55
73478452 TTGGTAAGAT
73478462 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTCT-TATAAGGC-
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGT-TATATAAGGCA
* * * * * *
73478516 AAGGAAATCATGTAAGACCATGTCAAGACATAGTATTGATGAGTTACTATAAGGCA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTA-TATAAGGCA
** * *
73478572 AAGG-TCCCATGTAAGACCATGCCAAGGCTTGACATTG
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
73478609 GTGAGTTCAT
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
53 1 0.01
54 38 0.51
55 32 0.43
56 4 0.05
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (55 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTATATAAGGCA
Found at i:73478614 original size:55 final size:55
Alignment explanation
Indices: 73478470--73478650 Score: 149
Period size: 55 Copynumber: 3.3 Consensus size: 55
73478460 ATAAGGATAT
* * *
73478470 CATGTAAGACCATGCCAAGGCATGGCATTGATAAG-TCTTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTTATAAGGCAAGGAAAC
* * * **
73478524 CATGTAAGACCATGTCAAGACAT-AGTATTGATGAGTTAC-TATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGGCATGA-CATTGATGAGTT-CTTATAAGGC-AAGGAAAC
* * * * *
73478579 CATGTAAGACCATGCCAAGGCTTGACATTGGTGAGTTC--ATAAGACAATGATAC
1 CATGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTTATAAGGCAAGGAAAC
** *
73478632 CACATAAGACCATGTCAAG
1 CATGTAAGACCATGCCAAG
73478651 ACATAGCAAT
Statistics
Matches: 102, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
52 3 0.03
53 24 0.24
54 30 0.29
55 39 0.38
56 6 0.06
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGGCATGACATTGATGAGTTCTTATAAGGCAAGGAAAC
Found at i:73478684 original size:108 final size:109
Alignment explanation
Indices: 73478470--73478680 Score: 246
Period size: 108 Copynumber: 2.0 Consensus size: 109
73478460 ATAAGGATAT
* * * * **
73478470 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTCTTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTCTCATAAGACAAGGAAACCACATAAGACC
* * * * * *
73478535 ATGTCAAGACATAGTATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATAGCAATGATAAGTTACAAAAAGGAAAAGGTCC
* * * * *
73478579 CATGTAAGACCATGCCAAGGCTTGACATTGGTGAGT-TCATAAGACAATGATACCACATAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTCTCATAAGACAAGGAAACCACATAAGACC
*
73478643 ATGTCAAGACATAGCAATGGTAAGTT-CAAAAAGGAAAA
66 ATGTCAAGACATAGCAATGATAAGTTACAAAAAGGAAAA
73478681 AGGTTCCCGA
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
107 9 0.11
108 43 0.51
109 32 0.38
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGACATTGATAAGTCTCATAAGACAAGGAAACCACATAAGACC
ATGTCAAGACATAGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:73480364 original size:22 final size:22
Alignment explanation
Indices: 73480319--73480382 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
73480309 CAACCCAAAG
73480319 TTTTAACCCTAAAAACACCCAA
1 TTTTAACCCTAAAAACACCCAA
* *
73480341 TTTTTACCCTAAAAA-ACACTAA
1 TTTTAACCCTAAAAACAC-CCAA
* * *
73480363 TTTTAAACATTAAAACACCC
1 TTTTAACCCTAAAAACACCC
73480383 TATTAAATTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (22 bp):
TTTTAACCCTAAAAACACCCAA
Found at i:73487932 original size:27 final size:27
Alignment explanation
Indices: 73487904--73488064 Score: 216
Period size: 27 Copynumber: 6.0 Consensus size: 27
73487894 ACAAAATGAT
* *
73487904 TGAAATACCTCTGTAGGGTAGAATTAT
1 TGAAATACCCCTGTAGGGTAGAATTAC
73487931 TGAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
73487958 TAAAATACCCCTGTATGGTAGAATTTC
1 TGAAATACCCCTGTAGGGTAGAATTAC
*
73487985 TTAAATACCCCTGTAGGGTAGAATTAC
1 TGAAATACCCCTGTAGGGTAGAATTAC
* * *
73488012 CGAAATA-CCCTCGTCGGGTAGAAATAC
1 TGAAATACCCCT-GTAGGGTAGAATTAC
*
73488039 CGAAATACCCCTGTAGGGTAGAATTA
1 TGAAATACCCCTGTAGGGTAGAATTA
73488065 ACGAGATACC
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.03
27 110 0.93
28 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (27 bp):
TGAAATACCCCTGTAGGGTAGAATTAC
Found at i:73488085 original size:27 final size:27
Alignment explanation
Indices: 73487905--73488093 Score: 184
Period size: 27 Copynumber: 7.0 Consensus size: 27
73487895 CAAAATGATT
**
73487905 GAAATA-CCTCTGTAGGGTAGAATTATT
1 GAAATACCCT-TGTAGGGTAGAATTACC
* *
73487932 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
* * * * *
73487959 AAAATACCCCTGTATGGTAGAATTTCT
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
73487986 TAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* * *
73488013 GAAATACCCTCGTCGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
73488040 GAAATACCCCTGTAGGGTAGAATTAAC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
73488067 GAGATACCCTTGT-GTGGTAAAATTACC
1 GAAATACCCTTGTAG-GGTAGAATTACC
73488094 AATTTTCCCC
Statistics
Matches: 137, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 134 0.98
28 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:73488091 original size:81 final size:81
Alignment explanation
Indices: 73487904--73488093 Score: 206
Period size: 81 Copynumber: 2.3 Consensus size: 81
73487894 ACAAAATGAT
* * ** * *
73487904 TGAAATACCTCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCC
1 TGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCC
* *
73487969 TGTATGGTAGAATTTC
66 TGTAGGGTAGAATTAC
* * * *
73487985 TTAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTCGTCGGGTAGAAATACCGAAATACCC
1 TGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCT-GTAGGGTAGAAATACCAAAATACCC
73488049 CTGTAGGGTAGAATTAAC
65 CTGTAGGGTAGAATT-AC
* *
73488067 -GAGATACCCTTGT-GTGGTAAAATTACC
1 TGAAATACCCCTGTAG-GGTAAAATTACC
73488094 AATTTTCCCC
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
80 5 0.05
81 86 0.93
82 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (81 bp):
TGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCC
TGTAGGGTAGAATTAC
Found at i:73488333 original size:28 final size:28
Alignment explanation
Indices: 73488296--73488384 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
73488286 GGAGGAAGTG
*
73488296 TTCTAGTGGCTACGCCACAAATATCTGT
1 TTCTGGTGGCTACGCCACAAATATCTGT
* *
73488324 TTCTGGTGGCTATGCCACAAATATTTG-
1 TTCTGGTGGCTACGCCACAAATATCTGT
*
73488351 TTCTGGTGGCT-CTGCCAC-AATATCTAT
1 TTCTGGTGGCTAC-GCCACAAATATCTGT
*
73488378 ATCTGGT
1 TTCTGGT
73488385 ACTCTATCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.12
27 22 0.42
28 24 0.46
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTACGCCACAAATATCTGT
Found at i:73488366 original size:27 final size:26
Alignment explanation
Indices: 73488294--73488408 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 26
73488284 ATGGAGGAAG
*
73488294 TGTTCTAGTGGCTAC-GCCACAAATATC
1 TGTTCTGGTGGCT-CTGCCAC-AATATC
* *
73488321 TGTTTCTGGTGGCTATGCCACAAATATT
1 TG-TTCTGGTGGCTCTGCCAC-AATATC
73488349 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTCTGCCACAATATC
* * ** *
73488375 TATATCTGGT-ACTCTATCACAATATT
1 TGT-TCTGGTGGCTCTGCCACAATATC
73488401 TGTTCTGG
1 TGTTCTGG
73488409 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
25 5 0.07
26 21 0.28
27 25 0.34
28 23 0.31
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:73488535 original size:6 final size:6
Alignment explanation
Indices: 73488526--73488641 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
73488516 TTGCATTCAC
* * * *
73488526 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG ATTTTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
73488576 ATTCTG ATTCTT ATTCTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
73488625 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
73488642 AGTTTTGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 6 0.07
6 69 0.81
7 5 0.06
8 5 0.06
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:73488557 original size:19 final size:19
Alignment explanation
Indices: 73488529--73488623 Score: 86
Period size: 19 Copynumber: 4.7 Consensus size: 19
73488519 CATTCACATT
73488529 CTGATTCTGATTCTATTAC
1 CTGATTCTGATTCTATTAC
*
73488548 CTGATACTGATTCTGATTTTGTCAC
1 CTGATTCTGATTCT-A---T-T-AC
*
73488573 CTAATTCTGATTCTTATT--
1 CTGATTCTGATTC-TATTAC
*
73488591 CTGATTCTGATTCTATCAC
1 CTGATTCTGATTCTATTAC
73488610 CTGATTCTGATTCT
1 CTGATTCTGATTCT
73488624 GATTCTCATT
Statistics
Matches: 62, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
17 3 0.05
18 12 0.19
19 27 0.44
20 1 0.02
21 1 0.02
22 1 0.02
23 1 0.02
24 1 0.02
25 14 0.23
26 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (19 bp):
CTGATTCTGATTCTATTAC
Found at i:73488557 original size:25 final size:25
Alignment explanation
Indices: 73488529--73488592 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
73488519 CATTCACATT
* *
73488529 CTGATTCTGATTCTATTACCTGATA
1 CTGATTCTGATTCTATCACCTAATA
* * *
73488554 CTGATTCTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTATCACCTAATA
*
73488579 CTGATTCTTATTCT
1 CTGATTCTGATTCT
73488593 GATTCTGATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTATCACCTAATA
Found at i:73488561 original size:31 final size:31
Alignment explanation
Indices: 73488526--73488629 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
73488516 TTGCATTCAC
*
73488526 ATTCTGATTCTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACCTGATTCTG
* * *
73488557 ATTCTGATTTTG-TCACCTAATT--CTGATTCTT
1 ATTCTGATTCTGAT--TCT-ATTACCTGATTCTG
*
73488588 ATTCTGATTCTGATTCTATCACCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATTCTG
73488619 ATTCTGATTCT
1 ATTCTGATTCT
73488630 CATTTTGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 48 0.81
32 3 0.05
33 3 0.05
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACCTGATTCTG
Found at i:73488595 original size:37 final size:37
Alignment explanation
Indices: 73488548--73488642 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 37
73488538 ATTCTATTAC
* * *
73488548 CTGATACTGATTCTGATTTTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* *
73488585 CTTATTCTGATTCTGATTCTATCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
* *
73488622 CTGATTCTCATTTTGATTCTA
1 CTGATTCTGATTCTGATTCTA
73488643 GTTTTGATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATCACCTAATTCTGATT
Found at i:73492537 original size:48 final size:48
Alignment explanation
Indices: 73492240--73492529 Score: 481
Period size: 48 Copynumber: 6.0 Consensus size: 48
73492230 CAAGATAAAT
* *
73492240 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
73492288 ATATGTATATATGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
73492336 ATATATATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
73492384 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
73492432 ATATATATATGTGGCAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73492480 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73492528 AT
1 AT
73492530 GTGTATATAT
Statistics
Matches: 222, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 222 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73492720 original size:37 final size:37
Alignment explanation
Indices: 73492670--73492816 Score: 258
Period size: 37 Copynumber: 4.0 Consensus size: 37
73492660 GGAAATATAT
73492670 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73492707 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73492744 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
73492781 TCCGGGTAAGACCCGATAACTACGTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
73492817 TCGAGCTAAA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73500599 original size:17 final size:18
Alignment explanation
Indices: 73500577--73500610 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73500567 CACATTGAAG
73500577 TGTTTT-ATCGAAAACCA
1 TGTTTTCATCGAAAACCA
*
73500594 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
73500611 TTCTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCA
Found at i:73502016 original size:24 final size:23
Alignment explanation
Indices: 73501970--73502023 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
73501960 TACCGTATCC
73501970 CAACTTTCAGCTTTTCAGCATTT
1 CAACTTTCAGCTTTTCAGCATTT
* *
73501993 CAACTTCTCAGCTTTTCGGTATTT
1 CAACTT-TCAGCTTTTCAGCATTT
*
73502017 CGACTTT
1 CAACTTT
73502024 TTTCGATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.44
Consensus pattern (23 bp):
CAACTTTCAGCTTTTCAGCATTT
Found at i:73503231 original size:16 final size:16
Alignment explanation
Indices: 73503206--73503237 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
73503196 AAGTTCGAGA
*
73503206 TTTTGGGATTTTTGGG
1 TTTTGAGATTTTTGGG
73503222 TTTTGAGATTTTTGGG
1 TTTTGAGATTTTTGGG
73503238 GCGTTGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.56
Consensus pattern (16 bp):
TTTTGAGATTTTTGGG
Found at i:73507177 original size:12 final size:13
Alignment explanation
Indices: 73507149--73507181 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
73507139 AATCTTTTAA
73507149 ATTTTATTTT-TT
1 ATTTTATTTTATT
73507161 ATTTTATTTTATT
1 ATTTTATTTTATT
*
73507174 TTTTTATT
1 ATTTTATT
73507182 AATAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (13 bp):
ATTTTATTTTATT
Found at i:73508372 original size:11 final size:11
Alignment explanation
Indices: 73508330--73508375 Score: 51
Period size: 10 Copynumber: 4.2 Consensus size: 11
73508320 CACACATTAG
73508330 CTTAGTTTTCAGT
1 CTTAGTTTTC--T
73508343 -TTAGTTTTCT
1 CTTAGTTTTCT
*
73508353 C-TAGGTTTCT
1 CTTAGTTTTCT
73508363 CTTAGTTTTCT
1 CTTAGTTTTCT
73508374 CT
1 CT
73508376 GCACTTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 10 0.34
11 10 0.34
12 9 0.31
ACGTcount: A:0.11, C:0.17, G:0.13, T:0.59
Consensus pattern (11 bp):
CTTAGTTTTCT
Found at i:73512791 original size:24 final size:24
Alignment explanation
Indices: 73512750--73512808 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
73512740 AGCCATATAA
* * *
73512750 CGGGAAGCTCACACAGAGCC-ATTT
1 CGGGAAGCTTATAAAGAGCCTA-TT
73512774 CGGGAAGCTTATAAAGAGCCTATT
1 CGGGAAGCTTATAAAGAGCCTATT
73512798 -GGGAAGCTTAT
1 CGGGAAGCTTAT
73512809 CCAGGCTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.35
24 19 0.61
25 1 0.03
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (24 bp):
CGGGAAGCTTATAAAGAGCCTATT
Found at i:73512875 original size:24 final size:24
Alignment explanation
Indices: 73512818--73512900 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
73512808 TCCAGGCTAT
* *
73512818 ATAACGGGAAGTTCAT-AAGAGCC
1 ATAACAGGAAGTTCATAAAGAACC
*
73512841 ATAATCGGGAAGTTC-TCAAAGAACC
1 ATAA-CAGGAAGTTCAT-AAAGAACC
* *
73512866 TTATCAGGAAGTTCATAAAGAACC
1 ATAACAGGAAGTTCATAAAGAACC
73512890 ATAACAGGAAG
1 ATAACAGGAAG
73512901 CTCCGGATAG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 5 0.10
24 36 0.72
25 9 0.18
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.19
Consensus pattern (24 bp):
ATAACAGGAAGTTCATAAAGAACC
Found at i:73513003 original size:26 final size:26
Alignment explanation
Indices: 73512943--73513003 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
73512933 AGCATTACGG
*
73512943 GAAGCTCATAAAGAGCCAATTTAACGA
1 GAAGCTCACAAAGAGCC-ATTTAACGA
73512970 GAAGCTCACAAAGAGCC-TTTAATCGA
1 GAAGCTCACAAAGAGCCATTTAA-CGA
*
73512996 GATGCTCA
1 GAAGCTCA
73513004 TAAGAGCTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 5 0.16
26 10 0.32
27 16 0.52
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCATTTAACGA
Found at i:73513008 original size:25 final size:25
Alignment explanation
Indices: 73512943--73513010 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 25
73512933 AGCATTACGG
73512943 GAAGCTCATAAAGAGCCAATTTAACGA
1 GAAGCTCAT-AAGAGCC-ATTTAACGA
*
73512970 GAAGCTCACAAAGAGCC-TTTAATCGA
1 GAAGCTCA-TAAGAGCCATTTAA-CGA
*
73512996 GATGCTCATAAGAGC
1 GAAGCTCATAAGAGC
73513011 TAATGTGTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 11 0.31
26 10 0.28
27 15 0.42
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (25 bp):
GAAGCTCATAAGAGCCATTTAACGA
Found at i:73515751 original size:46 final size:46
Alignment explanation
Indices: 73515677--73515857 Score: 152
Period size: 46 Copynumber: 3.9 Consensus size: 46
73515667 TTGGATATTT
* * * **
73515677 GAACATCCAAACTCTTTGATTTTTGTCCGAGTTCACTTATGGATGC
1 GAACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
73515723 GAACATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC
1 GAACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGC
* *
73515769 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-ACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * * * *
73515816 AAAC-GCTTGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACATC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73515858 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
45 2 0.02
46 67 0.63
47 37 0.35
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.31
Consensus pattern (46 bp):
GAACATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:73520668 original size:4 final size:4
Alignment explanation
Indices: 73520659--73520700 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
73520649 TTCGAGTTTA
73520659 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
73520701 GATTGTTGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:73520817 original size:15 final size:16
Alignment explanation
Indices: 73520797--73520826 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
73520787 AATTGAGATG
73520797 AGCATAGTAT-AAACA
1 AGCATAGTATGAAACA
73520812 AGCATAGTATGAAAC
1 AGCATAGTATGAAAC
73520827 TATGATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (16 bp):
AGCATAGTATGAAACA
Found at i:73523933 original size:49 final size:49
Alignment explanation
Indices: 73523861--73523986 Score: 207
Period size: 49 Copynumber: 2.6 Consensus size: 49
73523851 AATGATCTAT
* *
73523861 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATTGGTCACA
* *
73523910 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATTGGTCACA
*
73523959 TGTGTAGTACTAAGTGCAGGCCACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
73523987 CATACCAGAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATTGGTCACA
Found at i:73529923 original size:39 final size:39
Alignment explanation
Indices: 73529869--73529984 Score: 169
Period size: 39 Copynumber: 3.0 Consensus size: 39
73529859 TTCACTGATG
73529869 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
73529908 TATATCCGAACTTAGGCTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
73529947 TATATTCGGACTTAAGGTCCGCAGGCAACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
73529985 ATATGTCTGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:73532220 original size:44 final size:43
Alignment explanation
Indices: 73532156--73532314 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
73532146 TATGTGATTT
*
73532156 CGTGTAAGACCACGTTTGGGACGTTGGCATCGACT-TCTGTTTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATCTG-TTTA
* * * *
73532200 CGTGTAAGACCATGTCTGGGACATCGGCATCG-TATCTAATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATCT-GTTTA
** * * * * *
73532243 -GTGTAAGACCTTGTCTAGGACAG-TGGCAACGATGTTTGATTA
1 CGTGTAAGACCACGTCTGGGAC-GTTGGCATCGATATCTGTTTA
* *
73532285 CATGTAAGACCACGTCTGAGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
73532315 TGTATATGTT
Statistics
Matches: 89, Mismatches: 20, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 30 0.34
43 31 0.35
44 28 0.31
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATCTGTTTA
Found at i:73540587 original size:14 final size:14
Alignment explanation
Indices: 73540568--73540594 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73540558 ACTTCAATAT
73540568 AGACTTACCATTTG
1 AGACTTACCATTTG
73540582 AGACTTACCATTT
1 AGACTTACCATTT
73540595 ATGCATCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (14 bp):
AGACTTACCATTTG
Found at i:73544388 original size:40 final size:40
Alignment explanation
Indices: 73544344--73544591 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
73544334 CTAACTCCGG
* *
73544344 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGAAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
73544384 ATATATTACCAGCACGAAACCTACGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
* *
73544426 ATATATTACCAGCACGAAGCCTACGGGATTTAACCTGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
73544466 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
73544506 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
73544546 ATATATTACCTGCACGAAGCCTGCAGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
73544586 ATATAT
1 ATATAT
73544592 ATTATATCGA
Statistics
Matches: 196, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 158 0.81
42 38 0.19
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:73544595 original size:122 final size:121
Alignment explanation
Indices: 73544344--73544591 Score: 399
Period size: 122 Copynumber: 2.0 Consensus size: 121
73544334 CTAACTCCGG
*
73544344 ATATAGTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATATATTACCAGCACGAAACCTACG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATATATTACCAGCACGAAACCTACG
* *
73544409 GGATTTAACCCGGATATATATATTACCAGCACGAAGCCTACGGGATTTAACCTGGAT
66 GGATTTAACCCGGA-ATATATATTACCAGCACGAAGCCTACAGGATTTAACCCGGAT
* * * *
73544466 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCTGGATATATATTACCAGCACGAAGCCTGCG
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATATATTACCAGCACGAAACCTACG
* *
73544531 GGATTTAACCCGG-ATATATATTACCTGCACGAAGCCTGCAGGATTTAACCCGGAT
66 GGATTTAACCCGGAATATATATTACCAGCACGAAGCCTACAGGATTTAACCCGGAT
73544586 ATATAT
1 ATATAT
73544592 ATTATATCGA
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 44 0.38
122 73 0.62
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.24
Consensus pattern (121 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATATATTACCAGCACGAAACCTACG
GGATTTAACCCGGAATATATATTACCAGCACGAAGCCTACAGGATTTAACCCGGAT
Found at i:73552109 original size:40 final size:40
Alignment explanation
Indices: 73552065--73552356 Score: 458
Period size: 40 Copynumber: 7.2 Consensus size: 40
73552055 CTAAGTCCGG
* * * *
73552065 ATATAGTACCAGCACTAAGCCTGCGGGATTTAATCCAGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAA-CCCG-GAT
**
73552107 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCCAATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAA-CCC-GGAT
73552149 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG--AT
73552191 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
73552231 ATATATTACCAGCACGAAGCCTGCAGGATTTAACTCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
73552271 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
73552311 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
73552351 ATATAT
1 ATATAT
73552357 ATTATATCGA
Statistics
Matches: 236, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
40 124 0.53
41 3 0.01
42 109 0.46
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (40 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:73552118 original size:42 final size:41
Alignment explanation
Indices: 73552065--73552360 Score: 413
Period size: 42 Copynumber: 7.2 Consensus size: 41
73552055 CTAAGTCCGG
* *
73552065 ATATAGTACCAGCACTAAGCCTGCGGGATTTAATCCAGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAA-CCAGATAT
73552107 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCCA-ATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAA--CCAGATAT
*
73552149 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAA-CCAGATAT
* *
73552191 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCG-GAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCAGATAT
* *
73552231 ATATATTACCAGCACGAAGCCTGCAGGATTTAACTC-G-GAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAAC-CAGATAT
* *
73552271 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCG-GAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCAGATAT
*
73552311 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAA-CCAGATAT
73552353 ATATATTA
1 ATATATTA
73552361 TATCGAGAGC
Statistics
Matches: 238, Mismatches: 10, Indels: 12
0.92 0.04 0.05
Matches are distributed among these distances:
39 1 0.00
40 109 0.46
41 10 0.04
42 115 0.48
43 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (41 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCAGATAT
Found at i:73557242 original size:44 final size:45
Alignment explanation
Indices: 73557121--73557242 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
73557111 AGGAATTTAA
* *** *
73557121 AAATTCGAGCTCTTTGAGTTGGTTTTAGTTCTTGATATATGTGAG
1 AAATTCGAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAG
* * * *
73557166 AAATCCGAACTTGTTGAGTTGGTCCAAATTCATGATATATGTGAG
1 AAATTCGAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAG
* *
73557211 -CATTCGAGCTCGTTGAGTTGGTCCGAGTTCAT
1 AAATTCGAGCTCGTTGAGTTGGTCCAAGTTCAT
73557243 TATGGATGCA
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
44 26 0.42
45 36 0.58
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.38
Consensus pattern (45 bp):
AAATTCGAGCTCGTTGAGTTGGTCCAAGTTCATGATATATGTGAG
Found at i:73558639 original size:13 final size:13
Alignment explanation
Indices: 73558621--73558645 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73558611 AGGCCATGTG
73558621 AGGGACACGGGCT
1 AGGGACACGGGCT
73558634 AGGGACACGGGC
1 AGGGACACGGGC
73558646 ATGTGCTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (13 bp):
AGGGACACGGGCT
Found at i:73567588 original size:23 final size:24
Alignment explanation
Indices: 73567537--73567593 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 24
73567527 ATCACACCAG
73567537 TTTTTAATAATAAAATATTATTATA
1 TTTTTAATAATAAAATA-TATTATA
73567562 TTTTTAATAA-AAAATCA-ATT-TA
1 TTTTTAATAATAAAAT-ATATTATA
73567584 CTTTTTAATA
1 -TTTTTAATA
73567594 TAACATACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 2 0.07
23 12 0.40
24 5 0.17
25 11 0.37
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTTTAATAATAAAATATATTATA
Found at i:73571635 original size:5 final size:5
Alignment explanation
Indices: 73571625--73571662 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
73571615 AATTTGTGTG
*
73571625 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
73571663 TTTCACAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:73576034 original size:5 final size:5
Alignment explanation
Indices: 73576024--73576061 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
73576014 AATTTGTGTG
*
73576024 TTATT TTATT TTTTCT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT
73576062 TTTCACAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:73582126 original size:28 final size:28
Alignment explanation
Indices: 73582063--73582244 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
73582053 ATATTAAGTC
*
73582063 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73582090 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73582118 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73582146 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
73582174 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73582202 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
73582231 CGTACACTTAGTGC
1 CGCACACTTAGTGC
73582245 CAATCTCATG
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 104 0.73
29 18 0.13
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73585273 original size:28 final size:28
Alignment explanation
Indices: 73585241--73585305 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
73585231 ATTTACTAGA
* *
73585241 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTACGTATGCAAAATGACCATT
* *
73585269 ATACCCCTACGTATGCTAAATGACCTTT
1 ATACCCCTACGTATGCAAAATGACCATT
73585297 ATACCCCTA
1 ATACCCCTA
73585306 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTACGTATGCAAAATGACCATT
Found at i:73585452 original size:28 final size:28
Alignment explanation
Indices: 73585411--73585501 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
73585401 AGGAAGCGTC
73585411 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
73585439 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
73585467 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
73585496 CTGGTG
1 CTGGTG
73585502 ACTTTGTCAT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:73592811 original size:16 final size:15
Alignment explanation
Indices: 73592785--73592816 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
73592775 GCTAGATCGG
73592785 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
73592800 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
73592816 C
1 C
73592817 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:73593099 original size:28 final size:28
Alignment explanation
Indices: 73593064--73593128 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
73593054 ATTTACTAGA
* *
73593064 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTACGTATGCAAAATGACCATT
* * *
73593092 ATGCCCCTACGTATGCTAAATGACCTTT
1 ATACCCCTACGTATGCAAAATGACCATT
73593120 ATACCCCTA
1 ATACCCCTA
73593129 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTACGTATGCAAAATGACCATT
Found at i:73593275 original size:28 final size:28
Alignment explanation
Indices: 73593234--73593316 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
73593224 AGGAAGCGTC
73593234 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
73593262 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
73593290 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCACAAATTATCTGT
73593317 ATCTAGTGAC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:73593349 original size:56 final size:55
Alignment explanation
Indices: 73593234--73593349 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
73593224 AGGAAGCGTC
* * *
73593234 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCAC-AATTATCTGTT
* * *
73593290 CTGGTGGC-ACTGCCACAAAATATCTGTATCTAGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACAATTATCTGT-T
73593346 CTGG
1 CTGG
73593350 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 29 0.57
57 13 0.25
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACAATTATCTGTT
Found at i:73594408 original size:12 final size:12
Alignment explanation
Indices: 73594391--73594415 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73594381 TTACGAAGCG
73594391 AGAAGCAAGAGA
1 AGAAGCAAGAGA
73594403 AGAAGCAAGAGA
1 AGAAGCAAGAGA
73594415 A
1 A
73594416 TGGTCTGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.32, T:0.00
Consensus pattern (12 bp):
AGAAGCAAGAGA
Found at i:73595987 original size:28 final size:28
Alignment explanation
Indices: 73595949--73596005 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
73595939 CAATATATGT
*
73595949 AAAAACAATTTAAAGTATAAATTTATTA
1 AAAAACAATTTAAAATATAAATTTATTA
73595977 AAAAACAATTTAAAATATAAATTTATTA
1 AAAAACAATTTAAAATATAAATTTATTA
73596005 A
1 A
73596006 TATATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAAACAATTTAAAATATAAATTTATTA
Found at i:73596020 original size:19 final size:19
Alignment explanation
Indices: 73595991--73596051 Score: 88
Period size: 21 Copynumber: 3.1 Consensus size: 19
73595981 ACAATTTAAA
73595991 ATATA-AATTTATTAATAT
1 ATATATAATTTATTAATAT
73596009 ATATATAATTTATTAATATAT
1 ATATATAATTTATT-A-ATAT
73596030 ATATATAAATTTATTAATAT
1 ATATAT-AATTTATTAATAT
73596050 AT
1 AT
73596052 GTAAAAATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.13
19 8 0.21
20 7 0.18
21 11 0.28
22 8 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATATATAATTTATTAATAT
Found at i:73596179 original size:14 final size:14
Alignment explanation
Indices: 73596160--73596186 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73596150 TCCAGAAAAG
73596160 TAAATCATTTTCCA
1 TAAATCATTTTCCA
73596174 TAAATCATTTTCC
1 TAAATCATTTTCC
73596187 GAAAAACATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAATCATTTTCCA
Found at i:73598620 original size:34 final size:34
Alignment explanation
Indices: 73598546--73598622 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
73598536 GAAGTCCATA
* * *
73598546 AATATATATGTATGGCTTGGCATAATCGAAGGTG
1 AATATATATGTATAGCTTGGCATAATCAAAAGTG
* *
73598580 ATTATATATGTATAGCTTGGTATAA-CTAAAAGTG
1 AATATATATGTATAGCTTGGCATAATC-AAAAGTG
73598614 AATATATAT
1 AATATATAT
73598623 ATACATTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
33 1 0.03
34 35 0.97
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.36
Consensus pattern (34 bp):
AATATATATGTATAGCTTGGCATAATCAAAAGTG
Found at i:73605716 original size:34 final size:34
Alignment explanation
Indices: 73605676--73605786 Score: 150
Period size: 34 Copynumber: 3.3 Consensus size: 34
73605666 GAAGTAAATA
*
73605676 AATATATATGTATGGCTTGGCATAATCGAAGGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
* * * *
73605710 ATTATATATGTATAGCTTGGTATAACCGAAAGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
* * *
73605744 AATATATATGTATGGTTTGATATAATCGGAGGTG
1 AATATATATGTATGGCTTGGTATAATCGAAGGTG
73605778 AATATATAT
1 AATATATAT
73605787 ATACATTTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 65 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (34 bp):
AATATATATGTATGGCTTGGTATAATCGAAGGTG
Found at i:73616811 original size:15 final size:15
Alignment explanation
Indices: 73616791--73616846 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
73616781 ATATATTGGG
73616791 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73616806 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
73616821 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
73616836 TTTCTTTATTC
1 TTTCTTTATTC
73616847 GGTTTACTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73624422 original size:5 final size:5
Alignment explanation
Indices: 73624412--73624462 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
73624402 CTAGAAGATA
*
73624412 TTATT TTATT TTATT TTATT ATT-TA TTA-T TTATTT TTATTT TTATT
1 TTATT TTATT TTATT TTATT -TTATT TTATT TTA-TT TTA-TT TTATT
73624458 TTATT
1 TTATT
73624463 AATTTAGCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 5 0.12
5 23 0.57
6 12 0.30
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTATT
Found at i:73624451 original size:6 final size:6
Alignment explanation
Indices: 73624415--73624459 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
73624405 GAAGATATTA
73624415 TTTTA- TTTTA- TTTTAT TATTTAT TATTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT T-TTTAT T-TTTAT TTTTAT TTTTAT TTT
73624460 ATTAATTTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.26
6 15 0.39
7 13 0.34
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:73624467 original size:25 final size:25
Alignment explanation
Indices: 73624410--73624468 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
73624400 AACTAGAAGA
*
73624410 TATTATTTTATTTTATTTTATTATT
1 TATTAATTTATTTTATTTTATTATT
73624435 TATT-ATTTATTTT-TATTT-TTATTT
1 TATTAATTTATTTTAT-TTTATTA-TT
73624459 TATTAATTTA
1 TATTAATTTA
73624469 GCTTTAGCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 4 0.13
24 17 0.57
25 9 0.30
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (25 bp):
TATTAATTTATTTTATTTTATTATT
Found at i:73634222 original size:57 final size:57
Alignment explanation
Indices: 73634161--73634275 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
73634151 ATTCTATGTG
*
73634161 CAAATAAATTTAATTGTAGAATTAAAATATAACTGCAATGACTAATTGTATTGGACC
1 CAAATAAATTTAATTGTAAAATTAAAATATAACTGCAATGACTAATTGTATTGGACC
*
73634218 CAAATAAATTTAATTGTAAAATTAAAATATAATTGCAATGACTAATTGTATTGGACC
1 CAAATAAATTTAATTGTAAAATTAAAATATAACTGCAATGACTAATTGTATTGGACC
73634275 C
1 C
73634276 CTAATTGAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.34
Consensus pattern (57 bp):
CAAATAAATTTAATTGTAAAATTAAAATATAACTGCAATGACTAATTGTATTGGACC
Found at i:73642698 original size:32 final size:32
Alignment explanation
Indices: 73642657--73642721 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
73642647 GTAGTTTTTT
73642657 TATGATTGCTTCCTGAAATTTTGGTTTGGGTA
1 TATGATTGCTTCCTGAAATTTTGGTTTGGGTA
73642689 TATGATTGCTTCCTGAAATTTTGGTTTGGGTA
1 TATGATTGCTTCCTGAAATTTTGGTTTGGGTA
73642721 T
1 T
73642722 CTATTAGTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.09, G:0.25, T:0.48
Consensus pattern (32 bp):
TATGATTGCTTCCTGAAATTTTGGTTTGGGTA
Found at i:73643282 original size:18 final size:18
Alignment explanation
Indices: 73643259--73643295 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
73643249 CTACTTGTAT
73643259 AACATAAATGGCAAGAAA
1 AACATAAATGGCAAGAAA
73643277 AACATAAATGGCAAGAAA
1 AACATAAATGGCAAGAAA
73643295 A
1 A
73643296 GAAGTTCAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.11
Consensus pattern (18 bp):
AACATAAATGGCAAGAAA
Found at i:73643564 original size:22 final size:21
Alignment explanation
Indices: 73643539--73643602 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
73643529 ATATCTTGAG
73643539 AAATAAAAAATATATTTTTTAA
1 AAATAAAAAATATA-TTTTTAA
*
73643561 AAATAAAAGATA-ATTTTTAA
1 AAATAAAAAATATATTTTTAA
73643581 AATATGAAAAAA-ATAATTTTTA
1 AA-AT-AAAAAATAT-ATTTTTA
73643603 TTAGTAATGC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
20 9 0.25
21 4 0.11
22 16 0.44
23 7 0.19
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
AAATAAAAAATATATTTTTAA
Found at i:73643596 original size:23 final size:21
Alignment explanation
Indices: 73643539--73643602 Score: 76
Period size: 23 Copynumber: 3.0 Consensus size: 21
73643529 ATATCTTGAG
*
73643539 AAATAAAAAATATATTTTTTAA
1 AAATAAAAAA-ATAATTTTTAA
*
73643561 AAAT-AAAAGATAATTTTTAA
1 AAATAAAAAAATAATTTTTAA
73643581 AATATGAAAAAAATAATTTTTA
1 AA-AT-AAAAAAATAATTTTTA
73643603 TTAGTAATGC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 12 0.33
21 6 0.17
22 4 0.11
23 14 0.39
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
AAATAAAAAAATAATTTTTAA
Found at i:73645872 original size:61 final size:59
Alignment explanation
Indices: 73645769--73645884 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 59
73645759 ATTAATTTAA
* * *
73645769 TATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATCAAGATAAACATTAGATTAAATTTAATATTAAATCT
73645828 TATTAAAATAATAGAAT-TTTATCTTATAGATAAACATT-GAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTATC--A-AGATAAACATTAG-ATTAAATTTAATATTAA
73645885 TATAAATATT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
58 6 0.12
59 15 0.30
60 2 0.04
61 27 0.54
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (59 bp):
TATTAAAATAATAGAATATTTATCAAGATAAACATTAGATTAAATTTAATATTAAATCT
Found at i:73649628 original size:28 final size:28
Alignment explanation
Indices: 73649595--73649668 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
73649585 GGCCCCTTTA
*
73649595 GGCCCAATCTCATTCATATGACCCATCG
1 GGCCCAATCACATTCATATGACCCATCG
* *
73649623 GGCCCAATCACATTCATATGGCCCATTG
1 GGCCCAATCACATTCATATGACCCATCG
73649651 GGCCCAATCACATTCATA
1 GGCCCAATCACATTCATA
73649669 GTCATGCATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
GGCCCAATCACATTCATATGACCCATCG
Found at i:73650177 original size:21 final size:21
Alignment explanation
Indices: 73650148--73650187 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
73650138 AACTAAACAC
*
73650148 AAGTGACTCGCAAATCATCTT
1 AAGTCACTCGCAAATCATCTT
**
73650169 AAGTCACTCTTAAATCATC
1 AAGTCACTCGCAAATCATC
73650188 CATGATCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (21 bp):
AAGTCACTCGCAAATCATCTT
Found at i:73652134 original size:14 final size:15
Alignment explanation
Indices: 73652110--73652138 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
73652100 TTTACTTGAA
73652110 CAAAGTTAATTTTTC
1 CAAAGTTAATTTTTC
73652125 CAAA-TTAATTTTTC
1 CAAAGTTAATTTTTC
73652139 AAGAAAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.34, C:0.14, G:0.03, T:0.48
Consensus pattern (15 bp):
CAAAGTTAATTTTTC
Found at i:73652924 original size:13 final size:13
Alignment explanation
Indices: 73652906--73652930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73652896 GTAAGTGATT
73652906 TTGATGATTTTTC
1 TTGATGATTTTTC
73652919 TTGATGATTTTT
1 TTGATGATTTTT
73652931 TTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:73653748 original size:46 final size:46
Alignment explanation
Indices: 73653599--73653964 Score: 221
Period size: 46 Copynumber: 7.7 Consensus size: 46
73653589 GGGTTATTGT
* * * *
73653599 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * *
73653645 GAGCCAGTGTAACACCATGTCTGGGACATGACATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGACGA
*
73653693 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* *
73653740 -AGCCAGTGTAAAACATGTCTGGGACATGTATCGG-CT--ATGA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * * ** * *
73653782 TGTGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-AAATATGTGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGA--CGA
* * * *
73653833 GAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGATGACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GACGA
* * * * * * * *
73653882 TAGTCAATGTAAGACCATATCTGGGGCATGGCATC-GACTTGAGA-TA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
73653928 TGAGCCAGTGTAAGACCATG-CTTGGGACATGGCATCG
1 -GAGCCAGTGTAAGA-CATGTC-TGGGACAT-GCATCG
73653965 ACATTCTACC
Statistics
Matches: 252, Mismatches: 47, Indels: 40
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 12 0.05
45 15 0.06
46 65 0.26
47 61 0.24
48 29 0.12
49 31 0.12
50 33 0.13
51 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:73653953 original size:146 final size:140
Alignment explanation
Indices: 73653606--73653964 Score: 345
Period size: 140 Copynumber: 2.5 Consensus size: 140
73653596 TGTGAGCTAG
* * * *
73653606 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA-GAGCCAGTGTAACACCATG-TCTG
1 TGTAAAACATATCTGGGACATGCATC-G--ACTATGA-GATGAGCCAGTGTAAGACCATGCT-TG
* *** * * *
73653668 GGACATGACATCGGCATTGAGA--CGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT
61 GGACATGGCATCGGCACAAATATGTGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCT
* *
73653731 CGAGACGTAAGCCAG
126 CGAGACATAAGCCAA
* * * * * *
73653746 TGTAAAACATGTCTGGGACATGTATCGGCTATGAGATGTGTCAGTGTAAGACCATGTTTGGGACA
1 TGTAAAACATATCTGGGACATGCATCGACTATGAGATGAGCCAGTGTAAGACCATGCTTGGGACA
*
73653811 TGGCATCGGCACAAATATGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCTCGA
66 TGGCATCGGCACAAATATGTGAGAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGA
*
73653876 TGACA-ATAGTCAA
129 -GACATA-AGCCAA
* *
73653889 TGTAAGACCATATCTGGGGCATGGCATCGACT-TGAGATATGAGCCAGTGTAAGACCATGCTTGG
1 TGTAA-AACATATCTGGGACAT-GCATCGACTATGAG--ATGAGCCAGTGTAAGACCATGCTTGG
73653953 GACATGGCATCG
62 GACATGGCATCG
73653965 ACATTCTACC
Statistics
Matches: 180, Mismatches: 26, Indels: 20
0.80 0.12 0.09
Matches are distributed among these distances:
137 3 0.02
138 38 0.21
139 2 0.01
140 40 0.22
141 13 0.07
142 13 0.07
143 12 0.07
144 17 0.09
145 7 0.04
146 35 0.19
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (140 bp):
TGTAAAACATATCTGGGACATGCATCGACTATGAGATGAGCCAGTGTAAGACCATGCTTGGGACA
TGGCATCGGCACAAATATGTGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGA
CATAAGCCAA
Found at i:73663868 original size:21 final size:20
Alignment explanation
Indices: 73663836--73663883 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
73663826 AAATACAAAT
*
73663836 AAATAGAAAAATAAGA-ATAA
1 AAATAAAAAAATAA-ACATAA
73663856 AAACTAAAAAAATAAACATAA
1 AAA-TAAAAAAATAAACATAA
73663877 AAATAAA
1 AAATAAA
73663884 TAGACTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (20 bp):
AAATAAAAAAATAAACATAA
Found at i:73673002 original size:121 final size:121
Alignment explanation
Indices: 73672788--73673012 Score: 362
Period size: 121 Copynumber: 1.9 Consensus size: 121
73672778 CCAAAAGAAT
* * * *
73672788 CATGAGAATGAGAATAGTAATGTCATGGGTATGGGGTTTTCCTAATAACTCATTTAACACGAAAT
1 CATGAGAATGAGAATAGTAATGTCATGGGTATGAGATTTTCCTAAGAACTCATTTAACACGAAAA
*
73672853 GTATGATAACTAACCTAAGAATGCAAATTAAATGATAGACATTGGCATGGTAATAG
66 GTATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTGGCATGGTAATAG
* * *
73672909 CATGAG-ATGAGCATAGTAATGTCATGGGTATGAGATTTTCCTAAGAACTTGATTTAACATGAAA
1 CATGAGAATGAGAATAGTAATGTCATGGGTATGAGATTTTCCTAAGAAC-TCATTTAACACGAAA
73672973 AGTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
65 AGTATGATAACTAACCTAAGAATACAAATTAAATGATAGA
73673013 ATAATGAGAA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
120 38 0.40
121 57 0.60
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (121 bp):
CATGAGAATGAGAATAGTAATGTCATGGGTATGAGATTTTCCTAAGAACTCATTTAACACGAAAA
GTATGATAACTAACCTAAGAATACAAATTAAATGATAGACATTGGCATGGTAATAG
Found at i:73677458 original size:21 final size:20
Alignment explanation
Indices: 73677430--73677472 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
73677420 AGATCTTCAG
73677430 TCTTGATGG-TAAATCCGGCT
1 TCTTGATGGATAAAT-CGGCT
*
73677450 TCTTAGATGGATCAATCGGCT
1 TCTT-GATGGATAAATCGGCT
73677471 TC
1 TC
73677473 CTTGGAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (20 bp):
TCTTGATGGATAAATCGGCT
Found at i:73693573 original size:25 final size:25
Alignment explanation
Indices: 73693545--73693596 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
73693535 GTTTCTTTCC
73693545 TTAGCGTCTAAGTGTAACGATCCGA
1 TTAGCGTCTAAGTGTAACGATCCGA
73693570 TTAGCGTCTAAGTGTAACGATCCGA
1 TTAGCGTCTAAGTGTAACGATCCGA
73693595 TT
1 TT
73693597 TTTACTGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
TTAGCGTCTAAGTGTAACGATCCGA
Found at i:73693921 original size:20 final size:19
Alignment explanation
Indices: 73693888--73693942 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
73693878 TAGAGGCCCA
73693888 TTAACTTAACTAAA-ATAAGG
1 TTAA-TTAACTAAATA-AAGG
*
73693908 TTTAATTAATTAAATAAAGG
1 -TTAATTAACTAAATAAAGG
73693928 TTAATTAAGCTAAAT
1 TTAATTAA-CTAAAT
73693943 TATAATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 8 0.27
20 17 0.57
21 5 0.17
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.36
Consensus pattern (19 bp):
TTAATTAACTAAATAAAGG
Found at i:73702935 original size:31 final size:31
Alignment explanation
Indices: 73702892--73702959 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
73702882 AAATATGGCA
*
73702892 CTTTTATATTTTTGACATCATGAGTTTAAAC
1 CTTTCATATTTTTGACATCATGAGTTTAAAC
73702923 CTTTCATATTTTTGACATCATGAGTTTAAAC
1 CTTTCATATTTTTGACATCATGAGTTTAAAC
73702954 CTTTCA
1 CTTTCA
73702960 CGTGAAAAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.28, C:0.16, G:0.09, T:0.47
Consensus pattern (31 bp):
CTTTCATATTTTTGACATCATGAGTTTAAAC
Found at i:73707213 original size:13 final size:13
Alignment explanation
Indices: 73707195--73707219 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73707185 AGCACACAGG
73707195 CGTGTGACCTAAC
1 CGTGTGACCTAAC
73707208 CGTGTGACCTAA
1 CGTGTGACCTAA
73707220 GTCAGAGAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (13 bp):
CGTGTGACCTAAC
Found at i:73711766 original size:12 final size:12
Alignment explanation
Indices: 73711749--73711773 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73711739 TTATGGTCTT
73711749 ATATTATTATTA
1 ATATTATTATTA
73711761 ATATTATTATTA
1 ATATTATTATTA
73711773 A
1 A
73711774 ATAAATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:73712299 original size:11 final size:12
Alignment explanation
Indices: 73712270--73712312 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
73712260 AAAACAGGGG
73712270 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
73712282 AGAAAAAGGGAA
1 AGAAAAAGAGAA
*
73712294 AG-AAAAGAAAA
1 AGAAAAAGAGAA
73712305 AGGAAAAA
1 A-GAAAAA
73712313 CTAGAGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 8 0.31
12 14 0.54
13 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:73712302 original size:17 final size:18
Alignment explanation
Indices: 73712274--73712307 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
73712264 CAGGGGAGAA
73712274 AAAGAGAAAGAAAAAGGG
1 AAAGAGAAAGAAAAAGGG
73712292 AAAGA-AAAGAAAAAGG
1 AAAGAGAAAGAAAAAGG
73712308 AAAAACTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAGAAAGAAAAAGGG
Found at i:73713352 original size:45 final size:45
Alignment explanation
Indices: 73713302--73713407 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
73713292 CAAGTACTGT
*
73713302 TACTGTTACCGTTACTGTTATC-GATTCGA-CATTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTA-CAGATT-GAGCACTTTGTGTGTCGAA
* * *
73713347 TACTGTTGCCGTTACTGTTACAGATTTAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTGAGCACTTTGTGTGTCGAA
*
73713392 TACTGTTACTGTTACT
1 TACTGTTACCGTTACT
73713408 ACTACTGCTA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 2 0.04
45 51 0.96
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTGAGCACTTTGTGTGTCGAA
Found at i:73719119 original size:7 final size:7
Alignment explanation
Indices: 73719107--73719138 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
73719097 TTTAAACACT
73719107 TATCATG
1 TATCATG
73719114 TATCATG
1 TATCATG
73719121 TATCATG
1 TATCATG
73719128 TATCAT-
1 TATCATG
73719134 TATCA
1 TATCA
73719139 ATTATCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (7 bp):
TATCATG
Found at i:73722847 original size:11 final size:12
Alignment explanation
Indices: 73722818--73722860 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
73722808 AAAACAGGGG
73722818 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
73722830 AGAAAAAGGGAA
1 AGAAAAAGAGAA
*
73722842 AG-AAAAGAAAA
1 AGAAAAAGAGAA
73722853 AGGAAAAA
1 A-GAAAAA
73722861 CTAGAGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 8 0.31
12 14 0.54
13 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:73722850 original size:17 final size:18
Alignment explanation
Indices: 73722822--73722855 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
73722812 CAGGGGAGAA
73722822 AAAGAGAAAGAAAAAGGG
1 AAAGAGAAAGAAAAAGGG
73722840 AAAGA-AAAGAAAAAGG
1 AAAGAGAAAGAAAAAGG
73722856 AAAAACTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAGAAAGAAAAAGGG
Found at i:73723603 original size:40 final size:40
Alignment explanation
Indices: 73723557--73723642 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
73723547 AATTATGGGA
** *
73723557 TACTGAATATTGTTTTGAATACCGAATTGAACTGTGAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
* * *
73723597 TACTGAATATTGTTACGTATACTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
*
73723637 TTCTGA
1 TACTGA
73723643 TGAAACAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (40 bp):
TACTGAATATTGTTACGAATACCGAATTGAACTGTAAAAT
Found at i:73723904 original size:45 final size:46
Alignment explanation
Indices: 73723853--73723960 Score: 139
Period size: 45 Copynumber: 2.4 Consensus size: 46
73723843 CTACTGTTAT
73723853 TGTTACCGTTACTATTACCA-ATTCAACACTTTGTGTGTCGAATAC
1 TGTTACCGTTACTATTACCAGATTCAACACTTTGTGTGTCGAATAC
* * ** *
73723898 TGTTACCATTACTGTTA-CAGATTCAGTACTTTGTGTGTTGAATAC
1 TGTTACCGTTACTATTACCAGATTCAACACTTTGTGTGTCGAATAC
* *
73723943 TGTTACTGTTAATATTAC
1 TGTTACCGTTACTATTAC
73723961 TGCTACCGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
44 2 0.04
45 50 0.96
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.42
Consensus pattern (46 bp):
TGTTACCGTTACTATTACCAGATTCAACACTTTGTGTGTCGAATAC
Found at i:73729472 original size:27 final size:27
Alignment explanation
Indices: 73729438--73729670 Score: 319
Period size: 27 Copynumber: 8.6 Consensus size: 27
73729428 CAAAGTACTA
*
73729438 TCGATTTACAGAATTACCGTTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
73729465 TC-AGTTTACAGAATTACCATTTTACCC
1 TCGA-TTTACAGAATTACCATTTTACCC
73729492 TCGATTTACAGAATTACCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
*
73729519 TC-AGTTTACAGAATTACTATTTTACCC
1 TCGA-TTTACAGAATTACCATTTTACCC
* * *
73729546 TCGATTTATAGAATTATCGTTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
* ** * *
73729573 TCAATTTGTAAAATTACTATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
73729600 TCGATTTACAGAATTACCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
*
73729627 TCGATTTACAGAATTATCATTTTACCC
1 TCGATTTACAGAATTACCATTTTACCC
73729654 TC-AGTTTACAGAATTAC
1 TCGA-TTTACAGAATTAC
73729671 TGTGTAACAC
Statistics
Matches: 182, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 3 0.02
27 177 0.97
28 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (27 bp):
TCGATTTACAGAATTACCATTTTACCC
Found at i:73731146 original size:37 final size:37
Alignment explanation
Indices: 73731096--73731174 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73731086 TTATTACGAA
* * *
73731096 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73731133 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73731170 GTCTT
1 GTCTT
73731175 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73731371 original size:47 final size:47
Alignment explanation
Indices: 73731293--73731593 Score: 503
Period size: 47 Copynumber: 6.4 Consensus size: 47
73731283 CCCTTCGGGA
* * * * * *
73731293 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73731340 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73731387 CTTATCAGATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73731434 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73731481 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73731528 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73731575 CTTATCACATATATACACT
1 CTTATCACATATATACACT
73731594 GTCTTGGCTA
Statistics
Matches: 238, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 238 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73733535 original size:27 final size:27
Alignment explanation
Indices: 73733497--73733646 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
73733487 GGGTGTCACA
* *
73733497 TACTGTTTTACCCTCGATTTACAGAAT
1 TACTATTTTACCCTCGATTTATAGAAT
* * *
73733524 TACTGTTTTACCCTCGATTTTTAAAAT
1 TACTATTTTACCCTCGATTTATAGAAT
* *
73733551 TACCATTTTACCCTCGATTTATAGGAT
1 TACTATTTTACCCTCGATTTATAGAAT
** * * *
73733578 TACTGGTTTACCCTCGGTTTACAAAAT
1 TACTATTTTACCCTCGATTTATAGAAT
*
73733605 TA-TCATTTTACCATCGATTTATAGAAT
1 TACT-ATTTTACCCTCGATTTATAGAAT
73733632 TACTATTTTACCCTC
1 TACTATTTTACCCTC
73733647 AATTGTGAAA
Statistics
Matches: 99, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (27 bp):
TACTATTTTACCCTCGATTTATAGAAT
Found at i:73733588 original size:54 final size:54
Alignment explanation
Indices: 73733502--73733646 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
73733492 TCACATACTG
* **
73733502 TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTTTAAAATTACCA
1 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
* * * *
73733556 TTTTACCCTCGATTTATAGGATTACTGGTTTACCCTCGGTTTACAAAATTATCA
1 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
* *
73733610 TTTTACCATCGATTTATAGAATTACTATTTTACCCTC
1 TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTC
73733647 AATTGTGAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (54 bp):
TTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCA
Found at i:73733633 original size:81 final size:81
Alignment explanation
Indices: 73733497--73733646 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
73733487 GGGTGTCACA
* * * * *
73733497 TACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTTTAAAATTACCATTTTAC
1 TACTGGTTTACCCTCGATTTACAAAATTACTATTTTACCATCGATTTATAAAATTACCATTTTAC
73733562 CCTCGATTTATAGGAT
66 CCTCGATTTATAGGAT
* * *
73733578 TACTGGTTTACCCTCGGTTTACAAAATTA-TCATTTTACCATCGATTTATAGAATTACTATTTTA
1 TACTGGTTTACCCTCGATTTACAAAATTACT-ATTTTACCATCGATTTATAAAATTACCATTTTA
73733642 CCCTC
65 CCCTC
73733647 AATTGTGAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.43
Consensus pattern (81 bp):
TACTGGTTTACCCTCGATTTACAAAATTACTATTTTACCATCGATTTATAAAATTACCATTTTAC
CCTCGATTTATAGGAT
Found at i:73733693 original size:27 final size:27
Alignment explanation
Indices: 73733663--73733850 Score: 232
Period size: 27 Copynumber: 7.0 Consensus size: 27
73733653 GAAATTACTA
*
73733663 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * **
73733690 AAATACCCCTATAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
73733717 AAATACCCTTATAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
** *
73733744 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
73733771 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
73733798 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
73733825 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
73733851 ATTTTGCCCC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:73733722 original size:54 final size:54
Alignment explanation
Indices: 73733655--73733822 Score: 266
Period size: 54 Copynumber: 3.1 Consensus size: 54
73733645 TCAATTGTGA
*
73733655 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
73733709 AATTACTAAAATACCCTTATAGGGTAGAATTACTGAAATACCCCCGTAGGGTAG
1 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
73733763 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-AAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
73733817 AATTAC
1 AATTAC
73733823 CGAGATACCT
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 1 0.01
54 103 0.99
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:73734087 original size:27 final size:26
Alignment explanation
Indices: 73734049--73734131 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
73734039 CGGAGGAAGC
*
73734049 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
73734076 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
73734102 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
73734129 GTT
1 GTT
73734132 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:73734251 original size:22 final size:22
Alignment explanation
Indices: 73734219--73734277 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
73734209 CCCGTTATTA
*
73734219 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
73734241 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
73734263 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
73734278 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:73734472 original size:27 final size:25
Alignment explanation
Indices: 73734442--73734515 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 25
73734432 TAGGTGGGTT
*
73734442 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGACTC
73734469 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGACTC
*
73734496 TGTCACGATATCTGTTCTGG
1 TGCCAC-ATATCTGTTCTGG
73734516 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 6 0.14
27 35 0.83
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGACTC
Found at i:73734642 original size:6 final size:6
Alignment explanation
Indices: 73734633--73734728 Score: 83
Period size: 6 Copynumber: 15.8 Consensus size: 6
73734623 TTGCATTCAC
* * *
73734633 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
73734682 ATAT-TG ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
73734729 CATTTTGGTT
Statistics
Matches: 73, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
5 6 0.08
6 60 0.82
7 5 0.07
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:73734689 original size:24 final size:25
Alignment explanation
Indices: 73734633--73734699 Score: 102
Period size: 25 Copynumber: 2.7 Consensus size: 25
73734623 TTGCATTCAC
73734633 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
73734658 ATTCTGATTCTGATTCTGTTA-CTA
1 ATTCTGATTCTGATTCTGTCACCTA
73734682 ATAT-TGATTCTGATTCTG
1 AT-TCTGATTCTGATTCTG
73734700 ATTTTGTTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:73734734 original size:30 final size:30
Alignment explanation
Indices: 73734658--73734735 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
73734648 CTGTCACCTA
*
73734658 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTTTGTTACTAATATTG
*
73734688 ATTCTGATTCTGATTTTGTTACTGAT-TCTG
1 ATTCTGATTCTGATTTTGTTACTAATAT-TG
*
73734718 ATTCTGATTCTCATTTTG
1 ATTCTGATTCTGATTTTG
73734736 GTTCCAATTC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 1 0.02
30 43 0.98
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (30 bp):
ATTCTGATTCTGATTTTGTTACTAATATTG
Found at i:73735558 original size:20 final size:20
Alignment explanation
Indices: 73735522--73735567 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
73735512 AAGGGCTATT
73735522 TTGTAAA-GTTGTAAAATAAG
1 TTGTAAATGTTGTAAAAT-AG
*
73735542 TTGTAAATG-TGTGAAATAG
1 TTGTAAATGTTGTAAAATAG
73735561 TTG-AAAT
1 TTGTAAAT
73735568 TTTTAGTTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 4 0.17
19 5 0.21
20 14 0.58
21 1 0.04
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (20 bp):
TTGTAAATGTTGTAAAATAG
Found at i:73741950 original size:93 final size:93
Alignment explanation
Indices: 73741835--73742007 Score: 247
Period size: 93 Copynumber: 1.9 Consensus size: 93
73741825 CGCCCATAAG
* ***
73741835 TGAACTCGGACTCAATTCAACGAGCTCGGGTGTTCACATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
73741900 ATGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* ** * *
73741928 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGTCTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
73741993 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
73742008 CAAATATCCC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:73742003 original size:46 final size:46
Alignment explanation
Indices: 73741828--73742003 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
73741818 TGTAACCCGC
* *** *
73741828 CCATAAGTGAACTCGGACTCAATTCAACGAGCTCGGGTGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
* * *
73741874 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTACAT
* * *
73741924 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
* *
73741967 CCATAAGTGAACTCGGTCTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73742004 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 62 0.58
47 27 0.25
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTACAT
Done.