Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 228 of 290
Found at i:74372889 original size:243 final size:244
Alignment explanation
Indices: 74372096--74372892 Score: 1497
Period size: 244 Copynumber: 3.3 Consensus size: 244
74372086 TACCATGTAC
74372096 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
*
74372161 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
* *
74372226 GATCCTCCCTAGGTGTAACAATGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAGA
131 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
74372291 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
74372340 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTCTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
*
74372405 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCAAGCTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
74372470 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
131 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
74372535 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
74372584 CTTTCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
74372649 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
*
74372714 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTT-AAAAATTCAAAAAGACTTGAAAA
131 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
74372778 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
** *
74372827 CTTGCTTGTCCATTAAAATTACAACAATAGCCAACCTTCTCTCCAACCTTAATTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
74372892 A
66 A
74372893 TCTAATAATT
Statistics
Matches: 540, Mismatches: 13, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
243 134 0.25
244 406 0.75
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.33
Consensus pattern (244 bp):
CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
Found at i:74378415 original size:21 final size:21
Alignment explanation
Indices: 74378373--74378416 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
74378363 TCAACTTAGA
* * *
74378373 GCGGAGGCAGCAGTGCGGGAG
1 GCGGAGGCAGCAGCGAGAGAG
74378394 GCGGAGGCAGCAGCGAGAGAG
1 GCGGAGGCAGCAGCGAGAGAG
74378415 GC
1 GC
74378417 AGAGCAGAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.20, G:0.55, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGAGAG
Found at i:74382243 original size:16 final size:17
Alignment explanation
Indices: 74382222--74382267 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
74382212 AGAATTAGTG
74382222 AAAAAAAAGTGAAAT-T
1 AAAAAAAAGTGAAATAT
*
74382238 AAAAAAAATTCG-AATAT
1 AAAAAAAAGT-GAAATAT
74382255 AAAAAAAAG-GAAA
1 AAAAAAAAGTGAAA
74382268 AAAAGTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 1 0.04
16 14 0.56
17 10 0.40
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.15
Consensus pattern (17 bp):
AAAAAAAAGTGAAATAT
Found at i:74383130 original size:13 final size:14
Alignment explanation
Indices: 74383112--74383148 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
74383102 AACCGCTTGT
*
74383112 AAAAGAAAATGA-G
1 AAAAGAAAAAGATG
74383125 AAAAGAAAAAGATG
1 AAAAGAAAAAGATG
74383139 AAAAGAAAAA
1 AAAAGAAAAA
74383149 AGAGATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (14 bp):
AAAAGAAAAAGATG
Found at i:74383141 original size:14 final size:13
Alignment explanation
Indices: 74383112--74383153 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
74383102 AACCGCTTGT
*
74383112 AAAAGAAAATGAG
1 AAAAGAAAAAGAG
74383125 AAAAGAAAAAGATG
1 AAAAGAAAAAGA-G
74383139 AAAAGAAAAAAGAG
1 AAAAG-AAAAAGAG
74383153 A
1 A
74383154 TCAAAAGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 8 0.31
15 7 0.27
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:74383284 original size:12 final size:12
Alignment explanation
Indices: 74383267--74383304 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
74383257 AAAACAAATT
74383267 GAGATTGAAAAA
1 GAGATTGAAAAA
*
74383279 GAGATTGACAAA
1 GAGATTGAAAAA
*
74383291 GAGAATGAAAAA
1 GAGATTGAAAAA
74383303 GA
1 GA
74383305 AAAAGAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.58, C:0.03, G:0.26, T:0.13
Consensus pattern (12 bp):
GAGATTGAAAAA
Found at i:74386315 original size:26 final size:26
Alignment explanation
Indices: 74386285--74386334 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
74386275 TCACATTGTA
74386285 TGCCCATTGGAGTTTC-TTCATTCATC
1 TGCCCATTGGAG-TTCATTCATTCATC
*
74386311 TGCCCATTGGTGTTCATTCATTCA
1 TGCCCATTGGAGTTCATTCATTCA
74386335 CATCATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (26 bp):
TGCCCATTGGAGTTCATTCATTCATC
Found at i:74395596 original size:40 final size:35
Alignment explanation
Indices: 74395549--74395646 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 35
74395539 GTAACAGTTT
74395549 GGGCCTTAGCCCATCTCAATACAGTATCAAATATGCAGTA
1 GGGCCTTAGCCCAT-TC-AT--AGTATC-AATATGCAGTA
* *
74395589 GGGCCTTAGCCCA-TCATAGTATCAGTATGCATTA
1 GGGCCTTAGCCCATTCATAGTATCAATATGCAGTA
*
74395623 GGGCCTTAGCCCATT-ACAGTATCA
1 GGGCCTTAGCCCATTCATAGTATCA
74395647 GTAGCAATCG
Statistics
Matches: 54, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
34 30 0.56
35 7 0.13
37 2 0.04
38 2 0.04
40 13 0.24
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (35 bp):
GGGCCTTAGCCCATTCATAGTATCAATATGCAGTA
Found at i:74395625 original size:34 final size:34
Alignment explanation
Indices: 74395569--74395649 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 34
74395559 CCATCTCAAT
*
74395569 ACAGTATCAAATATGCAGTAGGGCCTTAGCCCATC
1 ACAGTATC-AGTATGCAGTAGGGCCTTAGCCCATC
* * *
74395604 ATAGTATCAGTATGCATTAGGGCCTTAGCCCATT
1 ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
74395638 ACAGTATCAGTA
1 ACAGTATCAGTA
74395650 GCAATCGTGC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
34 34 0.83
35 7 0.17
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (34 bp):
ACAGTATCAGTATGCAGTAGGGCCTTAGCCCATC
Found at i:74397312 original size:42 final size:43
Alignment explanation
Indices: 74397261--74397354 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
74397251 TCCCGGACAG
* * *
74397261 GGTCTTACACAAAATC-GATTAACGATGCCAATGT-CCAAACAT
1 GGTCTTACACAAAATCTCAAT-ACAATGCCAATGTCCCAAACAT
** *
74397303 GGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACAAAATCTCAATACAATGCCAATGTCCCAAACAT
74397346 GGTCTTACA
1 GGTCTTACA
74397355 TGTAATCACA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 26 0.59
43 18 0.41
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
GGTCTTACACAAAATCTCAATACAATGCCAATGTCCCAAACAT
Found at i:74404296 original size:20 final size:21
Alignment explanation
Indices: 74404253--74404298 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
74404243 ATTGTTTTGT
74404253 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
74404273 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
74404292 TATGGGC
1 TATGGGC
74404299 AAGGCCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:74411351 original size:13 final size:14
Alignment explanation
Indices: 74411333--74411363 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
74411323 GTCAATATTT
74411333 TATAATTACTT-AA
1 TATAATTACTTAAA
74411346 TATAATTACTTAAA
1 TATAATTACTTAAA
74411360 TATA
1 TATA
74411364 GCAACCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (14 bp):
TATAATTACTTAAA
Found at i:74412143 original size:10 final size:9
Alignment explanation
Indices: 74412121--74412159 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
74412111 AAATAGTTAA
*
74412121 TTAAATTAT
1 TTAATTTAT
74412130 TTAATTTAAT
1 TTAATTT-AT
74412140 TTAATTTAT
1 TTAATTTAT
74412149 TTAATTATAT
1 TTAATT-TAT
74412159 T
1 T
74412160 GTATATTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 14 0.52
10 13 0.48
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTAATTTAT
Found at i:74412148 original size:19 final size:18
Alignment explanation
Indices: 74412117--74412154 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
74412107 GGATAAATAG
74412117 TTAATTAAATTATTTAAT
1 TTAATTAAATTATTTAAT
*
74412135 TTAATTTAATTTATTTAAT
1 TTAA-TTAAATTATTTAAT
74412154 T
1 T
74412155 ATATTGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTAATTAAATTATTTAAT
Found at i:74415244 original size:10 final size:10
Alignment explanation
Indices: 74415225--74415274 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
74415215 TTAAATTCTA
74415225 AAAGATAAAT
1 AAAGATAAAT
74415235 ACAA-ATAAAT
1 A-AAGATAAAT
*
74415245 AAAGATAATT
1 AAAGATAAAT
74415255 AAAGATAAAT
1 AAAGATAAAT
74415265 GAAA-ATAAAT
1 -AAAGATAAAT
74415275 CTTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:74418709 original size:29 final size:28
Alignment explanation
Indices: 74418608--74418698 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
74418598 AGGAAGCGTC
74418608 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
74418636 CTAGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
74418664 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
74418693 CTGGTG
1 CTGGTG
74418699 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:74418723 original size:56 final size:55
Alignment explanation
Indices: 74418608--74418723 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
74418598 AGGAAGCGTC
* *
74418608 CTGGTGGCTATGCCACAAATTATCTGTTCTAGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCAC-AATTATCTGTT
* * * *
74418664 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACAATTATCTGT-T
74418720 CTGG
1 CTGG
74418724 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 29 0.57
57 13 0.25
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACAATTATCTGTT
Found at i:74425206 original size:12 final size:13
Alignment explanation
Indices: 74425178--74425210 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
74425168 TTATTTCTTT
74425178 TTCTCCATCTACC
1 TTCTCCATCTACC
*
74425191 TTCTCC-TCTTCC
1 TTCTCCATCTACC
74425203 TTCTCCAT
1 TTCTCCAT
74425211 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:74426305 original size:28 final size:28
Alignment explanation
Indices: 74426273--74426337 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
74426263 ATGTACTAGA
* *
74426273 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGAAAAATGACC-TCT
74426301 ATACCCCTATGTATGAAAAATGACCTCT
1 ATACCCCTATGTATGAAAAATGACCTCT
74426329 ATACCCCTA
1 ATACCCCTA
74426338 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCTCT
Found at i:74426544 original size:29 final size:28
Alignment explanation
Indices: 74426443--74426533 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
74426433 AGGAAGCGTC
74426443 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
74426471 CTTGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
74426499 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
74426528 CTGGTG
1 CTGGTG
74426534 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:74426558 original size:56 final size:55
Alignment explanation
Indices: 74426443--74426558 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 55
74426433 AGGAAGCGTC
* * *
74426443 CTGGTGGCTATGCCACAAATTATCTGTTCTTGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCAC-AATTATCTGTT
* * *
74426499 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
74426555 CTGG
1 CTGG
74426559 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
55 9 0.18
56 29 0.57
57 13 0.25
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:74431693 original size:17 final size:17
Alignment explanation
Indices: 74431667--74431700 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74431657 CGGAAGAGAT
*
74431667 GATGAGATCTCAATATC
1 GATGAAATCTCAATATC
74431684 GATGAAATCTCAATATC
1 GATGAAATCTCAATATC
74431701 CTTACCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (17 bp):
GATGAAATCTCAATATC
Found at i:74443359 original size:40 final size:40
Alignment explanation
Indices: 74443171--74443395 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
74443161 TTGAATGATG
* * * *
74443171 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
74443211 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74443250 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
74443290 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74443330 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74443371 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74443396 AATGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 38 0.23
40 120 0.72
41 9 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74451278 original size:41 final size:40
Alignment explanation
Indices: 74451128--74451313 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
74451118 TTGAATGATG
* * * *
74451128 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
74451168 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74451208 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74451247 TCCGGGTTAAGTCCCGAAGGCAATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGC-ATTTGTGCGAGTTACTA-AA
*
74451289 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74451314 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 34 0.27
40 46 0.37
41 43 0.34
42 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74451335 original size:80 final size:79
Alignment explanation
Indices: 74451181--74451346 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 79
74451171 GGACTAAGAT
** **
74451181 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
74451246 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
74451260 CCGAAGGCAATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCGAAGGC-ATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
* *
74451323 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
74451340 CCGAAGG
1 CCGAAGG
74451347 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
79 10 0.14
80 39 0.53
81 25 0.34
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:74460218 original size:38 final size:38
Alignment explanation
Indices: 74459909--74460200 Score: 433
Period size: 38 Copynumber: 7.6 Consensus size: 38
74459899 ATTTGATGTG
* * *
74459909 TATCCGGGCTTAAAGACCCACAGGCTTCGTGCTAGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
*
74459949 TATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
74459987 TAT-CGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
74460026 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
74460064 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
74460102 TATCCAGGTTAAATCTCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
74460140 TATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
74460178 TATCCGGGTTAAATCCCGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
74460201 CTAGTACTTG
Statistics
Matches: 229, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
37 3 0.01
38 179 0.78
39 36 0.16
40 11 0.05
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:74460271 original size:45 final size:45
Alignment explanation
Indices: 74460215--74460346 Score: 150
Period size: 45 Copynumber: 3.0 Consensus size: 45
74460205 TACTTGTATT
* * * *
74460215 ATATTCAGGCCTTTGAGCCTAGCAGGCTATTATGTCGGTGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
*
74460259 ACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
1 A-TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
*
74460305 ATATT-GAGCC-TTGAGCCTAGCAGG-TGA-AATGCCGGTGA-ATG
1 ATATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGACATG
74460346 A
1 A
74460347 ATAAAAGTCT
Statistics
Matches: 78, Mismatches: 7, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
41 4 0.05
42 12 0.15
43 14 0.18
44 5 0.06
45 42 0.54
46 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
Found at i:74465844 original size:116 final size:116
Alignment explanation
Indices: 74465635--74465965 Score: 549
Period size: 116 Copynumber: 2.9 Consensus size: 116
74465625 ATTTGATGTG
* *
74465635 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGAGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
* *
74465700 CATGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* *
74465751 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
74465816 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* * * *
74465867 TATCCGAG-TTAAA-TCCTGCAGGCTTCGTGCTGGTAATATATCCGGATTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
*
74465930 CGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGC
74465966 CTAGTACTGG
Statistics
Matches: 202, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
114 80 0.40
115 5 0.02
116 117 0.58
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (116 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
Found at i:74465976 original size:38 final size:38
Alignment explanation
Indices: 74465651--74465965 Score: 522
Period size: 38 Copynumber: 8.2 Consensus size: 38
74465641 GGCTTAAAGA
*
74465651 CCCGCAGGCTTCGTGCTGGTAATATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
74465689 CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
74465727 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAA-T
* *
74465767 CCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
74465805 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
74465843 CCCGCAGGCTTCATGCTGGTAATATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
74465881 CCTGCAGGCTTCGTGCTGGTAATATATCCGGATTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
74465919 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
74465957 CCCGCAGGC
1 CCCGCAGGC
74465966 CTAGTACTGG
Statistics
Matches: 257, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
38 217 0.84
39 10 0.04
40 30 0.12
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:74466044 original size:45 final size:45
Alignment explanation
Indices: 74465979--74466110 Score: 159
Period size: 45 Copynumber: 3.0 Consensus size: 45
74465969 GTACTGGTTT
* * *
74465979 ATATTCAGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
74466023 ACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
1 A-TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
* *
74466069 ATA-TCGAGCC-TTGAGCCTAGCAGG-TGA-AATGCCGGTGA-ATG
1 ATATTCGGGCCTTTGAGCCTAGTAGGCT-ATAATGCCGGTGACATG
74466110 A
1 A
74466111 ATAAAAGTCT
Statistics
Matches: 80, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
41 4 0.05
42 12 0.15
43 14 0.17
44 7 0.09
45 42 0.52
46 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
Found at i:74467783 original size:32 final size:32
Alignment explanation
Indices: 74467747--74467812 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
74467737 CTATCATATG
74467747 ATGGCATAATAACATAATCACCAAGATTATTC
1 ATGGCATAATAACATAATCACCAAGATTATTC
74467779 ATGGCATAATAACATAATCACCAAGATTATTC
1 ATGGCATAATAACATAATCACCAAGATTATTC
74467811 AT
1 AT
74467813 CATTCAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (32 bp):
ATGGCATAATAACATAATCACCAAGATTATTC
Found at i:74468604 original size:16 final size:16
Alignment explanation
Indices: 74468583--74468636 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
74468573 AGAATTAGAT
74468583 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
74468599 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
74468609 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
74468625 AAAATTTGAAAT
1 AAAATTTGAAAT
74468637 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:74468790 original size:8 final size:7
Alignment explanation
Indices: 74468749--74468805 Score: 60
Period size: 7 Copynumber: 7.7 Consensus size: 7
74468739 AATTACCTTA
74468749 AACCCCT
1 AACCCCT
74468756 AACCCCT
1 AACCCCT
*
74468763 ATCCCCTT
1 AACCCC-T
* *
74468771 AATGCCTT
1 AA-CCCCT
74468779 AACCCCT
1 AACCCCT
74468786 AAACCCCT
1 -AACCCCT
74468794 AACCCCT
1 AACCCCT
74468801 AACCC
1 AACCC
74468806 ATGCCCTCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
7 27 0.66
8 12 0.29
9 2 0.05
ACGTcount: A:0.28, C:0.51, G:0.02, T:0.19
Consensus pattern (7 bp):
AACCCCT
Found at i:74468798 original size:15 final size:15
Alignment explanation
Indices: 74468749--74468802 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
74468739 AATTACCTTA
74468749 AACCCCT-AACCCCT
1 AACCCCTAAACCCCT
* ** *
74468763 ATCCCCTTAATGCCTT
1 AACCCC-TAAACCCCT
74468779 AACCCCTAAACCCCT
1 AACCCCTAAACCCCT
74468794 AACCCCTAA
1 AACCCCTAA
74468803 CCCATGCCCT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
14 5 0.17
15 16 0.53
16 9 0.30
ACGTcount: A:0.30, C:0.48, G:0.02, T:0.20
Consensus pattern (15 bp):
AACCCCTAAACCCCT
Found at i:74468854 original size:37 final size:37
Alignment explanation
Indices: 74468776--74468857 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
74468766 CCCTTAATGC
* *
74468776 CTTAACCCCTAAACCCCTAACCCCTAACCCATGCCCT
1 CTTAACCCCTAAACCCCTAACCCCTAAACCATGCCCA
* * * *
74468813 CTTAATCCTTAAACCCCTAA-CCCTAAAACTATGTCCA
1 CTTAACCCCTAAACCCCTAACCCCT-AAACCATGCCCA
74468850 CTTAACCC
1 CTTAACCC
74468858 ACCCTTAACC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
36 4 0.11
37 33 0.89
ACGTcount: A:0.30, C:0.44, G:0.02, T:0.23
Consensus pattern (37 bp):
CTTAACCCCTAAACCCCTAACCCCTAAACCATGCCCA
Found at i:74468891 original size:22 final size:21
Alignment explanation
Indices: 74468860--74468904 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
74468850 CTTAACCCAC
*
74468860 CCTTAACCCTTAAA-TCTTAAA
1 CCTTAACCC-TAAACTCCTAAA
74468881 CCTTAAACCCTAAACTCCTAAA
1 CCTT-AACCCTAAACTCCTAAA
74468903 CC
1 CC
74468905 CAACCCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.27
Consensus pattern (21 bp):
CCTTAACCCTAAACTCCTAAA
Found at i:74468894 original size:14 final size:14
Alignment explanation
Indices: 74468867--74469107 Score: 79
Period size: 14 Copynumber: 17.4 Consensus size: 14
74468857 CACCCTTAAC
* *
74468867 CCTTAAATCTTAAA
1 CCTTAAACCATAAA
*
74468881 CCTTAAACCCTAAA
1 CCTTAAACCATAAA
* * *
74468895 CTCCTAAACC-CAAC
1 C-CTTAAACCATAAA
74468909 CCTTAAACCATAAA
1 CCTTAAACCATAAA
* *
74468923 CCATAATCCATAAA
1 CCTTAAACCATAAA
* *
74468937 CC-CACAATCCATAAT
1 CCTTA-AA-CCATAAA
* *
74468952 CCATAATCCATAAA
1 CCTTAAACCATAAA
74468966 CCTTAAA--AT--A
1 CCTTAAACCATAAA
74468976 --TT-AACTCATAAA
1 CCTTAAAC-CATAAA
* *
74468988 CCATAAATCCCTAAA
1 CCTTAAA-CCATAAA
* ** *
74469003 TCTTAAACCCCAAC
1 CCTTAAACCATAAA
* * *
74469017 CCATAATCCCTAAA
1 CCTTAAACCATAAA
74469031 -CTTATAATCCATAAA
1 CCTTA-AA-CCATAAA
* ** *
74469046 CCCTAAAATATTAA
1 CCTTAAACCATAAA
* *
74469060 CTCATAAACCATAAT
1 C-CTTAAACCATAAA
*
74469075 CCTTAAACCATATA
1 CCTTAAACCATAAA
*
74469089 CCCTAAACCATAAA
1 CCTTAAACCATAAA
74469103 CCTTA
1 CCTTA
74469108 GACTATAATG
Statistics
Matches: 162, Mismatches: 47, Indels: 36
0.66 0.19 0.15
Matches are distributed among these distances:
7 2 0.01
8 2 0.01
10 3 0.02
12 3 0.02
13 11 0.07
14 91 0.56
15 45 0.28
16 5 0.03
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (14 bp):
CCTTAAACCATAAA
Found at i:74468902 original size:8 final size:7
Alignment explanation
Indices: 74468858--74468939 Score: 51
Period size: 7 Copynumber: 11.6 Consensus size: 7
74468848 CACTTAACCC
*
74468858 ACCCTTA
1 ACCCTAA
74468865 ACCCTTAA
1 ACCC-TAA
* *
74468873 ATCTTAA
1 ACCCTAA
*
74468880 ACCTTAA
1 ACCCTAA
74468887 ACCCTAA
1 ACCCTAA
74468894 ACTCCTAA
1 AC-CCTAA
74468902 ACCC--A
1 ACCCTAA
74468907 ACCCTTAA
1 ACCC-TAA
*
74468915 ACCATAA
1 ACCCTAA
*
74468922 ACCATAA
1 ACCCTAA
* *
74468929 TCCATAA
1 ACCCTAA
74468936 ACCC
1 ACCC
74468940 ACAATCCATA
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
5 5 0.08
7 41 0.67
8 15 0.25
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (7 bp):
ACCCTAA
Found at i:74468914 original size:35 final size:34
Alignment explanation
Indices: 74468875--74468967 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 34
74468865 ACCCTTAAAT
* *
74468875 CTTAAACCTTAAACCCTAAACTCC-TAAACCCAACC
1 CTTAAACCATAAACCAT-AA-TCCATAAACCCAACC
74468910 CTTAAACCATAAACCATAATCCATAAACCC-A--
1 CTTAAACCATAAACCATAATCCATAAACCCAACC
* *
74468941 C--AATCCATAATCCATAATCCATAAACC
1 CTTAAACCATAAACCATAATCCATAAACC
74468968 TTAAAATATT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
29 24 0.45
31 1 0.02
33 4 0.08
34 9 0.17
35 15 0.28
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.20
Consensus pattern (34 bp):
CTTAAACCATAAACCATAATCCATAAACCCAACC
Found at i:74468922 original size:20 final size:20
Alignment explanation
Indices: 74468886--74468924 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
74468876 TTAAACCTTA
*
74468886 AACCCTAAACTCCTAAACCC
1 AACCCTAAACTCATAAACCC
74468906 AACCCTTAAAC-CATAAACC
1 AACCC-TAAACTCATAAACC
74468925 ATAATCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (20 bp):
AACCCTAAACTCATAAACCC
Found at i:74468924 original size:7 final size:7
Alignment explanation
Indices: 74468912--74469104 Score: 98
Period size: 7 Copynumber: 26.9 Consensus size: 7
74468902 ACCCAACCCT
74468912 TAAACCA
1 TAAACCA
74468919 TAAACCA
1 TAAACCA
*
74468926 TAATCCA
1 TAAACCA
74468933 TAAACCCA
1 TAAA-CCA
* *
74468941 CAATCCA
1 TAAACCA
*
74468948 TAATCCA
1 TAAACCA
*
74468955 TAATCCA
1 TAAACCA
*
74468962 TAAACCT
1 TAAACCA
**
74468969 TAAAATA
1 TAAACCA
*
74468976 TTAACTCA
1 TAAAC-CA
74468984 TAAACCA
1 TAAACCA
*
74468991 TAAATCCC
1 TAAA-CCA
* *
74468999 TAAATCT
1 TAAACCA
*
74469006 TAAACCC
1 TAAACCA
* *
74469013 CAACCCA
1 TAAACCA
* *
74469020 TAATCCC
1 TAAACCA
*
74469027 TAAACTTA
1 TAAAC-CA
*
74469035 TAATCCA
1 TAAACCA
*
74469042 TAAACCC
1 TAAACCA
**
74469049 TAAAATA
1 TAAACCA
*
74469056 TTAACTCA
1 TAAAC-CA
74469064 TAAACCA
1 TAAACCA
* *
74469071 TAATCCT
1 TAAACCA
74469078 TAAACCA
1 TAAACCA
* *
74469085 TATACCC
1 TAAACCA
74469092 TAAACCA
1 TAAACCA
74469099 TAAACC
1 TAAACC
74469105 TTAGACTATA
Statistics
Matches: 134, Mismatches: 47, Indels: 10
0.70 0.25 0.05
Matches are distributed among these distances:
7 109 0.81
8 25 0.19
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.24
Consensus pattern (7 bp):
TAAACCA
Found at i:74469003 original size:29 final size:29
Alignment explanation
Indices: 74468953--74469081 Score: 73
Period size: 29 Copynumber: 4.7 Consensus size: 29
74468943 ATCCATAATC
* *
74468953 CATAATCCATAAA-CCTTAAAATATTAACT
1 CATAAACCATAAATCCCT-AAATATTAACT
*
74468982 CATAAACCATAAATCCCTAAATCTTAAAC-
1 CATAAACCATAAATCCCTAAATATT-AACT
** *
74469011 CCCAACCCAT-AATCCC----TA--AACT
1 CATAAACCATAAATCCCTAAATATTAACT
* *
74469033 TATAATCCATAAA-CCCTAAAATATTAACT
1 CATAAACCATAAATCCCT-AAATATTAACT
*
74469062 CATAAACCAT-AATCCTTAAA
1 CATAAACCATAAATCCCTAAA
74469082 CCATATACCC
Statistics
Matches: 74, Mismatches: 14, Indels: 25
0.65 0.12 0.22
Matches are distributed among these distances:
21 3 0.04
22 9 0.12
23 2 0.03
24 1 0.01
27 2 0.03
28 11 0.15
29 40 0.54
30 6 0.08
ACGTcount: A:0.47, C:0.27, G:0.00, T:0.26
Consensus pattern (29 bp):
CATAAACCATAAATCCCTAAATATTAACT
Found at i:74469692 original size:39 final size:40
Alignment explanation
Indices: 74469646--74469741 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
74469636 TTAATTTGAG
* *
74469646 GCGTTTTTAAAAAATGC-C-GGTAATGCTCGATCTATAGCA
1 GCGTTTTTAAAAAA-GCGCAGCTAAAGCTCGATCTATAGCA
* *
74469685 GCGTTTTTCAAAAAGCGCAGCTAAAGCTCGATCTATAGCG
1 GCGTTTTTAAAAAAGCGCAGCTAAAGCTCGATCTATAGCA
**
74469725 GCGTTTTCCAAAAAGCG
1 GCGTTTTTAAAAAAGCG
74469742 TTGCTAATGC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.04
39 14 0.28
40 34 0.68
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (40 bp):
GCGTTTTTAAAAAAGCGCAGCTAAAGCTCGATCTATAGCA
Found at i:74469708 original size:114 final size:111
Alignment explanation
Indices: 74469420--74469708 Score: 339
Period size: 114 Copynumber: 2.6 Consensus size: 111
74469410 ATTTTTTGCA
* * * * *
74469420 GCGTTTTTGAAAAAGCGCTACTATAGCTAGATCTATAGCGGCTTTTTTCAAAAAGCGCCGCTAAT
1 GCGTTTTT-AAAAAGCACTGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAAT
* ** *
74469485 ACCACTAAGGCTAAAAAAACGATGGCGTGTTGATGAATTAATTTGCG
65 ACCACTAAAGCTAAAAAAACGACCGCGTGTTGATGAATTAATTTGAG
* * * * *
74469532 GCGTTTTTTAAAAGCACTTCTAAAGCTCGATCTATAGCGGCGTTTTTGAAAAAGCACCGCTAATG
1 GCGTTTTTAAAAAGCACTGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATA
*
74469597 CCACTAAAGCTCAACAAAAAATGACCGCGTGTTGATGAATTAATTTGAG
66 CCACTAAAGCT--A-AAAAAACGACCGCGTGTTGATGAATTAATTTGAG
* * * *
74469646 GCGTTTTTAAAAAATGC-C-GGTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGCGCAGCTAA
1 GCGTTTTT-AAAAA-GCACTGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAA
74469709 AGCTCGATCT
Statistics
Matches: 150, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
111 58 0.39
112 8 0.05
113 1 0.01
114 76 0.51
115 5 0.03
116 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (111 bp):
GCGTTTTTAAAAAGCACTGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATA
CCACTAAAGCTAAAAAAACGACCGCGTGTTGATGAATTAATTTGAG
Found at i:74469960 original size:40 final size:40
Alignment explanation
Indices: 74469905--74470029 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
74469895 GCGGTGTTTT
* *
74469905 CTAATGTTCGATCTATAGCGGCGTTTTTC-AAAAAGCGTCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTCTAAAAA-CGCCG
**
74469945 CTAATGCTCGATCTATAGCGGCGCATTTCTAAAAACGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTCTAAAAACGCCG
* * * *
74469985 CTAGTGGTCGATCTATAGCGGCGTTTTTTGTACAAACGCCG
1 CTAATGCTCGATCTATAGCGGCG-TTTTTCTAAAAACGCCG
74470026 CTAA
1 CTAA
74470030 AAACTTGTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
40 51 0.71
41 21 0.29
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (40 bp):
CTAATGCTCGATCTATAGCGGCGTTTTTCTAAAAACGCCG
Found at i:74475141 original size:20 final size:22
Alignment explanation
Indices: 74475099--74475143 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
74475089 TTTTTTTACA
*
74475099 TTTTATATAAAATTTTAATATT
1 TTTTATATAAAATTGTAATATT
74475121 TTTTATA-AAAATTGTAA-ATT
1 TTTTATATAAAATTGTAATATT
74475141 TTT
1 TTT
74475144 AAAATGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 9 0.41
22 7 0.32
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTATATAAAATTGTAATATT
Found at i:74475552 original size:11 final size:11
Alignment explanation
Indices: 74475536--74475560 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
74475526 AATTTTTAAA
74475536 TTTTAATAATT
1 TTTTAATAATT
74475547 TTTTAATAATT
1 TTTTAATAATT
74475558 TTT
1 TTT
74475561 ACAACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTAATAATT
Found at i:74475555 original size:28 final size:28
Alignment explanation
Indices: 74475524--74475601 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 28
74475514 AAAAAAAATT
**
74475524 ATAATTTTTA-AATTTTAATAATTTTTTA
1 ATAATTTTTACAATTTTAAT-ATTTTAAA
74475552 ATAATTTTTACAACTTTTTAATATTTTAAA
1 ATAATTTTTACAA--TTTTAATATTTTAAA
* *
74475582 ATGATTTTTATATATTTTAA
1 ATAATTTTTACA-ATTTTAA
74475602 AATAAATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
28 10 0.24
29 8 0.19
30 16 0.38
31 8 0.19
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (28 bp):
ATAATTTTTACAATTTTAATATTTTAAA
Found at i:74475559 original size:20 final size:19
Alignment explanation
Indices: 74475534--74475604 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 19
74475524 ATAATTTTTA
74475534 AATTTTAATAATTTTTTAAT
1 AATTTTAA-AATTTTTTAAT
* *
74475554 AATTTTTACAACTTTTTAAT
1 AA-TTTTAAAATTTTTTAAT
74475574 -ATTTTAAAATGATTTTT-AT
1 AATTTTAAAAT--TTTTTAAT
74475593 ATATTTTAAAAT
1 A-ATTTTAAAAT
74475605 AAATTTCGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
18 7 0.17
19 3 0.07
20 17 0.40
21 15 0.36
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.56
Consensus pattern (19 bp):
AATTTTAAAATTTTTTAAT
Found at i:74477993 original size:42 final size:43
Alignment explanation
Indices: 74477898--74477995 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
74477888 CTCATTTAGC
* * * *
74477898 GGTCCGAGTTCGTGATATATGTGAGAATCTGAACTTGTTGAGT
1 GGTCCGAGTTCATGATATATGTGAGAACCTGAAATCGTTGAGT
* * *
74477941 GGCCCAAGTTCATGATATATGTG-GCACCT-AAGATCGTTGAGT
1 GGTCCGAGTTCATGATATATGTGAGAACCTGAA-ATCGTTGAGT
74477983 GGTCCGAGTTCAT
1 GGTCCGAGTTCAT
74477996 TATGGATGCG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
41 2 0.04
42 23 0.51
43 20 0.44
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (43 bp):
GGTCCGAGTTCATGATATATGTGAGAACCTGAAATCGTTGAGT
Found at i:74487278 original size:27 final size:27
Alignment explanation
Indices: 74487256--74487728 Score: 223
Period size: 27 Copynumber: 17.5 Consensus size: 27
74487246 TTAGTTTACC
*
74487256 AAATTACCAAAATACCTCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
74487283 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
74487310 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
74487337 AAATTACCAAAATA-CCCTTGATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * **
74487364 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*** * *
74487391 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* * *
74487418 AAATTACCAAAGTA-CCCTCAATTTATA
1 AAATTACCAAAATACCCCT-AGTTTGTA
* * *
74487445 AAATTACCTAAATA-TCCTCGATTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* *
74487472 AAATTATCAAAATA-CCCTCAGTTTGCA
1 AAATTACCAAAATACCCCT-AGTTTGTA
** *
74487499 AAATTACTGAAATA-CCCTTGATTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * **
74487526 AAATTACTGAAATACTCCT-GTAAGATA
1 AAATTACCAAAATACCCCTAGTTTG-TA
* *** * *
74487553 GAATTACCATTTTA-CCCTCGATTTATA
1 AAATTACCAAAATACCCCTAG-TTTGTA
*** * * **
74487580 AAATTACCATTTTA-CCATCGATTTACA
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * * **
74487607 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
* ***
74487634 AAATTACCAAAATA-CCCTCGATCAATA
1 AAATTACCAAAATACCCCTAG-TTTGTA
* *
74487661 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
74487688 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
* *
74487715 GAATTACCGAAATA
1 AAATTACCAAAATA
74487729 TAGGGTAGAA
Statistics
Matches: 355, Mismatches: 78, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
26 16 0.05
27 326 0.92
28 13 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:74487720 original size:54 final size:52
Alignment explanation
Indices: 74487256--74487728 Score: 313
Period size: 54 Copynumber: 8.8 Consensus size: 52
74487246 TTAGTTTACC
*
74487256 AAATTACCAAAATACCTCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACC-CTGA-TTTGTAAAATTACCAAAATA-CCCTGATTTGTA
* *
74487310 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATA-CCCTGA-TTTGTAAAATTACCAAAATACCC-TGATTTGTA
** ** *** *
74487364 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCT-GATTTGTAAAATTACCAAAATACCCT-GATTTGTA
* * * * *
74487418 AAATTACCAAAGTACCCTCAATTTATAAAATTACCTAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCT-GATTTGTAAAATTACCAAAATACCCT-GATTTGTA
* * * **
74487472 AAATTATCAAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTTGATTTGTA
1 AAATTACCAAAATACCCTGA-TTTGTAAAATTACCAAAATACCC-TGATTTGTA
** ** * *** *
74487526 AAATTACTGAAATACTCCTG-TAAGATAGAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATAC-CCTGATTTG-TAAAATTACCAAAATACCCT-GATTTGTA
*** * ** ** * **
74487580 AAATTACCATTTTACCATCGATTTACAAAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCT-GATTTGTAAAATTACCAAAATACCC-TGATTTGTA
*** *
74487634 AAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-GATTTGTAAAATTACCAAAATACC-CTGATTTGTA
** *
74487688 AAATTACCAAAATACCCCTGATTTGTGGAATTACCGAAATA
1 AAATTACCAAAATA-CCCTGATTTGTAAAATTACCAAAATA
74487729 TAGGGTAGAA
Statistics
Matches: 322, Mismatches: 82, Indels: 30
0.74 0.19 0.07
Matches are distributed among these distances:
53 14 0.04
54 294 0.91
55 14 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (52 bp):
AAATTACCAAAATACCCTGATTTGTAAAATTACCAAAATACCCTGATTTGTA
Found at i:74487720 original size:81 final size:80
Alignment explanation
Indices: 74487256--74487728 Score: 355
Period size: 81 Copynumber: 5.8 Consensus size: 80
74487246 TTAGTTTACC
* * *
74487256 AAATTACCAAAATACCTCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAA
1 AAATTACCAAAATACC-CTGA-TTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAA
*
74487320 AATACCC-CTAGTTTGTA
64 AATACCCTCGA-TTTGTA
* * ** ***
74487337 AAATTACCAAAATACCCTTGATTTGTGAAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATACCC-TGATTTGTAAAATTACCGAAATACCCCT-GATTTGTAAAATTACCAA
*
74487401 AATACCCTCGACTTGTA
64 AATACCCTCGATTTGTA
* * * * * *
74487418 AAATTACCAAAGTACCCTCAATTTATAAAATTACCTAAATA-TCCTCGATTTGTAAAATTATCAA
1 AAATTACCAAAATACCCT-GATTTGTAAAATTACCGAAATACCCCT-GATTTGTAAAATTACCAA
*
74487482 AATACCCTC-AGTTTGCA
64 AATACCCTCGA-TTTGTA
** * * ** * *
74487499 AAATTACTGAAATACCCTTGATTTGTAAAATTACTGAAATACTCCTG-TAAGATAGAATTACCAT
1 AAATTACCAAAATACCC-TGATTTGTAAAATTACCGAAATACCCCTGATTTG-TAAAATTACCAA
** *
74487563 TTTACCCTCGATTTATA
64 AATACCCTCGATTTGTA
*** * ** * * * **
74487580 AAATTACCATTTTACCATCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCT-GATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAAA
***
74487645 ATACCCTCGATCAATA
65 ATACCCTCGATTTGTA
* * ** *
74487661 AAATTACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTGGAATTACCGAA
1 AAATTACCAAAATACC-CTGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAAA
74487726 ATA
65 ATA
74487729 TAGGGTAGAA
Statistics
Matches: 304, Mismatches: 75, Indels: 26
0.75 0.19 0.06
Matches are distributed among these distances:
80 10 0.03
81 283 0.93
82 11 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCCTGATTTGTAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAAAA
TACCCTCGATTTGTA
Found at i:74487759 original size:27 final size:27
Alignment explanation
Indices: 74487729--74487913 Score: 271
Period size: 27 Copynumber: 6.9 Consensus size: 27
74487719 TACCGAAATA
74487729 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
74487756 TAGGGTAGAATTATCGCAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
74487783 TAGGGTAGAATTACCGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
74487810 TAGGGTAGAATTACCAAAATACCCTTA
1 TAGGGTAGAATTACCGAAATACCCCTG
*
74487837 TAGGGTAGAATTATCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* *
74487864 TAGGGTAGAATTACCAAAATATCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
74487891 TAGGGTAGAATTACCGAGATACC
1 TAGGGTAGAATTACCGAAATACC
74487914 TTGTGGGGAA
Statistics
Matches: 139, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:74490752 original size:47 final size:47
Alignment explanation
Indices: 74490700--74490913 Score: 329
Period size: 47 Copynumber: 4.6 Consensus size: 47
74490690 GATAATTATG
* *
74490700 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
74490747 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
74490794 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * ** *
74490841 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
74490888 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
74490914 TCCCGAAGGG
Statistics
Matches: 154, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 154 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:74492512 original size:22 final size:22
Alignment explanation
Indices: 74492479--74492543 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
74492469 ATAAAGCCTT
* *
74492479 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
74492501 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGTGCCAAC
*
74492523 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
74492544 ACGTATTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 2 0.05
22 34 0.89
23 2 0.05
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:74492732 original size:27 final size:27
Alignment explanation
Indices: 74492702--74492803 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
74492692 ATTCTGTTAA
* *
74492702 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
74492729 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
74492756 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * **
74492783 GTGACTCTATCACAATATCTG
1 GTGGCTATGCCACAATATCTG
74492804 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:74492797 original size:54 final size:53
Alignment explanation
Indices: 74492702--74492803 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
74492692 ATTCTGTTAA
* * * * *
74492702 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCAC-AATATCTGTTCTG
* *
74492756 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTATCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCACAATATCTG
74492804 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCACAATATCTGTTCTG
Found at i:74492986 original size:31 final size:31
Alignment explanation
Indices: 74492940--74493051 Score: 161
Period size: 31 Copynumber: 3.6 Consensus size: 31
74492930 TTGCATTCAC
*
74492940 ATTCTGATTTTTGATTATGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
74492972 ATTCTAATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
74493003 ATTCTGATATTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
74493034 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
74493052 ATTCTGATTC
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 65 0.92
32 6 0.08
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:74493010 original size:6 final size:6
Alignment explanation
Indices: 74492963--74493071 Score: 75
Period size: 6 Copynumber: 17.8 Consensus size: 6
74492953 ATTATGTTAC
* * *
74492963 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATAT -TGATT CTGATAT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGAT-T CTGATT CTGAT-T
* *
74493013 -TGATT CTG-TT ACCTGATA CTAATT CTGATT CTGATT CTGATT CTGATT
1 CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT CTGATT CTGATT
74493061 CT-AGTT CTGAT
1 CTGA-TT CTGAT
74493072 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
5 7 0.09
6 64 0.78
7 8 0.10
8 2 0.02
9 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:74501297 original size:20 final size:21
Alignment explanation
Indices: 74501272--74501311 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74501262 CACTTGAAAC
74501272 AGGGC-ACACGCCCATGTGGA
1 AGGGCAACACGCCCATGTGGA
*
74501292 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCATGTGG
74501312 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:74502270 original size:48 final size:49
Alignment explanation
Indices: 74502218--74502428 Score: 174
Period size: 48 Copynumber: 4.4 Consensus size: 49
74502208 GTTGATACCG
* *
74502218 TGTCCCGGACAGGTCTTACACTGACTTTTATATATCGAGGT-GATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCA
* * *
74502266 TGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GTCGATGCCA
* * * * * * *
74502315 TGTCCCAGACATGCCTTATACTGAC--ACACA-AT-AAGCT-GATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCA
**
74502359 TGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCCCGA-GTCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAGGT-CGATGCCA
*
74502407 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACAGGTCTTACACT
74502429 AGCTATTGTC
Statistics
Matches: 128, Mismatches: 24, Indels: 22
0.74 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 27 0.21
45 1 0.01
46 5 0.04
47 4 0.03
48 58 0.45
49 32 0.25
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGTCGATGCCA
Found at i:74502429 original size:48 final size:46
Alignment explanation
Indices: 74502350--74502520 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 46
74502340 ACACAATAAG
*
74502350 CTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCCCGAGT
1 CTGATG-CATGTCCCAGACATGTCTTACACTAGCTT-TATAT-CCGAGT
* * * *
74502399 CCGATGCATGTCCCAGACATGTCTTACACTAGCTAT-TGTCTC-AAT
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCTTTATATC-CGAGT
* * * * *
74502444 GCTGATGCATATCCCAGACATGTCTTACACTGGCTCTCATAAT--GTGG
1 -CTGATGCATGTCCCAGACATGTCTTACACTAGCT-TTAT-ATCCGAGT
74502491 CTGATGCATGTCCCAGACATGTCTTACACT
1 CTGATGCATGTCCCAGACATGTCTTACACT
74502521 GGCTCACAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 63 0.62
47 1 0.01
48 28 0.28
49 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CTGATGCATGTCCCAGACATGTCTTACACTAGCTTTATATCCGAGT
Found at i:74502465 original size:46 final size:45
Alignment explanation
Indices: 74502258--74502525 Score: 149
Period size: 46 Copynumber: 5.8 Consensus size: 45
74502248 TATATCGAGG
* * * *
74502258 TGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTA-TCGGTG
1 TGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCAT-AAGT-GG-C
* * * *
74502306 TCGATGCCATGTCCCAGACATGCCTTATACT-GACACACAATAA---GC
1 T-GATG-CATGTCCCAGACATGTCTTACACTAG-CTCTC-ATAAGTGGC
* * * * *
74502351 TGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCCCGAGTC
1 TGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATA---AGTGGC
* *
74502400 CGATGCATGTCCCAGACATGTCTTACACTAGCTATTGTC-TCAA-T-GC
1 TGATGCATGTCCCAGACATGTCTTACACTAGC---TCTCAT-AAGTGGC
* *
74502446 TGATGCATATCCCAGACATGTCTTACACTGGCTCTCATAATGTGGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGC
*
74502492 TGATGCATGTCCCAGACATGTCTTACACTGGCTC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTC
74502526 ACAAACTACC
Statistics
Matches: 174, Mismatches: 26, Indels: 42
0.72 0.11 0.17
Matches are distributed among these distances:
43 8 0.05
44 28 0.16
45 3 0.02
46 66 0.38
48 28 0.16
49 35 0.20
50 3 0.02
51 2 0.01
52 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGC
Found at i:74506582 original size:23 final size:22
Alignment explanation
Indices: 74506542--74506585 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
74506532 CGGTAAAGAG
74506542 TATTTGTTCCTTATAGTCAATT
1 TATTTGTTCCTTATAGTCAATT
* *
74506564 TATTTAGTTGCTTTTAGTCAAT
1 TATTT-GTTCCTTATAGTCAAT
74506586 ACACATTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (22 bp):
TATTTGTTCCTTATAGTCAATT
Found at i:74511391 original size:48 final size:48
Alignment explanation
Indices: 74511293--74511412 Score: 134
Period size: 48 Copynumber: 2.5 Consensus size: 48
74511283 TGTGCCTGTT
* * **
74511293 TAAGATCATGTCTGGGACATGGCATCGACAATGACATGTGTGCTAATA
1 TAAGACCATGTCTGGGACATGGCATCGACAATGACATGAGACCTAATA
* **
74511341 TAAGACCATGTCTGGGACATGGCATC-AGCACTGACATGAGACCTTGTA
1 TAAGACCATGTCTGGGACATGGCATCGA-CAATGACATGAGACCTAATA
* * *
74511389 TAAGACCATATCCGGGATATGGCA
1 TAAGACCATGTCTGGGACATGGCA
74511413 ACGATACGTG
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 1 0.02
48 60 0.98
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGACAATGACATGAGACCTAATA
Found at i:74513255 original size:19 final size:19
Alignment explanation
Indices: 74513230--74513279 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
74513220 TGGTCTAAGG
74513230 ACACGGGCGTGTCCAGGGC
1 ACACGGGCGTGTCCAGGGC
*
74513249 TCACGGGCGTGTCCAGGGC
1 ACACGGGCGTGTCCAGGGC
*
74513268 AAACGGGCGTGT
1 ACACGGGCGTGT
74513280 TCCTGCGCCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.16, C:0.28, G:0.42, T:0.14
Consensus pattern (19 bp):
ACACGGGCGTGTCCAGGGC
Found at i:74514057 original size:22 final size:22
Alignment explanation
Indices: 74514006--74514084 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
74513996 TGTGATGAAC
* * * *
74514006 AGTAAGCTCTATTGAGCTAAAAC
1 AGTAAGCTCTA-CGAGTTAGAAT
74514029 AGTAAGCTCTGACGAGTT-GAAT
1 AGTAAGCTCT-ACGAGTTAGAAT
*
74514051 AGTAAGCTCATATGAGTTGAGAAT
1 AGTAAGCTC-TACGAGTT-AGAAT
74514075 AGTAAGCTCT
1 AGTAAGCTCT
74514085 TAGGAGATGA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
22 17 0.36
23 16 0.34
24 14 0.30
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (22 bp):
AGTAAGCTCTACGAGTTAGAAT
Found at i:74521660 original size:19 final size:19
Alignment explanation
Indices: 74521596--74521670 Score: 57
Period size: 19 Copynumber: 3.9 Consensus size: 19
74521586 TTTTATTTAT
* * *
74521596 TTATTTATTCTTTTTATAT
1 TTATTTATTATTATTATAG
* *
74521615 TTA-TTATTTATTATTCTTG
1 TTATTTA-TTATTATTATAG
74521634 TT-TGTTATTATTATTATAG
1 TTAT-TTATTATTATTATAG
74521653 TTATTTATT-TTAGTTATA
1 TTATTTATTATTA-TTATA
74521671 TGTTTTTGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
18 6 0.14
19 34 0.77
20 4 0.09
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (19 bp):
TTATTTATTATTATTATAG
Found at i:74524383 original size:25 final size:25
Alignment explanation
Indices: 74524355--74524449 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
74524345 CAGGACCATT
*
74524355 TTCACAGCTTGTGTGAGCATTTTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
* *
74524380 TTCACAACTCGTGTGAGCATTCTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
* *
74524405 TTCACAGCTCGCGTGAACATTTTGA
1 TTCACAGCTCGTGTGAGCATTTTGA
* *
74524430 TTCACAGCTCTTATGAGCAT
1 TTCACAGCTCGTGTGAGCAT
74524450 ACATGTATAG
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTTTGA
Found at i:74532939 original size:52 final size:50
Alignment explanation
Indices: 74532855--74532996 Score: 200
Period size: 52 Copynumber: 2.8 Consensus size: 50
74532845 CTTGTAGTCA
* *
74532855 AAGCTA-CCTTCTTCACAAAGTGGCCTTTACATAGTACCACACTTGTGACCC
1 AAGCTATCTTTCTTCAC-AAGTGGCCTTCACATAGTACCACACTTGTGA-CC
74532906 AAGCTATCTTTCTTCACAATGTGGCCTTCACATAGTACCACACTTGTGACC
1 AAGCTATCTTTCTTCACAA-GTGGCCTTCACATAGTACCACACTTGTGACC
*
74532957 AAGCTATCTCTTC-TCA-AAGTGGCCTTCACGTAGTACCACA
1 AAGCTATCT-TTCTTCACAAGTGGCCTTCACATAGTACCACA
74532997 TTTGAGTCAC
Statistics
Matches: 85, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
49 21 0.25
50 2 0.02
51 22 0.26
52 40 0.47
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (50 bp):
AAGCTATCTTTCTTCACAAGTGGCCTTCACATAGTACCACACTTGTGACC
Found at i:74534689 original size:46 final size:46
Alignment explanation
Indices: 74534540--74534712 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
74534530 GGATTATTGT
* * * *
74534540 GAGCTAGTGTAAGACATGTCTGGTATATGCATCAGCCAT--ATTACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGA-GACGA
* *
74534586 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGACGA
* *
74534634 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACG-A
*
74534681 -AGCCAGTGTAAGACATGTCTGGGACATTCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
74534713 GACTACGAGT
Statistics
Matches: 111, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
46 57 0.51
47 28 0.25
48 25 0.23
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGA
Found at i:74536869 original size:27 final size:26
Alignment explanation
Indices: 74536839--74537254 Score: 250
Period size: 27 Copynumber: 15.9 Consensus size: 26
74536829 GAAATTATCA
*
74536839 AAATACCCCTGGTTTGTAAAATTACTG
1 AAATA-CCCTGATTTGTAAAATTACTG
* *
74536866 AAATACCCTCGA-TTGTGAAATTACTA
1 AAATACCCT-GATTTGTAAAATTACTG
* * *
74536892 AAATACCCTTAGTTTATAAAATTACCG
1 AAATACCCTGA-TTTGTAAAATTACTG
**
74536919 AAATA-CC-------TAAAATTACCA
1 AAATACCCTGATTTGTAAAATTACTG
* * * * **
74536937 AAGTACTCTCGGTTTATAAAATTGTTG
1 AAATACCCT-GATTTGTAAAATTACTG
*
74536964 AAATACCCTGATTTGTAAAATTACTA
1 AAATACCCTGATTTGTAAAATTACTG
* *
74536990 AAATACCCCT-AGTTTTTAAAATTATTG
1 AAATA-CCCTGA-TTTGTAAAATTACTG
*
74537017 AAATACCCTCAATTTGTAAAATTA-TCG
1 AAATACCCT-GATTTGTAAAATTACT-G
* * * * *
74537044 ATATGCCCTCAATTTATAAAATTACCG
1 AAATACCCT-GATTTGTAAAATTACTG
*
74537071 AAATACCCTCGA-TTGTGAAATTACTG
1 AAATACCCT-GATTTGTAAAATTACTG
* * * *
74537097 AAATACCCTCAATTTTTGAAATTACCG
1 AAATACCCT-GATTTGTAAAATTACTG
* * *
74537124 AAACACTCTCGATTTGTAAAATTATTG
1 AAATACCCT-GATTTGTAAAATTACTG
*
74537151 AAACACCCTCGATTTGTAAAATTA-TCG
1 AAATACCCT-GATTTGTAAAATTACT-G
*
74537178 AAACACCCTTGATTTGTAAAATTAC-G
1 AAATACCC-TGATTTGTAAAATTACTG
* *
74537204 AAATACCCTTAATCTGTAAAATTA-TCG
1 AAATACCC-TGATTTGTAAAATTACT-G
74537231 AAATACCCTCGATTTGTAAAATTA
1 AAATACCCT-GATTTGTAAAATTA
74537255 ACCAAATACC
Statistics
Matches: 312, Mismatches: 52, Indels: 50
0.75 0.13 0.12
Matches are distributed among these distances:
18 14 0.04
19 1 0.00
25 1 0.00
26 96 0.31
27 198 0.63
28 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (26 bp):
AAATACCCTGATTTGTAAAATTACTG
Found at i:74536912 original size:53 final size:54
Alignment explanation
Indices: 74536830--74537267 Score: 302
Period size: 53 Copynumber: 8.4 Consensus size: 54
74536820 TAATAAAGAG
* * * *
74536830 AAATTA-TCAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACT-AAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
*
74536883 AAATTACTAAAATACCCTTAGTTTATAAAATTACCGAAATA--C-C------TA
1 AAATTACTAAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
* * * ** **
74536928 AAATTACCAAAGTACTCTCGGTTTATAAAATTGTTGAAATACCCT-GATTTGTA
1 AAATTACTAAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
* * * *
74536981 AAATTACTAAAATACCCCTAGTTTTTAAAATTATTGAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
* * * * * * *
74537035 AAATTA-TCGATATGCCCTCAATTTATAAAATTACCGAAATACCCTCGA-TTGTG
1 AAATTACT-AAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
* * * * * * * *
74537088 AAATTACTGAAATACCCTCAATTTTTGAAATTACCGAAACACTCTCGATTTGTA
1 AAATTACTAAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
* * * * * * *
74537142 AAATTATTGAAACACCC-TCGATTTGTAAAATTA-TCGAAACACCCTTGATTTGTA
1 AAATTACTAAAATACCCTTAG-TTTATAAAATTACT-GAAATACCCTCGATTTGTA
* * * *
74537196 AAATTAC-GAAATACCCTTAATCTGTAAAATTA-TCGAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTTAGTTTATAAAATTACT-GAAATACCCTCGATTTGTA
*
74537249 AAATTAAC-CAAATACCCTT
1 AAATT-ACTAAAATACCCTT
74537268 GTAGTGTAAA
Statistics
Matches: 309, Mismatches: 58, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
45 34 0.11
47 1 0.00
50 1 0.00
51 1 0.00
53 162 0.52
54 110 0.36
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (54 bp):
AAATTACTAAAATACCCTTAGTTTATAAAATTACTGAAATACCCTCGATTTGTA
Found at i:74537228 original size:80 final size:81
Alignment explanation
Indices: 74536963--74537266 Score: 312
Period size: 80 Copynumber: 3.8 Consensus size: 81
74536953 TAAAATTGTT
* ** * * *
74536963 GAAATACCCT-GATTTGTAAAATTACTAAAATACCC-CTAGTTTTTAAAATTATTGAAATACCCT
1 GAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCGA-TTTGTAAAATTATCGAAATACCCT
*
74537026 CAATTTGTAAAATTATC
65 CAATTTGTAAAATTACC
* * * *
74537043 GATATGCCCTCAATTTATAAAATTACCGAAATACCCTCGA-TTGTGAAATTA-CTGAAATACCCT
1 GAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCT
* *
74537106 CAATTTTTGAAATTACC
65 CAATTTGTAAAATTACC
* * * ** * * *
74537123 GAAACACTCTCGATTTGTAAAATTATTGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTT
1 GAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTC
*
74537188 GATTTGTAAAATTA-C
66 AATTTGTAAAATTACC
* * * * *
74537203 GAAATACCCTTAATCTGTAAAATTATCGAAATACCCTCGATTTGTAAAATTAACCAAATACCCT
1 GAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCT
74537267 TGTAGTGTAA
Statistics
Matches: 181, Mismatches: 38, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
80 127 0.70
81 51 0.28
82 3 0.02
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (81 bp):
GAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTC
AATTTGTAAAATTACC
Found at i:74537261 original size:27 final size:27
Alignment explanation
Indices: 74536963--74537266 Score: 269
Period size: 27 Copynumber: 11.4 Consensus size: 27
74536953 TAAAATTGTT
74536963 GAAATACCCT-GATTTGTAAAATT-AC
1 GAAATACCCTCGATTTGTAAAATTAAC
* * * **
74536988 TAAAATACCC-CTAGTTTTTAAAATTATT
1 -GAAATACCCTCGA-TTTGTAAAATTAAC
* *
74537016 GAAATACCCTCAATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTAAC
* * * * *
74537043 GATATGCCCTCAATTTATAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTAAC
*
74537070 GAAATACCCTCGA-TTGTGAAATT-AC
1 GAAATACCCTCGATTTGTAAAATTAAC
* * * *
74537095 TGAAATACCCTCAATTTTTGAAATTACC
1 -GAAATACCCTCGATTTGTAAAATTAAC
* * **
74537123 GAAACACTCTCGATTTGTAAAATTATT
1 GAAATACCCTCGATTTGTAAAATTAAC
* *
74537150 GAAACACCCTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTAAC
* *
74537177 GAAACACCCTTGATTTGTAAAATT-AC
1 GAAATACCCTCGATTTGTAAAATTAAC
** * *
74537203 GAAATACCCTTAATCTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTAAC
74537230 GAAATACCCTCGATTTGTAAAATTAAC
1 GAAATACCCTCGATTTGTAAAATTAAC
*
74537257 CAAATACCCT
1 GAAATACCCT
74537267 TGTAGTGTAA
Statistics
Matches: 228, Mismatches: 42, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.00
26 51 0.22
27 173 0.76
28 3 0.01
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTAAC
Found at i:74537266 original size:107 final size:108
Alignment explanation
Indices: 74536926--74537266 Score: 375
Period size: 107 Copynumber: 3.2 Consensus size: 108
74536916 CCGAAATACC
* * * *
74536926 TAAAATT-ACCAAAGTACTCTCGGTTTATAAAATTGTTGAAATACCC-TGATTTGTAAAATTACT
1 TAAAATTAACCAAA-TACCCTCGATTTATAAAATTATCGAAATACCCTTGATTTGTAAAATTACT
* * * * *
74536989 AAAATACCCCTAGTTTTTAAAATTATTGAAATACCCTCAATTTG
65 GAAATACCCTTAATTTTTAAAATTATCGAAATACCCTCGATTTG
* * * * * * * *
74537033 TAAAATTATCGATATGCCCTCAATTTATAAAATTACCGAAATACCCTCGA-TTGTGAAATTACTG
1 TAAAATTAACCAAATACCCTCGATTTATAAAATTATCGAAATACCCTTGATTTGTAAAATTACTG
* * * * *
74537097 AAATACCCTCAATTTTTGAAATTACCGAAACACTCTCGATTTG
66 AAATACCCTTAATTTTTAAAATTATCGAAATACCCTCGATTTG
*** * * *
74537140 TAAAATTATTGAAACACCCTCGATTTGTAAAATTATCGAAACACCCTTGATTTGTAAAATTAC-G
1 TAAAATTAACCAAATACCCTCGATTTATAAAATTATCGAAATACCCTTGATTTGTAAAATTACTG
* *
74537204 AAATACCCTTAATCTGTAAAATTATCGAAATACCCTCGATTTG
66 AAATACCCTTAATTTTTAAAATTATCGAAATACCCTCGATTTG
74537247 TAAAATTAACCAAATACCCT
1 TAAAATTAACCAAATACCCT
74537267 TGTAGTGTAA
Statistics
Matches: 188, Mismatches: 43, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
107 172 0.91
108 16 0.09
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (108 bp):
TAAAATTAACCAAATACCCTCGATTTATAAAATTATCGAAATACCCTTGATTTGTAAAATTACTG
AAATACCCTTAATTTTTAAAATTATCGAAATACCCTCGATTTG
Found at i:74553412 original size:16 final size:16
Alignment explanation
Indices: 74553387--74553417 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74553377 CTAGACCGTA
*
74553387 TGCAATTTTTTTTTTT
1 TGCAAATTTTTTTTTT
74553403 TGCAAATTTTTTTTT
1 TGCAAATTTTTTTTT
74553418 CTTTTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TGCAAATTTTTTTTTT
Found at i:74561428 original size:29 final size:29
Alignment explanation
Indices: 74561376--74561496 Score: 140
Period size: 28 Copynumber: 4.2 Consensus size: 29
74561366 ATCCATACTT
* * *
74561376 ATTCATTTGGCCCCTGTAGG-CCCAATCTC
1 ATTCATATGGCCCAT-TAGGCCCCAATCAC
74561405 ATTCATATGGCCCATTAGGCCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCCAATCAC
* * * *
74561434 TTTCATATGACCTA-TCGGCCCCAATCAC
1 ATTCATATGGCCCATTAGGCCCCAATCAC
*
74561462 ATTCATATGGCCCATT-GGCCCCAATCAT
1 ATTCATATGGCCCATTAGGCCCCAATCAC
74561490 ATTCATA
1 ATTCATA
74561497 GTCACGCAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
28 46 0.58
29 33 0.42
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCCAATCAC
Found at i:74566187 original size:28 final size:28
Alignment explanation
Indices: 74566156--74566224 Score: 129
Period size: 28 Copynumber: 2.5 Consensus size: 28
74566146 ATTATACCCA
*
74566156 AATCACTTTCATATGGCCCATCGGCCCC
1 AATCACATTCATATGGCCCATCGGCCCC
74566184 AATCACATTCATATGGCCCATCGGCCCC
1 AATCACATTCATATGGCCCATCGGCCCC
74566212 AATCACATTCATA
1 AATCACATTCATA
74566225 GTCATGCAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.25
Consensus pattern (28 bp):
AATCACATTCATATGGCCCATCGGCCCC
Found at i:74569634 original size:52 final size:50
Alignment explanation
Indices: 74569526--74569700 Score: 212
Period size: 52 Copynumber: 3.5 Consensus size: 50
74569516 ATACCTAGTG
* * * *
74569526 GCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAAAGT
1 GCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAAGT
*
74569576 GACCTTCACATAGTACCACACTTGTGACCAAACCTATCTTTCTTCACAAAGT
1 G-CCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAAGT
* *
74569628 AGCCTTCACATAGTACCACACTTATGACC-AAGCTATC-TCTTCTCAAAGT
1 -GCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGT
*
74569677 GGCCTTCACATAGTACTACACTTG
1 -GCCTTCACATAGTACCACACTTG
74569701 AGTCACTAGT
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
49 32 0.29
50 1 0.01
51 36 0.33
52 40 0.36
53 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.28
Consensus pattern (50 bp):
GCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAAGT
Found at i:74569720 original size:23 final size:23
Alignment explanation
Indices: 74569694--74569746 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
74569684 ACATAGTACT
74569694 ACACTTGAGTCACTAGTGACATG
1 ACACTTGAGTCACTAGTGACATG
74569717 ACACTTGAGTCACTAGTGACATG
1 ACACTTGAGTCACTAGTGACATG
*
74569740 TCACTTG
1 ACACTTG
74569747 TACCCTATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
ACACTTGAGTCACTAGTGACATG
Found at i:74570806 original size:13 final size:13
Alignment explanation
Indices: 74570774--74570820 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
74570764 CCCAAACGTC
*
74570774 GAAATTTTTGAAT
1 GAAATTTTCGAAT
74570787 G-AATTTTCGAAT
1 GAAATTTTCGAAT
74570799 GAAATTTTCGAAT
1 GAAATTTTCGAAT
74570812 GAAATTTTC
1 GAAATTTTC
74570821 ACAAAACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
12 11 0.34
13 21 0.66
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (13 bp):
GAAATTTTCGAAT
Found at i:74576028 original size:30 final size:29
Alignment explanation
Indices: 74575971--74576028 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
74575961 AGAAAGCTCA
*
74575971 GTTCCAGCTCAACTCCAGCTCATGAGCTT
1 GTTCCAGCTCAACTCCAGCTCACGAGCTT
* *
74576000 GTTCTCAGCTCAACTTCAGCTCCCGAGCT
1 GTTC-CAGCTCAACTCCAGCTCACGAGCT
74576029 CGGACTTAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (29 bp):
GTTCCAGCTCAACTCCAGCTCACGAGCTT
Found at i:74579894 original size:42 final size:40
Alignment explanation
Indices: 74579729--74579893 Score: 136
Period size: 42 Copynumber: 3.9 Consensus size: 40
74579719 AATCATACCA
** *
74579729 ATGCCATATCCCAGACATGGTCTTACGTGGGATCTCATATCG
1 ATGCCATATCCCAGACATGGTCTTAC--ACGAACTCATATCG
* * *
74579771 ATGCCAATAACCCA-ACTATAGTCTTACACGATTCTCATATCG
1 ATGCC-ATATCCCAGAC-ATGGTCTTACACGA-ACTCATATCG
* * *
74579813 ATCCCATGTTCCAGACATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATATCCCAGACATGGTCTTACACG-AA-CTCAT-ATCG
*
74579855 ATGCCATATCCCAGATATGGTCTTACACATGAACTCATA
1 ATGCCATATCCCAGACATGGTCTTACAC--GAACTCATA
74579894 ACCCTAATGT
Statistics
Matches: 100, Mismatches: 14, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
41 20 0.20
42 59 0.59
43 20 0.20
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (40 bp):
ATGCCATATCCCAGACATGGTCTTACACGAACTCATATCG
Found at i:74583408 original size:29 final size:29
Alignment explanation
Indices: 74583360--74583465 Score: 178
Period size: 29 Copynumber: 3.7 Consensus size: 29
74583350 TATTGCCAAC
** *
74583360 TAGGCCC-AATCTTATTCATATGGCCCGT
1 TAGGCCCAAATCACATTCATATGGCCCAT
74583388 TAGGCCCAAATCACATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATGGCCCAT
74583417 TAGGCCCAAATCACATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATATGGCCCAT
74583446 TAGGCCCAAATCACATTCAT
1 TAGGCCCAAATCACATTCAT
74583466 GTTCATGCTT
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
28 7 0.09
29 67 0.91
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.26
Consensus pattern (29 bp):
TAGGCCCAAATCACATTCATATGGCCCAT
Found at i:74583548 original size:17 final size:18
Alignment explanation
Indices: 74583526--74583559 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
74583516 TGCCTATTAT
74583526 GGGCCCA-ATAGCCCATC
1 GGGCCCACATAGCCCATC
74583543 GGGCCCACATAGCCCAT
1 GGGCCCACATAGCCCAT
74583560 TCTGGCCCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.24, C:0.41, G:0.24, T:0.12
Consensus pattern (18 bp):
GGGCCCACATAGCCCATC
Found at i:74589256 original size:17 final size:16
Alignment explanation
Indices: 74589234--74589267 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74589224 GGGGATGGCA
74589234 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
74589251 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
74589267 T
1 T
74589268 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:74599670 original size:46 final size:45
Alignment explanation
Indices: 74599603--74599770 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
74599593 CGCCCCTAAG
*
74599603 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAA
* *
74599649 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTGCATCCATAAA
* * * *
74599696 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAA
74599742 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
74599771 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 55 0.54
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAA
Found at i:74599714 original size:93 final size:93
Alignment explanation
Indices: 74599604--74599774 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
74599594 GCCCCTAAGT
* *
74599604 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
74599669 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
74599697 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
74599762 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74599775 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74610999 original size:6 final size:6
Alignment explanation
Indices: 74610981--74611074 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
74610971 AAGAAACATT
* *
74610981 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGT ATCAAGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA
* * *
74611030 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
74611075 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 7 0.10
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:74611033 original size:31 final size:31
Alignment explanation
Indices: 74610995--74611074 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
74610985 GAACTAGAAT
* *
74610995 CAGAATCAGAATCAGAATTAGTATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
*
74611026 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAAGTAA
74611057 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
74611075 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAAGTAA
Found at i:74611248 original size:27 final size:26
Alignment explanation
Indices: 74611206--74611307 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
74611196 AATCAGTTAT
* *
74611206 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
74611233 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
74611259 CAGATATTTGTGGCATAGCCACCAAAAA
1 CAGATA-TTGTGGCAGAGCCACC-AGAA
* * *
74611287 CAGATACTGTGGGAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
74611308 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.76
28 9 0.14
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:74611493 original size:22 final size:22
Alignment explanation
Indices: 74611465--74611529 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74611455 GCAAATACGT
*
74611465 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
74611487 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
74611509 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
74611530 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:74612012 original size:27 final size:27
Alignment explanation
Indices: 74611956--74612229 Score: 378
Period size: 27 Copynumber: 10.3 Consensus size: 27
74611946 GGGGTAAAAT
* * * *
74611956 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74611982 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74612009 GGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74612036 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74612063 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
74612090 GG-AATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74612116 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74612142 TGGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
74612170 GGTAATTCTACCC-ACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
74612196 GGTAATTTTA-CAAATTAGGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGGTATTTC
74612223 GGTAATT
1 GGTAATT
74612230 TTATAAACTA
Statistics
Matches: 225, Mismatches: 17, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
25 1 0.00
26 65 0.29
27 156 0.69
28 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:74612120 original size:107 final size:107
Alignment explanation
Indices: 74611957--74612229 Score: 374
Period size: 107 Copynumber: 2.6 Consensus size: 107
74611947 GGGTAAAATG
* * * * *
74611957 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGGTAATTCTACC
1 GTAATTCTA-CCCACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
74612021 CTACAGAGGTATT-TCGGTAATTCTACCCTACAGGGGTATTTCA
65 CTACAGAGGTATTCT-GGTAATTCTACCCTACAGGGGTATTTCA
*
74612064 GTAATTCTACCCTACAGGGGTATTTTGG-AATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCC-ACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
* *
74612128 CTACAGGGGTATTCTGGTAATTCTACCCTACAGGGGTATTTCG
65 CTACAGAGGTATTCTGGTAATTCTACCCTACAGGGGTATTTCA
* ** *
74612171 GTAATTCTACCCACAGGGGTATTTCGGTAATTTTA-CAAATTAGGGGTATTTCGGTAATT
1 GTAATTCTACCCACAGGGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTCGGTAATT
74612230 TTATAAACTA
Statistics
Matches: 148, Mismatches: 13, Indels: 10
0.87 0.08 0.06
Matches are distributed among these distances:
106 19 0.13
107 120 0.81
108 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (107 bp):
GTAATTCTACCCACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
TACAGAGGTATTCTGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:74612230 original size:27 final size:26
Alignment explanation
Indices: 74612105--74612247 Score: 117
Period size: 27 Copynumber: 5.3 Consensus size: 26
74612095 TCTACCCTAC
* ** *
74612105 AGGGGTATTTCGGTAATTCTACCCTAC
1 AGGGGTATTTCGGTAATTTTA-CAAAT
* ** *
74612132 AGGGGTA-TTCTGGTAATTCTACCCTAC
1 AGGGGTATTTC-GGTAATTTTA-CAAAT
* ** *
74612159 AGGGGTATTTCGGTAATTCTACCCAC
1 AGGGGTATTTCGGTAATTTTACAAAT
74612185 AGGGGTATTTCGGTAATTTTACAAATT
1 AGGGGTATTTCGGTAATTTTACAAA-T
*
74612212 AGGGGTATTTCGGTAATTTTATAAACT
1 AGGGGTATTTCGGTAATTTTACAAA-T
74612239 AGGGGTATT
1 AGGGGTATT
74612248 CTGGAAATTT
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
26 29 0.27
27 74 0.70
28 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (26 bp):
AGGGGTATTTCGGTAATTTTACAAAT
Found at i:74612247 original size:80 final size:81
Alignment explanation
Indices: 74611956--74612229 Score: 387
Period size: 80 Copynumber: 3.4 Consensus size: 81
74611946 GGGGTAAAAT
* * * * *
74611956 GGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
*
74612020 CCTACAGAGGTATTTC
66 CCTACAGGGGTATTTC
*
74612036 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGG-AATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
74612100 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
*
74612116 GGTAATTCTACCCTACAGGGGTA-TTCTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
1 GGTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTA
74612180 CCC-ACAGGGGTATTTC
65 CCCTACAGGGGTATTTC
* ** *
74612196 GGTAATTTTA-CAAATTAGGGGTATTTCGGTAATT
1 GGTAATTCTACCCTA-CAGGGGTATTTCGGTAATT
74612230 TTATAAACTA
Statistics
Matches: 176, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
79 5 0.03
80 124 0.70
81 47 0.27
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:74612256 original size:27 final size:27
Alignment explanation
Indices: 74612159--74612260 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
74612149 TCTACCCTAC
* ***
74612159 AGGGGTATTTCGGTAATTCTACCCAC-
1 AGGGGTATTTCGGTAATTTTATAAACT
* *
74612185 AGGGGTATTTCGGTAATTTTACAAATT
1 AGGGGTATTTCGGTAATTTTATAAACT
74612212 AGGGGTATTTCGGTAATTTTATAAACT
1 AGGGGTATTTCGGTAATTTTATAAACT
*
74612239 AGGGGTA-TTCTGGAAATTTTAT
1 AGGGGTATTTC-GGTAATTTTAT
74612261 TGGTTGAGGG
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 25 0.37
27 42 0.63
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTATAAACT
Found at i:74612336 original size:27 final size:27
Alignment explanation
Indices: 74612314--74612475 Score: 245
Period size: 27 Copynumber: 6.0 Consensus size: 27
74612304 ACTAATTTTG
* *
74612314 TAAATCGATGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
74612341 TAAATTG-GGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
74612367 TAAATCGAGGGTAAGACGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
74612394 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
74612421 TAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
74612448 TAAATCAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
74612475 T
1 T
74612476 CTTACAAGAG
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
26 24 0.20
27 99 0.80
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:74612369 original size:80 final size:81
Alignment explanation
Indices: 74612276--74612461 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 81
74612266 GAGGGTATTT
* *** * * *
74612276 TGGTAACTT-TGTAAATCAAAGGTATTTCACTAATTTTGTAAATCGATGGTAAAATGGTAATTCT
1 TGGTAA-TTCTGTAAATCAAGGGTAAGACACTAATTCTATAAATCGAGGGTAAAATGGTAATTCT
* *
74612340 GTAAATTG-GGGTAAAA
65 ATAAATCGAGGGTAAAA
* **
74612356 TGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
1 TGGTAATTCTGTAAATCAAGGGTAAGACACTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
74612421 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* *
74612437 TGATAATTCTATAAATCAAGGGTAA
1 TGGTAATTCTGTAAATCAAGGGTAA
74612462 AATGGTAATT
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 57 0.64
81 30 0.34
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCAAGGGTAAGACACTAATTCTATAAATCGAGGGTAAAATGGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:74612515 original size:27 final size:27
Alignment explanation
Indices: 74612485--74612632 Score: 151
Period size: 27 Copynumber: 5.6 Consensus size: 27
74612475 TCTTACAAGA
*
74612485 GTATTTCGGTAATTTTGCAAACTGAGG
1 GTATTTCGGTAATTTTACAAACTGAGG
*
74612512 GTATTTCGATAATTTTACAAA-TCGAGG
1 GTATTTCGGTAATTTTACAAACT-GAGG
* * *
74612539 GTATTTCAGTAATTTTACAATC-GACG
1 GTATTTCGGTAATTTTACAAACTGAGG
* * * *
74612565 GTTTTTCGGTAATTTTATAAACCGGGG
1 GTATTTCGGTAATTTTACAAACTGAGG
*
74612592 GTACTTT-GGTAATTTTAC-AACTGGGG
1 GTA-TTTCGGTAATTTTACAAACTGAGG
*
74612618 GTATTTCAGTAATTT
1 GTATTTCGGTAATTT
74612633 GGTAAACTAA
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
25 3 0.03
26 39 0.39
27 55 0.55
28 3 0.03
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAACTGAGG
Found at i:74612594 original size:53 final size:54
Alignment explanation
Indices: 74612485--74612632 Score: 151
Period size: 53 Copynumber: 2.8 Consensus size: 54
74612475 TCTTACAAGA
* * *
74612485 GTATTTCGGTAATTTTGCAAACTGAGGGTATTTCGATAATTTTACAAATCGAGG
1 GTATTTCGGTAATTTTACAAACTGACGGTATTTCGATAATTTTACAAACCGAGG
* * * * * *
74612539 GTATTTCAGTAATTTTACAATC-GACGGTTTTTCGGTAATTTTATAAACCGGGG
1 GTATTTCGGTAATTTTACAAACTGACGGTATTTCGATAATTTTACAAACCGAGG
**
74612592 GTACTTT-GGTAATTTTAC-AACTGGGGGTATTTC-AGTAATTT
1 GTA-TTTCGGTAATTTTACAAACTGACGGTATTTCGA-TAATTT
74612633 GGTAAACTAA
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
52 2 0.03
53 52 0.68
54 22 0.29
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (54 bp):
GTATTTCGGTAATTTTACAAACTGACGGTATTTCGATAATTTTACAAACCGAGG
Found at i:74614603 original size:6 final size:6
Alignment explanation
Indices: 74614585--74614678 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
74614575 AAGAAACATT
* *
74614585 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
74614634 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAAA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
74614679 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 7 0.10
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:74614637 original size:31 final size:31
Alignment explanation
Indices: 74614599--74614678 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
74614589 GAACTAGAAT
* *
74614599 CAGAATCAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
74614630 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
74614661 CAAAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
74614679 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:74614649 original size:25 final size:25
Alignment explanation
Indices: 74614605--74614675 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
74614595 GAATCAGAAT
* * *
74614605 CAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGGTAA
*
74614630 CAGAATCAAAATCAGAATCA-GTAT
1 CAGAATCAAAATCAGAATCAGGTAA
*
74614654 CAGGTAA-CAAAATCAAAATCAG
1 CA-G-AATCAAAATCAGAATCAG
74614676 AATGTGAATG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
24 5 0.13
25 31 0.82
26 2 0.05
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.20
Consensus pattern (25 bp):
CAGAATCAAAATCAGAATCAGGTAA
Found at i:74614852 original size:27 final size:27
Alignment explanation
Indices: 74614810--74614911 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
74614800 GCTCAGTTAT
* * *
74614810 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
74614837 CAGATATTGTGGCAGAGCCACCAG-GA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
74614863 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
* *
74614891 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
74614912 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.79
28 7 0.11
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:74614894 original size:54 final size:53
Alignment explanation
Indices: 74614810--74614911 Score: 141
Period size: 54 Copynumber: 1.9 Consensus size: 53
74614800 GCTCAGTTAT
* * * *
74614810 CAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCACCAGGA
1 CAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGGA
* *
74614863 CAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCCAC
1 CAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCAC
74614912 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 6 0.14
54 36 0.86
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCACCAGGA
Found at i:74615097 original size:22 final size:22
Alignment explanation
Indices: 74615069--74615133 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74615059 GCAAATACGT
*
74615069 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
74615091 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
74615113 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
74615134 AAGACTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:74615617 original size:27 final size:27
Alignment explanation
Indices: 74615579--74615970 Score: 450
Period size: 27 Copynumber: 14.5 Consensus size: 27
74615569 ACCCCACAAT
* *
74615579 GTATCTCGGTAATTCCACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
74615606 GTATTTTGGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
74615633 GTATTTCGGTAATTCTACCCTATAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
74615660 GTATTTCAGTAATTCTACCCTACAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
74615687 GTATTTTGGTAATTCTACCCTAGAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * *
74615714 GTATTTCGATAAATCTACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTACAGGG
*
74615741 GTATTTCGGTAATTCTACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
74615768 GTATTTCGGTAATTCCACCCTACAAGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
74615795 GTA-TTCTGGTAATTCCACCCTACAAGG
1 GTATTTC-GGTAATTCTACCCTACAGGG
* *
74615822 GTATTCCGGTAATTCTACCCTACAGAG
1 GTATTTCGGTAATTCTACCCTACAGGG
* *
74615849 GTA-TTCTGATAATTCTACCCTACAAGG
1 GTATTTC-GGTAATTCTACCCTACAGGG
* *
74615876 GTATTTCGGTAATTCTAACCTATAGGG
1 GTATTTCGGTAATTCTACCCTACAGGG
* * * **
74615903 ATATTTCGATAATTTTA-CAAATCAGGG
1 GTATTTCGGTAATTCTACCCTA-CAGGG
* **
74615930 GTATTTCGGTAATTTTA-CAAACCAGGG
1 GTATTTCGGTAATTCTACCCTA-CAGGG
*
74615957 GTATTTTGGTAATT
1 GTATTTCGGTAATT
74615971 TTATTGATCG
Statistics
Matches: 320, Mismatches: 40, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
26 7 0.02
27 308 0.96
28 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GTATTTCGGTAATTCTACCCTACAGGG
Found at i:74616040 original size:27 final size:27
Alignment explanation
Indices: 74615873--74616374 Score: 183
Period size: 27 Copynumber: 18.7 Consensus size: 27
74615863 CTACCCTACA
* ** **
74615873 AGGGTATTTCGGTAATTCTA-ACCTAT
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
74615899 AGGGATATTTCGATAATTTTACAAATC-
1 AGGG-TATTTCGGTAATTTTATAAATCG
* *
74615926 AGGGGTATTTCGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTATAAATCG
* **
74615953 AGGGGTATTTTGGTAATTTTATTGATCG
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * *
74615981 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
74616008 AAGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** *
74616035 AGGGTAAAAT-GGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** *
74616062 AGGGTAAAAT-GGTAATTCTGA-AAATCG
1 AGGGT-ATTTCGGTAATT-TTATAAATCG
** * *
74616089 AGGGTAAGAT-GGTAATTCTGTAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** *
74616116 AGGGTAAAAT-GGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** ** * * *
74616143 AGGGTAAAAT-AATAATTCTGTAAATTG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
** * **
74616170 AGGGTAAAAT-GGTAATTCTAT-CTTAC-
1 AGGGT-ATTTCGGTAATTTTATAAAT-CG
** *
74616196 AGGAGTATTTTAGTAATTTTACAAATC-
1 AGG-GTATTTCGGTAATTTTATAAATCG
* *
74616223 ATGGGTATTTCAGTAATTTTACAAA-CTG
1 A-GGGTATTTCGGTAATTTTATAAATC-G
* *
74616251 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
74616278 AGGGTATTTTAGTAATTTTA-CAATCA
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
74616304 ATGGTATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
74616331 GGGGTACTTT-GTTAATTTTACAACT-G
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* *
74616357 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
74616375 GGTAAACTAA
Statistics
Matches: 383, Mismatches: 74, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.01
26 46 0.12
27 316 0.83
28 18 0.05
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:74616075 original size:81 final size:81
Alignment explanation
Indices: 74615963--74616166 Score: 239
Period size: 81 Copynumber: 2.5 Consensus size: 81
74615953 AGGGGTATTT
* ** *** * ** *
74615963 TGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAAGGT-ATTTCAGTAATTTT
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAAGGTAAGAT-AGTAATTCT
74616027 GTAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* * * * *
74616044 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGAAAATCGAGGGTAAGATGGTAATTCTG
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAAGGTAAGATAGTAATTCTG
74616109 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
**
74616125 TGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGTAAA
1 TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAA
74616167 TTGAGGGTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
81 102 0.98
82 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.34
Consensus pattern (81 bp):
TGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAACCAAAGGTAAGATAGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:74616077 original size:54 final size:54
Alignment explanation
Indices: 74616019--74616188 Score: 268
Period size: 54 Copynumber: 3.1 Consensus size: 54
74616009 AGGTATTTCA
* *
74616019 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
* *
74616073 GTAATTCTGAAAATCGAGGGTAAGATGGTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
* ** *
74616127 GTAATTCTATAAATCGAGGGTAAAATAATAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
74616181 GTAATTCT
1 GTAATTCT
74616189 ATCTTACAGG
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
Found at i:74616173 original size:81 final size:81
Alignment explanation
Indices: 74616019--74616188 Score: 286
Period size: 81 Copynumber: 2.1 Consensus size: 81
74616009 AGGTATTTCA
* **
74616019 GTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGAA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGAA
*
74616084 AATCGAGGGTAAGATG
66 AATCGAGGGTAAAATG
*
74616100 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGAA
*
74616165 AATTGAGGGTAAAATG
66 AATCGAGGGTAAAATG
74616181 GTAATTCT
1 GTAATTCT
74616189 ATCTTACAGG
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAATAATTCTGAA
AATCGAGGGTAAAATG
Found at i:74616258 original size:54 final size:52
Alignment explanation
Indices: 74616200--74616374 Score: 169
Period size: 53 Copynumber: 3.3 Consensus size: 52
74616190 TCTTACAGGA
*
74616200 GTATTTTAGTAATTTTACAAATCATGGGTATTTCAGTAATTTTACAAACTGAGG
1 GTATTTCAGTAATTTTACAAATCA-GGGTATTT-AGTAATTTTACAAACTGAGG
* * *
74616254 GTATTTC-GATAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATC-AATG
1 GTATTTCAG-TAATTTTACAAATC-AGGGTA-TTTAGTAATTTTACAAACTGAGG
* * * * *
74616307 GTATTTCGGTAATTTTATAAACCGGGGGTACTTT-GTTAATTTTAC-AACTGGGG
1 GTATTTCAGTAATTTTACAAATC-AGGGTA-TTTAG-TAATTTTACAAACTGAGG
74616360 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
74616375 GGTAAACTAA
Statistics
Matches: 102, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 3 0.03
53 55 0.54
54 40 0.39
55 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (52 bp):
GTATTTCAGTAATTTTACAAATCAGGGTATTTAGTAATTTTACAAACTGAGG
Found at i:74618915 original size:15 final size:15
Alignment explanation
Indices: 74618897--74618931 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
74618887 AAGGCCGAGG
74618897 AAGAAAATATTGAGA
1 AAGAAAATATTGAGA
74618912 AAGAAAATATTGAGA
1 AAGAAAATATTGAGA
74618927 AAGAA
1 AAGAA
74618932 TCCACTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (15 bp):
AAGAAAATATTGAGA
Found at i:74618940 original size:15 final size:15
Alignment explanation
Indices: 74618922--74618957 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
74618912 AAGAAAATAT
74618922 TGAGAAAGAATCCAC
1 TGAGAAAGAATCCAC
*
74618937 TGAGAAAGAATCTAC
1 TGAGAAAGAATCCAC
74618952 TGAGAA
1 TGAGAA
74618958 CATTGTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.47, C:0.14, G:0.22, T:0.17
Consensus pattern (15 bp):
TGAGAAAGAATCCAC
Found at i:74619387 original size:17 final size:17
Alignment explanation
Indices: 74619365--74619397 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74619355 GTTAGTGCAC
*
74619365 ATTGTCATTTCATTTTT
1 ATTGTCATTACATTTTT
74619382 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
74619398 AATGTTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.61
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:74620936 original size:40 final size:40
Alignment explanation
Indices: 74620853--74620998 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
74620843 TTGAATGATG
* * *
74620853 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
*
74620893 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
74620933 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
*
74620974 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74620999 AACGAGTTGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:74621005 original size:40 final size:40
Alignment explanation
Indices: 74620854--74621017 Score: 163
Period size: 40 Copynumber: 4.1 Consensus size: 40
74620844 TGAATGATGT
* * * *
74620854 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
74620894 CCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
74620933 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* ** * *
74620974 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
74621014 CCGG
1 CCGG
74621018 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 92 0.88
41 10 0.10
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Done.