Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 226 of 290
Found at i:73752700 original size:43 final size:43
Alignment explanation
Indices: 73752652--73752851 Score: 219
Period size: 43 Copynumber: 4.7 Consensus size: 43
73752642 TATGTGTTCT
73752652 CGTGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTA
* **
73752695 CGTGTAAGACCACGTCTGGGATATTGGCATTTATATA-TGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATA-AGTGATTA
* * * * **
73752738 CGTGTAAAACCATGTCAGGGACATCGGCATCG-TATTTGATT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTA
* * * *
73752779 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATGT-AATA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTA
* *
73752821 GCATGTAAGACCACGTCTGGGACGTTGGCAT
1 -CGTGTAAGACCACGTCTGGGACATTGGCAT
73752852 TGTACGGTAT
Statistics
Matches: 131, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
41 30 0.23
42 11 0.08
43 89 0.68
44 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTA
Found at i:73752851 original size:84 final size:86
Alignment explanation
Indices: 73752654--73752851 Score: 231
Period size: 84 Copynumber: 2.3 Consensus size: 86
73752644 TGTGTTCTCG
* *
73752654 TGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTACGTGTAAGACCACGTCTGGGATAT
1 TGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTACGTGTAAGACCACGTCTGGGACAG
** * *
73752719 TGGCATTTATATATGATTACG
66 TGGCATCGATATATGAATACA
* * * * ** *
73752740 TGTAAAACCATGTCAGGGACATCGGCATCG-TATTTGATT-CGTGTAAGACCATGTCTGGGACAG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTACGTGTAAGACCACGTCTGGGACAG
*
73752803 TGGCATCGATATGT-AATAGCA
66 TGGCATCGATATATGAATA-CA
*
73752824 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
73752852 TGTACGGTAT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
83 3 0.03
84 56 0.61
85 7 0.08
86 26 0.28
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (86 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATAAGTGATTACGTGTAAGACCACGTCTGGGACAG
TGGCATCGATATATGAATACA
Found at i:73757912 original size:68 final size:67
Alignment explanation
Indices: 73757840--73757989 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73757830 CATCATGTGT
* * * *
73757840 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73757902 ATGTAG
62 ATGTAG
** * *
73757908 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73757973 AG
66 AG
73757975 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73757990 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73757945 original size:64 final size:64
Alignment explanation
Indices: 73757864--73758047 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73757854 AGACATTATG
* *
73757864 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73757928 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73757993 AA
63 AA
* * * *
73757995 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73758048 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73764347 original size:43 final size:43
Alignment explanation
Indices: 73764286--73764455 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
73764276 ATAGGATTTC
* * *
73764286 CGATATGTG-TTCTCGTGTAAGATCACATCTGGGACGTTGGCAT
1 CGATATGTGATT-ACGTGTAAGACCACATCTGGGACATTGGCAT
** * *
73764329 CGATATGTGATTACGTGTAAGACCATGTCTAGGACATCGGCAT
1 CGATATGTGATTACGTGTAAGACCACATCTGGGACATTGGCAT
* * *
73764372 TG-TATTTGATT-CGTGTAAGACC-CTATCTGGGACAATGGCAT
1 CGATATGTGATTACGTGTAAGACCAC-ATCTGGGACATTGGCAT
* * * *
73764413 CGGTATGTGA-TAGCATGTAAGACCACGTCTGGGACATTAGCAT
1 CGATATGTGATTA-CGTGTAAGACCACATCTGGGACATTGGCAT
73764456 TGTACAATAT
Statistics
Matches: 101, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 26 0.26
42 14 0.14
43 58 0.57
44 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACATCTGGGACATTGGCAT
Found at i:73764448 original size:84 final size:84
Alignment explanation
Indices: 73764298--73764459 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 84
73764288 ATATGTGTTC
** * *
73764298 TCGTGTAAGATCACATCTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGGA
1 TCGTGTAAGATCACATCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGA
*
73764363 CATCGGCATTGTATTTGAT
66 CATCAGCATTGTATTTGAT
* * *
73764382 TCGTGTAAGA-CCCTATCTGGGACAATGGCATCGGTATGTGA-TAGCATGTAAGACCACGTCTGG
1 TCGTGTAAGATCAC-ATCTGGGACAATGGCATCGATATGTGATTA-CATGTAAGACCACGTCTAG
*
73764445 GACATTAGCATTGTA
64 GACATCAGCATTGTA
73764460 CAATATATGT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 4 0.06
84 63 0.94
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (84 bp):
TCGTGTAAGATCACATCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTAGGA
CATCAGCATTGTATTTGAT
Found at i:73781032 original size:46 final size:49
Alignment explanation
Indices: 73780960--73781067 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 49
73780950 CAATTTTTTA
* * * * *
73780960 TGTAAGTTCAA-CCTTAATGGGTGACCAGACACTATTA-TC-CTATTTG
1 TGTAGGTTCAACCCTTAATAGGTGACCAAACACTATGATTCACTATTCG
*
73781006 TGTAGGTTCAACCCTT-ATAGGTGACCAAACACTATGATTCATTATTCG
1 TGTAGGTTCAACCCTTAATAGGTGACCAAACACTATGATTCACTATTCG
*
73781054 TGTAGGTTTAACCC
1 TGTAGGTTCAACCC
73781068 AAACGGGTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 28 0.54
47 6 0.12
48 18 0.35
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (49 bp):
TGTAGGTTCAACCCTTAATAGGTGACCAAACACTATGATTCACTATTCG
Found at i:73784956 original size:24 final size:24
Alignment explanation
Indices: 73784929--73784976 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
73784919 GGCTCTAACT
73784929 AATTAATTAATCAACCAATATAAG
1 AATTAATTAATCAACCAATATAAG
73784953 AATTAATTAATCAACCAATATAAG
1 AATTAATTAATCAACCAATATAAG
73784977 TTTACCTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.29
Consensus pattern (24 bp):
AATTAATTAATCAACCAATATAAG
Found at i:73790131 original size:27 final size:27
Alignment explanation
Indices: 73790101--73790174 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
73790091 GGGCAAAACT
*
73790101 GTCATTTTACCCTACAAGGGTATGTCA
1 GTCATTTTACACTACAAGGGTATGTCA
* *
73790128 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCA
* *
73790155 GTAATTTTACACTACGAGGG
1 GTCATTTTACACTACAAGGG
73790175 GATTTCGATA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCA
Found at i:73790379 original size:136 final size:135
Alignment explanation
Indices: 73790144--73790511 Score: 360
Period size: 136 Copynumber: 2.7 Consensus size: 135
73790134 TTACACTACA
* * * * * * * *
73790144 AGGGTATTTCGGTAATTTTACACTA-CG-AGGGGATTTCGATAACTTTACAAATCGATGGTGTTT
1 AGGGTATTTCAGTAATTTTAAAATATCGAAGGTGTTTTAG-TAATTTTACAAATCGATGGTGTTC
* * *
73790207 AGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT-TGAGGGTGTTTCGGTAATTTTA
65 AGTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCAG-GGGTATTTCGGTAATTTTA
73790271 CAAATTG
129 CAAATTG
*
73790278 AGGGTGTTTC-GATAATTTTAAAATATCGAAGGTGTTTTAGTAATTTTACAAATCGA-GAGTGTC
1 AGGGTATTTCAG-TAATTTTAAAATATCGAAGGTGTTTTAGTAATTTTACAAATCGATG-GTGT-
* * *
73790341 TCGGTAATTTCACAAATCG-GGTGTATTTTGATAATTTTACAAATCAGGGGTATTTTGGTAATTT
63 TCAGTAATTTCACAAATCGAGG-GTATTTCGATAATTTTACAAATCAGGGGTATTTCGGTAATTT
73790405 TACAAATTG
127 TACAAATTG
* * * * * *
73790414 AGGGTATTTCAGTAA-TTTCACA-ATCG-A-GTGTATTTCGATAATTATACAAATCGAAGGTATT
1 AGGGTATTTCAGTAATTTTAAAATATCGAAGGTGT-TTTAG-TAATTTTACAAATCGATGGT-GT
* * * *
73790475 TCGGTAATTTTACAAATCGAAGGTATTTCAATAATTT
63 TCAGTAATTTCACAAATCGAGGGTATTTCGATAATTT
73790512 CTCTTTACTA
Statistics
Matches: 197, Mismatches: 24, Indels: 26
0.80 0.10 0.11
Matches are distributed among these distances:
132 4 0.02
133 6 0.03
134 73 0.37
135 31 0.16
136 81 0.41
137 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (135 bp):
AGGGTATTTCAGTAATTTTAAAATATCGAAGGTGTTTTAGTAATTTTACAAATCGATGGTGTTCA
GTAATTTCACAAATCGAGGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGGTAATTTTACA
AATTG
Found at i:73790500 original size:80 final size:81
Alignment explanation
Indices: 73790146--73790512 Score: 370
Period size: 80 Copynumber: 4.5 Consensus size: 81
73790136 ACACTACAAG
* * *
73790146 GGTATTTCGGTAATTTTAC-ACTACGAGGGGATTTC-GATAACTTT-ACAAATCGA-TGGTGTTT
1 GGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCAG-TAA-TTTCACAAATCGAGT-GTATTT
* *
73790207 AG-TAATTTTACAAATCGAG
62 CGATAATTTTACAAATCGAA
* * * * * * * *
73790226 GGTATTTCGATAATTTTACAAATTGAGGGTGTTTCGGTAATTTTACAAATTGAGGGTGTTTCGAT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGTGTATTTCGAT
*
73790291 AATTTTAAAATATCGAA
66 AATTTTACAA-ATCGAA
* ** * * * * * *
73790308 GGTGTTTTAGTAATTTTACAAATCGAGAGTGTCTCGGTAATTTCACAAATCGGGTGTATTTTGAT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGTGTATTTCGAT
*
73790373 AATTTTACAAATC-AGG
66 AATTTTACAAATCGA-A
* *
73790389 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAC-AATCGAGTGTATTTCGAT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGTGTATTTCGAT
*
73790453 AATTATACAAATCGAA
66 AATTTTACAAATCGAA
* *
73790469 GGTATTTCGGTAATTTTACAAATCGAAGGTATTTCAATAATTTC
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTC
73790513 TCTTTACTAT
Statistics
Matches: 239, Mismatches: 40, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
79 3 0.01
80 114 0.48
81 56 0.23
82 66 0.28
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGTGTATTTCGAT
AATTTTACAAATCGAA
Found at i:73790511 original size:27 final size:27
Alignment explanation
Indices: 73790144--73790503 Score: 352
Period size: 27 Copynumber: 13.4 Consensus size: 27
73790134 TTACACTACA
*
73790144 AGGGTATTTCGGTAATTTTAC-ACTACG
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * *
73790171 AGGGGATTTCGATAACTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
73790198 ATGGTGTTT-AGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73790224 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73790251 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
73790278 AGGGTGTTTCGATAATTTTAAAATATCG
1 AGGGTATTTCGGTAATTTTACAA-ATCG
* * **
73790306 AAGGTGTTTTAGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
73790333 AGAGTGTCTCGGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73790360 -GGTGTATTTTGATAATTTTACAAATC-
1 AGG-GTATTTCGGTAATTTTACAAATCG
* *
73790386 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
73790414 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
73790440 AGTGTATTTCGATAATTATACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73790467 AAGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73790494 AAGGTATTTC
1 AGGGTATTTC
73790504 AATAATTTCT
Statistics
Matches: 273, Mismatches: 52, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
26 42 0.15
27 205 0.75
28 26 0.10
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:73790864 original size:28 final size:28
Alignment explanation
Indices: 73790826--73790887 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
73790816 TTTGGCCCCT
73790826 TTAGGCCCAATCTCATTCACATGGCCCA
1 TTAGGCCCAATCTCATTCACATGGCCCA
73790854 TTAGGCCCAATCTCATTCACATGGCCCA
1 TTAGGCCCAATCTCATTCACATGGCCCA
*
73790882 TCAGGC
1 TTAGGC
73790888 TCAACTACTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.24
Consensus pattern (28 bp):
TTAGGCCCAATCTCATTCACATGGCCCA
Found at i:73793697 original size:27 final size:27
Alignment explanation
Indices: 73793665--73793741 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
73793655 GGGCAAAACT
*
73793665 GTCATTTTACCCTACATA-GGTATGTCG
1 GTCATTTTACACTACA-AGGGTATGTCG
*
73793692 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
73793719 GTAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
73793742 TTTGATAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:73794024 original size:53 final size:54
Alignment explanation
Indices: 73793936--73794068 Score: 142
Period size: 53 Copynumber: 2.5 Consensus size: 54
73793926 AGTATTTCGG
* * * ** * *
73793936 TAATTTTACAAATCGGGGGTATTTTGGTAATTTTACAAATTGAAGGTACTTCAA
1 TAATTTCACAAATCGAGTGTATTTCAGTAAATTTACAAATCGAAGGTACTTCAA
* ** * *
73793990 TAATTTCAC-AATTGAGTGTATTTCAGTAAATTTACAAATCGGGGGTATTTCGA
1 TAATTTCACAAATCGAGTGTATTTCAGTAAATTTACAAATCGAAGGTACTTCAA
*
73794043 TAATTTTACAAATCGAGTGTATTTCA
1 TAATTTCACAAATCGAGTGTATTTCA
73794069 ATAATTTCTC
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 41 0.64
54 23 0.36
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (54 bp):
TAATTTCACAAATCGAGTGTATTTCAGTAAATTTACAAATCGAAGGTACTTCAA
Found at i:73794075 original size:27 final size:27
Alignment explanation
Indices: 73793708--73794067 Score: 330
Period size: 27 Copynumber: 13.4 Consensus size: 27
73793698 TTACACTACA
* *
73793708 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * *
73793735 AGGGTATTTTGATAATTTTAAAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * * **
73793762 ATGGTGTTTTGATAATTTTACAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73793789 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73793816 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73793843 AGGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** * *
73793870 AGCATGTTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * * *
73793897 AGAGTGTTTCGATAATTTCATAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
73793923 AGGAGTATTTCGGTAATTTTACAAATCG
1 AGG-GTATTTCGGTAATTTTACAAATCG
* * *
73793951 GGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * ** * *
73793978 AAGGTACTTCAATAATTTCAC-AATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
73794004 AGTGTATTTCAGTAAATTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
73794031 GGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
73794058 AGTGTATTTC
1 AGGGTATTTC
73794068 AATAATTTCT
Statistics
Matches: 274, Mismatches: 55, Indels: 8
0.81 0.16 0.02
Matches are distributed among these distances:
26 22 0.08
27 248 0.91
28 4 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:73796032 original size:68 final size:67
Alignment explanation
Indices: 73795960--73796111 Score: 175
Period size: 64 Copynumber: 2.3 Consensus size: 67
73795950 CATCATGTGT
** * * *
73795960 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT-GTATACCAT
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCATGATACCATGTAGGACACCAT
73796024 GTAG
64 GTAG
* * *
73796028 ACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCATGGTTCCATGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCATGATACCATGT--AGGACACCAT
73796091 GTAG
64 GTAG
73796095 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
73796112 TAAACTGGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 26 0.37
65 3 0.04
66 1 0.01
67 26 0.37
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCATGATACCATGTAGGACACCATGT
AG
Found at i:73799844 original size:377 final size:377
Alignment explanation
Indices: 73799150--73799901 Score: 1353
Period size: 377 Copynumber: 2.0 Consensus size: 377
73799140 GTGGATAATA
73799150 TGCTGAGTCATCTTCTCAAAATTACCATGGCAAATCTGTTGGCAATCAATTTCACCAGTTGCCAG
1 TGCTGAGTCATCTTCTCAAAATTACCATGGCAAATCTGTTGGCAATCAATTTCACCAGTTGCCAG
*
73799215 AACAATATTTCACTTCCTTTATTTTCCCTCTTCATTTTCTTTCTCTTCCTACACATGTATTCACA
66 AACAATATTTCACTTCCTTTATTTTCCCTCTTCATTTTCTTGCTCTTCCTACACATGTATTCACA
*
73799280 CAAAACCACACCTTTCCTCCCCAAGTGATAAAAGTAACAAATAATGACCATTATATCACAATCCA
131 CAAAACCACACATTTCCTCCCCAAGTGATAAAAGTAACAAATAATGACCATTATATCACAATCCA
*
73799345 AGCTTTATTATGCAATGTTATAAAAATATCTTAAAAATGCAAATGTATTCACTTAATTACAACCA
196 AGCTTTATTATGCAATGTTATAAAAATATCCTAAAAATGCAAATGTATTCACTTAATTACAACCA
* *
73799410 ATTAATTCTATTTAGAGGCCTTAAATATGACTCTTTTCAAGATTTATCACTCATGCACACTTGTC
261 ATTAATTCTATTTAGAGGCCTTAAATATAACTCTTTTCAAGAGTTATCACTCATGCACACTTGTC
73799475 AACGTTGCAAGATACAATAAAGCAGAATAGCTCAAAATGCATTAACATTAAG
326 AACGTTGCAAGATACAATAAAGCAGAATAGCTCAAAATGCATTAACATTAAG
* *
73799527 TGCTGAGTCATCTTCTCAAAATTACCATGGCAAATCTGTTGGCAATCAATTTCACCATTTTCCA-
1 TGCTGAGTCATCTTCTCAAAATTACCATGGCAAATCTGTTGGCAATCAATTTCACCAGTTGCCAG
* *
73799591 AGACAATATTTCACTTCCTTTATTTTCCCTCTTTATTTTCTTGCTCTTCCTCCACATGTATTCAC
66 A-ACAATATTTCACTTCCTTTATTTTCCCTCTTCATTTTCTTGCTCTTCCTACACATGTATTCAC
*
73799656 ACAAAACCACACATTTCCTCCCCAAGTGATAAAAGTAACAAATCATGACCATTATATCACAATCC
130 ACAAAACCACACATTTCCTCCCCAAGTGATAAAAGTAACAAATAATGACCATTATATCACAATCC
* *
73799721 AAGCTTTATTATGCAGTGTTATAAAAATATCCTAAAAATGCAAATGTATTCACTTAATTATAACC
195 AAGCTTTATTATGCAATGTTATAAAAATATCCTAAAAATGCAAATGTATTCACTTAATTACAACC
*
73799786 AATTAATTCTATTTAGAGGCCTTAAATATAACTCTTTTCAAGAGTTATCACTCATGCACACTTTT
260 AATTAATTCTATTTAGAGGCCTTAAATATAACTCTTTTCAAGAGTTATCACTCATGCACACTTGT
* *
73799851 CAACGTTGTAAGATACAATAAAGCAGAATAGCTCGAAATGCATTAACATTA
325 CAACGTTGCAAGATACAATAAAGCAGAATAGCTCAAAATGCATTAACATTA
73799902 GACACATTTA
Statistics
Matches: 359, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
376 1 0.00
377 358 1.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (377 bp):
TGCTGAGTCATCTTCTCAAAATTACCATGGCAAATCTGTTGGCAATCAATTTCACCAGTTGCCAG
AACAATATTTCACTTCCTTTATTTTCCCTCTTCATTTTCTTGCTCTTCCTACACATGTATTCACA
CAAAACCACACATTTCCTCCCCAAGTGATAAAAGTAACAAATAATGACCATTATATCACAATCCA
AGCTTTATTATGCAATGTTATAAAAATATCCTAAAAATGCAAATGTATTCACTTAATTACAACCA
ATTAATTCTATTTAGAGGCCTTAAATATAACTCTTTTCAAGAGTTATCACTCATGCACACTTGTC
AACGTTGCAAGATACAATAAAGCAGAATAGCTCAAAATGCATTAACATTAAG
Found at i:73802503 original size:25 final size:25
Alignment explanation
Indices: 73802475--73802527 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
73802465 ATGCTAAAAA
73802475 CTCTATTTTACTAGAGAAAAAGATC
1 CTCTATTTTACTAGAGAAAAAGATC
73802500 CTCTATTTTACTAGAGAAAAAGATC
1 CTCTATTTTACTAGAGAAAAAGATC
73802525 CTC
1 CTC
73802528 AAATGTGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (25 bp):
CTCTATTTTACTAGAGAAAAAGATC
Found at i:73807909 original size:12 final size:12
Alignment explanation
Indices: 73807892--73807931 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
73807882 TCAATAGCTT
*
73807892 CACACGGCCTAG
1 CACACGGCCTGG
73807904 CACACGGCCTGG
1 CACACGGCCTGG
73807916 CACACGGCCTGG
1 CACACGGCCTGG
73807928 CACA
1 CACA
73807932 TAGGTGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.23, C:0.42, G:0.28, T:0.07
Consensus pattern (12 bp):
CACACGGCCTGG
Found at i:73814755 original size:41 final size:40
Alignment explanation
Indices: 73814663--73814772 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 40
73814653 TCATTTTTTG
*
73814663 GAAAACGCTTCTAGTTGGAAGCATTTTCAGGTGATTTGCAA
1 GAAAACGCTTCTAGTTGGAAGCATTTTCACGTGA-TTGCAA
* * **
73814704 GAAAAAGCTTCTATTTGGAAGCATTTTCAACGTG-TTGCCT
1 GAAAACGCTTCTAGTTGGAAGCATTTTC-ACGTGATTGCAA
*
73814744 GAAAAGCGCTTCTAGTTGGAAGCACTTTC
1 GAAAA-CGCTTCTAGTTGGAAGCATTTTC
73814773 TGCCAAGTCA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 9 0.15
41 46 0.78
42 4 0.07
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (40 bp):
GAAAACGCTTCTAGTTGGAAGCATTTTCACGTGATTGCAA
Found at i:73815458 original size:101 final size:101
Alignment explanation
Indices: 73815278--73815482 Score: 365
Period size: 101 Copynumber: 2.0 Consensus size: 101
73815268 GTACACCTTA
* * *
73815278 TGGTGCAGCCGAAAAAATTAAATTTGGCGATCAAATCTAGTGATCCATGTGCGAGAAACGAATCG
1 TGGTACAGCCAAAAAAATTAAATTTGGCGATCAAATCCAGTGATCCATGTGCGAGAAACGAATCG
*
73815343 GGGTGAGAAGGGTATGAACGATTACTTTTACTCGTC
66 GGGTGAGAAGGGTATGAACGATTACTTTTAATCGTC
*
73815379 TGGTACAGCCAAAAAAATTAAATTTGGCGATCACATCCAGTGATCCATGTGCGAGAAACGAATCG
1 TGGTACAGCCAAAAAAATTAAATTTGGCGATCAAATCCAGTGATCCATGTGCGAGAAACGAATCG
73815444 GGGTGAGAAGGGTATGAACGATTACTTTTAATCGTC
66 GGGTGAGAAGGGTATGAACGATTACTTTTAATCGTC
73815480 TGG
1 TGG
73815483 AAAACCAAAG
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (101 bp):
TGGTACAGCCAAAAAAATTAAATTTGGCGATCAAATCCAGTGATCCATGTGCGAGAAACGAATCG
GGGTGAGAAGGGTATGAACGATTACTTTTAATCGTC
Found at i:73815771 original size:23 final size:24
Alignment explanation
Indices: 73815745--73815790 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
73815735 ATTCATTACA
*
73815745 ATAATTAACCTAA-TATAATAATT
1 ATAATTAACATAATTATAATAATT
73815768 ATAATTAACATAATTATAATAAT
1 ATAATTAACATAATTATAATAAT
73815791 GTTTGATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (24 bp):
ATAATTAACATAATTATAATAATT
Found at i:73815820 original size:39 final size:38
Alignment explanation
Indices: 73815764--73815868 Score: 113
Period size: 39 Copynumber: 2.7 Consensus size: 38
73815754 CTAATATAAT
* *
73815764 AATTATAATTA-ACATAATTATAATAATGTTTGATTGAA
1 AATTACAATTACA-ATAATTATAATAATGTTTGATCGAA
* * *
73815802 AATTTACAATTATAATAATTATAATAATATTTGATCGTA
1 AA-TTACAATTACAATAATTATAATAATGTTTGATCGAA
* * *
73815841 AATTATAATTACAATAGTTATAACAATG
1 AATTACAATTACAATAATTATAATAATG
73815869 GTTTCGATAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
38 23 0.41
39 32 0.57
40 1 0.02
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (38 bp):
AATTACAATTACAATAATTATAATAATGTTTGATCGAA
Found at i:73822991 original size:13 final size:13
Alignment explanation
Indices: 73822973--73822997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73822963 TGATCAAGTA
73822973 AAATTAAATTAAT
1 AAATTAAATTAAT
73822986 AAATTAAATTAA
1 AAATTAAATTAA
73822998 AATTAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATTAAATTAAT
Found at i:73823493 original size:68 final size:71
Alignment explanation
Indices: 73823391--73823533 Score: 186
Period size: 68 Copynumber: 2.1 Consensus size: 71
73823381 CAGAAATAAT
* * * **
73823391 ATTATTTTAATATTAAATTAAATTCAATACTTATCTT-AAT-AGTATTTTATT-AATTTAATATT
1 ATTATCTTAATATTAAATTAAACTCAATACTTATCTTGAATAAATATTAGATTAAATTTAATATT
73823453 AAAGTG
66 AAAGTG
* *
73823459 ATTATCTTAATATTAAATTTAAACT-AATATTTATCTTGATTAAATATTAGATTAAATTTAATAT
1 ATTATCTTAATATTAAA-TTAAACTCAATACTTATCTTGAATAAATATTAGATTAAATTTAATAT
73823523 TAAAGTG
65 TAAAGTG
73823530 ATTA
1 ATTA
73823534 AGTTTAATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
68 27 0.42
69 8 0.12
70 8 0.12
71 21 0.33
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (71 bp):
ATTATCTTAATATTAAATTAAACTCAATACTTATCTTGAATAAATATTAGATTAAATTTAATATT
AAAGTG
Found at i:73829902 original size:19 final size:19
Alignment explanation
Indices: 73829878--73829916 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
73829868 CTTTGTAACA
73829878 ACTTGTTTTTAGTGATATC
1 ACTTGTTTTTAGTGATATC
73829897 ACTTGTTTTTAGTGATATC
1 ACTTGTTTTTAGTGATATC
73829916 A
1 A
73829917 AAATAGTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.51
Consensus pattern (19 bp):
ACTTGTTTTTAGTGATATC
Found at i:73833392 original size:39 final size:37
Alignment explanation
Indices: 73833338--73833585 Score: 307
Period size: 39 Copynumber: 6.4 Consensus size: 37
73833328 CAGGACTTTA
73833338 AGCCCGGATATAATACCAGCACAAAGCTTGCGGGACTTT
1 AGCCCGGATATAATACCAGCACAAAGCTT-CGGGAC-TT
*
73833377 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCAC-AAAG-CTTCGGGACTT
* *
73833416 AGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACAAA-G-CTTCGGGACTT
* **
73833455 AGCCCGGATATAATACCAGTACGAATTCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCAC-AA-AGCTTCGGGACTT
**
73833494 AGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCAC-AA-AGCTTCGGGACTT
73833533 AGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACAAA-G-CTTCGGGACTT
*
73833572 AACCCGGATATAAT
1 AGCCCGGATATAAT
73833586 TCTCCATTAT
Statistics
Matches: 189, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
38 4 0.02
39 171 0.90
40 11 0.06
41 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (37 bp):
AGCCCGGATATAATACCAGCACAAAGCTTCGGGACTT
Found at i:73833467 original size:78 final size:78
Alignment explanation
Indices: 73833338--73833585 Score: 392
Period size: 78 Copynumber: 3.2 Consensus size: 78
73833328 CAGGACTTTA
73833338 AGCCCGGATATAATACCAGCACAAA-G-CTTGCGGGACTTTAGCCCGGATATAATACCAGCACGA
1 AGCCCGGATATAATACCAGCACAAATGCCTT-CGGGAC-TTAGCCCGGATATAATACCAGCACGA
73833401 ATGCCTTCGGGACTT
64 ATGCCTTCGGGACTT
* * *
73833416 AGCCCGGATATAACACCAACACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGTACGAAT
1 AGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAAT
*
73833481 TCCTTCGGGACTT
66 GCCTTCGGGACTT
* * *
73833494 AGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAAT
1 AGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAAT
73833559 GCCTTCGGGACTT
66 GCCTTCGGGACTT
*
73833572 AACCCGGATATAAT
1 AGCCCGGATATAAT
73833586 TCTCCATTAT
Statistics
Matches: 156, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
78 146 0.94
79 7 0.04
80 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
AGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCAGCACGAAT
GCCTTCGGGACTT
Found at i:73833518 original size:117 final size:117
Alignment explanation
Indices: 73833338--73833585 Score: 401
Period size: 117 Copynumber: 2.1 Consensus size: 117
73833328 CAGGACTTTA
*
73833338 AGCCCGGATATAATACCAGCACAAAGCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAAT
1 AGCCCGGATATAATACCAGCACAAACCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAAT
73833403 GCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
66 GCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
* *
73833455 AGCCCGGATATAATACCAGTACGAATTCCTT-CGGGAC-TTAGCCCGGATATAATACCAGCACGA
1 AGCCCGGATATAATACCAGCAC-AA-ACCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGA
* * *
73833518 ATTCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTT
64 ATGCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
*
73833572 AACCCGGATATAAT
1 AGCCCGGATATAAT
73833586 TCTCCATTAT
Statistics
Matches: 122, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
117 111 0.91
118 8 0.07
119 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (117 bp):
AGCCCGGATATAATACCAGCACAAACCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAAT
GCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
Found at i:73838407 original size:39 final size:39
Alignment explanation
Indices: 73838318--73838494 Score: 230
Period size: 39 Copynumber: 4.5 Consensus size: 39
73838308 ACAAAGCATG
* *
73838318 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
73838358 CGGGACTTAGCCCAGATATAACACCAGTACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
73838397 CGGGACTTAGCCCGGATATAACACTAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
73838436 CGGGACTTAGCCCGGATATAACACCAGCACAAACGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
73838475 CAGGAATTAGCCTGGATATA
1 CGGGACTTAGCCCGGATATA
73838495 TATCTCACAT
Statistics
Matches: 121, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 19 0.16
39 96 0.79
40 6 0.05
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:73842981 original size:39 final size:37
Alignment explanation
Indices: 73842927--73843174 Score: 298
Period size: 39 Copynumber: 6.4 Consensus size: 37
73842917 CAGGACTTTA
73842927 AGCCCGGATATAATACCAGCACAAAGCTTGCGGGACTTT
1 AGCCCGGATATAATACCAGCACAAAGCTT-CGGGAC-TT
*
73842966 AGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCAC-AAAG-CTTCGGGACTT
* *
73843005 AGCCCGGATATAACACCAACACAAATGCTTTCGGGACTT
1 AGCCCGGATATAATACCAGCACAAA-GC-TTCGGGACTT
* * **
73843044 AGCCCGAATATAATACCAGTACGAATTCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCAC-AA-AGCTTCGGGACTT
**
73843083 AGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCAC-AA-AGCTTCGGGACTT
73843122 AGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACAAA-G-CTTCGGGACTT
*
73843161 AACCCGGATATAAT
1 AGCCCGGATATAAT
73843175 TCTCCATTAT
Statistics
Matches: 186, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
38 5 0.03
39 166 0.89
40 12 0.06
41 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (37 bp):
AGCCCGGATATAATACCAGCACAAAGCTTCGGGACTT
Found at i:73843056 original size:78 final size:78
Alignment explanation
Indices: 73842927--73843174 Score: 381
Period size: 78 Copynumber: 3.2 Consensus size: 78
73842917 CAGGACTTTA
*
73842927 AGCCCGGATATAATACCAGCACAAA-GCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAA
1 AGCCCGGATATAATACCAGCACAAATGCTTTCGGGAC-TTAGCCCGGATATAATACCAGCACGAA
73842991 TGCCTTCGGGACTT
65 TGCCTTCGGGACTT
* * * *
73843005 AGCCCGGATATAACACCAACACAAATGCTTTCGGGACTTAGCCCGAATATAATACCAGTACGAAT
1 AGCCCGGATATAATACCAGCACAAATGCTTTCGGGACTTAGCCCGGATATAATACCAGCACGAAT
*
73843070 TCCTTCGGGACTT
66 GCCTTCGGGACTT
* * * *
73843083 AGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAAT
1 AGCCCGGATATAATACCAGCACAAATGCTTTCGGGACTTAGCCCGGATATAATACCAGCACGAAT
73843148 GCCTTCGGGACTT
66 GCCTTCGGGACTT
*
73843161 AACCCGGATATAAT
1 AGCCCGGATATAAT
73843175 TCTCCATTAT
Statistics
Matches: 153, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
78 143 0.93
79 10 0.07
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (78 bp):
AGCCCGGATATAATACCAGCACAAATGCTTTCGGGACTTAGCCCGGATATAATACCAGCACGAAT
GCCTTCGGGACTT
Found at i:73843107 original size:117 final size:117
Alignment explanation
Indices: 73842927--73843174 Score: 383
Period size: 117 Copynumber: 2.1 Consensus size: 117
73842917 CAGGACTTTA
*
73842927 AGCCCGGATATAATACCAGCACAAAGCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAAT
1 AGCCCGGATATAATACCAGCACAAACCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAAT
*
73842992 GCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCTTTCGGGACTT
66 GCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
* * *
73843044 AGCCCGAATATAATACCAGTACGAATTCCTT-CGGGAC-TTAGCCCGGATATAATACCAGCACGA
1 AGCCCGGATATAATACCAGCAC-AA-ACCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGA
* * *
73843107 ATTCCTTCGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTT
64 ATGCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
*
73843161 AACCCGGATATAAT
1 AGCCCGGATATAAT
73843175 TCTCCATTAT
Statistics
Matches: 119, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 108 0.91
118 8 0.07
119 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (117 bp):
AGCCCGGATATAATACCAGCACAAACCTTGCGGGACTTTAGCCCGGATATAATACCAGCACGAAT
GCCTTCGGGACTTAGCCCGGATATAACACCAACACAAATGCCTTCGGGACTT
Found at i:73844887 original size:26 final size:26
Alignment explanation
Indices: 73844836--73844889 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
73844826 CATTCCGACC
* *
73844836 CACAACTCGTGTGAGCAATCCCATTT
1 CACAACTCGTATGAGCAAGCCCATTT
* *
73844862 CACAACTCGTATGAGCAGGCCTATTT
1 CACAACTCGTATGAGCAAGCCCATTT
73844888 CA
1 CA
73844890 TAGCTCGTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (26 bp):
CACAACTCGTATGAGCAAGCCCATTT
Found at i:73849592 original size:14 final size:14
Alignment explanation
Indices: 73849573--73849602 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73849563 TATCTTATAA
73849573 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
73849587 ATATGCGTTAATCT
1 ATATGCGTGAATCT
73849601 AT
1 AT
73849603 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:73851883 original size:46 final size:46
Alignment explanation
Indices: 73851830--73851920 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
73851820 TATATATACA
* *
73851830 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
* * * *
73851876 CATCTCATACACGTTTCGCGTTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATAT
73851921 ATACACTTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCTTTACCACATATC
Found at i:73851966 original size:47 final size:47
Alignment explanation
Indices: 73851899--73852084 Score: 248
Period size: 47 Copynumber: 4.0 Consensus size: 47
73851889 TTTCGCGTTA
* * * *
73851899 GCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTG
* * *
73851946 GCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACGTTG
1 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTG
* * *
73851993 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACGTTG
1 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTG
**
73852040 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
73852085 AAAATCCTAA
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.01
47 123 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTG
Found at i:73873761 original size:30 final size:30
Alignment explanation
Indices: 73873722--73873782 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
73873712 ATCAATTTTC
*
73873722 AGGCATAAGGGTAAAATGGTCATTTTACCA
1 AGGCATAAGGGCAAAATGGTCATTTTACCA
*
73873752 AGGCCTAAGGGCAAAATGGTCATTTTACCA
1 AGGCATAAGGGCAAAATGGTCATTTTACCA
73873782 A
1 A
73873783 AGTTATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (30 bp):
AGGCATAAGGGCAAAATGGTCATTTTACCA
Found at i:73885970 original size:42 final size:42
Alignment explanation
Indices: 73885865--73886007 Score: 137
Period size: 43 Copynumber: 3.3 Consensus size: 42
73885855 CGATATGTGT
* ** * * *
73885865 TTTCCTGTAAGACCACGTCTAGGACGTTGGCATCG-ATCTGA
1 TTTCATGTAAGACCTTGTCTGGGACATTGGCATCGTATTTGA
73885906 GGTTTACATGTAAGA-CTATGTCTGGGACATTGGCATCGTATTTGA
1 --TTT-CATGTAAGACCT-TGTCTGGGACATTGGCATCGTATTTGA
* * *
73885951 TTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGA
1 TTTCATGTAAGACCTTGTCTGGGACATTGGCATCG-TATTTGA
*
73885994 TTACATGTAAGACC
1 TTTCATGTAAGACC
73886008 ACATCTGGGA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
42 26 0.31
43 28 0.33
44 25 0.30
45 5 0.06
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TTTCATGTAAGACCTTGTCTGGGACATTGGCATCGTATTTGA
Found at i:73886005 original size:43 final size:43
Alignment explanation
Indices: 73885909--73886007 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
73885899 GATCTGAGGT
*
73885909 TTACATGTAAGA-CTATGTCTGGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCTATGTCTGGGACAGTGGCATCGTATTTGA
* * *
73885951 TTTCGTGTAAGACCT-TGTCTGGGATAGTGGCATCGATATTTGA
1 TTACATGTAAGACCTATGTCTGGGACAGTGGCATCG-TATTTGA
73885994 TTACATGTAAGACC
1 TTACATGTAAGACC
73886008 ACATCTGGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 28 0.57
43 21 0.43
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TTACATGTAAGACCTATGTCTGGGACAGTGGCATCGTATTTGA
Found at i:73886015 original size:43 final size:42
Alignment explanation
Indices: 73885909--73886026 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
73885899 GATCTGAGGT
* * *
73885909 TTACATGTAAGACTATGTCTGGGACATTGGCATCGTATTTGA
1 TTACATGTAAGACCATGTCTGGGATAGTGGCATCGTATTTGA
* * *
73885951 TTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGATAGTGGCATCG-TATTTGA
**
73885994 TTACATGTAAGACCACATCTGGGAT-GTTGGCAT
1 TTACATGTAAGACCATGTCTGGGATAG-TGGCAT
73886027 TGTACGAGTT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGATAGTGGCATCGTATTTGA
Found at i:73895825 original size:27 final size:28
Alignment explanation
Indices: 73895744--73895838 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
73895734 GAGATTGGCG
* * * *
73895744 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
73895773 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
73895801 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
73895828 CTGAGTGTGCG
1 CTAAGTGTGCG
73895839 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:73895849 original size:27 final size:27
Alignment explanation
Indices: 73895769--73895851 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
73895759 TAAATTGTAC
* *
73895769 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
73895797 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
73895824 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
73895851 A
1 A
73895852 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:73901378 original size:12 final size:12
Alignment explanation
Indices: 73901361--73901386 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73901351 ACAAATTATG
73901361 TTCGGTATCATT
1 TTCGGTATCATT
73901373 TTCGGTATCATT
1 TTCGGTATCATT
73901385 TT
1 TT
73901387 GTTCGTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (12 bp):
TTCGGTATCATT
Found at i:73906590 original size:56 final size:56
Alignment explanation
Indices: 73906524--73906640 Score: 198
Period size: 56 Copynumber: 2.1 Consensus size: 56
73906514 GATATATTTG
* *
73906524 GATGTTTATATAAACCGCTTTTTTATTAATATTTTTATTATTTTACTTGAAGTGTT
1 GATGTTTATATAAACCGCTTTTTTATTAATATTTTTATTATTTTACTTAAAGTGCT
* *
73906580 GATGTTTATATAAACTGTTTTTTTATTAATATTTTTATTATTTTACTTAAAGTGCT
1 GATGTTTATATAAACCGCTTTTTTATTAATATTTTTATTATTTTACTTAAAGTGCT
73906636 GATGT
1 GATGT
73906641 AATTTAAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.27, C:0.06, G:0.11, T:0.56
Consensus pattern (56 bp):
GATGTTTATATAAACCGCTTTTTTATTAATATTTTTATTATTTTACTTAAAGTGCT
Found at i:73906678 original size:22 final size:23
Alignment explanation
Indices: 73906646--73906690 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
73906636 GATGTAATTT
73906646 AAAAATATTTTA-AAGTTTTAAA
1 AAAAATATTTTACAAGTTTTAAA
* *
73906668 AAAAATGTTTTACATGTTTTAAA
1 AAAAATATTTTACAAGTTTTAAA
73906691 CCATTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (23 bp):
AAAAATATTTTACAAGTTTTAAA
Found at i:73909601 original size:19 final size:20
Alignment explanation
Indices: 73909572--73909619 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
73909562 TCTTGTTTAG
73909572 AAATA-TTTTTAT-TTTAAA
1 AAATATTTTTTATCTTTAAA
73909590 AAATATTTTTTATCTTTAAA
1 AAATATTTTTTATCTTTAAA
73909610 AAATACTTTT
1 AAATA-TTTT
73909620 GAGAAGCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.19
19 7 0.26
20 11 0.41
21 4 0.15
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (20 bp):
AAATATTTTTTATCTTTAAA
Found at i:73914248 original size:47 final size:48
Alignment explanation
Indices: 73914127--73914251 Score: 126
Period size: 51 Copynumber: 2.5 Consensus size: 48
73914117 ATTAAATACA
*
73914127 AGATCTTGAACAAATAATATAAACAAATATTTATATTCATGTAAAAACACC
1 AGATC-TGAA-AAATAAT-TAAATAAATATTTATATTCATGTAAAAACACC
* * * * *
73914178 AGATCTAAACAAAACAAATTAAATAAATATTTATATTTAT-TTAAAACATC
1 AGATCT-GA-AAAA-TAATTAAATAAATATTTATATTCATGTAAAAACACC
*
73914228 ATATCTGAAAAATAATTAAATAAA
1 AGATCTGAAAAATAATTAAATAAA
73914252 CAAGATCTTG
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
47 11 0.18
48 4 0.06
49 1 0.02
50 14 0.23
51 28 0.45
52 4 0.06
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.31
Consensus pattern (48 bp):
AGATCTGAAAAATAATTAAATAAATATTTATATTCATGTAAAAACACC
Found at i:73917290 original size:43 final size:43
Alignment explanation
Indices: 73917224--73917397 Score: 226
Period size: 43 Copynumber: 4.1 Consensus size: 43
73917214 AAGTCTGAAC
* * **
73917224 TCAT-TCACCAGCATT-TCGCCTGCTAGGCTTGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
* * *
73917265 TCATTTCACCGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
* * *
73917308 TTATCTCACCGGTATTATAGCCTGCTAGGCCCAAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
*
73917351 TTATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATA
73917395 TCA
1 TCA
73917398 CATTTCGATA
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 4 0.03
42 9 0.08
43 99 0.85
44 5 0.04
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (43 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
Found at i:73919292 original size:14 final size:15
Alignment explanation
Indices: 73919263--73919292 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73919253 CAAAATTTAG
73919263 ACATGATACTTTCAC
1 ACATGATACTTTCAC
73919278 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
73919292 A
1 A
73919293 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:73929779 original size:41 final size:41
Alignment explanation
Indices: 73929734--73929814 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
73929724 TGTATGTGTG
*
73929734 ATTGTATGATATGTTCAGTAATGCTCCGTAACCCTATTTTA
1 ATTGTATGATATGTCCAGTAATGCTCCGTAACCCTATTTTA
*
73929775 ATTGTATGATATGTCCGGTAATGCTCCGTAACCCTATTTT
1 ATTGTATGATATGTCCAGTAATGCTCCGTAACCCTATTTT
73929815 GGCATTGAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.41
Consensus pattern (41 bp):
ATTGTATGATATGTCCAGTAATGCTCCGTAACCCTATTTTA
Found at i:73930437 original size:13 final size:14
Alignment explanation
Indices: 73930419--73930452 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
73930409 AGTCAATAAT
73930419 AATTTTTA-TATTG
1 AATTTTTATTATTG
73930432 AATTTTTATTTATTG
1 AATTTTTA-TTATTG
73930447 AATTTT
1 AATTTT
73930453 AATCAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
AATTTTTATTATTG
Found at i:73941881 original size:47 final size:48
Alignment explanation
Indices: 73941827--73941954 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 48
73941817 CTATATTAAC
*** *
73941827 TAGAACACATTAAATAAACTTAAGACATATTAAATGGTTGTA-CTAAT
1 TAGAACACATTAAATAAACTTAAGACATATTAAATGACCGAATCTAAT
* *
73941874 TAGAACACATT-AATTAACTTAAGACATATT-AATTACCGAATCTAAT
1 TAGAACACATTAAATAAACTTAAGACATATTAAATGACCGAATCTAAT
* * * *
73941920 TAGAACATATTAAATAGACTCAAGGCATATTAAAT
1 TAGAACACATTAAATAAACTTAAGACATATTAAAT
73941955 ACTTAAACTA
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 5 0.07
46 33 0.49
47 26 0.39
48 3 0.04
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (48 bp):
TAGAACACATTAAATAAACTTAAGACATATTAAATGACCGAATCTAAT
Found at i:73944502 original size:28 final size:28
Alignment explanation
Indices: 73944414--73944503 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 28
73944404 CTACAAAGGT
* *
73944414 TTCCTTATCCAAAGATTGCCATAATGGC
1 TTCCTTATCCAGAGATTTCCATAATGGC
* * * *
73944442 TTCATTATCCAGAGATTTCAACAAAGGC
1 TTCCTTATCCAGAGATTTCCATAATGGC
*
73944470 TTCCTTATCTAGAGATTTCCATAATGGC
1 TTCCTTATCCAGAGATTTCCATAATGGC
*
73944498 GTCCTT
1 TTCCTT
73944504 TTCATTAAGT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (28 bp):
TTCCTTATCCAGAGATTTCCATAATGGC
Found at i:73944647 original size:28 final size:28
Alignment explanation
Indices: 73944616--73944705 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
73944606 CAAAAGCTAT
*
73944616 CCTTTAATAGGTTCACCACAAAGGCTTG
1 CCTTTAATAGGTTCGCCACAAAGGCTTG
* * *
73944644 CCTTT-CTAGAGTTTTGCAACAAAGG-TTG
1 CCTTTAATAG-G-TTCGCCACAAAGGCTTG
* *
73944672 TCCTTTAGTAGGTCCGCCACAAAGGCTTG
1 -CCTTTAATAGGTTCGCCACAAAGGCTTG
73944701 CCTTT
1 CCTTT
73944706 CCAAAGTTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
27 3 0.06
28 24 0.49
29 19 0.39
30 3 0.06
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (28 bp):
CCTTTAATAGGTTCGCCACAAAGGCTTG
Found at i:73944666 original size:29 final size:29
Alignment explanation
Indices: 73944631--73944725 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
73944621 AATAGGTTCA
73944631 CCACAAAGGCTTGCCTTTCTAGAGTTTTG
1 CCACAAAGGCTTGCCTTTCTAGAGTTTTG
* * **
73944660 CAACAAAGG-TTGTCC-TT-TAGTAGGTCCG
1 CCACAAAGGCTTG-CCTTTCTAG-AGTTTTG
* * *
73944688 CCACAAAGGCTTGCCTTTCCAAAGTTTTT
1 CCACAAAGGCTTGCCTTTCTAGAGTTTTG
73944717 CCACAAAGG
1 CCACAAAGG
73944726 ATTTTTTTCT
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
27 3 0.06
28 19 0.38
29 27 0.54
30 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (29 bp):
CCACAAAGGCTTGCCTTTCTAGAGTTTTG
Found at i:73944724 original size:57 final size:57
Alignment explanation
Indices: 73944549--73944725 Score: 194
Period size: 57 Copynumber: 3.1 Consensus size: 57
73944539 GAGTCTTGCC
* * * * * * *
73944549 ACAAAGGC-ATCATTTAAGAGGTTCACCGCAAAGGCTTACCTTTCCAAATTTTTTCT
1 ACAAAGGCTATCCTTTAATAGGTCCACCACAAAGGCTTGCCTTTCCAAAGTTTTTCA
* * * * *
73944605 ACAAAAGCTATCCTTTAATAGGTTCACCACAAAGGCTTGCCTTTCTAGAGTTTTGCA
1 ACAAAGGCTATCCTTTAATAGGTCCACCACAAAGGCTTGCCTTTCCAAAGTTTTTCA
* * * * *
73944662 ACAAAGGTTGTCCTTTAGTAGGTCCGCCACAAAGGCTTGCCTTTCCAAAGTTTTTCC
1 ACAAAGGCTATCCTTTAATAGGTCCACCACAAAGGCTTGCCTTTCCAAAGTTTTTCA
73944719 ACAAAGG
1 ACAAAGG
73944726 ATTTTTTTCT
Statistics
Matches: 100, Mismatches: 20, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
56 7 0.07
57 93 0.93
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (57 bp):
ACAAAGGCTATCCTTTAATAGGTCCACCACAAAGGCTTGCCTTTCCAAAGTTTTTCA
Found at i:73944940 original size:53 final size:52
Alignment explanation
Indices: 73944829--73944940 Score: 129
Period size: 53 Copynumber: 2.2 Consensus size: 52
73944819 TTAACCTTAA
* * *
73944829 ATTTT-TTCCATATGATGCCATAACCCACTAGTTACGATCTTACACAATATG
1 ATTTTCTTCCATATGATGCCATAACCCACCAGTTACGATATTACACAATATC
* * **
73944880 ATCTTCTTCCAATATGATGTCATAACCCACCAGTTAC-AGTATTACATGATATC
1 ATTTTCTTCC-ATATGATGCCATAACCCACCAGTTACGA-TATTACACAATATC
73944933 ATTTTCTT
1 ATTTTCTT
73944941 TAGTGCCATG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
51 4 0.08
52 5 0.10
53 41 0.82
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (52 bp):
ATTTTCTTCCATATGATGCCATAACCCACCAGTTACGATATTACACAATATC
Found at i:73955427 original size:47 final size:47
Alignment explanation
Indices: 73955355--73955495 Score: 232
Period size: 47 Copynumber: 3.0 Consensus size: 47
73955345 GTTGAATTTA
73955355 AAGCTTGTTAAA-TTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
73955401 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
* * * *
73955448 AAGCTTGTTAAATTTGCCCTTATTATTT-CAGATAAGTTTCTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
73955494 AA
1 AA
73955496 AGAAAATTTT
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
46 30 0.33
47 60 0.67
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:73956362 original size:44 final size:45
Alignment explanation
Indices: 73956298--73956428 Score: 214
Period size: 44 Copynumber: 3.0 Consensus size: 45
73956288 ATATCGCACA
*
73956298 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
73956343 ATACTATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
73956387 ATACTATTCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
73956429 ATGAATTCGG
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
43 11 0.13
44 58 0.71
45 13 0.16
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:73956986 original size:16 final size:18
Alignment explanation
Indices: 73956955--73956987 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
73956945 AACTCGTCAC
73956955 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
73956973 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
73956988 AGCTTGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:73962579 original size:48 final size:48
Alignment explanation
Indices: 73962403--73962583 Score: 148
Period size: 48 Copynumber: 3.8 Consensus size: 48
73962393 TGGTTAGTGA
* * * * * *
73962403 GATCCCATCTAAGACCATGTCAGGGACATGGCATCGGCATCCGAGACGA
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CCGATATGT
* * * *
73962452 GAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCACCGGTATGT
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGT
* ** * * * * * *
73962500 GATCCCGTGTAAGACCATATCAAGAATATGGCTTTGGTATC-ATATTGT
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATA-TGT
**
73962548 GATTTCGTGTAAGACCATGTCTGGGACATGGCATCG
1 GATCCCGTGTAAGACCATGTCTGGGACATGGCATCG
73962584 ATATGAGGTC
Statistics
Matches: 99, Mismatches: 32, Indels: 3
0.74 0.24 0.02
Matches are distributed among these distances:
47 2 0.02
48 64 0.65
49 33 0.33
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (48 bp):
GATCCCGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGT
Found at i:73967162 original size:10 final size:11
Alignment explanation
Indices: 73967137--73967165 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
73967127 CCAAAAACAT
73967137 AAAAATGAGAC
1 AAAAATGAGAC
73967148 AAAAATGAGAC
1 AAAAATGAGAC
73967159 AAAAATG
1 AAAAATG
73967166 CACTTACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.66, C:0.07, G:0.17, T:0.10
Consensus pattern (11 bp):
AAAAATGAGAC
Found at i:73972708 original size:6 final size:6
Alignment explanation
Indices: 73972697--73972724 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
73972687 TCGTGTCCTA
73972697 GCCCAT GCCCAT GCCCAT GCCCAT GCCC
1 GCCCAT GCCCAT GCCCAT GCCCAT GCCC
73972725 GTGTAACTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.54, G:0.18, T:0.14
Consensus pattern (6 bp):
GCCCAT
Found at i:73979159 original size:29 final size:29
Alignment explanation
Indices: 73979117--73979179 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
73979107 CGCCTAAAAA
73979117 CAAACCAAAATAACGCCAGCACTTGGATT
1 CAAACCAAAATAACGCCAGCACTTGGATT
73979146 CAAACCAAAATAACGCCAGCACTTGGATT
1 CAAACCAAAATAACGCCAGCACTTGGATT
73979175 CAAAC
1 CAAAC
73979180 TTGCGCCCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.43, C:0.29, G:0.13, T:0.16
Consensus pattern (29 bp):
CAAACCAAAATAACGCCAGCACTTGGATT
Found at i:73981677 original size:27 final size:27
Alignment explanation
Indices: 73981652--73981983 Score: 334
Period size: 27 Copynumber: 12.4 Consensus size: 27
73981642 TTTAGTTTAC
73981652 AAAATTACCAAAATACCCTTGG-TT-T
1 AAAATTACCAAAATACCCTTGGTTTGT
73981677 ACAAATTA-CAAAATA-CCTCTGGTTTGT
1 A-AAATTACCAAAATACCCT-TGGTTTGT
* *
73981704 AAAATTACCAAAATACACTTGGTTTAT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
73981731 AAAATCACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
73981758 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
73981785 AAAAGTATCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
73981812 AAAATTACCAAAATACCCCTT-GTTTGT
1 AAAATTACCAAAATA-CCCTTGGTTTGT
* * *
73981839 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
73981866 AAAATAACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* ** ***
73981893 GAAATTACTGAAATACCCTCAACTTT-T
1 AAAATTACCAAAATACCCT-TGGTTTGT
*** * **
73981920 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
73981947 AAAATTACCAAAGTACCCTTGATTTAT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
73981974 AGAATTACCA
1 AAAATTACCA
73981984 TTTTACCCTC
Statistics
Matches: 258, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
24 3 0.01
25 11 0.04
26 20 0.08
27 214 0.83
28 10 0.04
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:73982033 original size:27 final size:27
Alignment explanation
Indices: 73982010--73982467 Score: 574
Period size: 27 Copynumber: 17.0 Consensus size: 27
73982000 CAAAATTATT
73982010 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73982037 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73982064 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * * *
73982091 AAAATAACCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73982118 GAAATACCCTTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73982145 GAAATACCCCTGTAGGGTAGAATTTCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73982172 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73982199 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73982226 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73982253 GAAATACCCCTGTAGGATAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73982280 GAAATACCCCTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73982307 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73982334 AAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73982361 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73982388 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73982415 GAAATACCCTTGTAGGGTAAAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
73982442 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
73982468 TATTTTACCC
Statistics
Matches: 383, Mismatches: 48, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 383 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:73982859 original size:27 final size:26
Alignment explanation
Indices: 73982807--73982866 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
73982797 ATATATATAT
*
73982807 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
73982833 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
73982860 ATATCTG
1 ATATCTG
73982867 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:73984995 original size:27 final size:27
Alignment explanation
Indices: 73984971--73985301 Score: 348
Period size: 27 Copynumber: 12.3 Consensus size: 27
73984961 TTAGTTTACG
73984971 AAATTACCAAAATACCCTTGG-TT-TA
1 AAATTACCAAAATACCCTTGGTTTGTA
73984996 CAAATTACCAAAATA-CCTCTGGTTTGTA
1 -AAATTACCAAAATACCCT-TGGTTTGTA
* * *
73985024 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
73985051 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
73985078 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
73985105 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
73985132 AAATTACCAAAATACCCCTT-GTTTGTA
1 AAATTACCAAAATA-CCCTTGGTTTGTA
* * *
73985159 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
73985186 AAATAACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
73985213 AAATTACTAAAATACCCTCGACTTT-TA
1 AAATTACCAAAATACCCTTG-GTTTGTA
*** * **
73985240 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
73985267 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
73985294 GAATTACC
1 AAATTACC
73985302 GTTTTACCCT
Statistics
Matches: 259, Mismatches: 38, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
25 3 0.01
26 23 0.09
27 220 0.85
28 13 0.05
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:73985336 original size:27 final size:27
Alignment explanation
Indices: 73985022--73985337 Score: 112
Period size: 27 Copynumber: 11.7 Consensus size: 27
73985012 CTCTGGTTTG
* *
73985022 TAAAATTACT-AGAATACCCTTGGTTTA
1 TAAAATTACTGA-AATACCCTCGATTTA
* ** * *
73985049 TAAAATCACCAAAATACCC-CTGGTTTG
1 TAAAATTACTGAAATACCCTC-GATTTA
** * * *
73985076 TAAAATTACCAAAATACCCTTGGTTTG
1 TAAAATTACTGAAATACCCTCGATTTA
* * *
73985103 TAAAATTA-TCAAAATACCCT-TAGTTTG
1 TAAAATTACT-GAAATACCCTCGA-TTTA
** * *
73985130 TAAAATTACCAAAATACCCCTTG-TTTG
1 TAAAATTACTGAAATA-CCCTCGATTTA
* * *
73985157 TAAAATTA-TCAAAATACCC-CTAGTTTG
1 TAAAATTACT-GAAATACCCTCGA-TTTA
* ** *
73985184 TAAAATAACCAAAATACCC-CTGATTTG
1 TAAAATTACTGAAATACCCTC-GATTTA
* *
73985211 TGAAATTACTAAAATACCCTCGACTTT-
1 TAAAATTACTGAAATACCCTCGA-TTTA
* * *
73985238 TAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTA
* *
73985265 TAAAATTAC-CAAAGTACCCTTGATTTA
1 TAAAATTACTGAAA-TACCCTCGATTTA
* * ***
73985292 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACTGAAATACCCTCGATTTA
* *
73985319 CAAAATTATTGAAATACCC
1 TAAAATTACTGAAATACCC
73985338 CTGTAGGGTA
Statistics
Matches: 229, Mismatches: 42, Indels: 36
0.75 0.14 0.12
Matches are distributed among these distances:
26 8 0.03
27 211 0.92
28 10 0.04
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTA
Found at i:73985352 original size:27 final size:27
Alignment explanation
Indices: 73985329--73985787 Score: 603
Period size: 27 Copynumber: 17.0 Consensus size: 27
73985319 CAAAATTATT
*
73985329 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73985356 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
73985383 AAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73985410 GAAATACCCTTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
73985437 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73985464 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73985491 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73985518 GAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
** * *
73985545 GAAATACCGTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73985572 GAAATACCCCTGTAGGATAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73985599 GAAATACCCCTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73985626 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73985653 AAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73985680 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73985707 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
73985734 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
73985761 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
73985788 ATTTTACCCC
Statistics
Matches: 383, Mismatches: 49, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 383 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:73986263 original size:6 final size:6
Alignment explanation
Indices: 73986232--73986288 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
73986222 TTGCATTCAC
* *
73986232 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
73986280 AGTTCTG AT
1 A-TTCTG AT
73986289 AATGTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 35 0.83
7 4 0.10
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:73988253 original size:2 final size:2
Alignment explanation
Indices: 73988246--73988313 Score: 109
Period size: 2 Copynumber: 34.0 Consensus size: 2
73988236 ATTTTTGAAA
*
73988246 AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
73988288 AA AG AG AG TG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
73988314 TTGTTCTGGT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.49, C:0.00, G:0.50, T:0.01
Consensus pattern (2 bp):
AG
Found at i:73991195 original size:57 final size:58
Alignment explanation
Indices: 73991095--73991241 Score: 172
Period size: 57 Copynumber: 2.5 Consensus size: 58
73991085 CGAGCCACAT
* * *
73991095 ATCATATTACAGGATTACCAGTCCAGGCTAAATCCATTATGTAACGTATGCTCAAAAGAG
1 ATCATA-T-CAGGATTACCAGTCCAGGCTAAACCCAGTATGTAACATATGCTCAAAAGAG
* * * *
73991155 CTCA-ATTAGGATTACCAGTCCAGGCTAAACCCTAGT-TGTAACATATGCTCGAGAGAG
1 ATCATATCAGGATTACCAGTCCAGGCTAAACCC-AGTATGTAACATATGCTCAAAAGAG
* *
73991212 ATTATATCAGGATTACCCGTCCAGGCTAAA
1 ATCATATCAGGATTACCAGTCCAGGCTAAA
73991242 TCCTTTCTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
57 44 0.59
58 26 0.35
59 1 0.01
60 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (58 bp):
ATCATATCAGGATTACCAGTCCAGGCTAAACCCAGTATGTAACATATGCTCAAAAGAG
Found at i:73992605 original size:49 final size:49
Alignment explanation
Indices: 73992533--73992633 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 49
73992523 TAGAAGATAA
73992533 ATTTTCACACAAGGTATGGGCACTACGAATTCCTGGTTTTGCCCTTTGG
1 ATTTTCACACAAGGTATGGGCACTACGAATTCCTGGTTTTGCCCTTTGG
* * *
73992582 ATTTTCACACAAGGTATGGGCACTATGAATTCTTGGTTTTTCCCTTTGG
1 ATTTTCACACAAGGTATGGGCACTACGAATTCCTGGTTTTGCCCTTTGG
73992631 ATT
1 ATT
73992634 AACAAATGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (49 bp):
ATTTTCACACAAGGTATGGGCACTACGAATTCCTGGTTTTGCCCTTTGG
Found at i:73997110 original size:10 final size:10
Alignment explanation
Indices: 73997081--73997125 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
73997071 TAAGTAATTA
73997081 AGCTAAAATG
1 AGCTAAAATG
*
73997091 AAGCTGAAATG
1 -AGCTAAAATG
*
73997102 AGCTCAAATG
1 AGCTAAAATG
*
73997112 AGCTAAAATA
1 AGCTAAAATG
73997122 AGCT
1 AGCT
73997126 TAAGTGAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (10 bp):
AGCTAAAATG
Found at i:73997120 original size:20 final size:21
Alignment explanation
Indices: 73997079--73997125 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
73997069 ATTAAGTAAT
*
73997079 TAAGCTAAAATGAAGCTGAAA
1 TAAGCTAAAATGAAGCTAAAA
* *
73997100 TGAGCTCAAATG-AGCTAAAA
1 TAAGCTAAAATGAAGCTAAAA
73997120 TAAGCT
1 TAAGCT
73997126 TAAGTGAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (21 bp):
TAAGCTAAAATGAAGCTAAAA
Found at i:74002840 original size:42 final size:43
Alignment explanation
Indices: 74002679--74002840 Score: 154
Period size: 42 Copynumber: 3.8 Consensus size: 43
74002669 TATCATACCA
* **
74002679 ATGCCATATCCCAGATATGGTCTTACATGGGA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGATAGTCTCATATCG
* * * * * *
74002721 ATGCCAATAGCCCAGCTATGGTCTTACACGAAACT-TTATTTCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGATAGTCTCATATCG
* * * *
74002764 AGGCTATAACCCAGATATGGCCTTACACGA-AGTCTCATA-CTG
1 ATGCCATATCCCAGATATGGTCTTACACGATAGTCTCATATC-G
74002806 ATGCCATATCCCAGATATGGTCTTACAC-ATAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGATAGTCT
74002841 TAGTAACCCT
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 4 0.04
42 60 0.62
43 31 0.32
44 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTACACGATAGTCTCATATCG
Found at i:74006201 original size:36 final size:35
Alignment explanation
Indices: 74006154--74006318 Score: 152
Period size: 36 Copynumber: 4.6 Consensus size: 35
74006144 ACTCTCTAGT
*
74006154 TTGGTGTGTTTCGGTTGGATTAGCTTTTCGGAGCCA
1 TTGGTGTGTTTCGGTTGGATTAGCTCTTCGGAG-CA
74006190 TTGGTGTGTTTCGGTTGGATTAGCTCTTCGGAGCCA
1 TTGGTGTGTTTCGGTTGGATTAGCTCTTCGGAG-CA
* * * ** *
74006226 TCGGTATGTGTCGAATGGATTAGCTCTTATGG-GCA
1 TTGGTGTGTTTCGGTTGGATTAGCTCTT-CGGAGCA
* * * **
74006261 TTTGGTTTGTTTCGGATGGACTAGCTCTTATGAGCA
1 -TTGGTGTGTTTCGGTTGGATTAGCTCTTCGGAGCA
* *
74006297 TCTGGTGTGTTTTGGTGGGATT
1 T-TGGTGTGTTTCGGTTGGATT
74006319 GTCGATGTAC
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
35 4 0.04
36 100 0.94
37 2 0.02
ACGTcount: A:0.13, C:0.13, G:0.33, T:0.41
Consensus pattern (35 bp):
TTGGTGTGTTTCGGTTGGATTAGCTCTTCGGAGCA
Found at i:74014862 original size:7 final size:7
Alignment explanation
Indices: 74014850--74014874 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
74014840 AGTAAAAAGA
74014850 TATTTAT
1 TATTTAT
74014857 TATTTAT
1 TATTTAT
74014864 TATTTAT
1 TATTTAT
74014871 TATT
1 TATT
74014875 AAGTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTAT
Found at i:74015189 original size:13 final size:13
Alignment explanation
Indices: 74015157--74015182 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74015147 AAGTAAGGAG
74015157 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
74015170 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
74015183 GGAGAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAA
Found at i:74016083 original size:23 final size:22
Alignment explanation
Indices: 74016056--74016125 Score: 74
Period size: 21 Copynumber: 3.3 Consensus size: 22
74016046 CAAGCACTTT
74016056 ATGTGTCGTATATTAGGCACCTC
1 ATGTGTCGT-TATTAGGCACCTC
*
74016079 GTGTGTCG-TATTAGGCACCTC
1 ATGTGTCGTTATTAGGCACCTC
* * *
74016100 ATTTGTCGTT-TCAGGCA-CTT
1 ATGTGTCGTTATTAGGCACCTC
74016120 ATGTGT
1 ATGTGT
74016126 TATATACTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 7 0.17
21 25 0.62
22 1 0.03
23 7 0.17
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (22 bp):
ATGTGTCGTTATTAGGCACCTC
Found at i:74022280 original size:39 final size:39
Alignment explanation
Indices: 74022220--74022298 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
74022210 TCAAACCACC
** * *
74022220 ATGATCATTCAATGGAGAGGTAGGTCGAGCTTAGACTAT
1 ATGATCATTCAACAGAAAGGTAAGTCGAGCTTAGACTAT
74022259 ATGATCATTCAACAGAAAGGTAAGTCGAGCTTAGACTAT
1 ATGATCATTCAACAGAAAGGTAAGTCGAGCTTAGACTAT
74022298 A
1 A
74022299 AATAAGAGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (39 bp):
ATGATCATTCAACAGAAAGGTAAGTCGAGCTTAGACTAT
Found at i:74028788 original size:17 final size:18
Alignment explanation
Indices: 74028766--74028799 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74028756 CACATTAAAG
74028766 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
74028783 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
74028800 CTTCTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:74031540 original size:8 final size:8
Alignment explanation
Indices: 74031527--74031559 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
74031517 CTAGATCGGT
74031527 AAAAGCCG
1 AAAAGCCG
74031535 AAAAGCCG
1 AAAAGCCG
*
74031543 AAATGCCG
1 AAAAGCCG
74031551 AAAAGCCG
1 AAAAGCCG
74031559 A
1 A
74031560 TATTTTGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.24, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:74031868 original size:28 final size:28
Alignment explanation
Indices: 74031805--74031869 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
74031795 ATTTACTAGA
* *
74031805 ATACCCCCATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
74031833 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
74031861 ATACCCCTA
1 ATACCCCTA
74031870 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:74032031 original size:27 final size:28
Alignment explanation
Indices: 74031985--74032064 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
74031975 CTGATGGCTA
* *
74031985 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
**
74032013 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
74032040 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
74032065 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:74032075 original size:29 final size:28
Alignment explanation
Indices: 74031985--74032075 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
74031975 CTGATGGCTA
* * *
74031985 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
74032013 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
74032040 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
74032069 TGTCACA
1 TGCCACA
74032076 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:74032083 original size:55 final size:56
Alignment explanation
Indices: 74031985--74032089 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
74031975 CTGATGGCTA
* * *
74031985 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
74032040 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
74032090 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:74036243 original size:19 final size:19
Alignment explanation
Indices: 74036210--74036246 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74036200 CAATAACTAA
*
74036210 CATAACCATCGTAGGCCAT
1 CATAACCATCATAGGCCAT
*
74036229 CATAACCATTATAGGCCA
1 CATAACCATCATAGGCCA
74036247 ACATTCAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.22
Consensus pattern (19 bp):
CATAACCATCATAGGCCAT
Found at i:74039521 original size:39 final size:39
Alignment explanation
Indices: 74039478--74039552 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
74039468 ATCAAACTCA
* * *
74039478 AATAACTATTTAATTATTAGTCTAAATTTTGTACCATCC
1 AATAACAATTTAATCACTAGTCTAAATTTTGTACCATCC
*
74039517 AATAACAATTTTATCACTAGTCTAAATTTTGTACCA
1 AATAACAATTTAATCACTAGTCTAAATTTTGTACCA
74039553 CCCATTAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.41
Consensus pattern (39 bp):
AATAACAATTTAATCACTAGTCTAAATTTTGTACCATCC
Found at i:74047490 original size:32 final size:32
Alignment explanation
Indices: 74047444--74047515 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
74047434 CCATGTGCCC
* *
74047444 CACATAGCTTACCCAAACAGGCCACAAAATCC
1 CACACAGCTTACCCAAACAGGCCACAAAATCA
* * * *
74047476 CATACAGCTTACCCACACGGGCTACAAAATCA
1 CACACAGCTTACCCAAACAGGCCACAAAATCA
74047508 CACACAGC
1 CACACAGC
74047516 CCTGTGCCCC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.39, C:0.38, G:0.11, T:0.12
Consensus pattern (32 bp):
CACACAGCTTACCCAAACAGGCCACAAAATCA
Found at i:74048091 original size:20 final size:21
Alignment explanation
Indices: 74048063--74048125 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 21
74048053 CAAAAATCTC
*
74048063 AAGAGAACAAA-AAAGAACAA
1 AAGAAAACAAAGAAAGAACAA
* *
74048083 AAGAAAACAAAGAAATAAGAA
1 AAGAAAACAAAGAAAGAACAA
*
74048104 AAGAAGAA-TAAG-AAGAACAA
1 AAGAA-AACAAAGAAAGAACAA
74048124 AA
1 AA
74048126 CCAAAATTAG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 18 0.51
21 15 0.43
22 2 0.06
ACGTcount: A:0.75, C:0.06, G:0.16, T:0.03
Consensus pattern (21 bp):
AAGAAAACAAAGAAAGAACAA
Found at i:74056339 original size:24 final size:23
Alignment explanation
Indices: 74056307--74056368 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 23
74056297 AAAATCCAAT
* * *
74056307 GCACTATGTGTGCAGTTTACTATG
1 GCACTATGTGTGCAGTGTAAT-TA
74056331 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGC-AGTGTAATTA
74056355 GCACTATGTGTGCA
1 GCACTATGTGTGCA
74056369 AATACGGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 1 0.03
24 27 0.79
25 6 0.18
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (23 bp):
GCACTATGTGTGCAGTGTAATTA
Found at i:74064303 original size:24 final size:24
Alignment explanation
Indices: 74064271--74064331 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
74064261 AAAATCCAAT
* * *
74064271 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
74064295 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
74064319 GCACTATGTGTGC
1 GCACTATGTGTGC
74064332 AAATACGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:74075587 original size:27 final size:26
Alignment explanation
Indices: 74075424--74075586 Score: 186
Period size: 27 Copynumber: 6.0 Consensus size: 26
74075414 AATAATGATC
*
74075424 GAAATACCCCTATAAGGTAAAATGACC
1 GAAATACCCC-ATAAGGTAAAATGACT
74075451 GAAATACCCCCATAAGGTAAAATGACT
1 GAAATA-CCCCATAAGGTAAAATGACT
74075478 GAAATACCCCCAT-AGAGTAAAATGACT
1 GAAATA-CCCCATAAG-GTAAAATGACT
* * *
74075505 GAAGTACACCCATAGGGTAAAATGACC
1 GAAATAC-CCCATAAGGTAAAATGACT
74075532 GAAATACACCCAT-AGGATAAAATGACT
1 GAAATAC-CCCATAAGG-TAAAATGACT
* *
74075559 GTAATACCCCTGTAAGGTAAAATGACT
1 GAAATACCCC-ATAAGGTAAAATGACT
74075586 G
1 G
74075587 TTTTACCCTT
Statistics
Matches: 120, Mismatches: 9, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.07
27 104 0.87
28 8 0.07
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (26 bp):
GAAATACCCCATAAGGTAAAATGACT
Found at i:74075606 original size:27 final size:27
Alignment explanation
Indices: 74075574--74075785 Score: 158
Period size: 27 Copynumber: 7.8 Consensus size: 27
74075564 ACCCCTGTAA
*
74075574 GGTAAAATGACTGTTTTACCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * * *
74075601 GTTAAAATAAC-GATTTTGCCCATATGC
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * ** * **
74075628 GATTAAATGACAATTTTTCCCCCATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
74075655 GGCAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
74075682 GTTAAAATGACAGTTTTTCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** * * *
74075709 GAAAAAATGA-TGATTTGGCCCATATGA
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* *
74075736 GGTAAAATGAGTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
**
74075763 GGTAGGATGACTGTTTTGTCCCT
1 GGTAAAATGACTGTTTTG-CCCT
74075786 ACGTGATGTA
Statistics
Matches: 138, Mismatches: 42, Indels: 9
0.73 0.22 0.05
Matches are distributed among these distances:
26 2 0.01
27 131 0.95
28 5 0.04
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:74075717 original size:81 final size:81
Alignment explanation
Indices: 74075577--74075763 Score: 205
Period size: 81 Copynumber: 2.3 Consensus size: 81
74075567 CCTGTAAGGT
* **
74075577 AAAATGACTGTTTTACCCTTATGTGTTAAAATAACGATTTTGCCCATATGCGATTAAATGACAAT
1 AAAATGACTGTTTTGCCCTTATGTGTTAAAATAACGATTTTGCCCATATGCGAAAAAATGACAAT
** * *
74075642 TTTTCCCCCATGTGGC
66 TTGGCCCACATGAGGC
* * * * **
74075658 AAAATGACTGTTTTGCCCTTATGTGTTAAAATGAC-AGTTTTTCCCTTATGTGAAAAAATGATGA
1 AAAATGACTGTTTTGCCCTTATGTGTTAAAATAACGA-TTTTGCCCATATGCGAAAAAATGACAA
* *
74075722 TTTGGCCCATATGAGGT
65 TTTGGCCCACATGAGGC
* *
74075739 AAAATGAGTATTTTGCCCTTATGTG
1 AAAATGACTGTTTTGCCCTTATGTG
74075764 GTAGGATGAC
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 87 0.99
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (81 bp):
AAAATGACTGTTTTGCCCTTATGTGTTAAAATAACGATTTTGCCCATATGCGAAAAAATGACAAT
TTGGCCCACATGAGGC
Found at i:74076675 original size:16 final size:16
Alignment explanation
Indices: 74076650--74076680 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74076640 TGTAACGCCT
74076650 CAAAAATCTCGAAATC
1 CAAAAATCTCGAAATC
*
74076666 CAAAATTCTCGAAAT
1 CAAAAATCTCGAAAT
74076681 TTTATTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (16 bp):
CAAAAATCTCGAAATC
Found at i:74078010 original size:29 final size:29
Alignment explanation
Indices: 74077965--74078083 Score: 145
Period size: 29 Copynumber: 4.2 Consensus size: 29
74077955 GTGAGCATGA
74077965 ATAT-AATAT-AATTTGGGCCTAATGGGCC
1 ATATGAATATGAA-TTGGGCCTAATGGGCC
* *
74077993 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * *
74078022 ATAAGAATATGAACTGGGCCAAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
74078051 ATTTGAATAAG-ATTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
74078079 ATATG
1 ATATG
74078084 CATGAATGTA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
28 23 0.30
29 51 0.67
30 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:74082204 original size:47 final size:48
Alignment explanation
Indices: 74082151--74082449 Score: 421
Period size: 47 Copynumber: 6.3 Consensus size: 48
74082141 TGTACATGTA
* * *
74082151 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAA-AGTA
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
74082198 TATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
1 TATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
* *
74082247 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
* * *
74082294 TGTATGTGTGATAAGGCCGAATGGCCAATATGATGAATGTGAACA-TG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
* *
74082341 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
* *
74082388 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
*
74082435 TATAAATGTGATAAG
1 TATATATGTGATAAG
74082450 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 190 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (48 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAGTG
Found at i:74086225 original size:42 final size:42
Alignment explanation
Indices: 74086168--74086253 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
74086158 ATTTTCTCGA
* *
74086168 AGATTAATTTGCGTTCGAGATAT-ATCCAATTGAGGGTAAAGG
1 AGATTAATTTACGTTCGAGATATCA-CCAATTGAGAGTAAAGG
* * *
74086210 AGATTGATTTACGTTCGGGATATCACCAATTGAGAGTGAAGG
1 AGATTAATTTACGTTCGAGATATCACCAATTGAGAGTAAAGG
74086252 AG
1 AG
74086254 GCGGATGTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
42 37 0.97
43 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (42 bp):
AGATTAATTTACGTTCGAGATATCACCAATTGAGAGTAAAGG
Found at i:74088763 original size:16 final size:16
Alignment explanation
Indices: 74088742--74088773 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74088732 TTGTAACGCC
74088742 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
74088758 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
74088774 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:74091057 original size:40 final size:40
Alignment explanation
Indices: 74090983--74091154 Score: 176
Period size: 40 Copynumber: 4.3 Consensus size: 40
74090973 GATAACTGAA
* * *
74090983 CTAAGATCCGAAGGCATTCGTG-TGAGTTG-CTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCT-AG-TGATTATATCCGGG
* * *
74091023 CTATGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGG
* * *
74091063 CTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGG
74091103 CTAAGACCCGAAGGCATTTGTG-TGAGTTG-TTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCT-AG-TGATTATATCCGGG
74091142 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
74091155 ATACTTGGGT
Statistics
Matches: 112, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 94 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGG
Found at i:74091116 original size:80 final size:79
Alignment explanation
Indices: 74090983--74091154 Score: 224
Period size: 80 Copynumber: 2.2 Consensus size: 79
74090973 GATAACTGAA
* * * * *
74090983 CTAAGATCCGAAGGCATTCGTGTGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCT-
1 CTAAGACCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTATG-TG
74091047 AG-TGATTATATCCGGG
65 AGTTG-TTATATCC-GG
* *
74091063 CTAAGACCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTGTGA
1 CTAAGACCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTATGTGA
74091128 GTTGTTATATCCGG
66 GTTGTTATATCCGG
74091142 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
74091155 ATACTTGGGT
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 65 0.79
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (79 bp):
CTAAGACCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTATGTGA
GTTGTTATATCCGG
Found at i:74091422 original size:22 final size:22
Alignment explanation
Indices: 74091382--74091423 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
74091372 GAATGTGCAT
*
74091382 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
74091404 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
74091424 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:74093179 original size:17 final size:15
Alignment explanation
Indices: 74093153--74093202 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
74093143 CACGCACAAT
74093153 AAATCAGAAAAAGCTG
1 AAATCAG-AAAAGCTG
74093169 AAATACAGAAAAGCTG
1 AAAT-CAGAAAAGCTG
* * *
74093185 AAAGCCGAACAGCTG
1 AAATCAGAAAAGCTG
74093200 AAA
1 AAA
74093203 GTTGGGCTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 12 0.40
16 15 0.50
17 3 0.10
ACGTcount: A:0.54, C:0.16, G:0.20, T:0.10
Consensus pattern (15 bp):
AAATCAGAAAAGCTG
Found at i:74093459 original size:29 final size:29
Alignment explanation
Indices: 74093427--74093529 Score: 104
Period size: 29 Copynumber: 3.6 Consensus size: 29
74093417 AATATGATTT
74093427 GGCCTAATGGGCCATATGAATGTGAATTG
1 GGCCTAATGGGCCATATGAATGTGAATTG
* * *
74093456 GGCCTAGTGGGCCATAAGAATATGAATTG
1 GGCCTAATGGGCCATATGAATGTGAATTG
* * *
74093485 GGTC-AGATGGGCCATTTG-A-GTAATATTG
1 GGCCTA-ATGGGCCATATGAATGTGA-ATTG
*
74093513 GGCCTAGTGGGCCATAT
1 GGCCTAATGGGCCATAT
74093530 TTATGTTTGT
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
27 2 0.03
28 18 0.31
29 39 0.66
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATGAATGTGAATTG
Found at i:74093479 original size:57 final size:57
Alignment explanation
Indices: 74093417--74093528 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 57
74093407 GCATGAATAT
* *
74093417 AATATGATTTGGC-CTA-ATGGGCCATATGAATGTGA-ATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGCTC-AGATGGGCCATATG-A-GTAATATTGGGCCTAGTGGGCCATAAG
* *
74093474 AATATGAATTGGGTCAGATGGGCCATTTGAGTAATATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGCTCAGATGGGCCATATGAGTAATATTGGGCCTAGTGGGCCATA
74093529 TTTATGTTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
56 3 0.06
57 33 0.69
58 12 0.25
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (57 bp):
AATATGAATTGGCTCAGATGGGCCATATGAGTAATATTGGGCCTAGTGGGCCATAAG
Found at i:74097088 original size:27 final size:27
Alignment explanation
Indices: 74097052--74097245 Score: 185
Period size: 27 Copynumber: 7.2 Consensus size: 27
74097042 GAGATGAAAT
74097052 AATGACCGAAATACCCCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGATAA
* *
74097079 AATGATCGAAATA-CCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAA
*
74097105 AATGACCAAAATACCCCCATAGGATAA
1 AATGACCGAAATACCCCCATAGGATAA
* * *
74097132 AATGACCAAAATATCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAA
* * ** *
74097159 AATGATCGAAATTCCCTTATAGAATAA
1 AATGACCGAAATACCCCCATAGGATAA
* ** * *
74097186 AATAACCCTAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAA
* * **
74097213 AATGACTGTAATACCCTTATAAGG-TAA
1 AATGACCGAAATACCCCCAT-AGGATAA
74097240 AATGAC
1 AATGAC
74097246 TGTTTTGCCT
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 23 0.17
27 112 0.81
28 3 0.02
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.21
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGATAA
Found at i:74097186 original size:54 final size:53
Alignment explanation
Indices: 74097052--74097245 Score: 219
Period size: 54 Copynumber: 3.6 Consensus size: 53
74097042 GAGATGAAAT
* *
74097052 AATGACCGAAATACCCCCATAGGATAAAATGATCGAAATACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAAAATGACCAAAATACCCCATAGGGTAA
*
74097105 AATGACCAAAATACCCCCATAGGATAAAATGACCAAAATATCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAAAATGACCAAAATA-CCCCATAGGGTAA
* * ** * * **
74097159 AATGATCGAAATTCCCTTATAGAATAAAATAACCCTAATACCCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAGGATAAAATGACCAAAATACCCC-ATAGGGTAA
* * **
74097213 AATGACTGTAATACCCTTATAAGG-TAAAATGAC
1 AATGACCGAAATACCCCCAT-AGGATAAAATGAC
74097246 TGTTTTGCCT
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 41 0.34
54 77 0.64
55 2 0.02
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.21
Consensus pattern (53 bp):
AATGACCGAAATACCCCCATAGGATAAAATGACCAAAATACCCCATAGGGTAA
Found at i:74097284 original size:54 final size:54
Alignment explanation
Indices: 74097237--74097477 Score: 261
Period size: 54 Copynumber: 4.5 Consensus size: 54
74097227 CCTTATAAGG
* * *
74097237 TAAAATGACTGTTTTGCCTTTATGTGTTAAAATGACGATTTTGCCCTTATGTGA
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
* * * * *
74097291 TAAAATAACGGTTTTGCCCTTACGTGTTAAAACGACGATTTTCCCCTTATGTGA
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
* * * * * *
74097345 TAAAATCATGGTTTT-CCTTTATGTGGAAAAATGACTGATTTT-CTCTTATGTGT
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGAC-GATTTTGCCCTTATGTGA
* * *
74097398 TAAAATGACGGTTTTGCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
** ** *
74097452 TAGGATGATTGTTTTGCCCCTATGTG
1 TAAAATGACGGTTTTGCCCTTATGTG
74097478 ATGTATGTTT
Statistics
Matches: 155, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
53 42 0.27
54 113 0.73
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (54 bp):
TAAAATGACGGTTTTGCCCTTATGTGGTAAAATGACGATTTTGCCCTTATGTGA
Found at i:74097466 original size:107 final size:108
Alignment explanation
Indices: 74097237--74097469 Score: 290
Period size: 107 Copynumber: 2.2 Consensus size: 108
74097227 CCTTATAAGG
* **
74097237 TAAAATGACTGTTTTGCCTTTATGTGTTAAAATGACGATTTTGCCCTTATGTGATAAAATAACGG
1 TAAAATGATTGTTTTGCCTTTATGTGGAAAAATGACGATTTTGCCCTTATGTGATAAAATAACGG
* *
74097302 TTTTGCCCTTACGTGTTAAAACGACGATTTTCCCCTTATGTGA
66 TTTTGCCCTTACGAGGTAAAACGACGATTTTCCCCTTATGTGA
* * * * *
74097345 TAAAATCATGGTTTT-CCTTTATGTGGAAAAATGACTGATTTT-CTCTTATGTGTTAAAATGACG
1 TAAAATGATTGTTTTGCCTTTATGTGGAAAAATGAC-GATTTTGCCCTTATGTGATAAAATAACG
* * * * *
74097408 GTTTTGCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGTGG
65 GTTTTGCCCTTACGAGGTAAAACGACGATTTTCCCCTTATGTGA
**
74097452 TAGGATGATTGTTTTGCC
1 TAAAATGATTGTTTTGCC
74097470 CCTATGTGAT
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
107 84 0.81
108 20 0.19
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (108 bp):
TAAAATGATTGTTTTGCCTTTATGTGGAAAAATGACGATTTTGCCCTTATGTGATAAAATAACGG
TTTTGCCCTTACGAGGTAAAACGACGATTTTCCCCTTATGTGA
Found at i:74097475 original size:27 final size:27
Alignment explanation
Indices: 74097208--74097477 Score: 226
Period size: 27 Copynumber: 10.0 Consensus size: 27
74097198 ACCCCTATAG
** * **
74097208 GGTAAAATGACTGTAATACCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
74097235 GGTAAAATGACTGTTTTGCCTTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
74097262 GTTAAAATGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * * *
74097289 GATAAAATAACGGTTTTGCCCTTACGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * *
74097316 GTTAAAACGAC-GATTTTCCCCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * *
74097343 GATAAAATCA-TGGTTTT-CCTTTATGT
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* *
74097369 GGAAAAATGACTGATTTT-CTCTTATGT
1 GGTAAAATGACTG-TTTTGCCCTTATGT
* * *
74097396 GTTAAAATGACGGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
74097423 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
** * *
74097450 GGTAGGATGATTGTTTTGCCCCTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
74097477 G
1 G
74097478 ATGTATGTTT
Statistics
Matches: 196, Mismatches: 39, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 22 0.11
27 172 0.88
28 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:74097833 original size:18 final size:18
Alignment explanation
Indices: 74097807--74097855 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
74097797 GTATACAGCA
*
74097807 TACTCTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
*
74097825 TACTGTTACTGCACTGTT
1 TACTGTTACTGCACTGAT
74097843 TACTGTTACTGCA
1 TACTGTTACTGCA
74097856 ATTGGCCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.41
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:74105365 original size:18 final size:19
Alignment explanation
Indices: 74105337--74105372 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
74105327 ATACCAATAC
74105337 CATATTAACATCTATCATA
1 CATATTAACATCTATCATA
*
74105356 CATA-TAACATTTATCAT
1 CATATTAACATCTATCAT
74105373 GCCATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (19 bp):
CATATTAACATCTATCATA
Found at i:74105378 original size:19 final size:19
Alignment explanation
Indices: 74105336--74105378 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
74105326 CATACCAATA
74105336 CCATATTAACATCTATCAT
1 CCATATTAACATCTATCAT
* *
74105355 ACATA-TAACATTTATCAT
1 CCATATTAACATCTATCAT
74105373 GCCATA
1 -CCATA
74105379 AATCATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (19 bp):
CCATATTAACATCTATCAT
Found at i:74106655 original size:42 final size:41
Alignment explanation
Indices: 74106534--74106655 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 41
74106524 TATCATACCA
* *
74106534 ATGCCATATCCCAGATATGGTCTTACATGTAATGTCGTATTG
1 ATGCCATATCCCAGATATGGTCTT-CATGTAATCTCATATTG
* * * *
74106576 AAGCCAATAACCCAGCTATGGTCTT-ACGCTAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTCATG-TAA-TCTCATATTG
**
74106619 ATGCCATATCTTAGATATGGTCTTGCATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTT-CATGTAATCTCA
74106656 GTAACCCTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
41 2 0.03
42 27 0.43
43 32 0.51
44 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTCATGTAATCTCATATTG
Found at i:74109854 original size:16 final size:16
Alignment explanation
Indices: 74109835--74109885 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
74109825 GTAGATCGGC
*
74109835 AAATCCCGAAAAGCCA
1 AAATGCCGAAAAGCCA
* **
74109851 AAATGCTGAAAAGCTG
1 AAATGCCGAAAAGCCA
*
74109867 AAATGCCGGAAAGCCA
1 AAATGCCGAAAAGCCA
74109883 AAA
1 AAA
74109886 GTTTGGCTAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.49, C:0.22, G:0.20, T:0.10
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Done.