Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 227 of 290
Found at i:74110178 original size:28 final size:28
Alignment explanation
Indices: 74110107--74110183 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
74110097 CTGTAAAAGT
*
74110107 GATTGGGCCTAGT-GGTCCATATAGATGT
1 GATTGGGCCTAGTGGGT-CATATAGATGA
*
74110135 GATTTGGGCC-AATGGGTCATAT-GAATGA
1 GA-TTGGGCCTAGTGGGTCATATAG-ATGA
*
74110163 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGTCATA
74110184 AGCATGTATG
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 8 0.20
28 23 0.56
29 10 0.24
ACGTcount: A:0.23, C:0.14, G:0.34, T:0.29
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGTCATATAGATGA
Found at i:74114213 original size:28 final size:30
Alignment explanation
Indices: 74114139--74114216 Score: 90
Period size: 28 Copynumber: 2.7 Consensus size: 30
74114129 CTGTAAAAGT
* *
74114139 GATTGGGTCTAGTGGGCCATATAGAGGTGA
1 GATTGGGCCTAGTGGGCCATATAGAGATGA
* * *
74114169 -TTTGGGCCTAATTGGCCATAT-GA-ATGA
1 GATTGGGCCTAGTGGGCCATATAGAGATGA
74114196 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGCCATA
74114217 AGCATGTATG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
27 3 0.08
28 19 0.49
29 17 0.44
ACGTcount: A:0.23, C:0.14, G:0.35, T:0.28
Consensus pattern (30 bp):
GATTGGGCCTAGTGGGCCATATAGAGATGA
Found at i:74115129 original size:2 final size:2
Alignment explanation
Indices: 74115122--74115332 Score: 189
Period size: 2 Copynumber: 105.0 Consensus size: 2
74115112 GCCAACTAGC
* * *
74115122 AT AT AT AT AT AT GAT AT AG AT A- AT AT AT AT AT AG AT CT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
74115164 AT CT AT AT AT AT AT -T AT CT AT AT AT AT AT GAT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT
* * * *
74115207 AT CT AT AT AT AT AT CT AT CAT AT AT AT AT AT CT -T AT CT AT AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT
* * *
74115249 CT AT AT AT AT AT CAT AT AT AT AT AG AT A- AT AT AT AT AT AG AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
74115291 AT AT AG AT CT CT AT AT AT AT AT -T AT CT AT AT CAT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
74115333 CTTTATGTAA
Statistics
Matches: 169, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
1 5 0.03
2 152 0.90
3 12 0.07
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:74115189 original size:17 final size:17
Alignment explanation
Indices: 74115167--74115334 Score: 127
Period size: 17 Copynumber: 9.9 Consensus size: 17
74115157 TCTATATATC
74115167 TATATATATATTATC--
1 TATATATATATTATCTA
*
74115182 TATATATATATGA--TA
1 TATATATATATTATCTA
*
74115197 TATAT-CATA-TATCTA
1 TATATATATATTATCTA
*
74115212 TATATATAT-CTATCATA
1 TATATATATATTATC-TA
*
74115229 TATATATATCTTATCTA
1 TATATATATATTATCTA
*
74115246 TATCTATATATATATCATA
1 TATATATATAT-TATC-TA
* *
74115265 TATATATAGATAATATATA
1 TATATAT--ATATTATCTA
* * *
74115284 TATAGATATATAGATCTC
1 TATATATATAT-TATCTA
74115302 TATATATATATTATCTA
1 TATATATATATTATCTA
74115319 TATCATATATA-TATCT
1 TAT-ATATATATTATCT
74115335 TTATGTAATT
Statistics
Matches: 121, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
13 1 0.01
14 3 0.02
15 24 0.20
16 6 0.05
17 37 0.31
18 28 0.23
19 16 0.13
20 3 0.02
21 3 0.02
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (17 bp):
TATATATATATTATCTA
Found at i:74117375 original size:19 final size:21
Alignment explanation
Indices: 74117353--74117395 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
74117343 TTCCAAATAT
74117353 ATATACA-TA-AAACAAAACA
1 ATATACAGTAGAAACAAAACA
* *
74117372 ATATCCAGTAGAAACAAAAGA
1 ATATACAGTAGAAACAAAACA
74117393 ATA
1 ATA
74117396 GCCTCACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 12 0.60
ACGTcount: A:0.63, C:0.14, G:0.07, T:0.16
Consensus pattern (21 bp):
ATATACAGTAGAAACAAAACA
Found at i:74119211 original size:20 final size:20
Alignment explanation
Indices: 74119186--74119239 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
74119176 TTTAAGGGCC
74119186 ACACGCCCGTGTGGCATGGG
1 ACACGCCCGTGTGGCATGGG
*
74119206 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCATGGG
*
74119226 ACACACCCGTGTGG
1 ACACGCCCGTGTGG
74119240 GTAGGCCGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.31, G:0.37, T:0.17
Consensus pattern (20 bp):
ACACGCCCGTGTGGCATGGG
Found at i:74119689 original size:18 final size:19
Alignment explanation
Indices: 74119661--74119696 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
74119651 ATACCAATAC
74119661 CATATTAACATCTATCATA
1 CATATTAACATCTATCATA
*
74119680 CATA-TAACATTTATCAT
1 CATATTAACATCTATCAT
74119697 GCCATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (19 bp):
CATATTAACATCTATCATA
Found at i:74119702 original size:19 final size:19
Alignment explanation
Indices: 74119660--74119702 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
74119650 CATACCAATA
74119660 CCATATTAACATCTATCAT
1 CCATATTAACATCTATCAT
* *
74119679 ACATA-TAACATTTATCAT
1 CCATATTAACATCTATCAT
74119697 GCCATA
1 -CCATA
74119703 AATCATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (19 bp):
CCATATTAACATCTATCAT
Found at i:74123475 original size:49 final size:49
Alignment explanation
Indices: 74123420--74123546 Score: 209
Period size: 49 Copynumber: 2.6 Consensus size: 49
74123410 AACCAACCAA
* *
74123420 GAACACACATAGGCACCAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
1 GAACACACCTAGACACCAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
* *
74123469 GAACACACCTAGACACTAAGTGCTTAGCCAGTAAGCTAACATCCCTCCG
1 GAACACACCTAGACACCAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
*
74123518 GAACACACCTAGACACCAAGTGCCAAGCC
1 GAACACACCTAGACACCAAGTGCCTAGCC
74123547 CGAAGACTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.34, C:0.35, G:0.17, T:0.14
Consensus pattern (49 bp):
GAACACACCTAGACACCAAGTGCCTAGCCAGTAAGCTAACATCCCTCCG
Found at i:74131225 original size:42 final size:41
Alignment explanation
Indices: 74131160--74131271 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 41
74131150 AGGAAACTCG
* * *
74131160 CACACTCAGTGCCAAATAAATAGCCGAAGTTGTATCAATCTCA
1 CACACTAAGTG-CAAAT-AATAGCCGAAGCTATATCAATCTCA
* * * *
74131203 CACACTGAGTGCAAATATATAGCTGAAGCTATCTCGATCTCA
1 CACACTAAGTGCAAATA-ATAGCCGAAGCTATATCAATCTCA
*
74131245 CACACTAAGTGCACATAATTAGCCGAA
1 CACACTAAGTGCAAATAA-TAGCCGAA
74131272 TCATCGTCGA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 46 0.79
43 10 0.17
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (41 bp):
CACACTAAGTGCAAATAATAGCCGAAGCTATATCAATCTCA
Found at i:74146260 original size:24 final size:23
Alignment explanation
Indices: 74146228--74146279 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
74146218 TGAATCGACG
* *
74146228 AAAGCCGAAATACGGAAAAGTCGA
1 AAAGTCGAAATACCGAAAAGTC-A
*
74146252 AAAGTCGAAATGCCGAAAAGTCA
1 AAAGTCGAAATACCGAAAAGTCA
74146275 AAAGT
1 AAAGT
74146280 TGGGCTACAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.50, C:0.15, G:0.23, T:0.12
Consensus pattern (23 bp):
AAAGTCGAAATACCGAAAAGTCA
Found at i:74146279 original size:7 final size:8
Alignment explanation
Indices: 74146242--74146279 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
74146232 CCGAAATACG
74146242 GAAAAGTC
1 GAAAAGTC
74146250 GAAAAGTC
1 GAAAAGTC
* *
74146258 GAAATGCC
1 GAAAAGTC
74146266 GAAAAGTC
1 GAAAAGTC
74146274 -AAAAGT
1 GAAAAGT
74146280 TGGGCTACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.50, C:0.13, G:0.24, T:0.13
Consensus pattern (8 bp):
GAAAAGTC
Found at i:74146520 original size:28 final size:29
Alignment explanation
Indices: 74146489--74146606 Score: 127
Period size: 28 Copynumber: 4.2 Consensus size: 29
74146479 GTGAGCATGA
*
74146489 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* * * *
74146517 ATATGAATGTGAATTGGGACTAGTGGTCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
*
74146546 ATA-GAATATGAACTGGGCC-ATATGGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* *
74146574 ATTTGAATAAG-ATTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
74146602 ATATG
1 ATATG
74146607 CATGTATGTA
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
27 1 0.01
28 42 0.58
29 29 0.40
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:74147527 original size:15 final size:15
Alignment explanation
Indices: 74147507--74147537 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
74147497 ATTTATTACA
74147507 AATTTACTCTTTCAC
1 AATTTACTCTTTCAC
74147522 AATTTACTCTTTCAC
1 AATTTACTCTTTCAC
74147537 A
1 A
74147538 CATCTTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTACTCTTTCAC
Found at i:74148125 original size:26 final size:26
Alignment explanation
Indices: 74148096--74148155 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
74148086 TCCCTTTGAA
* * *
74148096 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
74148122 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
74148150 CCATTC
1 TCATTC
74148156 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:74148748 original size:34 final size:34
Alignment explanation
Indices: 74148705--74148773 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
74148695 TGAAATTGAG
74148705 TAAAATTCTACTATAGAAGAATATCACTAGTGTC
1 TAAAATTCTACTATAGAAGAATATCACTAGTGTC
74148739 TAAAATTCTACTATAGAAGAATATCACTAGTGTC
1 TAAAATTCTACTATAGAAGAATATCACTAGTGTC
74148773 T
1 T
74148774 CTAGCAGCCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (34 bp):
TAAAATTCTACTATAGAAGAATATCACTAGTGTC
Found at i:74152622 original size:30 final size:31
Alignment explanation
Indices: 74152598--74152655 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
74152588 AGCTCCTATC
*
74152598 AGCTCACTTGAGTTTATTTT-AGCTCATACG
1 AGCTCAATTGAGTTTATTTTCAGCTCATACG
* *
74152628 AGCTCAATTTAGTTTCTTTTCAGCTCAT
1 AGCTCAATTGAGTTTATTTTCAGCTCAT
74152656 TTCTTTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (31 bp):
AGCTCAATTGAGTTTATTTTCAGCTCATACG
Found at i:74159514 original size:52 final size:50
Alignment explanation
Indices: 74159418--74159538 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 50
74159408 ATTGTAAGAA
** ** **
74159418 CACATGTGTAGTACTATTTGCAAGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAAGCTACTACATGTACAAAATGG--TTAGGT
** * *
74159470 CATGTGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAAGCTACTACATGTACAAAATGGTTAGGT
*
74159520 CGCATGTGTAGTACTAAGT
1 CACATGTGTAGTACTAAGT
74159539 ACAGGCTATT
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
50 22 0.39
52 34 0.61
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAAGCTACTACATGTACAAAATGGTTAGGT
Found at i:74162067 original size:31 final size:29
Alignment explanation
Indices: 74162015--74162074 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
74162005 TAAAAGCTAC
74162015 ATGAATGCATGAAACATATAAAAATCAAAA
1 ATGAATGCATGAAACATATAAAAAT-AAAA
74162045 ATGAATGATCATGAAA-ATATAAAAATAAAA
1 ATGAATG--CATGAAACATATAAAAATAAAA
74162075 GCTTGGAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 11 0.39
31 10 0.36
32 7 0.25
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.22
Consensus pattern (29 bp):
ATGAATGCATGAAACATATAAAAATAAAA
Found at i:74167492 original size:24 final size:24
Alignment explanation
Indices: 74167460--74167509 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
74167450 ACAAGGCTTC
74167460 ATCCAACCTCACTGATC-AATCCTT
1 ATCCAACCTCACTGA-CAAATCCTT
74167484 ATCCAACCTCACTGACAAATCCTT
1 ATCCAACCTCACTGACAAATCCTT
74167508 AT
1 AT
74167510 AGTTGGGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.28
Consensus pattern (24 bp):
ATCCAACCTCACTGACAAATCCTT
Found at i:74171816 original size:20 final size:17
Alignment explanation
Indices: 74171777--74171811 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
74171767 GTAAGTCATG
74171777 TTTGACTCGGTTTTTAA
1 TTTGACTCGGTTTTTAA
74171794 TTTGACTCGGTTTTTAA
1 TTTGACTCGGTTTTTAA
74171811 T
1 T
74171812 AATTTCTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTGACTCGGTTTTTAA
Found at i:74174086 original size:16 final size:16
Alignment explanation
Indices: 74174065--74174096 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74174055 ATTGTAACGC
74174065 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
74174081 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
74174097 TCATGAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.38, G:0.06, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:74174825 original size:63 final size:63
Alignment explanation
Indices: 74174753--74174880 Score: 220
Period size: 63 Copynumber: 2.0 Consensus size: 63
74174743 TGATCCATTG
*
74174753 TTAGTTAGCCGACTTATTCTTGATTCCCTTGGTGCCAGATAAACCTTGTTCATCATACTAAGT
1 TTAGTTAGCCGACTTATTCTTGATTCCATTGGTGCCAGATAAACCTTGTTCATCATACTAAGT
* * *
74174816 TTAGTTAGCCGATTTCTTCTTGATTTCATTGGTGCCAGATAAACCTTGTTCATCATACTAAGT
1 TTAGTTAGCCGACTTATTCTTGATTCCATTGGTGCCAGATAAACCTTGTTCATCATACTAAGT
74174879 TT
1 TT
74174881 GGAAACCGAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (63 bp):
TTAGTTAGCCGACTTATTCTTGATTCCATTGGTGCCAGATAAACCTTGTTCATCATACTAAGT
Found at i:74192035 original size:49 final size:49
Alignment explanation
Indices: 74191942--74192040 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 49
74191932 TAGAGGTAGG
*
74191942 TATTGAGATAGCTTCAGCTACATATATATTGGCACTTCGGGTGCAAGAT
1 TATTGAGATAGCTTCAGCTACATATATATTGGCACTTAGGGTGCAAGAT
* * * * **
74191991 TATTGAGATAGCTTCGGCTATATTTTTATTGGCACTTATTGTGCAAGAT
1 TATTGAGATAGCTTCAGCTACATATATATTGGCACTTAGGGTGCAAGAT
74192040 T
1 T
74192041 CCCAGGTGTC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (49 bp):
TATTGAGATAGCTTCAGCTACATATATATTGGCACTTAGGGTGCAAGAT
Found at i:74197342 original size:6 final size:6
Alignment explanation
Indices: 74197333--74197368 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
74197323 GTTAAGGTGA
* *
74197333 GGTTTC GGTTTT GGTTTC GGTTTT GGTTTT GGTTTT
1 GGTTTT GGTTTT GGTTTT GGTTTT GGTTTT GGTTTT
74197369 TGGGTAGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.06, G:0.33, T:0.61
Consensus pattern (6 bp):
GGTTTT
Found at i:74197350 original size:12 final size:12
Alignment explanation
Indices: 74197333--74197368 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
74197323 GTTAAGGTGA
74197333 GGTTTCGGTTTT
1 GGTTTCGGTTTT
74197345 GGTTTCGGTTTT
1 GGTTTCGGTTTT
*
74197357 GGTTTTGGTTTT
1 GGTTTCGGTTTT
74197369 TGGGTAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.06, G:0.33, T:0.61
Consensus pattern (12 bp):
GGTTTCGGTTTT
Found at i:74197360 original size:18 final size:18
Alignment explanation
Indices: 74197333--74197367 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74197323 GTTAAGGTGA
74197333 GGTTTCGGTTTTGGTTTC
1 GGTTTCGGTTTTGGTTTC
*
74197351 GGTTTTGGTTTTGGTTT
1 GGTTTCGGTTTTGGTTT
74197368 TTGGGTAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.06, G:0.34, T:0.60
Consensus pattern (18 bp):
GGTTTCGGTTTTGGTTTC
Found at i:74197547 original size:24 final size:24
Alignment explanation
Indices: 74197497--74197547 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
74197487 ATGAATCGGT
* * *
74197497 AAAAGTCAAAATGCCGAAATGTTG
1 AAAAGTCAAAATACCGAAAAGTCG
74197521 AAAAG-CAAAAGTACCGAAAAGTCG
1 AAAAGTCAAAA-TACCGAAAAGTCG
74197545 AAA
1 AAA
74197548 TGCCAAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.53, C:0.14, G:0.20, T:0.14
Consensus pattern (24 bp):
AAAAGTCAAAATACCGAAAAGTCG
Found at i:74197696 original size:19 final size:18
Alignment explanation
Indices: 74197672--74197716 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
74197662 ATTTGGCCAT
74197672 ATGGGCCACAATGGGCTAA
1 ATGGGCC-CAATGGGCTAA
*
74197691 ATGGGCCCGATGGGCT-A
1 ATGGGCCCAATGGGCTAA
*
74197708 TTGGGCCCA
1 ATGGGCCCA
74197717 TAATAGGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 8 0.35
18 8 0.35
19 7 0.30
ACGTcount: A:0.22, C:0.24, G:0.36, T:0.18
Consensus pattern (18 bp):
ATGGGCCCAATGGGCTAA
Found at i:74197705 original size:18 final size:19
Alignment explanation
Indices: 74197672--74197707 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
74197662 ATTTGGCCAT
74197672 ATGGGCCACAATGGGCTAA
1 ATGGGCCACAATGGGCTAA
*
74197691 ATGGGCC-CGATGGGCTA
1 ATGGGCCACAATGGGCTA
74197708 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.25, C:0.22, G:0.36, T:0.17
Consensus pattern (19 bp):
ATGGGCCACAATGGGCTAA
Found at i:74197833 original size:29 final size:28
Alignment explanation
Indices: 74197774--74197834 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
74197764 GTGAGCATGA
* *
74197774 ATATGAATGTGACTGGTCCTAATGGGCC
1 ATATAAATGTGACTGGGCCTAATGGGCC
* * *
74197802 ATATAAATGTGATTTGGGCCTAGTGGGTC
1 ATATAAATGTGA-CTGGGCCTAATGGGCC
74197831 ATAT
1 ATAT
74197835 TCAAGTCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
ATATAAATGTGACTGGGCCTAATGGGCC
Found at i:74201796 original size:7 final size:6
Alignment explanation
Indices: 74201764--74201793 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
74201754 GTTAAGGTGA
*
74201764 GGTTTC GGTTTT GGTTTT GGTTTT GGTTTT
1 GGTTTT GGTTTT GGTTTT GGTTTT GGTTTT
74201794 TGGGTAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.03, G:0.33, T:0.63
Consensus pattern (6 bp):
GGTTTT
Found at i:74202259 original size:58 final size:57
Alignment explanation
Indices: 74202187--74202297 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
74202177 TGAATGTGAC
* * * *
74202187 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAGTGGGCCATATTTAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATATAGGTGATT
* * *
74202245 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATATAGGT
74202298 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATATAGGTGATT
Found at i:74202284 original size:28 final size:29
Alignment explanation
Indices: 74202174--74202288 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
74202164 GTGAGCATGA
* *
74202174 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
74202202 ATATAAATGTGATTTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
74202231 ATATTTAGGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
74202260 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
74202288 A
1 A
74202289 GATATAGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 27 0.37
29 46 0.63
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:74202651 original size:27 final size:27
Alignment explanation
Indices: 74202577--74202643 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
74202567 TAATTTAGGG
*
74202577 AAAATTACCGAAACTCCCCTAAGGGAA
1 AAAATTACCAAAACTCCCCTAAGGGAA
74202604 AAAATTACCAAAACTCCCCTAAGGGAA
1 AAAATTACCAAAACTCCCCTAAGGGAA
74202631 AAAATTACCAAAA
1 AAAATTACCAAAA
74202644 TATCCCTAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.51, C:0.24, G:0.10, T:0.15
Consensus pattern (27 bp):
AAAATTACCAAAACTCCCCTAAGGGAA
Found at i:74204379 original size:27 final size:27
Alignment explanation
Indices: 74204331--74204386 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
74204321 AATACTTGAA
*
74204331 ATCATTTCAAGTTTCACATCTCATTTC
1 ATCATTTCAAGTTTCACATCTCATCTC
* **
74204358 ATCATTTCATGTTTCATTTCTCATCTC
1 ATCATTTCAAGTTTCACATCTCATCTC
74204385 AT
1 AT
74204387 ATCCATTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.48
Consensus pattern (27 bp):
ATCATTTCAAGTTTCACATCTCATCTC
Found at i:74205547 original size:13 final size:13
Alignment explanation
Indices: 74205529--74205553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74205519 CTTCTTCTCA
74205529 TTTTCTTTCTTTC
1 TTTTCTTTCTTTC
74205542 TTTTCTTTCTTT
1 TTTTCTTTCTTT
74205554 AATGTTTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTCTTTC
Found at i:74207056 original size:37 final size:37
Alignment explanation
Indices: 74206997--74207142 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
74206987 AGCTCAGACG
* * *
74206997 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
74207034 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74207071 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74207108 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
74207143 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74207411 original size:47 final size:47
Alignment explanation
Indices: 74207349--74207784 Score: 593
Period size: 47 Copynumber: 9.1 Consensus size: 47
74207339 ACACGTTTCG
* * * ***
74207349 CATTAGCCATTCGGCCTTACCACATATATTTATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
74207396 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
74207443 CATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
74207490 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
74207537 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * ** *
74207584 CATTGGCCATTTGGCCTTATCACGCATATATATATACAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
74207637 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
74207684 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
74207735 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
74207782 CAT
1 CAT
74207785 AAAATCCTAA
Statistics
Matches: 351, Mismatches: 28, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
47 264 0.75
49 1 0.00
51 46 0.13
53 40 0.11
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:74207824 original size:194 final size:191
Alignment explanation
Indices: 74207429--74207808 Score: 534
Period size: 194 Copynumber: 2.0 Consensus size: 191
74207419 ATATATGCAT
*
74207429 GTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
*
74207494 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
66 GGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
** * * ** * ** *
74207559 CACATACGTATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACGCATATATATATACAA
131 CACATACACATGTTCACATCCATCACATT-G-AAAAT-GCCTAATCACAAATATAAATATACAA
74207623 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
* *
74207688 GGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTT
66 GGCCATTCGGCCTTATCACACATACACAT----GTTCACATTCATCACATTGGCCATTCGGCCTT
74207753 ATCACACATACACATGTTCACATCCATCACA-T-AAAAT-CCTAAATCA-AAATATAAAT
127 ATCACACATACACATGTTCACATCCATCACATTGAAAATGCCT-AATCACAAATATAAAT
74207809 TTTCATGTAT
Statistics
Matches: 167, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
192 10 0.06
193 4 0.02
194 92 0.55
197 1 0.01
198 60 0.36
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (191 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
GGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CACATACACATGTTCACATCCATCACATTGAAAATGCCTAATCACAAATATAAATATACAA
Found at i:74210119 original size:85 final size:85
Alignment explanation
Indices: 74209976--74210154 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
74209966 TATTTTATTG
* *
74209976 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
74210041 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
74210061 CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATTTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
74210126 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
74210146 CCCATGCTC
1 CCCATGCTC
74210155 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:74215753 original size:28 final size:28
Alignment explanation
Indices: 74215656--74215756 Score: 89
Period size: 27 Copynumber: 3.6 Consensus size: 28
74215646 ATATAGAAAA
* * * *
74215656 TGTGACATAGTCACCAGATACAAATATTT
1 TGTGGCATAGCCACCAGA-ACAGATAATT
* *
74215685 TGTGGCAGT-GCCACCAGAACAGGT-ATA
1 TGTGGCA-TAGCCACCAGAACAGATAATT
* **
74215712 CGTGGCAGGGCCACCAGAACAGATAATT
1 TGTGGCATAGCCACCAGAACAGATAATT
74215740 TGTGGCATAGCCACCAG
1 TGTGGCATAGCCACCAG
74215757 GACACTTCCT
Statistics
Matches: 56, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
27 21 0.38
28 20 0.36
29 14 0.25
30 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.21
Consensus pattern (28 bp):
TGTGGCATAGCCACCAGAACAGATAATT
Found at i:74215909 original size:28 final size:28
Alignment explanation
Indices: 74215862--74215926 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
74215852 AAATTAACCC
*
74215862 TAAGGGTATAAAGGTCATTTTGCATACA
1 TAAGGGTATAAAGGTAATTTTGCATACA
* *
74215890 TAGGGGTATAATGGTAATTTTGCATACA
1 TAAGGGTATAAAGGTAATTTTGCATACA
74215918 TAAGGGTAT
1 TAAGGGTAT
74215927 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.34
Consensus pattern (28 bp):
TAAGGGTATAAAGGTAATTTTGCATACA
Found at i:74218709 original size:27 final size:27
Alignment explanation
Indices: 74218671--74218759 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
74218661 GTGATAGAGT
*
74218671 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTCGTGGCAGTGC
* * *
74218700 CACCAG-ACAGATATACATGGCAGGGC
1 CACCAGAACAGATATTCGTGGCAGTGC
74218726 CACCAGAACAGATAATTCGTGGCA-TAGC
1 CACCAGAACAGAT-ATTCGTGGCAGT-GC
74218754 CACCAG
1 CACCAG
74218760 GACACTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 15 0.30
27 13 0.26
28 16 0.32
29 6 0.12
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATTCGTGGCAGTGC
Found at i:74218912 original size:28 final size:28
Alignment explanation
Indices: 74218869--74218929 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
74218859 TAACCCTAGG
*
74218869 GGTATAAAGGTCATTTTGCATACATAGA
1 GGTATAAAGGTAATTTTGCATACATAGA
* *
74218897 GGTATAATGGTAATTTTGCATACATAGG
1 GGTATAAAGGTAATTTTGCATACATAGA
74218925 GGTAT
1 GGTAT
74218930 TCTAGTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (28 bp):
GGTATAAAGGTAATTTTGCATACATAGA
Found at i:74219192 original size:8 final size:8
Alignment explanation
Indices: 74219176--74219207 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
74219166 CCCAAAATAC
74219176 CGGCTTTT
1 CGGCTTTT
*
74219184 CGGCATTT
1 CGGCTTTT
74219192 CGGCTTTT
1 CGGCTTTT
74219200 CGGCTTTT
1 CGGCTTTT
74219208 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:74224858 original size:16 final size:16
Alignment explanation
Indices: 74224839--74224869 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74224829 CTTCTTCACT
74224839 TACTAACTTACTTAAA
1 TACTAACTTACTTAAA
*
74224855 TACTTACTTACTTAA
1 TACTAACTTACTTAA
74224870 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTAACTTACTTAAA
Found at i:74224875 original size:20 final size:20
Alignment explanation
Indices: 74224836--74224875 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74224826 AAACTTCTTC
* *
74224836 ACTTACTAACTTACTTAAAT
1 ACTTACTAACTTAATCAAAT
*
74224856 ACTTACTTACTTAATCAAAT
1 ACTTACTAACTTAATCAAAT
74224876 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTAACTTAATCAAAT
Found at i:74225251 original size:55 final size:56
Alignment explanation
Indices: 74225106--74225315 Score: 254
Period size: 55 Copynumber: 3.8 Consensus size: 56
74225096 GTATCCTTTT
* *
74225106 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTAT-
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
* * * *
74225160 G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
* * *
74225214 GAAACTTATCAATGCCATGTCTTTACATGGTCTTACATGATATCCTTT-CC-T-TA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
* *
74225267 GAAGCCTTACCAATTGCCATGTCTTGGCATGGTCTTACATGGTATCCTT
1 GAA-ACTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
74225316 AACCCCTAAT
Statistics
Matches: 132, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 48 0.36
54 10 0.08
55 67 0.51
56 5 0.04
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (56 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
Found at i:74225258 original size:108 final size:109
Alignment explanation
Indices: 74225106--74225308 Score: 302
Period size: 108 Copynumber: 1.9 Consensus size: 109
74225096 GTATCCTTTT
* *
74225106 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAACCTCACCA
74225170 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* ** * *
74225214 GAAACTTATCAATGCCATGTCTTTACATGGTCTTACATGATATCCTTTCCTTAGAAGCCTTACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAA-CCTCACCA
*
74225279 ATTGCCATGTCTTGGCATGGTCTTACATGG
65 ATTGCCATGCCTTGGCATGGTCTTACATGG
74225309 TATCCTTAAC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (109 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAACCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:74226842 original size:17 final size:17
Alignment explanation
Indices: 74226820--74226854 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
74226810 ACCGAGGCAA
74226820 GTTCATTTGCAAATTAT
1 GTTCATTTGCAAATTAT
*
74226837 GTTCATTTGGAAATTAT
1 GTTCATTTGCAAATTAT
74226854 G
1 G
74226855 CAACATGTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (17 bp):
GTTCATTTGCAAATTAT
Found at i:74227138 original size:20 final size:20
Alignment explanation
Indices: 74227110--74227147 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74227100 CTAGGAACTA
74227110 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
74227130 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
74227148 TATATGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:74235865 original size:38 final size:38
Alignment explanation
Indices: 74235814--74235916 Score: 145
Period size: 38 Copynumber: 2.7 Consensus size: 38
74235804 TTAAACTCAT
* *
74235814 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
* *
74235852 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGA
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
*
74235890 ATATAATTCCAGCA-TATAGCCTGCGGG
1 ATATAATACCAGCACTA-AGCCTGCGGG
74235917 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 1 0.02
38 56 0.98
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
Found at i:74239580 original size:29 final size:30
Alignment explanation
Indices: 74239537--74239639 Score: 90
Period size: 29 Copynumber: 3.5 Consensus size: 30
74239527 GGTTGAAGAA
*
74239537 CTCGCACACGCAGTGCCTCAATTACCAG-T
1 CTCGCACACACAGTGCCTCAATTACCAGAT
* * ** *
74239566 CTCGCACACATAGTG-ATCGGTTA-AAGGAAT
1 CTCGCACACACAGTGCCTCAATTACCA-G-AT
74239596 -TCGCACACACAGTGCCTCAATTACC-GAT
1 CTCGCACACACAGTGCCTCAATTACCAGAT
*
74239624 CTCGCACACATAGTGC
1 CTCGCACACACAGTGC
74239640 TCGGTTAAAG
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
27 1 0.02
28 8 0.14
29 41 0.73
30 6 0.11
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.21
Consensus pattern (30 bp):
CTCGCACACACAGTGCCTCAATTACCAGAT
Found at i:74239618 original size:58 final size:58
Alignment explanation
Indices: 74239503--74239671 Score: 261
Period size: 58 Copynumber: 2.9 Consensus size: 58
74239493 GTGCCCACTG
* * *
74239503 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACGCAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
74239560 ACC-AGTCTCGCACACATAGTGATCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGA-TCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
74239618 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACATACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
74239672 TAATCATTCG
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
56 1 0.01
57 27 0.26
58 73 0.72
59 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:74239659 original size:29 final size:29
Alignment explanation
Indices: 74239567--74239660 Score: 93
Period size: 29 Copynumber: 3.2 Consensus size: 29
74239557 ATTACCAGTC
*
74239567 TCGCACACATAGTGATCGGTTAAAGGAAT
1 TCGCACACATAGTGCTCGGTTAAAGGAAT
* ** **
74239596 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACATAGTG-CTCGGTTAAAGGAAT
74239624 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACATAGTGCTCGGTTAAAGGAAT
*
74239654 TTGCACA
1 TCGCACA
74239661 TACAGTGCCT
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
28 7 0.14
29 36 0.73
30 6 0.12
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (29 bp):
TCGCACACATAGTGCTCGGTTAAAGGAAT
Found at i:74239886 original size:43 final size:43
Alignment explanation
Indices: 74239837--74239960 Score: 212
Period size: 43 Copynumber: 2.9 Consensus size: 43
74239827 CACCGACATT
* *
74239837 AAGCCTGCTAGGCATGAAGACCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
74239880 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
* *
74239923 AAGCCTACTAGGCACGAAGGCCCGAATGCACATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG
74239961 AGTTTCATGC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 77 1.00
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.10
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:74240029 original size:27 final size:27
Alignment explanation
Indices: 74239999--74240054 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
74239989 ATACATTTCA
74239999 TATAGCATATCATATTTGTAATTCACT
1 TATAGCATATCATATTTGTAATTCACT
74240026 TATAGCATATCATATTTGTAATTCACT
1 TATAGCATATCATATTTGTAATTCACT
74240053 TA
1 TA
74240055 CTTTTTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (27 bp):
TATAGCATATCATATTTGTAATTCACT
Found at i:74241626 original size:38 final size:38
Alignment explanation
Indices: 74241578--74241696 Score: 132
Period size: 38 Copynumber: 3.1 Consensus size: 38
74241568 TTAAACTCAT
*
74241578 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * * *
74241616 ATATAATACCAGCACGAAGCTTCCGGGATTTAACCCGA
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * *
74241654 ATATAATTCTAGCA-TATAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGG
74241694 ATA
1 ATA
74241697 CACATCAAAT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
37 1 0.02
38 53 0.80
39 5 0.08
40 7 0.11
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
Found at i:74244645 original size:42 final size:43
Alignment explanation
Indices: 74244596--74244717 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
74244586 CTAAACTCAT
* *
74244596 TCACCGGCATTACA-CCTGCTAAGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
* * **
74244638 TCACCGGCATTATAGCCTGCCAGGCTCAAAGCCTAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
* *
74244681 TCACCGGTATTATAGCCTACTAGGCTCGAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAA-GCCCGA
74244718 ATAGTACCGT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 13 0.20
43 49 0.74
44 4 0.06
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAAC
Found at i:74251244 original size:47 final size:47
Alignment explanation
Indices: 74251175--74251346 Score: 208
Period size: 47 Copynumber: 3.7 Consensus size: 47
74251165 GGATGGTTGA
74251175 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* *** *
74251222 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-G
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
74251265 CGAATGTCCGAACTTGTTGAGTTGAGTCCGAGTTTGAGAGATGTAACTAG
1 -GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
*
74251315 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
74251347 ACTTATGGAT
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 30 0.30
47 61 0.60
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:74251292 original size:46 final size:46
Alignment explanation
Indices: 74251225--74251400 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
74251215 TAACTAGGCA
74251225 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
74251271 TCCGAACTTGTTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
74251316 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
74251364 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74251401 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
45 1 0.01
46 62 0.57
47 26 0.24
48 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74251318 original size:93 final size:93
Alignment explanation
Indices: 74251178--74251392 Score: 385
Period size: 93 Copynumber: 2.3 Consensus size: 93
74251168 TGGTTGAGCA
74251178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
*
74251243 AGTCCGAGTTCACTTATGGATGCGAATG
66 AGTCCGAGTTCACTTATGGATGCGAACG
* *
74251271 TCCGAACTTGTTGAGTTGAGTCCGAGTTTGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
74251336 AGTCCGAGTTCACTTATGGATGCGAACG
66 AGTCCGAGTTCACTTATGGATGCGAACG
* *
74251364 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
74251393 ACTTATGGGC
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 115 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
AGTCCGAGTTCACTTATGGATGCGAACG
Found at i:74256459 original size:21 final size:18
Alignment explanation
Indices: 74256422--74256469 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 18
74256412 TGAACTTTGG
74256422 TTCAAGTTTTCAATCTCATA
1 TTCAA-TTTTCAATCTCA-A
74256442 TCTCAATTTTCAATTCTCAA
1 T-TCAATTTTCAA-TCTCAA
74256462 TTCAATTT
1 TTCAATTT
74256470 CTCGTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.27
20 10 0.38
21 9 0.35
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48
Consensus pattern (18 bp):
TTCAATTTTCAATCTCAA
Found at i:74257134 original size:15 final size:15
Alignment explanation
Indices: 74257116--74257156 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
74257106 TTAAATAAAT
74257116 ATAAATTCAATCAAA
1 ATAAATTCAATCAAA
* *
74257131 ATAATTTCAATCAAT
1 ATAAATTCAATCAAA
74257146 ATAAATTCAAT
1 ATAAATTCAAT
74257157 AAATTCATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAAATTCAATCAAA
Found at i:74257886 original size:27 final size:24
Alignment explanation
Indices: 74257836--74257886 Score: 57
Period size: 26 Copynumber: 2.0 Consensus size: 24
74257826 CTTCAATTCC
*
74257836 TCCTTTTTTTTCTCTTTCTCTTTT
1 TCCTTTTTTTTCCCTTTCTCTTTT
*
74257860 TCCTTCTTTCTTTCCCTTATCTGTTTT
1 TCCTT-TTT-TTTCCCTT-TCTCTTTT
74257887 CGTTCTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 5 0.23
25 3 0.14
26 7 0.32
27 7 0.32
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (24 bp):
TCCTTTTTTTTCCCTTTCTCTTTT
Found at i:74259791 original size:47 final size:46
Alignment explanation
Indices: 74259674--74259805 Score: 146
Period size: 47 Copynumber: 2.8 Consensus size: 46
74259664 TGGGTTATGT
74259674 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT--AAC
* * *
74259722 GAGGGCTAGAGTAAGA--AGTGTCTGGGACAT-GCATCAGCCACATT-AC
1 GAGAGCCAGTGTAAGACCA-TGTCTGGGACATGGCATC-G--ACATTAAC
*
74259768 GATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
74259806 GCGTAGAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
46 20 0.29
47 26 0.37
48 19 0.27
49 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAC
Found at i:74259823 original size:47 final size:45
Alignment explanation
Indices: 74259678--74259831 Score: 116
Period size: 47 Copynumber: 3.3 Consensus size: 45
74259668 TTATGTGAGA
* * * *
74259678 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAACGAGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAG-AA-TAGT
* * * * * *
74259726 GCTAGAGTAAGA--AGTGTCTGGGACAT-GCATCAGCCACATTACGAT
1 GCCAGTGTAAGACCA-TGTCTGGGACATGGCATCGGCTAGAATA-G-T
74259771 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATAGT
1 -GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGA-ATAGT
74259819 GCCAGTGTAAGAC
1 GCCAGTGTAAGAC
74259832 GTGTCTTTGG
Statistics
Matches: 81, Mismatches: 16, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
46 17 0.21
47 37 0.46
48 19 0.23
49 3 0.04
50 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (45 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAATAGT
Found at i:74261898 original size:11 final size:11
Alignment explanation
Indices: 74261871--74261904 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
74261861 TTCCACAACA
74261871 TTCTCTCA-TT
1 TTCTCTCACTT
*
74261881 CTCTCTCACTT
1 TTCTCTCACTT
74261892 TTCTCTCACTT
1 TTCTCTCACTT
74261903 TT
1 TT
74261905 TCCATCCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.09, C:0.35, G:0.00, T:0.56
Consensus pattern (11 bp):
TTCTCTCACTT
Found at i:74269161 original size:22 final size:24
Alignment explanation
Indices: 74269116--74269163 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
74269106 TAATCTTTAA
74269116 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
74269140 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
74269162 TA
1 TA
74269164 GCATAGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:74269212 original size:118 final size:114
Alignment explanation
Indices: 74268975--74269198 Score: 265
Period size: 118 Copynumber: 1.9 Consensus size: 114
74268965 GTTTTTAGTT
74268975 TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
1 TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
*
74269040 TTTTAGGATTAGTGTTAATTTAATCATATTTTATTTGATAAGTTTTTAATAA
66 TTTTAGAATTAGTGTTAATTTAATCATATTTTATTT-AT-AG-TTTTAATAA
* *
74269092 TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAATCT-TT
1 TAATAA-AAAATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAAT-TATT
*
74269155 ATCAATTTAGCATAGAATTAG-GATTAGTTTTAATCATATTTTAT
61 ATCAATTT----TAGAATTAGTG-TTA-ATTTAATCATATTTTAT
74269199 CTTTGTTTAA
Statistics
Matches: 92, Mismatches: 4, Indels: 14
0.84 0.04 0.13
Matches are distributed among these distances:
117 6 0.07
118 35 0.38
119 1 0.01
120 21 0.23
121 1 0.01
123 1 0.01
124 11 0.12
125 16 0.17
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (114 bp):
TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
TTTTAGAATTAGTGTTAATTTAATCATATTTTATTTATAGTTTTAATAA
Found at i:74269746 original size:3 final size:3
Alignment explanation
Indices: 74269738--74269782 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
74269728 CTTTTCCTTC
74269738 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
74269783 TATTGTAACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:74270812 original size:27 final size:27
Alignment explanation
Indices: 74270782--74270880 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 27
74270772 TTTAGTTTAC
74270782 TAAAATTACCAAAATACGCTTAG-TTTG
1 TAAAATTACCAAAATAC-CTTAGATTTG
* ** * *
74270809 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCTTAGATTTG
** * *
74270836 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCAAAATACCTTAGATTTG
*
74270863 TAAAATTACCAAAGTACC
1 TAAAATTACCAAAATACC
74270881 CCCGATTTAC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.05
27 57 0.95
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCTTAGATTTG
Found at i:74270896 original size:27 final size:27
Alignment explanation
Indices: 74270866--74270927 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
74270856 CGACTTGTAA
74270866 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
*** * *
74270893 AATTACCATTTTACCTCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
74270920 AATTACCA
1 AATTACCA
74270928 TTTTACCCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:74270928 original size:27 final size:27
Alignment explanation
Indices: 74270877--74271071 Score: 119
Period size: 27 Copynumber: 6.8 Consensus size: 27
74270867 ATTACCAAAG
*
74270877 TACCCCCGATTTACAGAATTACCATTT
1 TACCTCCGATTTACAGAATTACCATTT
*
74270904 TACCTCCGATTTACATAATTACCATTT
1 TACCTCCGATTTACAGAATTACCATTT
* * * *
74270931 TACCCCCGTTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCTCCG-ATT----T--AC--AG--AATTACCATTT
*
74270969 TATCCT-CGATTTACAGAATTATCATTT
1 TA-CCTCCGATTTACAGAATTACCATTT
* *
74270996 TACCGT-CGATTTATAGAATTACTATTT
1 TACC-TCCGATTTACAGAATTACCATTT
* *
74271023 TACC-CTTGATTTACAGAATTACTATTT
1 TACCTC-CGATTTACAGAATTACCATTT
*
74271050 TACC-CTCGATTTACAAAATTAC
1 TACCTC-CGATTTACAGAATTAC
74271072 TAAAATACCC
Statistics
Matches: 135, Mismatches: 18, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
26 2 0.01
27 105 0.78
28 2 0.01
29 1 0.01
31 2 0.01
32 1 0.01
33 1 0.01
34 2 0.01
36 1 0.01
37 2 0.01
38 14 0.10
39 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCTCCGATTTACAGAATTACCATTT
Found at i:74270935 original size:54 final size:54
Alignment explanation
Indices: 74270877--74271071 Score: 160
Period size: 54 Copynumber: 3.4 Consensus size: 54
74270867 ATTACCAAAG
*
74270877 TACCCCCGATTTACAGAATTACCATTTTACCTCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACAGAATTACCATTTTACCTCCGATTTACAGAATTACCATTT
* *
74270931 TACCCCCGTTTTACCCTCGACTTACAGAATTACCGTTTTATCCT-CGATTTACAGAATTATCATT
1 TACCCCCG----A---T----TTACAGAATTACCATTTTA-CCTCCGATTTACAGAATTACCATT
74270995 T
54 T
** * * * *
74270996 TACCGTCGATTTATAGAATTACTATTTTACC-CTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCATTTTACCTC-CGATTTACAGAATTACCATTT
* *
74271050 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
74271072 TAAAATACCC
Statistics
Matches: 113, Mismatches: 14, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
53 2 0.02
54 61 0.54
58 2 0.02
61 2 0.02
65 43 0.38
66 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCCCGATTTACAGAATTACCATTTTACCTCCGATTTACAGAATTACCATTT
Found at i:74270981 original size:65 final size:65
Alignment explanation
Indices: 74270877--74270999 Score: 185
Period size: 65 Copynumber: 1.9 Consensus size: 65
74270867 ATTACCAAAG
* *
74270877 TACCCCCGATTTACAGAATTACCATTTTACCTCCGATTTACATAATTACCATTTTACCCCCGTTT
1 TACCCCCGACTTACAGAATTACCATTTTACCTCCGATTTACAGAATTACCATTTTACCCCCGTTT
* * *
74270942 TACCCTCGACTTACAGAATTACCGTTTTATCCT-CGATTTACAGAATTATCATTTTACC
1 TACCCCCGACTTACAGAATTACCATTTTA-CCTCCGATTTACAGAATTACCATTTTACC
74271000 GTCGATTTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
65 49 0.94
66 3 0.06
ACGTcount: A:0.27, C:0.28, G:0.07, T:0.37
Consensus pattern (65 bp):
TACCCCCGACTTACAGAATTACCATTTTACCTCCGATTTACAGAATTACCATTTTACCCCCGTTT
Found at i:74271072 original size:27 final size:27
Alignment explanation
Indices: 74270939--74271073 Score: 182
Period size: 27 Copynumber: 5.0 Consensus size: 27
74270929 TTTACCCCCG
* **
74270939 TTTTACCCTCGACTTACAGAATTACCG
1 TTTTACCCTCGATTTACAGAATTACTA
*
74270966 TTTTATCCTCGATTTACAGAATTA-TCA
1 TTTTACCCTCGATTTACAGAATTACT-A
* *
74270993 TTTTACCGTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
74271020 TTTTACCCTTGATTTACAGAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
*
74271047 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAGAATTACTA
74271074 AAATACCCTT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 93 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAGAATTACTA
Found at i:74271080 original size:27 final size:27
Alignment explanation
Indices: 74270996--74271108 Score: 82
Period size: 27 Copynumber: 4.2 Consensus size: 27
74270986 ATTATCATTT
* * * ***
74270996 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
74271023 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
74271050 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
74271077 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
74271104 TACCC
1 TACCC
74271109 CTAGTTTGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:74271081 original size:54 final size:54
Alignment explanation
Indices: 74270976--74271084 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
74270966 TTTTATCCTC
* * * ***
74270976 GATTTACAGAATTATCATTTTACCGTCGATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
74271030 GATTTACAGAATTA-CTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 GATTTACAGAATTATC-ATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
74271084 G
1 G
74271085 GTTTGTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
53 1 0.02
54 47 0.98
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.40
Consensus pattern (54 bp):
GATTTACAGAATTATCATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
Found at i:74271097 original size:54 final size:54
Alignment explanation
Indices: 74270976--74271098 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
74270966 TTTTATCCTC
* * * * ***
74270976 GATTTACAGAATTA-TCATTTTACCGTCGATTTATAGAATTACTATTTTACCCTT
1 GATTTACAAAATTACT-ATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
*
74271030 GATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
1 GATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
* **
74271084 GGTTTGTAAAATTAC
1 GATTTACAAAATTAC
74271099 CAAAATACCC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (54 bp):
GATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTT
Found at i:74271097 original size:81 final size:81
Alignment explanation
Indices: 74270939--74271098 Score: 178
Period size: 81 Copynumber: 2.0 Consensus size: 81
74270929 TTTACCCCCG
* * * *** *
74270939 TTTTACCCTCGACTTACAGAATTACCGTTTTATCCTCGATTTACAGAATTATCATTTTACCGTCG
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCAAAATACCCTCG
*
74271004 ATTTATAGAATTACTA
66 ATTTATAAAATTACTA
* * * *
74271020 TTTTACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA-CTAAAATACCCTT
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATC-AAAATACCCTC
* *
74271084 GGTTTGTAAAATTAC
65 GATTTATAAAATTAC
74271099 CAAAATACCC
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
80 1 0.02
81 63 0.98
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCAAAATACCCTCG
ATTTATAAAATTACTA
Found at i:74271115 original size:27 final size:27
Alignment explanation
Indices: 74271064--74271119 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
74271054 CTCGATTTAC
* * *
74271064 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
74271091 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
74271118 AA
1 AA
74271120 TGACTAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:74271178 original size:27 final size:27
Alignment explanation
Indices: 74271138--74271204 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
74271128 ATGCCCCTAT
*
74271138 TAGGGTAAAGTGACCGTAA-AGCCCCTG
1 TAGGGTAAAATGACCGTAATA-CCCCTG
74271165 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
74271192 TATGGTAAAATGA
1 TAGGGTAAAATGA
74271205 TGAATATGCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:74272393 original size:25 final size:25
Alignment explanation
Indices: 74272364--74272411 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74272354 TTATAATATG
* * *
74272364 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74272389 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74272412 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74272473 original size:20 final size:20
Alignment explanation
Indices: 74272448--74272490 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
74272438 ATTTTGATAA
74272448 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74272468 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
74272488 ACA
1 ACA
74272491 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74272498 original size:20 final size:20
Alignment explanation
Indices: 74272455--74272498 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
74272445 TAAACATGAT
* *
74272455 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
74272475 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
74272495 ATGT
1 ATGT
74272499 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:74272603 original size:25 final size:24
Alignment explanation
Indices: 74272545--74272690 Score: 190
Period size: 25 Copynumber: 6.0 Consensus size: 24
74272535 AGGAAGTGCA
74272545 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
74272568 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
74272593 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
74272618 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
74272642 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
74272666 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
74272691 GATAAAGCAG
Statistics
Matches: 111, Mismatches: 6, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
23 22 0.20
24 31 0.28
25 58 0.52
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:74272685 original size:49 final size:47
Alignment explanation
Indices: 74272544--74272689 Score: 186
Period size: 49 Copynumber: 3.0 Consensus size: 47
74272534 GAGGAAGTGC
*
74272544 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-A
**
74272592 TGAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTAT-A-AAAGGGCTTATGCCCCAGTTATA
* *
74272641 AAAAGGGCTTTTGCCCCAGTTACTAAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATA
74272690 TGATAAAGCA
Statistics
Matches: 86, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
48 30 0.35
49 33 0.38
50 23 0.27
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATA
Found at i:74272918 original size:31 final size:31
Alignment explanation
Indices: 74272883--74272946 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
74272873 CGTTTACCGT
*
74272883 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
74272914 AAAGGTTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74272945 AA
1 AA
74272947 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74273622 original size:25 final size:24
Alignment explanation
Indices: 74273575--74273628 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
74273565 TAGTTTTCTC
*
74273575 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
74273599 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
74273624 TTAAT
1 TTAAT
74273629 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:74273864 original size:11 final size:11
Alignment explanation
Indices: 74273848--74273874 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
74273838 GAATTTATGG
74273848 CAAGTATTCGT
1 CAAGTATTCGT
74273859 CAAGTATTCGT
1 CAAGTATTCGT
74273870 CAAGT
1 CAAGT
74273875 TGCTGAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (11 bp):
CAAGTATTCGT
Found at i:74280683 original size:20 final size:20
Alignment explanation
Indices: 74280655--74280692 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74280645 CTAAGAACTA
74280655 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
74280675 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
74280693 TATATGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:74285328 original size:22 final size:22
Alignment explanation
Indices: 74285298--74285339 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
74285288 GTTTGTCAAT
*
74285298 GGAACAGGT-TGAAGAATGGAGA
1 GGAAAAGGTATGAAG-ATGGAGA
74285320 GGAAAAGGTATGAAGATGGA
1 GGAAAAGGTATGAAGATGGA
74285340 AGAAGAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.43, C:0.02, G:0.40, T:0.14
Consensus pattern (22 bp):
GGAAAAGGTATGAAGATGGAGA
Found at i:74287719 original size:38 final size:38
Alignment explanation
Indices: 74287672--74287744 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
74287662 TTCAAAAAGA
74287672 TTGTTTAATTCTCATTCATCCTACTTTTACATTTTTGT
1 TTGTTTAATTCTCATTCATCCTACTTTTACATTTTTGT
74287710 TTGTTTAATTCTCATTCATCCTACTTTTACATTTT
1 TTGTTTAATTCTCATTCATCCTACTTTTACATTTT
74287745 GTCTGGCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.04, T:0.58
Consensus pattern (38 bp):
TTGTTTAATTCTCATTCATCCTACTTTTACATTTTTGT
Found at i:74290035 original size:21 final size:20
Alignment explanation
Indices: 74290005--74290043 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
74289995 TAAAACTTGT
74290005 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
74290025 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
74290044 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:74292051 original size:28 final size:27
Alignment explanation
Indices: 74291986--74292070 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
74291976 AGGAAGCGTC
*
74291986 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
74292013 CTGGTGGCTCTGCCACGATTTTCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
74292041 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
74292067 CTGG
1 CTGG
74292071 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.10
27 30 0.59
28 16 0.31
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:74298865 original size:28 final size:27
Alignment explanation
Indices: 74298800--74298884 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
74298790 AGGAAGCGTC
*
74298800 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
74298827 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
74298855 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
74298881 CTGG
1 CTGG
74298885 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.09
27 32 0.60
28 16 0.30
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:74304599 original size:23 final size:23
Alignment explanation
Indices: 74304566--74304609 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
74304556 CTAGAAGTAA
*
74304566 TGATTACTTATATAATAGTTTCT
1 TGATTACTTATAAAATAGTTTCT
*
74304589 TGATTATTTATAAAATAGTTT
1 TGATTACTTATAAAATAGTTT
74304610 GGAGTATACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (23 bp):
TGATTACTTATAAAATAGTTTCT
Found at i:74307223 original size:26 final size:26
Alignment explanation
Indices: 74307194--74307300 Score: 178
Period size: 26 Copynumber: 4.1 Consensus size: 26
74307184 TGGTACAAAT
74307194 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74307220 TGATAATGGATTAGGTAAATATTCCC
1 TGATAATGGGTTAGGTAAATGTTCCA
74307246 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74307272 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74307298 TGA
1 TGA
74307301 CAGGCATTTC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74316088 original size:20 final size:20
Alignment explanation
Indices: 74316065--74316113 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
74316055 AGAGGTATTG
*
74316065 AAGTGCAAACAGAGGCACCA
1 AAGTGCAAAAAGAGGCACCA
* * *
74316085 AAGTGTAAAAAGAGGCATCG
1 AAGTGCAAAAAGAGGCACCA
74316105 AAGTGCAAA
1 AAGTGCAAA
74316114 GCCCATACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.27, T:0.10
Consensus pattern (20 bp):
AAGTGCAAAAAGAGGCACCA
Found at i:74317178 original size:69 final size:69
Alignment explanation
Indices: 74317099--74317233 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
74317089 TAAGAATTTT
*
74317099 TTTTTATGTTTTTATGTTTTAACTAATGTTTATAATTTTAATTAATTAACAAATACATTATTTTA
1 TTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTA
74317164 AATG
66 AATG
* *
74317168 TTTTTATGTTTTTATGTTTTAACTCATATTTATAATTTTAGTTAATTAACAAATACATTATTTTA
1 TTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTA
74317233 A
66 A
74317234 TTAAAACAAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (69 bp):
TTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTA
AATG
Found at i:74317796 original size:336 final size:336
Alignment explanation
Indices: 74317177--74317831 Score: 1035
Period size: 336 Copynumber: 1.9 Consensus size: 336
74317167 GTTTTTATGT
* * *
74317177 TTTTATGTTTTAACTCATATTTATAATTTTAGTTAATTAACAAATACATTATTTTAATTAAAACA
1 TTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAA
* * * ** *
74317242 ACATCAAATACCGTCCAGCAACCTTAATAATGGCTTAATTGTCCCTGTAAATCCACTCCCATTTA
66 ACATAAAATACCGTCCACCAACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTA
* * *
74317307 CTCACTAAATCATTTAATTAATAAAATTCAATAGTGATTAAGTTTTACATATTTTACGATTTAGT
131 CTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGT
* *
74317372 CATTTTTCTTTAATGAACTAACTAAGCGTTAAAATTTTCGAACCAAAACTCAACATATCAATGTA
196 CATTTTTCTTTAATGAACTAACTAAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGTA
* *
74317437 ATAACTCCGCAAATATTTACTAAAAATATTTATAG-GCTCATTTTTCATAAACGAGGTCTCACTT
261 ATAACTCCGCAAATATCTACTAAAAATATTTA-AGAGCTCAATTTTCATAAACGAGGTCTCACTT
74317501 ACATGATAATTG
325 ACATGATAATTG
* * *
74317513 TTTTATGTTTTGACTAATGTTTTTAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAA
1 TTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTAATT-AAAAA
* *
74317578 AACATAAAATACCGTCCACCAACCTTTATAATGGCTTAAGT-TCCCCATAATTCCACTCACATTT
65 AACATAAAATACCGTCCACCAACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTT
*
74317642 ACTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATCTTTTACGATTTAG
130 ACTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAG
* * *
74317707 TCCTTTTTCTTTAATTAACTAGCTAAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGT
195 TCATTTTTCTTTAATGAACTAACTAAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGT
* *
74317772 AATAACTCCGTAAATATCTACTAAAAATATTTACGAGCTCAATTTTCATAAACGAGGTCT
260 AATAACTCCGCAAATATCTACTAAAAATATTTAAGAGCTCAATTTTCATAAACGAGGTCT
74317832 TGACACCTCA
Statistics
Matches: 290, Mismatches: 27, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
335 1 0.00
336 248 0.86
337 41 0.14
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (336 bp):
TTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAA
ACATAAAATACCGTCCACCAACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTA
CTCACTAAACCATTTAATAAATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGT
CATTTTTCTTTAATGAACTAACTAAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGTA
ATAACTCCGCAAATATCTACTAAAAATATTTAAGAGCTCAATTTTCATAAACGAGGTCTCACTTA
CATGATAATTG
Found at i:74332066 original size:44 final size:43
Alignment explanation
Indices: 74332006--74332110 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
74331996 AATTATCGTA
* * * * *
74332006 TAAGACCGTGTTTGGGACACTGGCATCGAT-TTGAAATTTACGTG
1 TAAGACCATGTCTGGGACACAGGCATCGATACTG-AA-TTACATG
*
74332050 TAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTACATG
1 TAAGACCATGTCTGGGACACAGGCATCGATACTGAATTACATG
*
74332093 TAAGACCACGTCTGGGAC
1 TAAGACCATGTCTGGGAC
74332111 GTCAGCATTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 23 0.43
44 28 0.53
45 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACACAGGCATCGATACTGAATTACATG
Found at i:74336583 original size:57 final size:57
Alignment explanation
Indices: 74336506--74336685 Score: 247
Period size: 57 Copynumber: 3.1 Consensus size: 57
74336496 ATTTCCAAAT
*
74336506 CATTTTCATTTTTCATTTAGGAGAAAACCATATTCATTGCCAAATGTTTTCATTTCTC
1 CATTTTC-TTTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
* * *
74336564 CATTTTCTTTTTCATTTAGGAGAAAACGATATTCATTTCTAAATGTTTCCATTTCTC
1 CATTTTCTTTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
* * *
74336621 CATTTTCATTTTCATTTTA-GAGAAAACCATA-ACAATTTTCAAATGTTTATCATTTCTC
1 CATTTTCTTTTTCA-TTTAGGAGAAAACCATATTC-ATTTCCAAATGTTT-TCATTTCTC
74336679 CATTTTC
1 CATTTTC
74336686 ACAATTTCTA
Statistics
Matches: 109, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
56 1 0.01
57 82 0.75
58 26 0.24
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.46
Consensus pattern (57 bp):
CATTTTCTTTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
Found at i:74338565 original size:36 final size:37
Alignment explanation
Indices: 74338525--74338599 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
74338515 ATTATATACC
* *
74338525 GAATGAAGTTC-AATGAGCGA-TATCCACCGATATATT
1 GAATGAAGCTCAAATGAGC-ATTATCCACCAATATATT
*
74338561 GAATGAAGCTCAAATGAGCATTATCCACTAATATATT
1 GAATGAAGCTCAAATGAGCATTATCCACCAATATATT
74338598 GA
1 GA
74338600 CTGGTGCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 11 0.32
37 23 0.68
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (37 bp):
GAATGAAGCTCAAATGAGCATTATCCACCAATATATT
Found at i:74338586 original size:37 final size:36
Alignment explanation
Indices: 74338525--74338622 Score: 99
Period size: 37 Copynumber: 2.7 Consensus size: 36
74338515 ATTATATACC
* *
74338525 GAATGAAGTTCAATGAGCGATATCCACCGATATATT
1 GAATGAAGCTCAATGAGCGATATCCACCAATATATT
*
74338561 GAATGAAGCTCAAATGAGC-ATTATCCACTAATATATT
1 GAATGAAGCTC-AATGAGCGA-TATCCACCAATATATT
* ** *
74338598 GACTGGTGCTCAAACGAGCGATATC
1 GAATGAAGCTC-AATGAGCGATATC
74338623 AATTATGTGC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
36 11 0.21
37 40 0.77
38 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (36 bp):
GAATGAAGCTCAATGAGCGATATCCACCAATATATT
Found at i:74338670 original size:40 final size:40
Alignment explanation
Indices: 74338626--74338823 Score: 234
Period size: 40 Copynumber: 5.0 Consensus size: 40
74338616 CGATATCAAT
*
74338626 TATGTGCTTTTGAGCCATACCTACTGAATCTACTAAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * * * *
74338666 TATGTGCTTTCGAGCCCTGCCTTCTAAATCTACTGAAACA
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* *
74338706 TATGTGCTTTCGAGCCATACCTACTGAATCTGCTGAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * *
74338746 TATGTGCTTTTGAGCCATACCTACCGATTCCATTGAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * **
74338786 TATGCGCTATTGAGCCTTACCTACTGCTTCTACTGAAA
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAA
74338824 GCATGCTTTA
Statistics
Matches: 132, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (40 bp):
TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
Found at i:74342673 original size:28 final size:28
Alignment explanation
Indices: 74342610--74342732 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
74342600 ATATTAAGTC
*
74342610 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
74342637 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
74342665 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74342693 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
74342722 CGCACACTTAG
1 CGCACACTTAG
74342733 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74350872 original size:28 final size:28
Alignment explanation
Indices: 74350809--74350931 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
74350799 ATATTAAGTC
*
74350809 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
74350836 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
74350864 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74350892 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
74350921 CGCACACTTAG
1 CGCACACTTAG
74350932 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74354800 original size:19 final size:19
Alignment explanation
Indices: 74354776--74354813 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
74354766 GTATGTTGTG
74354776 TTTAAATTTATACAAACTT
1 TTTAAATTTATACAAACTT
*
74354795 TTTAAATTTATACGAACTT
1 TTTAAATTTATACAAACTT
74354814 ACTAAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAAATTTATACAAACTT
Found at i:74356281 original size:74 final size:75
Alignment explanation
Indices: 74356159--74356311 Score: 202
Period size: 74 Copynumber: 2.1 Consensus size: 75
74356149 AAAGGGCCAT
* *
74356159 GGCCCCCTAAGGTTTAAATTTTTTTTCAATTTAGCCCTTTGTAGATATACTATGGCCCACCCAAA
1 GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
*
74356224 AATATAAGTA
66 AATACAAGTA
**** * *
74356234 GGCCCCCTAAGGTTTAAGA-TTTTTGT-AATTTTTTTCTTTGTATATATACTATAGCCCTCCCAA
1 GGCCCCCTAAGGTTTAA-ATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAA
74356297 AAATACAAGTA
65 AAATACAAGTA
74356308 GGCC
1 GGCC
74356312 ATTCCAATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
74 44 0.65
75 23 0.34
76 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (75 bp):
GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
AATACAAGTA
Found at i:74364330 original size:28 final size:29
Alignment explanation
Indices: 74364285--74364339 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
74364275 CAAAAAATAT
*
74364285 TTTATATATATATTTATT-ATTTAAATGG
1 TTTATATATATATTTATTGATTAAAATGG
*
74364313 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATATATATATT-TATTGATTAAAAT
74364340 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTATATATATATTTATTGATTAAAATGG
Found at i:74364755 original size:29 final size:28
Alignment explanation
Indices: 74364705--74364773 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
74364695 TTAGTTGGTA
* *
74364705 AAGGTTAAGGGTTATGGATTATGGGTTT
1 AAGGTTAAAGGTCATGGATTATGGGTTT
*
74364733 AAGGATTAAAGGTCATGGGTTATGGGTTT
1 AAGG-TTAAAGGTCATGGATTATGGGTTT
74364762 AATGGTTAAAGG
1 AA-GGTTAAAGG
74364774 GATAGGGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.11
29 30 0.83
30 2 0.06
ACGTcount: A:0.29, C:0.01, G:0.35, T:0.35
Consensus pattern (28 bp):
AAGGTTAAAGGTCATGGATTATGGGTTT
Found at i:74364896 original size:14 final size:15
Alignment explanation
Indices: 74364879--74364911 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
74364869 TTTGGTTTAT
74364879 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
74364893 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
74364908 GGTT
1 GGTT
74364912 ACTAGATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:74364896 original size:21 final size:21
Alignment explanation
Indices: 74364853--74364911 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
74364843 GAGTTAATGT
* * **
74364853 TTTAAGGTTTAAAGATTTTGG
1 TTTAAGGTTTAAGGGTTGGGG
*
74364874 TTTATGGTTTAAGGGTTGGGG
1 TTTAAGGTTTAAGGGTTGGGG
*
74364895 TTTAAGGTTTAGGGGTT
1 TTTAAGGTTTAAGGGTT
74364912 ACTAGATTAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (21 bp):
TTTAAGGTTTAAGGGTTGGGG
Found at i:74365407 original size:26 final size:26
Alignment explanation
Indices: 74365378--74365511 Score: 241
Period size: 26 Copynumber: 5.2 Consensus size: 26
74365368 TGGTACAAAT
74365378 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74365404 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74365430 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74365456 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74365482 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74365508 TGAT
1 TGAT
74365512 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74368382 original size:26 final size:27
Alignment explanation
Indices: 74368316--74368383 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
74368306 TAAAATTTTA
74368316 AAGATTTCAAA-TTTAGAATAAATTTC
1 AAGATTTCAAATTTTAGAATAAATTTC
*
74368342 AAGATTTCAAATTTTA-AATAATTTTC
1 AAGATTTCAAATTTTAGAATAAATTTC
**
74368368 ATTATTTCAAATTTTA
1 AAGATTTCAAATTTTA
74368384 TCTAATTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 34 0.89
27 4 0.11
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
AAGATTTCAAATTTTAGAATAAATTTC
Found at i:74369173 original size:27 final size:28
Alignment explanation
Indices: 74369128--74369183 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
74369118 TCGCCAGACC
* *
74369128 CGACCATCTGTTGTATCACCGTCG-ACT
1 CGACCATCTGCTGCATCACCGTCGCACT
* *
74369155 CGACCATCTGCTGCGTCACCTTCGCACT
1 CGACCATCTGCTGCATCACCGTCGCACT
74369183 C
1 C
74369184 CTCTTTCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.16, C:0.39, G:0.18, T:0.27
Consensus pattern (28 bp):
CGACCATCTGCTGCATCACCGTCGCACT
Found at i:74372064 original size:10 final size:10
Alignment explanation
Indices: 74372049--74372076 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
74372039 TTCAATCAAG
74372049 GTATGAATAA
1 GTATGAATAA
74372059 GTATGAATAA
1 GTATGAATAA
74372069 GTATGAAT
1 GTATGAAT
74372077 TAATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32
Consensus pattern (10 bp):
GTATGAATAA
Done.